2021-07-10T04:37:27,216 Created temporary directory: /tmp/pip-ephem-wheel-cache-pi0c0jvn 2021-07-10T04:37:27,219 Created temporary directory: /tmp/pip-req-tracker-zm404hbc 2021-07-10T04:37:27,220 Initialized build tracking at /tmp/pip-req-tracker-zm404hbc 2021-07-10T04:37:27,220 Created build tracker: /tmp/pip-req-tracker-zm404hbc 2021-07-10T04:37:27,220 Entered build tracker: /tmp/pip-req-tracker-zm404hbc 2021-07-10T04:37:27,221 Created temporary directory: /tmp/pip-wheel-52mn8yv4 2021-07-10T04:37:27,255 1 location(s) to search for versions of biom-format: 2021-07-10T04:37:27,255 * https://pypi.org/simple/biom-format/ 2021-07-10T04:37:27,255 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-10T04:37:27,256 Getting page https://pypi.org/simple/biom-format/ 2021-07-10T04:37:27,257 Found index url https://pypi.org/simple 2021-07-10T04:37:27,451 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-10T04:37:27,451 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-10T04:37:27,452 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-10T04:37:27,452 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-10T04:37:27,452 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-10T04:37:27,452 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-10T04:37:27,453 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-10T04:37:27,453 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-10T04:37:27,453 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-10T04:37:27,454 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-10T04:37:27,454 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-10T04:37:27,454 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-10T04:37:27,471 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-10T04:37:27,472 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-10T04:37:27,472 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-10T04:37:27,473 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-10T04:37:27,473 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-10T04:37:27,473 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-10T04:37:27,474 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-10T04:37:27,477 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-10T04:37:27,496 Collecting biom-format==2.1.4 2021-07-10T04:37:27,497 Created temporary directory: /tmp/pip-unpack-595zdzg9 2021-07-10T04:37:27,774 Downloading biom-format-2.1.4.tar.gz (435 kB) 2021-07-10T04:37:28,156 Added biom-format==2.1.4 from https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 to build tracker '/tmp/pip-req-tracker-zm404hbc' 2021-07-10T04:37:28,157 Running setup.py (path:/tmp/pip-wheel-52mn8yv4/biom-format_99121d3d88444d2bb2a1e879f62a24db/setup.py) egg_info for package biom-format 2021-07-10T04:37:28,158 Created temporary directory: /tmp/pip-pip-egg-info-5leilrp2 2021-07-10T04:37:28,158 Running command python setup.py egg_info 2021-07-10T04:37:29,279 running egg_info 2021-07-10T04:37:29,282 creating /tmp/pip-pip-egg-info-5leilrp2/biom_format.egg-info 2021-07-10T04:37:29,283 writing /tmp/pip-pip-egg-info-5leilrp2/biom_format.egg-info/PKG-INFO 2021-07-10T04:37:29,285 writing dependency_links to /tmp/pip-pip-egg-info-5leilrp2/biom_format.egg-info/dependency_links.txt 2021-07-10T04:37:29,287 writing requirements to /tmp/pip-pip-egg-info-5leilrp2/biom_format.egg-info/requires.txt 2021-07-10T04:37:29,288 writing top-level names to /tmp/pip-pip-egg-info-5leilrp2/biom_format.egg-info/top_level.txt 2021-07-10T04:37:29,290 writing manifest file '/tmp/pip-pip-egg-info-5leilrp2/biom_format.egg-info/SOURCES.txt' 2021-07-10T04:37:29,663 reading manifest file '/tmp/pip-pip-egg-info-5leilrp2/biom_format.egg-info/SOURCES.txt' 2021-07-10T04:37:29,665 reading manifest template 'MANIFEST.in' 2021-07-10T04:37:29,680 no previously-included directories found matching 'docs/_build' 2021-07-10T04:37:29,681 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T04:37:29,681 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T04:37:29,682 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-10T04:37:29,682 adding license file 'COPYING.txt' 2021-07-10T04:37:29,688 writing manifest file '/tmp/pip-pip-egg-info-5leilrp2/biom_format.egg-info/SOURCES.txt' 2021-07-10T04:37:29,796 Source in /tmp/pip-wheel-52mn8yv4/biom-format_99121d3d88444d2bb2a1e879f62a24db has version 2.1.4, which satisfies requirement biom-format==2.1.4 from https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 2021-07-10T04:37:29,797 Removed biom-format==2.1.4 from https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 from build tracker '/tmp/pip-req-tracker-zm404hbc' 2021-07-10T04:37:29,801 Created temporary directory: /tmp/pip-unpack-ifjedsj9 2021-07-10T04:37:29,801 Building wheels for collected packages: biom-format 2021-07-10T04:37:29,805 Created temporary directory: /tmp/pip-wheel-rux2stom 2021-07-10T04:37:29,805 Building wheel for biom-format (setup.py): started 2021-07-10T04:37:29,806 Destination directory: /tmp/pip-wheel-rux2stom 2021-07-10T04:37:29,806 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-52mn8yv4/biom-format_99121d3d88444d2bb2a1e879f62a24db/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-52mn8yv4/biom-format_99121d3d88444d2bb2a1e879f62a24db/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-rux2stom 2021-07-10T04:37:30,939 running bdist_wheel 2021-07-10T04:37:31,136 running build 2021-07-10T04:37:31,137 running build_py 2021-07-10T04:37:31,270 creating build 2021-07-10T04:37:31,270 creating build/lib.linux-armv7l-3.9 2021-07-10T04:37:31,271 creating build/lib.linux-armv7l-3.9/biom 2021-07-10T04:37:31,272 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T04:37:31,274 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T04:37:31,279 copying biom/err.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T04:37:31,282 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T04:37:31,284 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T04:37:31,287 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T04:37:31,290 creating build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T04:37:31,291 copying biom/commands/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T04:37:31,294 copying biom/commands/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T04:37:31,298 copying biom/commands/table_converter.