2021-07-10T05:37:43,692 Created temporary directory: /tmp/pip-ephem-wheel-cache-_9jsfjym
2021-07-10T05:37:43,695 Created temporary directory: /tmp/pip-req-tracker-xjp_ssnk
2021-07-10T05:37:43,695 Initialized build tracking at /tmp/pip-req-tracker-xjp_ssnk
2021-07-10T05:37:43,695 Created build tracker: /tmp/pip-req-tracker-xjp_ssnk
2021-07-10T05:37:43,696 Entered build tracker: /tmp/pip-req-tracker-xjp_ssnk
2021-07-10T05:37:43,696 Created temporary directory: /tmp/pip-wheel-3hvs1o8j
2021-07-10T05:37:43,730 1 location(s) to search for versions of mdtraj:
2021-07-10T05:37:43,730 * https://pypi.org/simple/mdtraj/
2021-07-10T05:37:43,730 Fetching project page and analyzing links: https://pypi.org/simple/mdtraj/
2021-07-10T05:37:43,731 Getting page https://pypi.org/simple/mdtraj/
2021-07-10T05:37:43,732 Found index url https://pypi.org/simple
2021-07-10T05:37:43,855   Found link https://files.pythonhosted.org/packages/cb/82/93ced2a2e5d37f36330fe3e74081fdd4ce8f933ebd16b4fab14cb5c6c29c/mdtraj-0.3.tar.gz#sha256=4cbd8bbeebacd0fae186244b817edd5dfd7546426fbe7bc2a80002644baa9b8a (from https://pypi.org/simple/mdtraj/), version: 0.3
2021-07-10T05:37:43,855   Found link https://files.pythonhosted.org/packages/bb/79/e0703632501b528c6d4fb87e672aa68e431579e61ddf15b9178554e45a8e/mdtraj-0.3.1.tar.gz#sha256=86d8b14ea7e8757475f32e346a05e7d8bb0e374d6c7b89a7d7fa9ba7f76acd09 (from https://pypi.org/simple/mdtraj/), version: 0.3.1
2021-07-10T05:37:43,855   Skipping link: unsupported archive format: .exe: https://files.pythonhosted.org/packages/76/8f/0e6b0243ec53f87b024e84b26b0ced2ca716dd347ac459ef5c65e887fd02/mdtraj-0.3.1.win-amd64-py2.7.exe#sha256=a1a15f2f5a5d840e5c790e28339c060839926ee18079567f90273c8f1f3ae064 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,856   Found link https://files.pythonhosted.org/packages/6e/2c/5e68a951b1d038ce32d5e0e128f56ee7ff0ea0ce933e7c05a2b9a2c56b9d/mdtraj-0.4.0.tar.gz#sha256=8eb89b88c3e900e0594ebbaff55c07a59959411a69c7e436933b899e81d7d3e4 (from https://pypi.org/simple/mdtraj/), version: 0.4.0
2021-07-10T05:37:43,856   Found link https://files.pythonhosted.org/packages/83/4d/820da3023ad7d89e3dfcdfca11a298ded20d99383f43ce2bdef30c120d8e/mdtraj-0.4.1.tar.gz#sha256=0b0e6c28aa596e442ea3763c7ffdcc6f714152c330b9b799b088f5c4bd8bd553 (from https://pypi.org/simple/mdtraj/), version: 0.4.1
2021-07-10T05:37:43,856   Found link https://files.pythonhosted.org/packages/c3/6d/3c211650aacc169d271d86de954d08f96b835e7f0d08de472cf7fe5b41b3/mdtraj-0.4.3.tar.gz#sha256=52699d9bc832ee42da60fdb7dc1348937339e75a56ebb384dc31b1f64c57b455 (from https://pypi.org/simple/mdtraj/), version: 0.4.3
2021-07-10T05:37:43,856   Skipping link: unsupported archive format: .msi: https://files.pythonhosted.org/packages/d7/ad/6610b9029c85be5fe896b9a6d0bd6a7e960db1ec751ff7e6a36594eebd05/mdtraj-0.4.3.win32-py2.6.msi#sha256=fa4828c68e0bad725f4f82dce6fda7ea482307b6a3e2dc57365320973b3b4ec7 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,857   Skipping link: unsupported archive format: .msi: https://files.pythonhosted.org/packages/f2/d0/2ea0d56c38693e121a8b646a688cbb3f7d1d5d5dc3a89893e358e70cf4e3/mdtraj-0.4.3.win32-py2.7.msi#sha256=c382d9baff2c2bbcc7368b85729643016efcb990dee7ab46c9124895d10a6c0f (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,857   Skipping link: unsupported archive format: .msi: https://files.pythonhosted.org/packages/c5/fa/7f4579a0eb11ea6eab4cf94a0b10ca9bebdeeee53e022ad7a66d7a3c5dfb/mdtraj-0.4.3.win32-py3.2.msi#sha256=c61705d67927947a286ba9c7c39a3f82ea24ecbee5ab52a2f75adb6dd2dfd0a5 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,857   Skipping link: unsupported archive format: .msi: https://files.pythonhosted.org/packages/28/e5/cb27f0a2b7a3c604704fe9fa92d8b3f5e82bd3a5a50f17548d79875618d7/mdtraj-0.4.3.win32-py3.3.msi#sha256=0b2a969e3ccf22825fceeaaf2acedc7b1ab0efd44f88b3262feae66bb246e6d4 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,857   Found link https://files.pythonhosted.org/packages/e5/88/d95a7bf9ab9f170c4a765b24aef3249f8b48419eb8200c0e6e0cefb8df27/mdtraj-0.4.3.zip#sha256=183b42cb33c97ffc8321eea42a8f9bf1dc8daf70fcd77ed1a2f010ceb1aa6ddc (from https://pypi.org/simple/mdtraj/), version: 0.4.3
2021-07-10T05:37:43,858   Found link https://files.pythonhosted.org/packages/d7/77/493f388512cb4e90e787ed60e206b053c4999f59ea8e473f182c041e7bb5/mdtraj-0.5.0.tar.gz#sha256=067baaef07eccfc5d5b4d0cd4bb18f92fb23bf405b42a650443fe32c1b24ed7b (from https://pypi.org/simple/mdtraj/), version: 0.5.0
2021-07-10T05:37:43,858   Skipping link: unsupported archive format: .msi: https://files.pythonhosted.org/packages/0e/5a/a74bf3100d9fa5ff67cf6b271c8ad0254402f96f68da5b4015bdd62313fd/mdtraj-0.5.0.win32-py2.7.msi#sha256=c339f8245f776be3e62e1ce480afc14757c371137c127e3658bd0f4eba4176e3 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,858   Skipping link: unsupported archive format: .msi: https://files.pythonhosted.org/packages/58/b4/71dae8ecfac23b90e0bbcbcb21bc3770277d42717e7476cc6502b07a2b35/mdtraj-0.5.0.win32-py3.2.msi#sha256=b65fe9caef8a65d1431bf14b0440eff07b53ecec00908a2254050778e2a69f1c (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,858   Skipping link: unsupported archive format: .msi: https://files.pythonhosted.org/packages/16/bc/e7b082171abfe965d04cfafd5851541644c0cb831a6a2a24167986cd1fe1/mdtraj-0.5.0.win32-py3.3.msi#sha256=5f9af92b3f1cd50e8cbeb5ede2f35175d8e66f081b0dccc9f828209e2c649ece (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,858   Found link https://files.pythonhosted.org/packages/f3/91/344c3301a96d586b7280b9fcc70c59a804df499219f0fbb750c8b2bfb818/mdtraj-0.5.0.zip#sha256=7f675810a15632557b6974402b52c2a317f65e4aefb21cc4fb9e5f59c2a6a035 (from https://pypi.org/simple/mdtraj/), version: 0.5.0
2021-07-10T05:37:43,859   Found link https://files.pythonhosted.org/packages/0f/d3/df89fa19d0572c58f82e17d57a1409cefb7525b0c96930876f42563bc937/mdtraj-0.5.1.tar.gz#sha256=bbfe583ffc3026d8125a99776aafaccc64af6f2b11d26372c025cc33dc5266ec (from https://pypi.org/simple/mdtraj/), version: 0.5.1
2021-07-10T05:37:43,859   Found link https://files.pythonhosted.org/packages/07/17/04c7422cc1092ca74b51da1f9ba4f76e38b53ef6f35bf4ad4bb65301c316/mdtraj-0.5.1.zip#sha256=258a81b7b500493e36ea590f7222ae06df4782a6d5de4d04a3569a831a98584b (from https://pypi.org/simple/mdtraj/), version: 0.5.1
2021-07-10T05:37:43,859   Found link https://files.pythonhosted.org/packages/59/41/0768b99fcb72f568950c767a0866b92d9a328f9b3c848e3f0f6426c49bc7/mdtraj-0.6.0.tar.gz#sha256=e5b41177be9a6f3527b6af210dc70e36607dde8cd525cd40ebe1c002d69c98a5 (from https://pypi.org/simple/mdtraj/), version: 0.6.0
2021-07-10T05:37:43,860   Found link https://files.pythonhosted.org/packages/85/33/c0708f41cc090a886342325cb99db876b555a181ee18a3a1086b1b87dfd1/mdtraj-0.6.0.zip#sha256=7ebfc1a1249d973f203f6e141211cdb1c5fa8a43f7058f19304d0269378edccc (from https://pypi.org/simple/mdtraj/), version: 0.6.0
2021-07-10T05:37:43,860   Found link https://files.pythonhosted.org/packages/b1/b4/6219cf2656a223f06d3e40d5098fa186aba73ac5d3cbb08348fa73bf0c7e/mdtraj-0.6.1.tar.gz#sha256=e38d3b2c742c01014e57f83d3f6ddfe00e8dac95730d3335f3f3a715c8f9188a (from https://pypi.org/simple/mdtraj/), version: 0.6.1
2021-07-10T05:37:43,860   Found link https://files.pythonhosted.org/packages/59/3e/3184bc16bbf5f14ea3148552ae43ebfb28e3abc6ea08a76e3e31b81f938a/mdtraj-0.6.1.zip#sha256=49bb8956ce3bc8f43dfb7fdf0897217a2e170cb7180311951c323af62aee3388 (from https://pypi.org/simple/mdtraj/), version: 0.6.1
