2021-07-10T03:45:46,228 Created temporary directory: /tmp/pip-ephem-wheel-cache-1wks6_tu 2021-07-10T03:45:46,231 Created temporary directory: /tmp/pip-req-tracker-9m_dc07k 2021-07-10T03:45:46,231 Initialized build tracking at /tmp/pip-req-tracker-9m_dc07k 2021-07-10T03:45:46,232 Created build tracker: /tmp/pip-req-tracker-9m_dc07k 2021-07-10T03:45:46,232 Entered build tracker: /tmp/pip-req-tracker-9m_dc07k 2021-07-10T03:45:46,232 Created temporary directory: /tmp/pip-wheel-13kjidle 2021-07-10T03:45:46,264 1 location(s) to search for versions of gat: 2021-07-10T03:45:46,264 * https://pypi.org/simple/gat/ 2021-07-10T03:45:46,265 Fetching project page and analyzing links: https://pypi.org/simple/gat/ 2021-07-10T03:45:46,265 Getting page https://pypi.org/simple/gat/ 2021-07-10T03:45:46,267 Found index url https://pypi.org/simple 2021-07-10T03:45:46,357 Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1 2021-07-10T03:45:46,358 Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2 2021-07-10T03:45:46,358 Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1 2021-07-10T03:45:46,359 Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2 2021-07-10T03:45:46,359 Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1 2021-07-10T03:45:46,359 Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2 2021-07-10T03:45:46,360 Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0 2021-07-10T03:45:46,360 Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1 2021-07-10T03:45:46,360 Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2 2021-07-10T03:45:46,360 Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3 2021-07-10T03:45:46,361 Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4 2021-07-10T03:45:46,361 Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5 2021-07-10T03:45:46,361 Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6 2021-07-10T03:45:46,361 Skipping link: not a file: https://pypi.org/simple/gat/ 2021-07-10T03:45:46,380 Given no hashes to check 1 links for project 'gat': discarding no candidates 2021-07-10T03:45:46,399 Collecting gat==1.2.2 2021-07-10T03:45:46,401 Created temporary directory: /tmp/pip-unpack-w85whnys 2021-07-10T03:45:46,660 Downloading gat-1.2.2.tar.gz (448 kB) 2021-07-10T03:45:47,191 Added gat==1.2.2 from https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 to build tracker '/tmp/pip-req-tracker-9m_dc07k' 2021-07-10T03:45:47,192 Running setup.py (path:/tmp/pip-wheel-13kjidle/gat_1b1e15373fca416d9fc07ffe179badfb/setup.py) egg_info for package gat 2021-07-10T03:45:47,193 Created temporary directory: /tmp/pip-pip-egg-info-haz2cprt 2021-07-10T03:45:47,193 Running command python setup.py egg_info 2021-07-10T03:45:48,246 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-10T03:45:48,247 warnings.warn( 2021-07-10T03:45:48,378 running egg_info 2021-07-10T03:45:48,380 creating /tmp/pip-pip-egg-info-haz2cprt/gat.egg-info 2021-07-10T03:45:48,381 writing /tmp/pip-pip-egg-info-haz2cprt/gat.egg-info/PKG-INFO 2021-07-10T03:45:48,383 writing dependency_links to /tmp/pip-pip-egg-info-haz2cprt/gat.egg-info/dependency_links.txt 2021-07-10T03:45:48,385 writing requirements to /tmp/pip-pip-egg-info-haz2cprt/gat.egg-info/requires.txt 2021-07-10T03:45:48,386 writing top-level names to /tmp/pip-pip-egg-info-haz2cprt/gat.egg-info/top_level.txt 2021-07-10T03:45:48,388 writing manifest file '/tmp/pip-pip-egg-info-haz2cprt/gat.egg-info/SOURCES.txt' 2021-07-10T03:45:48,530 reading manifest file '/tmp/pip-pip-egg-info-haz2cprt/gat.egg-info/SOURCES.txt' 2021-07-10T03:45:48,531 reading manifest template 'MANIFEST.in' 2021-07-10T03:45:48,532 warning: no files found matching 'COPYING' 2021-07-10T03:45:48,532 warning: no files found matching 'INSTALL' 2021-07-10T03:45:48,533 warning: no files found matching 'KNOWN_BUGS' 2021-07-10T03:45:48,533 warning: no files found matching 'THANKS' 2021-07-10T03:45:48,539 writing manifest file '/tmp/pip-pip-egg-info-haz2cprt/gat.egg-info/SOURCES.txt' 2021-07-10T03:45:48,632 Source in /tmp/pip-wheel-13kjidle/gat_1b1e15373fca416d9fc07ffe179badfb has version 1.2.2, which satisfies requirement gat==1.2.2 from https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 2021-07-10T03:45:48,633 Removed gat==1.2.2 from https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 from build tracker '/tmp/pip-req-tracker-9m_dc07k' 2021-07-10T03:45:48,638 Created temporary directory: /tmp/pip-unpack-x4_6plbo 2021-07-10T03:45:48,638 Building wheels for collected packages: gat 2021-07-10T03:45:48,643 Created temporary directory: /tmp/pip-wheel-7v67lr5u 2021-07-10T03:45:48,644 Building wheel for gat (setup.py): started 2021-07-10T03:45:48,644 Destination directory: /tmp/pip-wheel-7v67lr5u 2021-07-10T03:45:48,644 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-13kjidle/gat_1b1e15373fca416d9fc07ffe179badfb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-13kjidle/gat_1b1e15373fca416d9fc07ffe179badfb/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-7v67lr5u 2021-07-10T03:45:49,657 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-10T03:45:49,658 warnings.warn( 2021-07-10T03:45:49,797 running bdist_wheel 2021-07-10T03:45:49,802 running build 2021-07-10T03:45:49,802 running build_py 2021-07-10T03:45:49,934 creating build 2021-07-10T03:45:49,935 creating build/lib.linux-armv7l-3.9 2021-07-10T03:45:49,935 creating build/lib.linux-armv7l-3.9/gat 2021-07-10T03:45:49,936 copying gat/__init__.