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T04:37:31,301 copying biom/commands/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T04:37:31,304 copying biom/commands/__init__.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T04:37:31,306 copying biom/commands/table_normalizer.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T04:37:31,309 copying biom/commands/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T04:37:31,312 copying biom/commands/table_validator.py -> build/lib.linux-armv7l-3.9/biom/commands 2021-07-10T04:37:31,316 creating build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-10T04:37:31,317 copying biom/interfaces/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces 2021-07-10T04:37:31,321 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T04:37:31,322 copying biom/interfaces/optparse/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T04:37:31,325 copying biom/interfaces/optparse/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T04:37:31,328 copying biom/interfaces/optparse/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse 2021-07-10T04:37:31,331 creating build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T04:37:31,332 copying biom/interfaces/optparse/config/subset_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T04:37:31,335 copying biom/interfaces/optparse/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T04:37:31,338 copying biom/interfaces/optparse/config/normalize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T04:37:31,340 copying biom/interfaces/optparse/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T04:37:31,342 copying biom/interfaces/optparse/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T04:37:31,345 copying biom/interfaces/optparse/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T04:37:31,347 copying biom/interfaces/optparse/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T04:37:31,350 copying biom/interfaces/optparse/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config 2021-07-10T04:37:31,353 creating build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T04:37:31,354 copying biom/interfaces/html/output_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T04:37:31,356 copying biom/interfaces/html/input_handler.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T04:37:31,359 copying biom/interfaces/html/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html 2021-07-10T04:37:31,361 creating build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T04:37:31,362 copying biom/interfaces/html/config/convert.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T04:37:31,365 copying biom/interfaces/html/config/normalize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T04:37:31,367 copying biom/interfaces/html/config/show_install_info.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T04:37:31,369 copying biom/interfaces/html/config/summarize_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T04:37:31,371 copying biom/interfaces/html/config/validate_table.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T04:37:31,373 copying biom/interfaces/html/config/add_metadata.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T04:37:31,376 copying biom/interfaces/html/config/__init__.py -> build/lib.linux-armv7l-3.9/biom/interfaces/html/config 2021-07-10T04:37:31,383 running build_ext 2021-07-10T04:37:31,389 building 'biom._filter' extension 2021-07-10T04:37:31,390 creating build/temp.linux-armv7l-3.9 2021-07-10T04:37:31,390 creating build/temp.linux-armv7l-3.9/biom 2021-07-10T04:37:31,391 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-10T04:37:31,808 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T04:37:31,808 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T04:37:31,808 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T04:37:31,808 from biom/_filter.c:258: 2021-07-10T04:37:31,808 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T04:37:31,809 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T04:37:31,809 | ^~~~~~~ 2021-07-10T04:37:32,000 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T04:37:32,004 biom/_filter.c:6806:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,004 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,004 | ^ 2021-07-10T04:37:32,005 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,006 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,006 from biom/_filter.c:24: 2021-07-10T04:37:32,006 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:32,006 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:32,006 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,010 biom/_filter.c:6806:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,010 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,011 | ^ 2021-07-10T04:37:32,011 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,011 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,011 from biom/_filter.c:24: 2021-07-10T04:37:32,011 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:32,011 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:32,011 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,016 biom/_filter.c:6806:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,016 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,016 | ^ 2021-07-10T04:37:32,016 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,016 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,016 from biom/_filter.c:24: 2021-07-10T04:37:32,017 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:32,017 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:32,017 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,021 biom/_filter.c:6806:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,021 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,021 | ^ 2021-07-10T04:37:32,022 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,022 