2021-07-10T05:37:43,860   Found link https://files.pythonhosted.org/packages/2d/7b/67e57aeabcd1383fac5d169f866836e00410a41f6311d4c3e1d809a9c9e8/mdtraj-0.7.0.tar.gz#sha256=3a2ba2cf422c636ad743f6e1d6b2b75c7830788f78d37e0749a49ef311919c55 (from https://pypi.org/simple/mdtraj/), version: 0.7.0
2021-07-10T05:37:43,861   Found link https://files.pythonhosted.org/packages/bb/31/a472847da32caa824a73c3794f5816005b2a213f6c35df20dc55d1d07be8/mdtraj-0.7.0.zip#sha256=b45210e1d7eabdb9ff30338bcbbbc6d7624720ddd7d76c9ceb88f2baaaa5289f (from https://pypi.org/simple/mdtraj/), version: 0.7.0
2021-07-10T05:37:43,861   Found link https://files.pythonhosted.org/packages/3a/f1/de324881e0c838b8eda4222a02ac5b0595e52c40225046a67e845db5fb35/mdtraj-0.8.0.tar.gz#sha256=1d931c45e0bb258211d820b222ea0be23f03339f6057e1b9d5845283a406c1f3 (from https://pypi.org/simple/mdtraj/), version: 0.8.0
2021-07-10T05:37:43,861   Found link https://files.pythonhosted.org/packages/d8/87/01f61e5cabbf391ed20ec15854454f7bd76d752413be983654c2de738292/mdtraj-0.8.0.zip#sha256=d255f9f0509205109aa08a853fdb004cac9e8075b5ba370d17903519ff7c0f39 (from https://pypi.org/simple/mdtraj/), version: 0.8.0
2021-07-10T05:37:43,862   Found link https://files.pythonhosted.org/packages/77/72/4f559e05820f485e2f1542154660ed9746e4822a097022ab79a5afba53a1/mdtraj-0.9.0.tar.gz#sha256=cf0603b650e5564a0ec885f19c5c112aeedb2f9918260d39e49ddc52558d2085 (from https://pypi.org/simple/mdtraj/), version: 0.9.0
2021-07-10T05:37:43,862   Skipping link: unsupported archive format: .msi: https://files.pythonhosted.org/packages/48/71/d6bf7c8e7fa50e826a16c89bf00aa636953aa6efa462d01f04543f51536d/mdtraj-0.9.0.win32-py2.7.msi#sha256=cdd6201437a8c06dc75844af7710c26fc2ebe1984bb80448bafec946ca744599 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,862   Found link https://files.pythonhosted.org/packages/5a/a4/ab877500acc0e0b953d8ffa8de21719fcbb78749c2fd682f82601a0f3a3d/mdtraj-0.9.0.zip#sha256=dcc380dbcea821f50bceb6f3492d46122a6b15336a12cb50cd49d31d9700e687 (from https://pypi.org/simple/mdtraj/), version: 0.9.0
2021-07-10T05:37:43,862   Found link https://files.pythonhosted.org/packages/de/4b/cb27df1a4b50e52cbbd33d8e123d3f252e108a263a8389a8297e5810b453/mdtraj-1.0.0.tar.gz#sha256=13ad540294bab66f794a16e4c703297e3c0a35b5ea6a62d569d69ce98e25341f (from https://pypi.org/simple/mdtraj/), version: 1.0.0
2021-07-10T05:37:43,863   Found link https://files.pythonhosted.org/packages/8e/36/9fd92ca45c2b84384f78020524edb9dfd2d4cefc0595472cc60b64af62ed/mdtraj-1.0.0.zip#sha256=8aa8e04038453b3201d906e1ecb01cb4261f0e9230d72e62786255f68e09d86d (from https://pypi.org/simple/mdtraj/), version: 1.0.0
2021-07-10T05:37:43,863   Found link https://files.pythonhosted.org/packages/dd/e2/b7a137d7bff0dba7347d3ad2462e811bdcfc8de0bc3f6b78f93c2af78a58/mdtraj-1.1.0.tar.gz#sha256=ff1b089b9231b17de27f1f4d1eb6298129351269eca290381fdc06977edee37a (from https://pypi.org/simple/mdtraj/), version: 1.1.0
2021-07-10T05:37:43,863   Found link https://files.pythonhosted.org/packages/13/c2/b758f772bbf35fe8069509d59c701de491f2cf3c9b63658e4ddc3cfcf468/mdtraj-1.1.0.zip#sha256=fc842a7adf741036580c82afae83dab547578bd6dd59d3e93956d8a0fd5e07ad (from https://pypi.org/simple/mdtraj/), version: 1.1.0
2021-07-10T05:37:43,880   Skipping link: none of the wheel's tags (cp27-none-win32) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/1e/bc/4d4fd31a09fbed9d2e1e6a90fa0657e5c22f40b9ae542f932854b20b867a/mdtraj-1.2.0-cp27-none-win32.whl#sha256=43ea879b8772eed171d7244a9feb5f04da3e7c902e8a7d1aac12a3de67a9df89 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,881   Skipping link: none of the wheel's tags (cp33-none-win32) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/59/d7/f4809991e14a568656957523111763cd3105ad3f63d53b470643f3c391c7/mdtraj-1.2.0-cp33-none-win32.whl#sha256=af120862f79ea4bebcbf3f246a0336ebe23f0ecda7a484f52db999a86eb0091e (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,882   Skipping link: none of the wheel's tags (cp34-none-win32) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/47/ec/0da56abb0793e6c03ca647bb66a01e175e9cd80623b77cc3eee7aa4b0169/mdtraj-1.2.0-cp34-none-win32.whl#sha256=e4fbe22ffbcebc9f7695b0cbab441cc04ad6c998ac3232bb1156c45934b89bfa (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,882   Found link https://files.pythonhosted.org/packages/b9/7d/a2878b6c3da5e04ad15f906235bbf6507d5b801465b6a7626cd7f6e33289/mdtraj-1.2.0.tar.gz#sha256=7dff42a449a4858ab5db9b7f1528ae314b0d98c6ebd432307de4f14be6f446e0 (from https://pypi.org/simple/mdtraj/), version: 1.2.0
2021-07-10T05:37:43,882   Found link https://files.pythonhosted.org/packages/ad/60/131151a1dacdf1fb8aa2afb20d2f7865802ee8a654f5c46bf0990cd44b77/mdtraj-1.2.0.zip#sha256=b6e930608c366b86ff6523485264788caf12b7f5c8be369bbc98ee31d569551e (from https://pypi.org/simple/mdtraj/), version: 1.2.0
2021-07-10T05:37:43,883   Found link https://files.pythonhosted.org/packages/19/43/14b0d39a19b9bf7129c1d1c00fb3ef6b201dd6ca26d4b5d82e06d5523931/mdtraj-1.3.0.tar.gz#sha256=233089791c6fbe00f6208ca412a09c1353a755866311ca3e663a1193ecbfe342 (from https://pypi.org/simple/mdtraj/), version: 1.3.0
2021-07-10T05:37:43,883   Found link https://files.pythonhosted.org/packages/52/1c/5241b6d7eedc4d1c17a5b87665216f5781efdd7b3ad742fec151ca5db5f8/mdtraj-1.3.0.zip#sha256=7be7a99823c08ef93f01483815774c0ac9aefd8c3790d0f9069fe6685bf3a45b (from https://pypi.org/simple/mdtraj/), version: 1.3.0
2021-07-10T05:37:43,883   Found link https://files.pythonhosted.org/packages/97/1c/bce6eb773069063889ddf3969cdbd547697cca8909de4a285721bd4b936c/mdtraj-1.4.0.tar.gz#sha256=26fc6c481cb472e66238542f6071d53fba45ff7fd542914b53fea2bb28c8f272 (from https://pypi.org/simple/mdtraj/), version: 1.4.0
2021-07-10T05:37:43,883   Found link https://files.pythonhosted.org/packages/20/4d/0fdff16d6d1b9a1e1e0d6f0391226c2a0791810e07772fa7e3b6713e5c9a/mdtraj-1.4.0.zip#sha256=6337fe3cc50c9ad1c745019e84175dd3c56b108b7f3000e1296549969c6916de (from https://pypi.org/simple/mdtraj/), version: 1.4.0
2021-07-10T05:37:43,884   Found link https://files.pythonhosted.org/packages/37/bb/c7261dd1fc35105898af6de578719e8eb18aa33f70dd38a4257ff68118c4/mdtraj-1.4.1.tar.gz#sha256=8ada69d633ef93baf2dbfd572881343e7373616720087dd2d7767e4c371c17ac (from https://pypi.org/simple/mdtraj/), version: 1.4.1
2021-07-10T05:37:43,884   Found link https://files.pythonhosted.org/packages/eb/b4/4fd2c5d63e4a1f10047df8a3f83071d41ba9203abf1a86d381f2c16cef94/mdtraj-1.4.1.zip#sha256=b58cb4ff9cc191871b06d71768128584753a8136d09cd8ff5445da333bc283c9 (from https://pypi.org/simple/mdtraj/), version: 1.4.1
2021-07-10T05:37:43,884   Found link https://files.pythonhosted.org/packages/af/43/7594de45f455b32c5a057bc323336461a7f4299a5e93dfb57038e0c7c99c/mdtraj-1.4.2.tar.gz#sha256=7a1fa2ba877193f7d99d8c2fd9b0200fb124c8a2fbcbfa4e701a8b52718fa6a0 (from https://pypi.org/simple/mdtraj/), version: 1.4.2
2021-07-10T05:37:43,884   Found link https://files.pythonhosted.org/packages/79/d7/7ec8477e4293f027acd7695ae8d493eb7985aec5666ce3d117d48794fa5c/mdtraj-1.4.2.zip#sha256=dc1c31b956ad5e88590048abaaaa33bad58887262e94e2921c070d9e6d5fd5df (from https://pypi.org/simple/mdtraj/), version: 1.4.2
2021-07-10T05:37:43,885   Found link https://files.pythonhosted.org/packages/f8/36/a0a83efc5f48db485bdefd15a7ade8a80876bbe178318cfa14ced3cb0c87/mdtraj-1.5.0.tar.gz#sha256=08a9af719ecd4754f12e41031485c5820bf4a51371909e4f0060d96e4998c265 (from https://pypi.org/simple/mdtraj/), version: 1.5.0