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:45:49,939 copying gat/Stats.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:45:49,942 copying gat/IO.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:45:49,944 copying gat/Experiment.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:45:49,947 copying gat/IOTools.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:45:49,949 copying gat/Bed.py -> build/lib.linux-armv7l-3.9/gat 2021-07-10T03:45:49,952 running build_ext 2021-07-10T03:45:50,013 skipping 'GatSegmentList/GatSegmentList.c' Cython extension (up-to-date) 2021-07-10T03:45:50,014 skipping 'GatEngine/GatEngine.c' Cython extension (up-to-date) 2021-07-10T03:45:50,014 building 'GatSegmentList' extension 2021-07-10T03:45:50,014 creating build/temp.linux-armv7l-3.9 2021-07-10T03:45:50,015 creating build/temp.linux-armv7l-3.9/GatSegmentList 2021-07-10T03:45:50,016 creating build/temp.linux-armv7l-3.9/utils 2021-07-10T03:45:50,016 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c GatSegmentList/GatSegmentList.c -o build/temp.linux-armv7l-3.9/GatSegmentList/GatSegmentList.o 2021-07-10T03:45:50,437 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T03:45:50,437 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T03:45:50,437 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T03:45:50,438 from GatSegmentList/GatSegmentList.c:324: 2021-07-10T03:45:50,438 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T03:45:50,438 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T03:45:50,438 | ^~~~~~~ 2021-07-10T03:45:50,518 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList___init__’: 2021-07-10T03:45:50,519 GatSegmentList/GatSegmentList.c:2952:20: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration] 2021-07-10T03:45:50,519 2952 | __pyx_t_14 = PyString_AsString(__pyx_t_5); if (unlikely(__pyx_t_14 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:45:50,519 | ^~~~~~~~~~~~~~~~~ 2021-07-10T03:45:50,520 GatSegmentList/GatSegmentList.c:2952:18: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T03:45:50,521 2952 | __pyx_t_14 = PyString_AsString(__pyx_t_5); if (unlikely(__pyx_t_14 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 222; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:45:50,521 | ^ 2021-07-10T03:45:50,538 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_2__reduce__’: 2021-07-10T03:45:50,540 GatSegmentList/GatSegmentList.c:3412:17: warning: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2021-07-10T03:45:50,540 3412 | __pyx_t_7 = PyString_FromStringAndSize(((char *)__pyx_v_self->segments), ((__pyx_v_self->nsegments * (sizeof(__pyx_t_14GatSegmentList_Position))) * 2)); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 268; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:45:50,540 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:50,540 | PyBytes_FromStringAndSize 2021-07-10T03:45:50,542 GatSegmentList/GatSegmentList.c:3412:15: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T03:45:50,542 3412 | __pyx_t_7 = PyString_FromStringAndSize(((char *)__pyx_v_self->segments), ((__pyx_v_self->nsegments * (sizeof(__pyx_t_14GatSegmentList_Position))) * 2)); if (unlikely(!__pyx_t_7)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 268; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:45:50,542 | ^ 2021-07-10T03:45:50,572 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_trim_ends’: 2021-07-10T03:45:50,575 GatSegmentList/GatSegmentList.c:5420:124: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-10T03:45:50,575 5420 | if (unlikely(!((((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-10T03:45:50,575 | ^ 2021-07-10T03:45:50,575 GatSegmentList/GatSegmentList.c:476:45: note: in definition of macro ‘unlikely’ 2021-07-10T03:45:50,575 476 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-10T03:45:50,575 | ^ 2021-07-10T03:45:50,578 GatSegmentList/GatSegmentList.c:5469:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,579 5469 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,579 | ^~ 2021-07-10T03:45:50,582 GatSegmentList/GatSegmentList.c:5600:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,583 5600 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,583 | ^~ 2021-07-10T03:45:50,589 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList__resize’: 2021-07-10T03:45:50,591 GatSegmentList/GatSegmentList.c:5882:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,592 5882 | if (unlikely(!