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,022 from biom/_filter.c:24: 2021-07-10T04:37:32,022 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:32,022 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:32,022 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,026 biom/_filter.c:6806:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,027 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,027 | ^ 2021-07-10T04:37:32,027 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,027 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,027 from biom/_filter.c:24: 2021-07-10T04:37:32,027 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:32,027 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:32,027 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,032 biom/_filter.c:6806:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,032 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,032 | ^ 2021-07-10T04:37:32,032 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,032 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,032 from biom/_filter.c:24: 2021-07-10T04:37:32,033 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:32,033 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:32,033 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,037 biom/_filter.c:6822:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,037 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,037 | ^ 2021-07-10T04:37:32,037 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,037 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,038 from biom/_filter.c:24: 2021-07-10T04:37:32,038 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:32,038 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:32,038 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,041 biom/_filter.c:6822:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,041 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,041 | ^ 2021-07-10T04:37:32,041 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,041 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,042 from biom/_filter.c:24: 2021-07-10T04:37:32,042 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:32,042 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:32,042 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,046 biom/_filter.c:6822:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,046 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,046 | ^ 2021-07-10T04:37:32,046 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,046 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,047 from biom/_filter.c:24: 2021-07-10T04:37:32,047 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:32,047 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:32,047 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,051 biom/_filter.c:6822:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,051 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,051 | ^ 2021-07-10T04:37:32,051 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,052 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,052 from biom/_filter.c:24: 2021-07-10T04:37:32,052 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:32,052 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:32,052 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,056 biom/_filter.c:6822:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,056 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,056 | ^ 2021-07-10T04:37:32,056 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,056 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,057 from biom/_filter.c:24: 2021-07-10T04:37:32,057 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:32,057 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:32,057 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,061 biom/_filter.c:6822:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:32,061 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:32,061 | ^ 2021-07-10T04:37:32,062 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:32,062 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:32,062 from biom/_filter.c:24: 2021-07-10T04:37:32,062 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:32,062 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:32,062 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:32,180 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T04:37:32,180 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T04:37:32,180 from biom/_filter.c:258: 2021-07-10T04:37:32,180 At top level: 2021-07-10T04:37:32,180 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T04:37:32,181 1464 | _import_array(void) 2021-07-10T04:37:32,181 | ^~~~~~~~~~~~~ 2021-07-10T04:37:37,946 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_filter.o -o build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2021-07-10T04:37:38,089 building 'biom._transform' extension 2021-07-10T04:37:38,090 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-3.9/biom/_transform.o 2021-07-10T04:37:38,476 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T04:37:38,476 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T04:37:38,476 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T04:37:38,476 from biom/_transform.c:258: 2021-07-10T04:37:38,477 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T04:37:38,477 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T04:37:38,477 | ^~~~~~~ 2021-07-10T04:37:38,559 biom/_transform.