2021-07-10T05:37:43,885   Found link https://files.pythonhosted.org/packages/b2/2c/1cfc1f7879ea82293afca1edd595f3ca39e25f8411627175e88ea6819f83/mdtraj-1.5.0.zip#sha256=e56dcf4b7be97c007692b6c6758f8fc8b84811e666de1c3836631e697dab9394 (from https://pypi.org/simple/mdtraj/), version: 1.5.0
2021-07-10T05:37:43,886   Skipping link: none of the wheel's tags (cp27-none-macosx_10_5_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/a8/24/4c267bc9753b3d1218b1d9c9220d3811d71eea2cfba590f512bcbb2a9c3b/mdtraj-1.5.1-cp27-none-macosx_10_5_x86_64.whl#sha256=0f9e97389fcf01c60984b7a33b04529ea440d5a79bad90ee8781de33c27fb9a0 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,886   Skipping link: none of the wheel's tags (cp34-cp34m-macosx_10_5_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/5e/07/f6d8703864e39672cb420701e6a8ef0c2d3000e9b0bcc25777d29d526350/mdtraj-1.5.1-cp34-cp34m-macosx_10_5_x86_64.whl#sha256=9554b9bcb0729d9dbc10b9ccc74506544a2c2e37d4a478f83fd8d1cba081b2d7 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,886   Skipping link: none of the wheel's tags (cp35-cp35m-macosx_10_5_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/2b/6e/a791501a9a60b3cb2063fc3db8d4d9b1a27cfa4432261b98f804f9bf34e1/mdtraj-1.5.1-cp35-cp35m-macosx_10_5_x86_64.whl#sha256=a8e1eafa532abd1165e5e15636faf0c0858ab03239dbf8264ad23ac1bd820f13 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,887   Found link https://files.pythonhosted.org/packages/dc/6c/2173608f090cf361b8c858e7db974757a8ec9c639ce69b100e9a4608875e/mdtraj-1.5.1.tar.gz#sha256=15d57e229e5be9ba2b4a78d004bf57ae63ba5e86079b47643654751faf41e014 (from https://pypi.org/simple/mdtraj/), version: 1.5.1
2021-07-10T05:37:43,887   Found link https://files.pythonhosted.org/packages/78/ae/82df7eca71fa9e71ad4638f8c222164ccc3583874cb4a6875a04586312bc/mdtraj-1.5.1.zip#sha256=d97591eebf1e9ae04c2b2e144340a959ed359fe33037c647b174f017bab482c3 (from https://pypi.org/simple/mdtraj/), version: 1.5.1
2021-07-10T05:37:43,887   Found link https://files.pythonhosted.org/packages/40/21/40aeb64c81f480e07b1e1c31c6b3b332bc38df08d5fd30210fc235acdb3d/mdtraj-1.6.0.tar.gz#sha256=6da885f0f3bad7baa27adf6f7cac62282e02e58b319144f1fefeaa6d3ca8fe7a (from https://pypi.org/simple/mdtraj/), version: 1.6.0
2021-07-10T05:37:43,888   Found link https://files.pythonhosted.org/packages/8f/9e/cf5814ce6a29a474dc2b61492ed36dde1397b1707e63248bafe495529c29/mdtraj-1.6.0.zip#sha256=9d281e43cbc7133615dc0b81e63f64e79e39e3d25098103798301f3c06383c0b (from https://pypi.org/simple/mdtraj/), version: 1.6.0
2021-07-10T05:37:43,888   Found link https://files.pythonhosted.org/packages/a7/09/abb145901e09665d3a7931527e34a160049cebf4eba3506a69db2093f5f9/mdtraj-1.6.1.tar.gz#sha256=1d390acb7bbe09c7a2b1c639c641c47eef09c37bd525cd83c201addda37074c8 (from https://pypi.org/simple/mdtraj/), version: 1.6.1
2021-07-10T05:37:43,888   Found link https://files.pythonhosted.org/packages/38/44/179f101e32ab7ceb52864fb4ef2955c0807b9f548c087f39f2cfd18cb498/mdtraj-1.6.1.zip#sha256=bca98c6339d04b36934b37857eae9f42fb667e1745d4d7dc29ebfd4e3c653365 (from https://pypi.org/simple/mdtraj/), version: 1.6.1
2021-07-10T05:37:43,888   Found link https://files.pythonhosted.org/packages/bf/81/6f611041374bd7d2d49a15040d999cc52eed1a44e856a4a8d9c02370ac37/mdtraj-1.7.2.tar.gz#sha256=1bc9fb06e84f6562e51e040946dae0b940eaca4760f78f3ac451f4a89b132a9a (from https://pypi.org/simple/mdtraj/), version: 1.7.2
2021-07-10T05:37:43,889   Found link https://files.pythonhosted.org/packages/ff/b2/8785a8c9c7119e1a7c4e64072ccf428f75a3b0a9782a7ac25e5402b0a59d/mdtraj-1.7.2.zip#sha256=3158176cd2c21d2abdff5b2cbd9cac323f337b831123d5201bbb7d3fbe69e714 (from https://pypi.org/simple/mdtraj/), version: 1.7.2
2021-07-10T05:37:43,889   Found link https://files.pythonhosted.org/packages/cd/9f/027fa58d4e93dd3d700e22d5766961c970f6882c2bffd33daef55219d078/mdtraj-1.8.0.tar.gz#sha256=480fa4c280146e91db0ab7811f6fba5da29e89452b071d366a8e68247a88ffea (from https://pypi.org/simple/mdtraj/), version: 1.8.0
2021-07-10T05:37:43,889   Found link https://files.pythonhosted.org/packages/4a/2e/5bb01aaa8cd2ea9d75dd2ac12fd9f04f7137a8c996bde0138ad1b5e54ecb/mdtraj-1.8.0.zip#sha256=867325cb206dca4a605de4877e17e5e1983f2e778a6ef64594bd4250142561a8 (from https://pypi.org/simple/mdtraj/), version: 1.8.0
2021-07-10T05:37:43,890   Found link https://files.pythonhosted.org/packages/af/93/8ad08f58668db6e3bf85e402c9c753fa4425c249de276b55f20c08e3fff7/mdtraj-1.9.1.tar.gz#sha256=ca1ae07c5f5ce59940a48388ac9b098f8e22743b5f3ed3f46d5e3d1317b06282 (from https://pypi.org/simple/mdtraj/), version: 1.9.1
2021-07-10T05:37:43,890   Found link https://files.pythonhosted.org/packages/e0/9e/857f613eae8af3fb8cc73904b3edf622c58de3884c5989e4466973c3c9ee/mdtraj-1.9.2.tar.gz#sha256=cdd926f19c007955f0f768d36d696f3e77b4c8030289a2b40eb97a91cebacd0f (from https://pypi.org/simple/mdtraj/), version: 1.9.2
2021-07-10T05:37:43,890   Found link https://files.pythonhosted.org/packages/72/68/1efc74927df6fdaaa4816556a2534f4560cb69ed573ccac728e4fb8e3e09/mdtraj-1.9.3.tar.gz#sha256=5d95e045b1dd093a26bf6fea9895c3c6b52955d8f7fceee867a519ccf29640b3 (from https://pypi.org/simple/mdtraj/), version: 1.9.3
2021-07-10T05:37:43,890   Found link https://files.pythonhosted.org/packages/50/1d/581a080a1900f61bb1c0388e29517a54d4034faa094d40d794e1f96597d9/mdtraj-1.9.4.tar.gz#sha256=d5d28be24dd5f38e8b272c3a445a6cdbffc374b30e891c5535f65bb20f7e8b24 (from https://pypi.org/simple/mdtraj/), version: 1.9.4
2021-07-10T05:37:43,891   Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/1b/77/3ac1597812fc28964662587d405f85986206192623b434f7d0fa1b4a6a5b/mdtraj-1.9.5-cp36-cp36m-manylinux1_x86_64.whl#sha256=c02a9a589acc98dd3cc4db9b0cb21725f5e2cb9484c14cc4fa032a4663c7a1e9 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,891   Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/af/da/271e93bb98bc93ccac17bc1f31f814be4f9e7024ac19bf31af892a462030/mdtraj-1.9.5-cp37-cp37m-manylinux1_x86_64.whl#sha256=8816f9a91826e46a413fd1a5ffd663b4076cf4c3b8930bb2046814d1438a88ee (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,892   Skipping link: none of the wheel's tags (cp38-cp38-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/3b/fd/4ffba665d0b0346072f61d0e8ef7ab281202db445d99136c717c89169a97/mdtraj-1.9.5-cp38-cp38-manylinux1_x86_64.whl#sha256=84bb3ced0ff61c4b3b38a36d71837599f50c8723c5d9e555dced51d0d09e10a1 (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,892   Skipping link: none of the wheel's tags (cp39-cp39-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/68/53/2f666107565f4735abd859b6af6867353eb08d0e9728d90fb0abc12d578e/mdtraj-1.9.5-cp39-cp39-manylinux1_x86_64.whl#sha256=7eae1adc6aa876396c9797d80db3f71da831601fb1739da731e1de9ca8ac96ab (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,893   Found link https://files.pythonhosted.org/packages/d8/cb/5dcc31c7e2c4485bd2aea66233def28954f2dc530607f5c43fefab71a963/mdtraj-1.9.5.tar.gz#sha256=f22c28c9dd51aa0f8692078dd3c2c7a338a7ca27cbd9aaeb669a60361e95adc4 (from https://pypi.org/simple/mdtraj/), version: 1.9.5