((__pyx_v_nsegments >= __pyx_v_self->nsegments) != 0))) { 2021-07-10T03:45:50,592 | ^~ 2021-07-10T03:45:50,592 GatSegmentList/GatSegmentList.c:476:45: note: in definition of macro ‘unlikely’ 2021-07-10T03:45:50,592 476 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-10T03:45:50,592 | ^ 2021-07-10T03:45:50,594 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_insert’: 2021-07-10T03:45:50,598 GatSegmentList/GatSegmentList.c:6061:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T03:45:50,598 6061 | if (((__pyx_t_4 > __pyx_t_5) != 0)) { 2021-07-10T03:45:50,598 | ^ 2021-07-10T03:45:50,601 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_trim’: 2021-07-10T03:45:50,604 GatSegmentList/GatSegmentList.c:6248:124: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-10T03:45:50,604 6248 | if (unlikely(!((((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-10T03:45:50,604 | ^ 2021-07-10T03:45:50,604 GatSegmentList/GatSegmentList.c:476:45: note: in definition of macro ‘unlikely’ 2021-07-10T03:45:50,605 476 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-10T03:45:50,605 | ^ 2021-07-10T03:45:50,608 GatSegmentList/GatSegmentList.c:6315:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,609 6315 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,609 | ^~ 2021-07-10T03:45:50,613 GatSegmentList/GatSegmentList.c:6386:31: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,613 6386 | __pyx_t_5 = ((__pyx_v_p == (__pyx_v_self->segments[__pyx_v_idx]).start) != 0); 2021-07-10T03:45:50,613 | ^~ 2021-07-10T03:45:50,616 GatSegmentList/GatSegmentList.c:6482:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,616 6482 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,617 | ^~ 2021-07-10T03:45:50,623 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_normalize’: 2021-07-10T03:45:50,626 GatSegmentList/GatSegmentList.c:6725:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,627 6725 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,627 | ^ 2021-07-10T03:45:50,631 GatSegmentList/GatSegmentList.c:6751:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,631 6751 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,631 | ^~ 2021-07-10T03:45:50,634 GatSegmentList/GatSegmentList.c:6814:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,634 6814 | __pyx_t_5 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,635 | ^ 2021-07-10T03:45:50,639 GatSegmentList/GatSegmentList.c:6884:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,639 6884 | if (unlikely(!((__pyx_v_insertion_idx < __pyx_v_self->nsegments) != 0))) { 2021-07-10T03:45:50,639 | ^ 2021-07-10T03:45:50,639 GatSegmentList/GatSegmentList.c:476:45: note: in definition of macro ‘unlikely’ 2021-07-10T03:45:50,640 476 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-10T03:45:50,640 | ^ 2021-07-10T03:45:50,644 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_merge’: 2021-07-10T03:45:50,648 GatSegmentList/GatSegmentList.c:7169:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,648 7169 | __pyx_t_4 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,648 | ^ 2021-07-10T03:45:50,652 GatSegmentList/GatSegmentList.c:7195:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,653 7195 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,653 | ^~ 2021-07-10T03:45:50,656 GatSegmentList/GatSegmentList.c:7258:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,656 7258 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,656 | ^ 2021-07-10T03:45:50,664 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_check’: 2021-07-10T03:45:50,667 GatSegmentList/GatSegmentList.c:7622:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,667 7622 | for (__pyx_v_idx = 1; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-10T03:45:50,668 | ^ 2021-07-10T03:45:50,672 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList__getInsertionPoint’: 2021-07-10T03:45:50,675 GatSegmentList/GatSegmentList.c:7949:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,676 7949 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,676 | ^~ 2021-07-10T03:45:50,688 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_overlap’: 2021-07-10T03:45:50,692 GatSegmentList/GatSegmentList.c:8547:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,693 8547 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,693 | ^~ 2021-07-10T03:45:50,697 GatSegmentList/GatSegmentList.c:8584:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,697 8584 | __pyx_t_1 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,697 | ^ 2021-07-10T03:45:50,699 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_getOverlappingSegments’: 2021-07-10T03:45:50,703 GatSegmentList/GatSegmentList.c:8685:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,703 8685 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,703 | ^~ 2021-07-10T03:45:50,707 GatSegmentList/GatSegmentList.c:8734:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,708 8734 | __pyx_t_1 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,708 | ^ 2021-07-10T03:45:50,731 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_overlapWithSegments’: 2021-07-10T03:45:50,735 GatSegmentList/GatSegmentList.c:9330:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,736 9330 | __pyx_t_5 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,736 | ^ 2021-07-10T03:45:50,740 GatSegmentList/GatSegmentList.c:9332:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,740 9332 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:45:50,740 | ^ 2021-07-10T03:45:50,747 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_intersectionWithSegments’: 2021-07-10T03:45:50,752 GatSegmentList/GatSegmentList.c:9778:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,752 9778 | __pyx_t_5 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,752 | ^ 2021-07-10T03:45:50,757 GatSegmentList/GatSegmentList.c:9780:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,757 9780 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:45:50,757 | ^ 2021-07-10T03:45:50,764 GatSegmentList/GatSegmentList.c:9910:50: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-10T03:45:50,764 9910 | __pyx_t_9 = (__pyx_v_other_segment.start <= __pyx_t_10); 2021-07-10T03:45:50,764 | ^~ 2021-07-10T03:45:50,768 GatSegmentList/GatSegmentList.c:9920:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,769 9920 | __pyx_t_9 = (__pyx_t_10 < __pyx_v_other_segment.end); 2021-07-10T03:45:50,769 | ^ 2021-07-10T03:45:50,779 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_36getLengthDistribution’: 2021-07-10T03:45:50,784 GatSegmentList/GatSegmentList.c:10368:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,784 10368 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_15; __pyx_v_idx++) { 2021-07-10T03:45:50,784 | ^ 2021-07-10T03:45:50,792 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_truncate’: 2021-07-10T03:45:50,797 GatSegmentList/GatSegmentList.c:10624:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,797 10624 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-10T03:45:50,797 | ^ 2021-07-10T03:45:50,803 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_subtract’: 2021-07-10T03:45:50,808 GatSegmentList/GatSegmentList.c:10975:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,809 10975 | __pyx_t_4 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,809 | ^ 2021-07-10T03:45:50,814 GatSegmentList/GatSegmentList.c:10977:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,814 10977 | __pyx_t_6 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:45:50,814 | ^ 2021-07-10T03:45:50,821 GatSegmentList/GatSegmentList.c:10991:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,822 10991 | __pyx_t_7 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-10T03:45:50,822 | ^~ 2021-07-10T03:45:50,827 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_summarize’: 2021-07-10T03:45:50,832 GatSegmentList/GatSegmentList.c:11487:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,833 11487 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-10T03:45:50,833 | ^ 2021-07-10T03:45:50,838 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_getFilledSegmentsFromStart’: 2021-07-10T03:45:50,844 GatSegmentList/GatSegmentList.c:11717:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,844 11717 | __pyx_t_5 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-10T03:45:50,844 | ^ 2021-07-10T03:45:50,851 GatSegmentList/GatSegmentList.c:11789:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,852 11789 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,852 | ^~ 2021-07-10T03:45:50,860 GatSegmentList/GatSegmentList.c:11891:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,860 11891 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,860 | ^~ 2021-07-10T03:45:50,872 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_getFilledSegmentsFromEnd’: 2021-07-10T03:45:50,877 GatSegmentList/GatSegmentList.c:12117:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_14GatSegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_14GatSegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,878 12117 | __pyx_t_5 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_14GatSegmentList_SegmentList *)__pyx_v_self->__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-10T03:45:50,878 | ^ 2021-07-10T03:45:50,885 