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T04:37:38,561 biom/_transform.c:4050:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,562 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,562 | ^ 2021-07-10T04:37:38,563 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,563 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,563 from biom/_transform.c:24: 2021-07-10T04:37:38,563 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:38,563 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:38,563 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,566 biom/_transform.c:4050:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,566 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,566 | ^ 2021-07-10T04:37:38,566 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,566 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,567 from biom/_transform.c:24: 2021-07-10T04:37:38,567 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:38,567 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:38,567 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,569 biom/_transform.c:4050:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,569 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,570 | ^ 2021-07-10T04:37:38,570 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,570 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,570 from biom/_transform.c:24: 2021-07-10T04:37:38,570 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:38,570 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:38,570 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,573 biom/_transform.c:4050:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,573 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,573 | ^ 2021-07-10T04:37:38,573 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,573 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,574 from biom/_transform.c:24: 2021-07-10T04:37:38,574 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:38,574 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:38,574 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,576 biom/_transform.c:4050:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,576 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,577 | ^ 2021-07-10T04:37:38,577 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,577 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,577 from biom/_transform.c:24: 2021-07-10T04:37:38,577 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:38,577 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:38,577 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,580 biom/_transform.c:4050:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,580 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,580 | ^ 2021-07-10T04:37:38,580 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,580 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,580 from biom/_transform.c:24: 2021-07-10T04:37:38,581 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:38,581 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:38,581 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,584 biom/_transform.c:4066:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,584 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,584 | ^ 2021-07-10T04:37:38,585 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,585 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,585 from biom/_transform.c:24: 2021-07-10T04:37:38,585 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:38,585 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:38,585 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,588 biom/_transform.c:4066:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,588 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,588 | ^ 2021-07-10T04:37:38,588 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,588 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,588 from biom/_transform.c:24: 2021-07-10T04:37:38,588 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:38,589 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:38,589 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,591 biom/_transform.c:4066:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,591 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,591 | ^ 2021-07-10T04:37:38,592 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,592 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,592 from biom/_transform.c:24: 2021-07-10T04:37:38,592 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:38,592 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:38,592 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,595 biom/_transform.c:4066:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,595 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,595 | ^ 2021-07-10T04:37:38,595 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,595 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,595 from biom/_transform.c:24: 2021-07-10T04:37:38,595 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:38,596 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:38,596 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,598 biom/_transform.c:4066:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,598 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,598 | ^ 2021-07-10T04:37:38,599 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,599 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,599 from biom/_transform.c:24: 2021-07-10T04:37:38,599 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:38,599 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:38,599 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,602 biom/_transform.c:4066:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:38,602 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:38,602 | ^ 2021-07-10T04:37:38,602 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:38,602 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:38,602 from biom/_transform.c:24: 2021-07-10T04:37:38,602 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:38,603 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:38,603 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:38,716 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T04:37:38,717 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T04:37:38,717 from biom/_transform.c:258: 2021-07-10T04:37:38,717 At top level: 2021-07-10T04:37:38,718 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T04:37:38,718 1464 | _import_array(void) 2021-07-10T04:37:38,718 | ^~~~~~~~~~~~~ 2021-07-10T04:37:40,455 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_transform.o -o build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2021-07-10T04:37:40,573 