2021-07-10T05:37:43,893   Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64, cp36-cp36m-manylinux_2_5_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fe/a7/2a1392fe56ddd22a9cf5dcff7d684bdd7ce146d5c32839080dd8de7122dd/mdtraj-1.9.6-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=8d437742ec45ff619c7a50afacf16f3a791d604cd0be74b5b74d90b0dc3f577a (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,894   Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64, cp37-cp37m-manylinux_2_5_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ce/ee/2015ff88cacb7c75b5e1cf6a57e8a089549b0e76bcd9474a08845f7ef12f/mdtraj-1.9.6-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=49f4251f83a7fdea4a8122369ef47f213bb1c1cfc38b91177e98985484fb63bf (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,894   Skipping link: none of the wheel's tags (cp38-cp38-manylinux1_x86_64, cp38-cp38-manylinux_2_5_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c0/61/2fb002b9b2ab90567eb1a837ed510152ddadd5b8358ac800b591e37675e0/mdtraj-1.9.6-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=84bf863729d435df0dd1f86c3023cbe85b8940b102f9d6ef6ce00dcb9130883c (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,894   Skipping link: none of the wheel's tags (cp39-cp39-manylinux1_x86_64, cp39-cp39-manylinux_2_5_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/09/49/85dc22a3c28108dfd0bce8a4268ae3937167b18fac531a0d801505cad7d9/mdtraj-1.9.6-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl#sha256=44fcc435df4057126c123585e36a8a4563e24588ad438c916751e2e01501e2ff (from https://pypi.org/simple/mdtraj/)
2021-07-10T05:37:43,895   Found link https://files.pythonhosted.org/packages/12/72/af80a9be1a0b8086cff7572c72b7a06e917cc128719a70b087e77e23736c/mdtraj-1.9.6.tar.gz#sha256=5b7c9b98dd0a1c1a2ddd6c1690fba6096a63314da2e79e05a8a1402b8949ad3c (from https://pypi.org/simple/mdtraj/), version: 1.9.6
2021-07-10T05:37:43,895 Skipping link: not a file: https://pypi.org/simple/mdtraj/
2021-07-10T05:37:43,903 Given no hashes to check 2 links for project 'mdtraj': discarding no candidates
2021-07-10T05:37:43,923 Collecting mdtraj==1.4.1
2021-07-10T05:37:43,924   Created temporary directory: /tmp/pip-unpack-5xp9ga40
2021-07-10T05:37:45,978   Downloading mdtraj-1.4.1.zip (14.8 MB)
2021-07-10T05:37:49,567   Added mdtraj==1.4.1 from https://files.pythonhosted.org/packages/eb/b4/4fd2c5d63e4a1f10047df8a3f83071d41ba9203abf1a86d381f2c16cef94/mdtraj-1.4.1.zip#sha256=b58cb4ff9cc191871b06d71768128584753a8136d09cd8ff5445da333bc283c9 to build tracker '/tmp/pip-req-tracker-xjp_ssnk'
2021-07-10T05:37:49,568     Running setup.py (path:/tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/setup.py) egg_info for package mdtraj
2021-07-10T05:37:49,569     Created temporary directory: /tmp/pip-pip-egg-info-nl7btxd2
2021-07-10T05:37:49,569     Running command python setup.py egg_info
2021-07-10T05:37:50,761     Using built-in specs.
2021-07-10T05:37:50,762     COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc
2021-07-10T05:37:50,762     COLLECT_LTO_WRAPPER=/usr/lib/gcc/arm-linux-gnueabihf/10/lto-wrapper
2021-07-10T05:37:50,762     Target: arm-linux-gnueabihf
2021-07-10T05:37:50,763     Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf
2021-07-10T05:37:50,763     Thread model: posix
2021-07-10T05:37:50,763     Supported LTO compression algorithms: zlib zstd
2021-07-10T05:37:50,763     gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1)
2021-07-10T05:37:52,622     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/mdtraj/formats/binpos/binpos.pyx
2021-07-10T05:37:52,623       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T05:37:54,719     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/mdtraj/formats/dcd/dcd.pyx
2021-07-10T05:37:54,719       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T05:37:57,025     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/mdtraj/formats/xtc/trr.pyx
2021-07-10T05:37:57,026       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T05:37:59,505     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/mdtraj/geometry/neighbors.pyx
2021-07-10T05:37:59,506       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T05:38:04,880     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/mdtraj/geometry/src/_geometry.pyx
2021-07-10T05:38:04,880       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T05:38:10,466     C compiler:
2021-07-10T05:38:10,466     Attempting to autodetect OpenMP support... Compiler supports OpenMP
2021-07-10T05:38:10,466     Attempting to autodetect SSE3   support... Did not detect SSE3 support
2021-07-10T05:38:10,467     Attempting to autodetect SSE4.1 support... Did not detect SSE4.1 support

2021-07-10T05:38:10,467     Compiling mdtraj/formats/xtc/trr.pyx because it changed.
2021-07-10T05:38:10,467     Compiling mdtraj/formats/dcd/dcd.pyx because it changed.
2021-07-10T05:38:10,467     Compiling mdtraj/formats/binpos/binpos.pyx because it changed.
2021-07-10T05:38:10,467     Compiling mdtraj/geometry/src/_geometry.pyx because it changed.
2021-07-10T05:38:10,468     Compiling mdtraj/geometry/neighbors.pyx because it changed.
2021-07-10T05:38:10,468     [1/5] Cythonizing mdtraj/formats/binpos/binpos.pyx
2021-07-10T05:38:10,468     [2/5] Cythonizing mdtraj/formats/dcd/dcd.pyx
2021-07-10T05:38:10,468     [3/5] Cythonizing mdtraj/formats/xtc/trr.pyx
2021-07-10T05:38:10,468     [4/5] Cythonizing mdtraj/geometry/neighbors.pyx
2021-07-10T05:38:10,468     [5/5] Cythonizing mdtraj/geometry/src/_geometry.pyx
2021-07-10T05:38:10,610     running egg_info
2021-07-10T05:38:10,612     creating /tmp/pip-pip-egg-info-nl7btxd2/mdtraj.egg-info
2021-07-10T05:38:10,613     writing /tmp/pip-pip-egg-info-nl7btxd2/mdtraj.egg-info/PKG-INFO
2021-07-10T05:38:10,616     writing dependency_links to /tmp/pip-pip-egg-info-nl7btxd2/mdtraj.egg-info/dependency_links.txt
2021-07-10T05:38:10,618     writing entry points to /tmp/pip-pip-egg-info-nl7btxd2/mdtraj.egg-info/entry_points.txt
2021-07-10T05:38:10,620     writing top-level names to /tmp/pip-pip-egg-info-nl7btxd2/mdtraj.egg-info/top_level.txt
2021-07-10T05:38:10,622     writing manifest file '/tmp/pip-pip-egg-info-nl7btxd2/mdtraj.egg-info/SOURCES.txt'
2021-07-10T05:38:10,864     reading manifest file '/tmp/pip-pip-egg-info-nl7btxd2/mdtraj.egg-info/SOURCES.txt'
2021-07-10T05:38:10,866     reading manifest template 'MANIFEST.in'
2021-07-10T05:38:10,930     writing manifest file '/tmp/pip-pip-egg-info-nl7btxd2/mdtraj.egg-info/SOURCES.txt'
2021-07-10T05:38:11,354   Source in /tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46 has version 1.4.1, which satisfies requirement mdtraj==1.4.1 from https://files.pythonhosted.org/packages/eb/b4/4fd2c5d63e4a1f10047df8a3f83071d41ba9203abf1a86d381f2c16cef94/mdtraj-1.4.1.zip#sha256=b58cb4ff9cc191871b06d71768128584753a8136d09cd8ff5445da333bc283c9
2021-07-10T05:38:11,355   Removed mdtraj==1.4.1 from https://files.pythonhosted.org/packages/eb/b4/4fd2c5d63e4a1f10047df8a3f83071d41ba9203abf1a86d381f2c16cef94/mdtraj-1.4.1.zip#sha256=b58cb4ff9cc191871b06d71768128584753a8136d09cd8ff5445da333bc283c9 from build tracker '/tmp/pip-req-tracker-xjp_ssnk'
2021-07-10T05:38:11,359 Created temporary directory: /tmp/pip-unpack-8ivnhsrl
2021-07-10T05:38:11,360 Building wheels for collected packages: mdtraj
2021-07-10T05:38:11,364   Created temporary directory: /tmp/pip-wheel-9_sbdfme
2021-07-10T05:38:11,364   Building wheel for mdtraj (setup.py): started
2021-07-10T05:38:11,364   Destination directory: /tmp/pip-wheel-9_sbdfme
2021-07-10T05:38:11,365   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9_sbdfme
2021-07-10T05:38:12,526   C compiler:
2021-07-10T05:38:12,535   Using built-in specs.