GatSegmentList/GatSegmentList.c:12189:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,885 12189 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,885 | ^~ 2021-07-10T03:45:50,901 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_filter’: 2021-07-10T03:45:50,907 GatSegmentList/GatSegmentList.c:12649:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,907 12649 | __pyx_t_4 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,907 | ^ 2021-07-10T03:45:50,913 GatSegmentList/GatSegmentList.c:12651:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,913 12651 | __pyx_t_6 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:45:50,913 | ^ 2021-07-10T03:45:50,923 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_intersect’: 2021-07-10T03:45:50,930 GatSegmentList/GatSegmentList.c:13225:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,930 13225 | __pyx_t_4 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-10T03:45:50,930 | ^ 2021-07-10T03:45:50,936 GatSegmentList/GatSegmentList.c:13227:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,937 13227 | __pyx_t_6 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-10T03:45:50,937 | ^ 2021-07-10T03:45:50,949 GatSegmentList/GatSegmentList.c:13373:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,949 13373 | __pyx_t_7 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-10T03:45:50,949 | ^~ 2021-07-10T03:45:50,954 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_extend_segments’: 2021-07-10T03:45:50,961 GatSegmentList/GatSegmentList.c:13650:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,961 13650 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-10T03:45:50,961 | ^ 2021-07-10T03:45:50,967 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_expand_segments’: 2021-07-10T03:45:50,974 GatSegmentList/GatSegmentList.c:13861:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,974 13861 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_5; __pyx_v_idx++) { 2021-07-10T03:45:50,974 | ^ 2021-07-10T03:45:50,976 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_54shift’: 2021-07-10T03:45:50,983 GatSegmentList/GatSegmentList.c:14046:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,983 14046 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-10T03:45:50,983 | ^ 2021-07-10T03:45:50,987 GatSegmentList/GatSegmentList.c: In function ‘__pyx_f_14GatSegmentList_11SegmentList_sum’: 2021-07-10T03:45:50,994 GatSegmentList/GatSegmentList.c:14164:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:50,994 14164 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_4; __pyx_v_idx++) { 2021-07-10T03:45:50,994 | ^ 2021-07-10T03:45:50,996 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_58largest’: 2021-07-10T03:45:51,003 GatSegmentList/GatSegmentList.c:14343:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:51,003 14343 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_3; __pyx_v_idx++) { 2021-07-10T03:45:51,003 | ^ 2021-07-10T03:45:51,020 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_72asList’: 2021-07-10T03:45:51,028 GatSegmentList/GatSegmentList.c:15106:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:51,028 15106 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-10T03:45:51,028 | ^ 2021-07-10T03:45:51,029 GatSegmentList/GatSegmentList.c: In function ‘__pyx_pf_14GatSegmentList_11SegmentList_74asLengths’: 2021-07-10T03:45:51,037 GatSegmentList/GatSegmentList.c:15211:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T03:45:51,037 15211 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-10T03:45:51,037 | ^ 2021-07-10T03:45:51,122 GatSegmentList/GatSegmentList.c: In function ‘PyInit_GatSegmentList’: 2021-07-10T03:45:51,139 GatSegmentList/GatSegmentList.c:18632:98: error: ‘PyFileObject’ undeclared (first use in this function); did you mean ‘PyCellObject’? 2021-07-10T03:45:51,139 18632 | __pyx_ptype_14GatSegmentList_file = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "file", sizeof(PyFileObject), 0); if (unlikely(!__pyx_ptype_14GatSegmentList_file)) {__pyx_filename = __pyx_f[2]; __pyx_lineno = 112; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-10T03:45:51,139 | ^~~~~~~~~~~~ 2021-07-10T03:45:51,139 | PyCellObject 2021-07-10T03:45:51,140 GatSegmentList/GatSegmentList.c:18632:98: note: each undeclared identifier is reported only once for each function it appears in 2021-07-10T03:45:51,153 GatSegmentList/GatSegmentList.