building 'biom._subsample' extension 2021-07-10T04:37:40,574 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-3.9/biom/_subsample.o 2021-07-10T04:37:40,956 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T04:37:40,956 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T04:37:40,956 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T04:37:40,957 from biom/_subsample.c:258: 2021-07-10T04:37:40,957 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T04:37:40,957 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T04:37:40,957 | ^~~~~~~ 2021-07-10T04:37:41,049 biom/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T04:37:41,051 biom/_subsample.c:4465:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,052 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,052 | ^ 2021-07-10T04:37:41,052 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,052 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,052 from biom/_subsample.c:24: 2021-07-10T04:37:41,053 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:41,053 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:41,053 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,055 biom/_subsample.c:4465:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,055 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,055 | ^ 2021-07-10T04:37:41,055 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,055 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,055 from biom/_subsample.c:24: 2021-07-10T04:37:41,055 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:41,056 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:41,056 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,057 biom/_subsample.c:4465:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,057 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,057 | ^ 2021-07-10T04:37:41,058 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,058 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,058 from biom/_subsample.c:24: 2021-07-10T04:37:41,058 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:41,058 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:41,058 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,060 biom/_subsample.c:4465:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,060 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,060 | ^ 2021-07-10T04:37:41,060 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,060 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,060 from biom/_subsample.c:24: 2021-07-10T04:37:41,060 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:41,061 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:41,061 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,062 biom/_subsample.c:4465:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,062 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,063 | ^ 2021-07-10T04:37:41,063 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,063 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,063 from biom/_subsample.c:24: 2021-07-10T04:37:41,063 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:41,063 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:41,063 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,065 biom/_subsample.c:4465:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,065 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,065 | ^ 2021-07-10T04:37:41,065 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,065 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,066 from biom/_subsample.c:24: 2021-07-10T04:37:41,066 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:41,066 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:41,066 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,068 biom/_subsample.c:4481:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,068 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,069 | ^ 2021-07-10T04:37:41,069 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,069 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,069 from biom/_subsample.c:24: 2021-07-10T04:37:41,069 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:41,069 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:41,069 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,071 biom/_subsample.c:4481:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,071 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,071 | ^ 2021-07-10T04:37:41,071 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,071 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,072 from biom/_subsample.c:24: 2021-07-10T04:37:41,072 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:41,072 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:41,072 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,073 biom/_subsample.c:4481:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,074 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,074 | ^ 2021-07-10T04:37:41,074 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,074 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,074 from biom/_subsample.c:24: 2021-07-10T04:37:41,074 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:41,074 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:41,074 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,076 biom/_subsample.c:4481:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,076 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,076 | ^ 2021-07-10T04:37:41,076 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,077 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,077 from biom/_subsample.c:24: 2021-07-10T04:37:41,077 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:41,077 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:41,077 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,079 biom/_subsample.c:4481:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,079 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,079 | ^ 2021-07-10T04:37:41,079 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,079 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,079 from biom/_subsample.c:24: 2021-07-10T04:37:41,079 