2021-07-10T05:38:12,536   COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc
2021-07-10T05:38:12,536   COLLECT_LTO_WRAPPER=/usr/lib/gcc/arm-linux-gnueabihf/10/lto-wrapper
2021-07-10T05:38:12,536   Target: arm-linux-gnueabihf
2021-07-10T05:38:12,536   Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf
2021-07-10T05:38:12,536   Thread model: posix
2021-07-10T05:38:12,536   Supported LTO compression algorithms: zlib zstd
2021-07-10T05:38:12,537   gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1)
2021-07-10T05:38:13,099   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2021-07-10T05:38:13,282   Attempting to autodetect SSE3   support... Did not detect SSE3 support
2021-07-10T05:38:13,456   Attempting to autodetect SSE4.1 support... Did not detect SSE4.1 support

2021-07-10T05:38:14,300   running bdist_wheel
2021-07-10T05:38:14,304   running build
2021-07-10T05:38:14,305   running build_py
2021-07-10T05:38:14,440   creating build
2021-07-10T05:38:14,440   creating build/lib.linux-armv7l-3.9
2021-07-10T05:38:14,441   creating build/lib.linux-armv7l-3.9/mdtraj
2021-07-10T05:38:14,442   creating build/lib.linux-armv7l-3.9/mdtraj/scripts
2021-07-10T05:38:14,443   copying mdtraj/scripts/mdconvert.py -> build/lib.linux-armv7l-3.9/mdtraj/scripts
2021-07-10T05:38:14,446   copying mdtraj/scripts/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/scripts
2021-07-10T05:38:14,448   copying mdtraj/scripts/mdinspect.py -> build/lib.linux-armv7l-3.9/mdtraj/scripts
2021-07-10T05:38:14,451   copying mdtraj/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj
2021-07-10T05:38:14,453   copying mdtraj/io.py -> build/lib.linux-armv7l-3.9/mdtraj
2021-07-10T05:38:14,455   copying mdtraj/version.py -> build/lib.linux-armv7l-3.9/mdtraj
2021-07-10T05:38:14,458   creating build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,459   copying mdtraj/utils/ffi.py -> build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,461   copying mdtraj/utils/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,463   copying mdtraj/utils/contextmanagers.py -> build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,465   copying mdtraj/utils/test.py -> build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,468   copying mdtraj/utils/unitcell.py -> build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,470   copying mdtraj/utils/rotation.py -> build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,473   copying mdtraj/utils/six.py -> build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,475   copying mdtraj/utils/validation.py -> build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,478   copying mdtraj/utils/delay_import.py -> build/lib.linux-armv7l-3.9/mdtraj/utils
2021-07-10T05:38:14,481   creating build/lib.linux-armv7l-3.9/mdtraj/utils/external
2021-07-10T05:38:14,482   copying mdtraj/utils/external/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/external
2021-07-10T05:38:14,483   copying mdtraj/utils/external/pyparsing.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/external
2021-07-10T05:38:14,491   creating build/lib.linux-armv7l-3.9/mdtraj/utils/external/astor
2021-07-10T05:38:14,492   copying mdtraj/utils/external/astor/misc.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/external/astor
2021-07-10T05:38:14,494   copying mdtraj/utils/external/astor/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/external/astor
2021-07-10T05:38:14,496   copying mdtraj/utils/external/astor/codegen.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/external/astor
2021-07-10T05:38:14,499   copying mdtraj/utils/external/astor/treewalk.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/external/astor
2021-07-10T05:38:14,502   creating build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,503   copying mdtraj/utils/unit/unit.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,506   copying mdtraj/utils/unit/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,509   copying mdtraj/utils/unit/basedimension.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,511   copying mdtraj/utils/unit/mymatrix.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,513   copying mdtraj/utils/unit/unit_math.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,516   copying mdtraj/utils/unit/unit_definitions.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,518   copying mdtraj/utils/unit/quantity.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,521   copying mdtraj/utils/unit/baseunit.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,524   copying mdtraj/utils/unit/doctests.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,527   copying mdtraj/utils/unit/prefix.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,530   copying mdtraj/utils/unit/standard_dimensions.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,532   copying mdtraj/utils/unit/unit_operators.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,534   copying mdtraj/utils/unit/constants.py -> build/lib.linux-armv7l-3.9/mdtraj/utils/unit
2021-07-10T05:38:14,537   creating build/lib.linux-armv7l-3.9/mdtraj/testing
2021-07-10T05:38:14,538   copying mdtraj/testing/testing.py -> build/lib.linux-armv7l-3.9/mdtraj/testing
2021-07-10T05:38:14,541   copying mdtraj/testing/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/testing
2021-07-10T05:38:14,543   copying mdtraj/testing/docstrings.py -> build/lib.linux-armv7l-3.9/mdtraj/testing
2021-07-10T05:38:14,545   copying mdtraj/testing/docscrape.py -> build/lib.linux-armv7l-3.9/mdtraj/testing
2021-07-10T05:38:14,549   copying mdtraj/testing/nosetester.py -> build/lib.linux-armv7l-3.9/mdtraj/testing
2021-07-10T05:38:14,552   creating build/lib.linux-armv7l-3.9/mdtraj/reporters
2021-07-10T05:38:14,552   copying mdtraj/reporters/netcdfreporter.py -> build/lib.linux-armv7l-3.9/mdtraj/reporters
2021-07-10T05:38:14,555   copying mdtraj/reporters/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/reporters
2021-07-10T05:38:14,556   copying mdtraj/reporters/dcdreporter.py -> build/lib.linux-armv7l-3.9/mdtraj/reporters
2021-07-10T05:38:14,558   copying mdtraj/reporters/basereporter.py -> build/lib.linux-armv7l-3.9/mdtraj/reporters
2021-07-10T05:38:14,561   copying mdtraj/reporters/hdf5reporter.py -> build/lib.linux-armv7l-3.9/mdtraj/reporters
2021-07-10T05:38:14,566   creating build/lib.linux-armv7l-3.9/mdtraj/nmr
2021-07-10T05:38:14,566   copying mdtraj/nmr/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/nmr
2021-07-10T05:38:14,568   copying mdtraj/nmr/shift_wrappers.py -> build/lib.linux-armv7l-3.9/mdtraj/nmr
2021-07-10T05:38:14,571   copying mdtraj/nmr/scalar_couplings.py -> build/lib.linux-armv7l-3.9/mdtraj/nmr
2021-07-10T05:38:14,576   creating build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,577   copying mdtraj/tests/test_xml.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,579   copying mdtraj/tests/test_selection.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,582   copying mdtraj/tests/test_trr.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,585   copying mdtraj/tests/test_crd.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,587   copying mdtraj/tests/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,589   copying mdtraj/tests/test_prmtop.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,591   copying mdtraj/tests/test_dcd.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,594   copying mdtraj/tests/test_psf.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,596   copying mdtraj/tests/test_lh5.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,598   copying mdtraj/tests/test_netcdf.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,601   copying mdtraj/tests/test_capi.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,603   copying mdtraj/tests/test_rmsd.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,605   copying mdtraj/tests/test_trajectory.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,608   copying mdtraj/tests/test_io.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,610   copying mdtraj/tests/test_lammpstrj.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,612   copying mdtraj/tests/test_xyz.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,614   copying mdtraj/tests/test_mdconvert.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,617   copying mdtraj/tests/test_hoomdxml.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,619   copying mdtraj/tests/test_reporter.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,621   copying mdtraj/tests/test_mol2.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,623   copying mdtraj/tests/test_element.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,625   copying mdtraj/tests/test_gro.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,627   copying mdtraj/tests/test_nmr.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,629   copying mdtraj/tests/test_topology.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,631   copying mdtraj/tests/test_lprmsd.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,634   copying mdtraj/tests/test_arc.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,636   copying mdtraj/tests/test_restart.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,638   copying mdtraj/tests/test_quaternion.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,640   copying mdtraj/tests/test_mdcrd.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,642   copying mdtraj/tests/test_xtc.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,645   copying mdtraj/tests/test_rmsd_memmap.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,647   copying mdtraj/tests/test_dtr.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,650   copying mdtraj/tests/test_binpos.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,653   copying mdtraj/tests/test_hdf5.py -> build/lib.linux-armv7l-3.9/mdtraj/tests
2021-07-10T05:38:14,656   creating build/lib.linux-armv7l-3.9/mdtraj/core
2021-07-10T05:38:14,657   copying mdtraj/core/trajectory.py -> build/lib.linux-armv7l-3.9/mdtraj/core
2021-07-10T05:38:14,661   copying mdtraj/core/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/core
2021-07-10T05:38:14,663   copying mdtraj/core/element.py -> build/lib.linux-armv7l-3.9/mdtraj/core
2021-07-10T05:38:14,666   copying mdtraj/core/topology.py -> build/lib.linux-armv7l-3.9/mdtraj/core
2021-07-10T05:38:14,670   copying mdtraj/core/residue_names.py -> build/lib.linux-armv7l-3.9/mdtraj/core
2021-07-10T05:38:14,673   copying mdtraj/core/selection.py -> build/lib.linux-armv7l-3.9/mdtraj/core