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T03:45:51,163 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,163 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,163 | ^ 2021-07-10T03:45:51,163 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,163 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,163 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,164 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:45:51,164 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:45:51,164 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,175 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,175 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,175 | ^ 2021-07-10T03:45:51,175 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,175 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,175 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,175 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T03:45:51,176 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T03:45:51,176 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,186 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,186 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,186 | ^ 2021-07-10T03:45:51,186 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,187 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,187 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,187 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:45:51,187 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:45:51,187 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,197 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,198 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,198 | ^ 2021-07-10T03:45:51,198 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,198 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,198 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,198 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:45:51,198 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:45:51,198 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,209 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,209 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,209 | ^ 2021-07-10T03:45:51,209 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,209 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,209 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,210 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T03:45:51,210 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T03:45:51,210 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,220 GatSegmentList/GatSegmentList.c:18940:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,220 18940 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,220 | ^ 2021-07-10T03:45:51,221 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,221 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,221 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,221 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:45:51,221 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:45:51,221 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,234 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,234 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,234 | ^ 2021-07-10T03:45:51,234 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,234 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,235 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,235 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:45:51,235 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:45:51,235 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,245 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,245 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,246 | ^ 2021-07-10T03:45:51,246 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,246 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,246 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,246 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T03:45:51,246 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T03:45:51,246 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,257 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,257 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,257 | ^ 2021-07-10T03:45:51,257 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,257 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,257 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,257 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:45:51,258 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:45:51,258 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,268 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,268 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,268 | ^ 2021-07-10T03:45:51,268 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,269 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,269 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,269 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:45:51,269 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:45:51,269 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,279 