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T04:37:41,079 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T04:37:41,079 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,081 biom/_subsample.c:4481:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T04:37:41,081 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T04:37:41,081 | ^ 2021-07-10T04:37:41,082 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T04:37:41,082 from /usr/include/python3.9/Python.h:97, 2021-07-10T04:37:41,082 from biom/_subsample.c:24: 2021-07-10T04:37:41,082 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T04:37:41,082 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T04:37:41,082 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T04:37:41,210 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T04:37:41,211 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T04:37:41,211 from biom/_subsample.c:258: 2021-07-10T04:37:41,211 At top level: 2021-07-10T04:37:41,211 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T04:37:41,212 1464 | _import_array(void) 2021-07-10T04:37:41,212 | ^~~~~~~~~~~~~ 2021-07-10T04:37:44,591 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_subsample.o -o build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2021-07-10T04:37:44,718 running build_scripts 2021-07-10T04:37:44,719 creating build/scripts-3.9 2021-07-10T04:37:44,720 copying scripts/biom -> build/scripts-3.9 2021-07-10T04:37:44,723 copying scripts/serve-biom -> build/scripts-3.9 2021-07-10T04:37:44,724 changing mode of build/scripts-3.9/serve-biom from 644 to 755 2021-07-10T04:37:44,733 installing to build/bdist.linux-armv7l/wheel 2021-07-10T04:37:44,733 running install 2021-07-10T04:37:44,735 running install_lib 2021-07-10T04:37:44,739 creating build/bdist.linux-armv7l 2021-07-10T04:37:44,739 creating build/bdist.linux-armv7l/wheel 2021-07-10T04:37:44,741 creating build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,742 copying build/lib.linux-armv7l-3.9/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,744 copying build/lib.linux-armv7l-3.9/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,751 creating build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-10T04:37:44,752 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T04:37:44,754 creating build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T04:37:44,755 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T04:37:44,757 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/normalize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T04:37:44,759 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T04:37:44,761 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T04:37:44,763 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T04:37:44,765 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T04:37:44,767 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html/config 2021-07-10T04:37:44,768 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T04:37:44,770 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T04:37:44,772 copying build/lib.linux-armv7l-3.9/biom/interfaces/html/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/html 2021-07-10T04:37:44,774 copying build/lib.linux-armv7l-3.9/biom/interfaces/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces 2021-07-10T04:37:44,776 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T04:37:44,778 creating build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T04:37:44,779 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/subset_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T04:37:44,781 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/convert.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T04:37:44,783 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/normalize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T04:37:44,785 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T04:37:44,787 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T04:37:44,789 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/validate_table.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T04:37:44,791 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T04:37:44,794 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/config/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse/config 2021-07-10T04:37:44,795 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/output_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T04:37:44,798 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/input_handler.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T04:37:44,800 copying build/lib.linux-armv7l-3.9/biom/interfaces/optparse/__init__.py -> build/bdist.linux-armv7l/wheel/biom/interfaces/optparse 2021-07-10T04:37:44,802 copying build/lib.linux-armv7l-3.9/biom/err.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,804 copying build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,817 copying build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,824 copying build/lib.linux-armv7l-3.9/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,826 copying build/lib.linux-armv7l-3.9/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,828 copying build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,838 creating build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T04:37:44,839 copying build/lib.linux-armv7l-3.9/biom/commands/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T04:37:44,842 copying build/lib.linux-armv7l-3.9/biom/commands/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T04:37:44,844 copying build/lib.linux-armv7l-3.9/biom/commands/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T04:37:44,847 copying build/lib.linux-armv7l-3.9/biom/commands/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T04:37:44,849 copying build/lib.linux-armv7l-3.9/biom/commands/__init__.