2021-07-10T05:38:14,678   creating build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,679   copying mdtraj/geometry/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,682   copying mdtraj/geometry/thermodynamic_properties.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,685   copying mdtraj/geometry/dssp.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,687   copying mdtraj/geometry/hbond.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,691   copying mdtraj/geometry/rdf.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,694   copying mdtraj/geometry/dihedral.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,698   copying mdtraj/geometry/alignment.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,702   copying mdtraj/geometry/order.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,705   copying mdtraj/geometry/contact.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,708   copying mdtraj/geometry/angle.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,712   copying mdtraj/geometry/sasa.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,716   copying mdtraj/geometry/internal.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,722   copying mdtraj/geometry/rg.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,725   copying mdtraj/geometry/distance.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry
2021-07-10T05:38:14,730   creating build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,730   copying mdtraj/geometry/tests/test_distance.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,733   copying mdtraj/geometry/tests/test_contact.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,735   copying mdtraj/geometry/tests/test_dssp.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,737   copying mdtraj/geometry/tests/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,738   copying mdtraj/geometry/tests/test_drid.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,741   copying mdtraj/geometry/tests/test_alignment.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,743   copying mdtraj/geometry/tests/test_geometry.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,745   copying mdtraj/geometry/tests/test_sasa.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,748   copying mdtraj/geometry/tests/test_hbonds.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,750   copying mdtraj/geometry/tests/test_angles.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,753   copying mdtraj/geometry/tests/test_neighbors.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,755   copying mdtraj/geometry/tests/test_thermodynamic_properties.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,757   copying mdtraj/geometry/tests/test_dihedral.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,760   copying mdtraj/geometry/tests/test_order.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,762   copying mdtraj/geometry/tests/test_rdf.py -> build/lib.linux-armv7l-3.9/mdtraj/geometry/tests
2021-07-10T05:38:14,765   creating build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,766   copying mdtraj/formats/netcdf.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,770   copying mdtraj/formats/gro.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,775   copying mdtraj/formats/hoomdxml.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,779   copying mdtraj/formats/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,782   copying mdtraj/formats/mol2.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,784   copying mdtraj/formats/hdf5.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,790   copying mdtraj/formats/arc.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,794   copying mdtraj/formats/mdcrd.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,799   copying mdtraj/formats/openmmxml.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,802   copying mdtraj/formats/xyzfile.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,806   copying mdtraj/formats/psf.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,811   copying mdtraj/formats/lammpstrj.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,816   copying mdtraj/formats/lh5.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,822   copying mdtraj/formats/prmtop.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,827   copying mdtraj/formats/registry.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,830   copying mdtraj/formats/amberrst.py -> build/lib.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:14,837   creating build/lib.linux-armv7l-3.9/mdtraj/formats/pdb
2021-07-10T05:38:14,839   copying mdtraj/formats/pdb/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/formats/pdb
2021-07-10T05:38:14,843   copying mdtraj/formats/pdb/pdbfile.py -> build/lib.linux-armv7l-3.9/mdtraj/formats/pdb
2021-07-10T05:38:14,847   copying mdtraj/formats/pdb/pdbstructure.py -> build/lib.linux-armv7l-3.9/mdtraj/formats/pdb
2021-07-10T05:38:14,852   creating build/lib.linux-armv7l-3.9/mdtraj/formats/pdb/tests
2021-07-10T05:38:14,853   copying mdtraj/formats/pdb/tests/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/formats/pdb/tests
2021-07-10T05:38:14,855   copying mdtraj/formats/pdb/tests/test_pdb.py -> build/lib.linux-armv7l-3.9/mdtraj/formats/pdb/tests
2021-07-10T05:38:14,858   copying mdtraj/formats/pdb/tests/test_element.py -> build/lib.linux-armv7l-3.9/mdtraj/formats/pdb/tests
2021-07-10T05:38:14,861   creating build/lib.linux-armv7l-3.9/mdtraj/html
2021-07-10T05:38:14,861   copying mdtraj/html/imagebutton_widget.py -> build/lib.linux-armv7l-3.9/mdtraj/html
2021-07-10T05:38:14,864   copying mdtraj/html/__init__.py -> build/lib.linux-armv7l-3.9/mdtraj/html
2021-07-10T05:38:14,866   copying mdtraj/html/linked_heatmap.py -> build/lib.linux-armv7l-3.9/mdtraj/html
2021-07-10T05:38:14,868   copying mdtraj/html/install.py -> build/lib.linux-armv7l-3.9/mdtraj/html
2021-07-10T05:38:14,870   copying mdtraj/html/trajectory_widget.py -> build/lib.linux-armv7l-3.9/mdtraj/html
2021-07-10T05:38:14,891   creating build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,892   copying mdtraj/testing/reference/bpti.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,897   copying mdtraj/testing/reference/alanine-dipeptide-implicit.prmtop -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,900   copying mdtraj/testing/reference/native.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,902   copying mdtraj/testing/reference/3lines.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,904   copying mdtraj/testing/reference/ala_ala_ala.mdcrd -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,906   copying mdtraj/testing/reference/tip3p_300K_1ATM_O-O_rdf.xvg -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,909   copying mdtraj/testing/reference/inpcrd -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,915   copying mdtraj/testing/reference/1ncw.pdb.gz -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,922   copying mdtraj/testing/reference/lysozyme-ligand-tripos.mol2 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,924   copying mdtraj/testing/reference/frame0.lammpstrj -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,934   copying mdtraj/testing/reference/mdcrd.nc -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,943   copying mdtraj/testing/reference/4OH9.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,948   copying mdtraj/testing/reference/1am7_corrected.xtc -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,964   copying mdtraj/testing/reference/1am7_protein.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,973   copying mdtraj/testing/reference/2lines.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:14,976   copying mdtraj/testing/reference/test_hoomdxml.dcd -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,012   copying mdtraj/testing/reference/1vii.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,016   copying mdtraj/testing/reference/contacts.dat -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,018   copying mdtraj/testing/reference/tip3p_300K_1ATM.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,023   copying mdtraj/testing/reference/cc_closest-heavy.dat -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,026   copying mdtraj/testing/reference/1vii.pdb.gz -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,029   copying mdtraj/testing/reference/monolayer.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,041   copying mdtraj/testing/reference/3pqr_memb.psf -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,565   copying mdtraj/testing/reference/cc_ca.dat -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,567   copying mdtraj/testing/reference/ala_ala_ala.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,570   copying mdtraj/testing/reference/freesolve_v0.3.tar.bz2 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,581   copying mdtraj/testing/reference/ala3_chamber.parm7 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,584   copying mdtraj/testing/reference/nitrogen.arc -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,602   copying mdtraj/testing/reference/3nch.pdb.gz -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,614   copying mdtraj/testing/reference/overflow.crd -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,645   copying mdtraj/testing/reference/frame0.xtc.h5 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,651   copying mdtraj/testing/reference/imatinib.mol2 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,654   copying mdtraj/testing/reference/custom.lammpstrj -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,656   copying mdtraj/testing/reference/tip3p_300K_1ATM.xtc -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,692   copying mdtraj/testing/reference/2EQQ.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,717   copying mdtraj/testing/reference/4waters.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,719   copying mdtraj/testing/reference/1line.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,721   copying mdtraj/testing/reference/cc_closest.dat -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,723   copying mdtraj/testing/reference/multiframe.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,725   copying mdtraj/testing/reference/monolayer.xtc -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,759   copying mdtraj/testing/reference/4waters.arc -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,761   copying mdtraj/testing/reference/frame0.h5 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,765   copying mdtraj/testing/reference/frame0.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,785   copying mdtraj/testing/reference/alanine-dipeptide-explicit.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,792   copying mdtraj/testing/reference/tz2.truncoct.parm7 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,819   copying mdtraj/testing/reference/frame0.mdcrd -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,834   copying mdtraj/testing/reference/tip3p_300K_1ATM_all-all_rdf.xvg -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,837   copying mdtraj/testing/reference/tip3p_300K_1ATM_O-H_rdf.xvg -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,839   copying mdtraj/testing/reference/frame0.trr -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,852   copying mdtraj/testing/reference/frame0.nc -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,858   copying mdtraj/testing/reference/water_hex.pdb.gz -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,903   copying mdtraj/testing/reference/traj.h5 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,907   copying mdtraj/testing/reference/native2.