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,280 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,280 | ^ 2021-07-10T03:45:51,280 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,280 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,280 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,280 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T03:45:51,280 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T03:45:51,280 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,291 GatSegmentList/GatSegmentList.c:18956:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,291 18956 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T03:45:51,291 | ^ 2021-07-10T03:45:51,291 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T03:45:51,291 from /usr/include/python3.9/Python.h:97, 2021-07-10T03:45:51,291 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,292 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T03:45:51,292 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T03:45:51,292 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,327 GatSegmentList/GatSegmentList.c: In function ‘__Pyx_Raise’: 2021-07-10T03:45:51,337 GatSegmentList/GatSegmentList.c:19165:9: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-10T03:45:51,337 19165 | owned_instance = PyEval_CallObject(type, args); 2021-07-10T03:45:51,337 | ^~~~~~~~~~~~~~ 2021-07-10T03:45:51,338 In file included from /usr/include/python3.9/Python.h:145, 2021-07-10T03:45:51,338 from GatSegmentList/GatSegmentList.c:16: 2021-07-10T03:45:51,338 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-10T03:45:51,338 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-10T03:45:51,338 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,761 At top level: 2021-07-10T03:45:51,762 GatSegmentList/GatSegmentList.c:2296:12: warning: ‘__pyx_f_14GatSegmentList_cmpDouble’ defined but not used [-Wunused-function] 2021-07-10T03:45:51,762 2296 | static int __pyx_f_14GatSegmentList_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-10T03:45:51,763 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,763 GatSegmentList/GatSegmentList.c:2267:12: warning: ‘__pyx_f_14GatSegmentList_cmpPosition’ defined but not used [-Wunused-function] 2021-07-10T03:45:51,763 2267 | static int __pyx_f_14GatSegmentList_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-10T03:45:51,763 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,764 GatSegmentList/GatSegmentList.c:2212:12: warning: ‘__pyx_f_14GatSegmentList_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function] 2021-07-10T03:45:51,764 2212 | static int __pyx_f_14GatSegmentList_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-10T03:45:51,764 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T03:45:51,765 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T03:45:51,765 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T03:45:51,765 from GatSegmentList/GatSegmentList.c:324: 2021-07-10T03:45:51,766 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T03:45:51,766 1464 | _import_array(void) 2021-07-10T03:45:51,766 | ^~~~~~~~~~~~~ 2021-07-10T03:45:51,772 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T03:45:51,886 Building wheel for gat (setup.py): finished with status 'error' 2021-07-10T03:45:51,886 ERROR: Failed building wheel for gat 2021-07-10T03:45:51,887 Running setup.py clean for gat 2021-07-10T03:45:51,887 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-13kjidle/gat_1b1e15373fca416d9fc07ffe179badfb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-13kjidle/gat_1b1e15373fca416d9fc07ffe179badfb/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T03:45:52,931 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-10T03:45:52,932 warnings.warn( 2021-07-10T03:45:53,053 running clean 2021-07-10T03:45:53,055 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T03:45:53,058 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T03:45:53,061 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T03:45:53,062 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T03:45:53,062 removing 'build' 2021-07-10T03:45:53,147 Failed to build gat 2021-07-10T03:45:53,148 ERROR: Failed to build one or more wheels 2021-07-10T03:45:53,149 Exception information: 2021-07-10T03:45:53,149 Traceback (most recent call last): 2021-07-10T03:45:53,149 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T03:45:53,149 status = self.run(options, args) 2021-07-10T03:45:53,149 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T03:45:53,149 return func(self, options, args) 2021-07-10T03:45:53,149 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T03:45:53,149 raise CommandError( 2021-07-10T03:45:53,149 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T03:45:53,151 Removed build tracker: '/tmp/pip-req-tracker-9m_dc07k'