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T04:37:44,851 copying build/lib.linux-armv7l-3.9/biom/commands/table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T04:37:44,853 copying build/lib.linux-armv7l-3.9/biom/commands/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T04:37:44,856 copying build/lib.linux-armv7l-3.9/biom/commands/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/commands 2021-07-10T04:37:44,859 copying build/lib.linux-armv7l-3.9/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T04:37:44,861 running install_egg_info 2021-07-10T04:37:44,888 running egg_info 2021-07-10T04:37:44,888 writing biom_format.egg-info/PKG-INFO 2021-07-10T04:37:44,890 writing dependency_links to biom_format.egg-info/dependency_links.txt 2021-07-10T04:37:44,892 writing requirements to biom_format.egg-info/requires.txt 2021-07-10T04:37:44,894 writing top-level names to biom_format.egg-info/top_level.txt 2021-07-10T04:37:44,909 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-10T04:37:44,920 reading manifest template 'MANIFEST.in' 2021-07-10T04:37:44,932 no previously-included directories found matching 'docs/_build' 2021-07-10T04:37:44,933 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T04:37:44,934 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T04:37:44,935 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-10T04:37:44,935 adding license file 'COPYING.txt' 2021-07-10T04:37:44,943 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-10T04:37:44,945 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1.4-py3.9.egg-info 2021-07-10T04:37:44,956 running install_scripts 2021-07-10T04:37:45,041 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data 2021-07-10T04:37:45,041 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts 2021-07-10T04:37:45,042 copying build/scripts-3.9/biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts 2021-07-10T04:37:45,044 copying build/scripts-3.9/serve-biom -> build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts 2021-07-10T04:37:45,046 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts/biom to 755 2021-07-10T04:37:45,046 changing mode of build/bdist.linux-armv7l/wheel/biom_format-2.1.4.data/scripts/serve-biom to 755 2021-07-10T04:37:45,073 adding license file "COPYING.txt" (matched pattern "COPYING*") 2021-07-10T04:37:45,077 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.4.dist-info/WHEEL 2021-07-10T04:37:45,080 creating '/tmp/pip-wheel-rux2stom/biom_format-2.1.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T04:37:45,082 adding 'biom/__init__.py' 2021-07-10T04:37:45,174 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T04:37:45,222 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T04:37:45,252 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T04:37:45,255 adding 'biom/err.py' 2021-07-10T04:37:45,257 adding 'biom/exception.py' 2021-07-10T04:37:45,259 adding 'biom/parse.py' 2021-07-10T04:37:45,276 adding 'biom/table.py' 2021-07-10T04:37:45,279 adding 'biom/util.py' 2021-07-10T04:37:45,282 adding 'biom/commands/__init__.py' 2021-07-10T04:37:45,283 adding 'biom/commands/installation_informer.py' 2021-07-10T04:37:45,284 adding 'biom/commands/metadata_adder.py' 2021-07-10T04:37:45,286 adding 'biom/commands/table_converter.py' 2021-07-10T04:37:45,288 adding 'biom/commands/table_normalizer.py' 2021-07-10T04:37:45,289 adding 'biom/commands/table_subsetter.py' 2021-07-10T04:37:45,291 adding 'biom/commands/table_summarizer.py' 2021-07-10T04:37:45,293 adding 'biom/commands/table_validator.py' 2021-07-10T04:37:45,295 adding 'biom/interfaces/__init__.py' 2021-07-10T04:37:45,297 adding 'biom/interfaces/html/__init__.py' 2021-07-10T04:37:45,298 adding 'biom/interfaces/html/input_handler.py' 2021-07-10T04:37:45,299 adding 'biom/interfaces/html/output_handler.py' 2021-07-10T04:37:45,301 adding 'biom/interfaces/html/config/__init__.py' 2021-07-10T04:37:45,303 adding 'biom/interfaces/html/config/add_metadata.py' 2021-07-10T04:37:45,304 adding 'biom/interfaces/html/config/convert.py' 2021-07-10T04:37:45,305 adding 'biom/interfaces/html/config/normalize_table.py' 2021-07-10T04:37:45,307 adding 'biom/interfaces/html/config/show_install_info.py' 2021-07-10T04:37:45,308 adding 'biom/interfaces/html/config/summarize_table.py' 2021-07-10T04:37:45,309 adding 'biom/interfaces/html/config/validate_table.py' 2021-07-10T04:37:45,311 adding 'biom/interfaces/optparse/__init__.py' 2021-07-10T04:37:45,313 adding 'biom/interfaces/optparse/input_handler.py' 2021-07-10T04:37:45,314 adding 'biom/interfaces/optparse/output_handler.py' 2021-07-10T04:37:45,316 adding 'biom/interfaces/optparse/config/__init__.py' 2021-07-10T04:37:45,317 adding 'biom/interfaces/optparse/config/add_metadata.py' 2021-07-10T04:37:45,319 adding 'biom/interfaces/optparse/config/convert.py' 2021-07-10T04:37:45,320 adding 'biom/interfaces/optparse/config/normalize_table.py' 2021-07-10T04:37:45,322 adding 'biom/interfaces/optparse/config/show_install_info.py' 2021-07-10T04:37:45,323 adding 'biom/interfaces/optparse/config/subset_table.py' 2021-07-10T04:37:45,325 adding 'biom/interfaces/optparse/config/summarize_table.py' 2021-07-10T04:37:45,326 adding 'biom/interfaces/optparse/config/validate_table.py' 2021-07-10T04:37:45,329 adding 'biom_format-2.1.4.data/scripts/biom' 2021-07-10T04:37:45,330 adding 'biom_format-2.1.4.data/scripts/serve-biom' 2021-07-10T04:37:45,332 adding 'biom_format-2.1.4.dist-info/COPYING.txt' 2021-07-10T04:37:45,333 adding 'biom_format-2.1.4.dist-info/METADATA' 2021-07-10T04:37:45,334 adding 'biom_format-2.1.4.dist-info/WHEEL' 2021-07-10T04:37:45,335 adding 'biom_format-2.1.4.dist-info/top_level.txt' 2021-07-10T04:37:45,337 adding 'biom_format-2.1.4.dist-info/RECORD' 2021-07-10T04:37:45,345 removing build/bdist.linux-armv7l/wheel 2021-07-10T04:37:45,487 Building wheel for biom-format (setup.py): finished with status 'done' 2021-07-10T04:37:45,494 Created wheel for biom-format: filename=biom_format-2.1.4-cp39-cp39-linux_armv7l.whl size=387004 sha256=b5ca1e518cddf6b4c1a9c1dbd3e186b9a6133758fa1aa307f3f050bd3311c0f9 2021-07-10T04:37:45,495 Stored in directory: /tmp/pip-ephem-wheel-cache-pi0c0jvn/wheels/ae/df/a8/d1feead0c859360da4dd0278ec78b2c5780e78e1a420a0a080 2021-07-10T04:37:45,506 Successfully built biom-format 2021-07-10T04:37:45,523 Removed build tracker: '/tmp/pip-req-tracker-zm404hbc'