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,909   copying mdtraj/testing/reference/alanine-dipeptide-explicit.binpos -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,912   copying mdtraj/testing/reference/native2.xml -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,915   copying mdtraj/testing/reference/frame0.dcd -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,922   copying mdtraj/testing/reference/ala_ala_ala.psf -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,925   copying mdtraj/testing/reference/frame0.gro -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,957   copying mdtraj/testing/reference/ala_dipeptide.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,964   copying mdtraj/testing/reference/atom_pairs.dat -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,966   copying mdtraj/testing/reference/custom.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,969   copying mdtraj/testing/reference/README.md -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:15,978   copying mdtraj/testing/reference/frame0.mdcrdbox -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,010   copying mdtraj/testing/reference/alanine.binpos -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,017   copying mdtraj/testing/reference/1am7_uncorrected.xtc -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,035   copying mdtraj/testing/reference/ala_dipeptide.dcd -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,040   copying mdtraj/testing/reference/frame0.xyz -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,058   copying mdtraj/testing/reference/frame0.xyz.gz -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,064   copying mdtraj/testing/reference/4K6Q.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,072   copying mdtraj/testing/reference/status-bits.mol2 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,075   copying mdtraj/testing/reference/g_sas_ref.dat -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,086   copying mdtraj/testing/reference/legacy_msmbuilder_trj0.lh5 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,091   copying mdtraj/testing/reference/nonconsecutive_resSeq.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,094   copying mdtraj/testing/reference/ala_ala_ala.xpsf -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,098   copying mdtraj/testing/reference/1bpi.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,103   copying mdtraj/testing/reference/ncinpcrd.rst7 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,110   copying mdtraj/testing/reference/frame0.binpos -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,116   copying mdtraj/testing/reference/nitrogen.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,147   copying mdtraj/testing/reference/alanine-dipeptide-explicit.prmtop -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,159   copying mdtraj/testing/reference/1vii_sustiva_water.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,203   copying mdtraj/testing/reference/frame0.xtc -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,208   copying mdtraj/testing/reference/frame0.binpos.h5 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,212   copying mdtraj/testing/reference/md.mdp -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,215   copying mdtraj/testing/reference/Rg_traj_ref.dat -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,217   copying mdtraj/testing/reference/frame0.dcd.h5 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,222   copying mdtraj/testing/reference/atom_distances_traj_ref.dat -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,225   copying mdtraj/testing/reference/GG-tip4pew.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,234   copying mdtraj/testing/reference/imatinib.pdb -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,237   copying mdtraj/testing/reference/well-mixed.hoomdxml -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference
2021-07-10T05:38:16,253   creating build/lib.linux-armv7l-3.9/mdtraj/testing/reference/ala_dipeptide_trj
2021-07-10T05:38:16,254   copying mdtraj/testing/reference/ala_dipeptide_trj/clickme.dtr -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/ala_dipeptide_trj
2021-07-10T05:38:16,257   copying mdtraj/testing/reference/ala_dipeptide_trj/frame000000000 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/ala_dipeptide_trj
2021-07-10T05:38:16,261   copying mdtraj/testing/reference/ala_dipeptide_trj/timekeys -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/ala_dipeptide_trj
2021-07-10T05:38:16,263   copying mdtraj/testing/reference/ala_dipeptide_trj/metadata -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/ala_dipeptide_trj
2021-07-10T05:38:16,265   copying mdtraj/testing/reference/ala_dipeptide_trj/frame000000001 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/ala_dipeptide_trj
2021-07-10T05:38:16,269   copying mdtraj/testing/reference/ala_dipeptide_trj/frame000000002 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/ala_dipeptide_trj
2021-07-10T05:38:16,273   creating build/lib.linux-armv7l-3.9/mdtraj/testing/reference/frame0.dtr
2021-07-10T05:38:16,274   copying mdtraj/testing/reference/frame0.dtr/clickme.dtr -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/frame0.dtr
2021-07-10T05:38:16,277   copying mdtraj/testing/reference/frame0.dtr/frame000000000 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/frame0.dtr
2021-07-10T05:38:16,307   copying mdtraj/testing/reference/frame0.dtr/timekeys -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/frame0.dtr
2021-07-10T05:38:16,310   copying mdtraj/testing/reference/frame0.dtr/metadata -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/frame0.dtr
2021-07-10T05:38:16,312   copying mdtraj/testing/reference/frame0.dtr/frame000000001 -> build/lib.linux-armv7l-3.9/mdtraj/testing/reference/frame0.dtr
2021-07-10T05:38:16,339   creating build/lib.linux-armv7l-3.9/mdtraj/formats/pdb/data
2021-07-10T05:38:16,339   copying mdtraj/formats/pdb/data/pdbNames.xml -> build/lib.linux-armv7l-3.9/mdtraj/formats/pdb/data
2021-07-10T05:38:16,342   copying mdtraj/formats/pdb/data/residues.xml -> build/lib.linux-armv7l-3.9/mdtraj/formats/pdb/data
2021-07-10T05:38:16,346   creating build/lib.linux-armv7l-3.9/mdtraj/html/static
2021-07-10T05:38:16,347   copying mdtraj/html/static/context.js -> build/lib.linux-armv7l-3.9/mdtraj/html/static
2021-07-10T05:38:16,349   copying mdtraj/html/static/surface.min.js -> build/lib.linux-armv7l-3.9/mdtraj/html/static
2021-07-10T05:38:16,354   copying mdtraj/html/static/objexporter.js -> build/lib.linux-armv7l-3.9/mdtraj/html/static
2021-07-10T05:38:16,357   copying mdtraj/html/static/widget_trajectory.js -> build/lib.linux-armv7l-3.9/mdtraj/html/static
2021-07-10T05:38:16,360   copying mdtraj/html/static/widget_imagebutton.js -> build/lib.linux-armv7l-3.9/mdtraj/html/static
2021-07-10T05:38:16,362   copying mdtraj/html/static/iview.js -> build/lib.linux-armv7l-3.9/mdtraj/html/static
2021-07-10T05:38:16,367   copying mdtraj/html/static/filesaver.js -> build/lib.linux-armv7l-3.9/mdtraj/html/static
2021-07-10T05:38:16,390   running build_ext
2021-07-10T05:38:16,393   building 'mdtraj.formats.xtc' extension
2021-07-10T05:38:16,394   creating build/temp.linux-armv7l-3.9
2021-07-10T05:38:16,394   creating build/temp.linux-armv7l-3.9/mdtraj
2021-07-10T05:38:16,395   creating build/temp.linux-armv7l-3.9/mdtraj/formats
2021-07-10T05:38:16,396   creating build/temp.linux-armv7l-3.9/mdtraj/formats/xtc
2021-07-10T05:38:16,396   creating build/temp.linux-armv7l-3.9/mdtraj/formats/xtc/src
2021-07-10T05:38:16,397   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/formats/xtc/src/xdrfile.c -o build/temp.linux-armv7l-3.9/mdtraj/formats/xtc/src/xdrfile.o
2021-07-10T05:38:16,575   mdtraj/formats/xtc/src/xdrfile.c: In function ‘sizeofint’:
2021-07-10T05:38:16,576   mdtraj/formats/xtc/src/xdrfile.c:495:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-10T05:38:16,576     495 |     while (size >= num && num_of_bits < 32)
2021-07-10T05:38:16,576         |                 ^~
2021-07-10T05:38:16,576   mdtraj/formats/xtc/src/xdrfile.c: In function ‘sizeofints’:
2021-07-10T05:38:16,576   mdtraj/formats/xtc/src/xdrfile.c:541:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,576     541 |     while (bytes[num_of_bytes] >= num)
2021-07-10T05:38:16,577         |                                ^~
2021-07-10T05:38:16,577   mdtraj/formats/xtc/src/xdrfile.c: In function ‘encodeints’:
2021-07-10T05:38:16,577   mdtraj/formats/xtc/src/xdrfile.c:650:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-10T05:38:16,578     650 |     if (num_of_bits >= num_of_bytes * 8)
2021-07-10T05:38:16,578         |                     ^~
2021-07-10T05:38:16,578   mdtraj/formats/xtc/src/xdrfile.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-10T05:38:16,578     652 |   for (i = 0; i < num_of_bytes; i++)
2021-07-10T05:38:16,578         |                 ^
2021-07-10T05:38:16,578   mdtraj/formats/xtc/src/xdrfile.c:660:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-10T05:38:16,579     660 |   for (i = 0; i < num_of_bytes-1; i++)
2021-07-10T05:38:16,579         |                 ^
2021-07-10T05:38:16,579   mdtraj/formats/xtc/src/xdrfile.c: In function ‘decodebits’:
2021-07-10T05:38:16,579   mdtraj/formats/xtc/src/xdrfile.c:700:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,579     700 |   if (lastbits < num_of_bits)
2021-07-10T05:38:16,579         |                ^
2021-07-10T05:38:16,581   mdtraj/formats/xtc/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2021-07-10T05:38:16,581   mdtraj/formats/xtc/src/xdrfile.c:815:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,581     815 |  if(size3>xfp->buf1size)
2021-07-10T05:38:16,581         |          ^
2021-07-10T05:38:16,583   mdtraj/formats/xtc/src/xdrfile.c:869:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,583     869 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2021-07-10T05:38:16,583         |                   ^
2021-07-10T05:38:16,583   mdtraj/formats/xtc/src/xdrfile.c:869:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2021-07-10T05:38:16,583     869 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2021-07-10T05:38:16,583         |                                     ^~~
2021-07-10T05:38:16,584   mdtraj/formats/xtc/src/xdrfile.c:928:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-10T05:38:16,585     928 |   if ((lfp-ptrstart)+run > size3)
2021-07-10T05:38:16,585         |                          ^
2021-07-10T05:38:16,586   mdtraj/formats/xtc/src/xdrfile.c:788:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2021-07-10T05:38:16,586     788 |  int smallnum, smaller, larger, i, is_smaller, run;
2021-07-10T05:38:16,586         |                         ^~~~~~
2021-07-10T05:38:16,586   mdtraj/formats/xtc/src/xdrfile.c:785:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2021-07-10T05:38:16,586     785 |  int smallidx, minidx, maxidx;
2021-07-10T05:38:16,587         |                ^~~~~~
2021-07-10T05:38:16,587   mdtraj/formats/xtc/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2021-07-10T05:38:16,587   mdtraj/formats/xtc/src/xdrfile.c:1027:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,587    1027 |  if(size3>xfp->buf1size)
2021-07-10T05:38:16,588         |          ^
2021-07-10T05:38:16,592   mdtraj/formats/xtc/src/xdrfile.c:1150:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-10T05:38:16,592    1150 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2021-07-10T05:38:16,592         |                  ^
2021-07-10T05:38:16,592   mdtraj/formats/xtc/src/xdrfile.c:1156:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,593    1156 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2021-07-10T05:38:16,593         |                   ^
2021-07-10T05:38:16,593   mdtraj/formats/xtc/src/xdrfile.c:1156:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2021-07-10T05:38:16,593    1156 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2021-07-10T05:38:16,593         |                                     ^~~
2021-07-10T05:38:16,596   mdtraj/formats/xtc/src/xdrfile.c:1288:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-10T05:38:16,597    1288 |  if(tmp==(unsigned int)buf2[0])
2021-07-10T05:38:16,597         |        ^~
2021-07-10T05:38:16,597   mdtraj/formats/xtc/src/xdrfile.c:1016:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2021-07-10T05:38:16,597    1016 |  int errval=1;
2021-07-10T05:38:16,597         |      ^~~~~~
2021-07-10T05:38:16,598   mdtraj/formats/xtc/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2021-07-10T05:38:16,598   mdtraj/formats/xtc/src/xdrfile.c:1328:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,599    1328 |  if(size3>xfp->buf1size)
2021-07-10T05:38:16,599         |          ^
2021-07-10T05:38:16,600   mdtraj/formats/xtc/src/xdrfile.c:1383:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,601    1383 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2021-07-10T05:38:16,601         |                   ^
2021-07-10T05:38:16,601   mdtraj/formats/xtc/src/xdrfile.c:1383:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2021-07-10T05:38:16,601    1383 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2021-07-10T05:38:16,601         |                                     ^~~
2021-07-10T05:38:16,604   mdtraj/formats/xtc/src/xdrfile.c:1305:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2021-07-10T05:38:16,604    1305 |  int smallnum, smaller, larger, i, is_smaller, run;
2021-07-10T05:38:16,604         |                         ^~~~~~
2021-07-10T05:38:16,605   mdtraj/formats/xtc/src/xdrfile.c:1302:16: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2021-07-10T05:38:16,605    1302 |  int smallidx, minidx, maxidx;
2021-07-10T05:38:16,605         |                ^~~~~~
2021-07-10T05:38:16,605   mdtraj/formats/xtc/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2021-07-10T05:38:16,606   mdtraj/formats/xtc/src/xdrfile.c:1519:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,606    1519 |  if(size3>xfp->buf1size) {
2021-07-10T05:38:16,606         |          ^
2021-07-10T05:38:16,612   mdtraj/formats/xtc/src/xdrfile.c:1634:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-10T05:38:16,612    1634 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2021-07-10T05:38:16,612         |                  ^
2021-07-10T05:38:16,613   mdtraj/formats/xtc/src/xdrfile.c:1639:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:16,613    1639 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2021-07-10T05:38:16,613         |                   ^
2021-07-10T05:38:16,614   mdtraj/formats/xtc/src/xdrfile.c:1639:37: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2021-07-10T05:38:16,614    1639 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2021-07-10T05:38:16,614         |                                     ^~~
2021-07-10T05:38:16,617   mdtraj/formats/xtc/src/xdrfile.c:1749:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-10T05:38:16,617    1749 |  if(tmp==(unsigned int)buf2[0])
2021-07-10T05:38:16,617         |        ^~
2021-07-10T05:38:16,618   mdtraj/formats/xtc/src/xdrfile.c:1509:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2021-07-10T05:38:16,618    1509 |  int errval=1;
2021-07-10T05:38:16,618         |      ^~~~~~
2021-07-10T05:38:18,757   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/formats/xtc/src/xdrfile_xtc.c -o build/temp.linux-armv7l-3.9/mdtraj/formats/xtc/src/xdrfile_xtc.o
2021-07-10T05:38:18,850   mdtraj/formats/xtc/src/xdrfile_xtc.c: In function ‘xtc_coord’:
2021-07-10T05:38:18,850   mdtraj/formats/xtc/src/xdrfile_xtc.c:66:8: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T05:38:18,850      66 |  int i,j,result;
2021-07-10T05:38:18,850         |        ^
2021-07-10T05:38:18,851   mdtraj/formats/xtc/src/xdrfile_xtc.c:66:6: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T05:38:18,851      66 |  int i,j,result;
2021-07-10T05:38:18,851         |      ^
2021-07-10T05:38:18,851   mdtraj/formats/xtc/src/xdrfile_xtc.c: In function ‘read_xtc_nframes’:
2021-07-10T05:38:18,852   mdtraj/formats/xtc/src/xdrfile_xtc.c:119:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
2021-07-10T05:38:18,852     119 |     if (NULL == xd)
2021-07-10T05:38:18,852         |     ^~
2021-07-10T05:38:18,852   mdtraj/formats/xtc/src/xdrfile_xtc.c:122:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
2021-07-10T05:38:18,853     122 |  do {
2021-07-10T05:38:18,853         |  ^~
2021-07-10T05:38:18,997   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Imdtraj/formats/xtc/include/ -Imdtraj/formats/xtc/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mdtraj/formats/xtc/xtc.c -o build/temp.linux-armv7l-3.9/mdtraj/formats/xtc/xtc.o
2021-07-10T05:38:19,403   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T05:38:19,404                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T05:38:19,404                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T05:38:19,404                    from mdtraj/formats/xtc/xtc.c:239:
2021-07-10T05:38:19,404   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T05:38:19,404      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T05:38:19,405         |  ^~~~~~~
2021-07-10T05:38:19,703   mdtraj/formats/xtc/xtc.c: In function ‘__pyx_pf_3xtc_17XTCTrajectoryFile_26__len__’:
2021-07-10T05:38:19,707   mdtraj/formats/xtc/xtc.c:8554:40: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare]
2021-07-10T05:38:19,707    8554 |   __pyx_t_3 = ((__pyx_v_self->n_frames == -1) != 0);
2021-07-10T05:38:19,707         |                                        ^~
2021-07-10T05:38:19,752   mdtraj/formats/xtc/xtc.c: In function ‘PyInit_xtc’:
2021-07-10T05:38:19,758   mdtraj/formats/xtc/xtc.c:11437:36: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-10T05:38:19,758   11437 |   __pyx_type_3xtc_XTCTrajectoryFile.tp_print = 0;
2021-07-10T05:38:19,758         |                                    ^
2021-07-10T05:38:19,773   mdtraj/formats/xtc/xtc.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-10T05:38:19,779   mdtraj/formats/xtc/xtc.c:11926:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,779   11926 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,779         |                     ^
2021-07-10T05:38:19,779   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,780                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,780                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,780   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-10T05:38:19,780     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-10T05:38:19,780         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,787   mdtraj/formats/xtc/xtc.c:11926:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,787   11926 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,787         |                     ^
2021-07-10T05:38:19,787   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,788                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,788                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,788   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-10T05:38:19,788     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-10T05:38:19,788         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,795   mdtraj/formats/xtc/xtc.c:11926:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,795   11926 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,795         |                     ^
2021-07-10T05:38:19,795   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,795                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,796                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,796   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-10T05:38:19,796     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-10T05:38:19,796         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,802   mdtraj/formats/xtc/xtc.c:11926:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,803   11926 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,803         |                     ^
2021-07-10T05:38:19,803   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,803                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,803                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,803   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-10T05:38:19,803     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-10T05:38:19,804         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,810   mdtraj/formats/xtc/xtc.c:11926:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,810   11926 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,810         |                     ^
2021-07-10T05:38:19,811   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,811                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,811                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,811   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-10T05:38:19,811     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-10T05:38:19,811         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,818   mdtraj/formats/xtc/xtc.c:11926:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,818   11926 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,818         |                     ^
2021-07-10T05:38:19,818   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,818                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,818                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,819   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-10T05:38:19,819     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-10T05:38:19,819         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,827   mdtraj/formats/xtc/xtc.c:11942:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,827   11942 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,828         |                         ^
2021-07-10T05:38:19,828   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,828                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,828                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,828   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-10T05:38:19,828     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-10T05:38:19,828         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,835   mdtraj/formats/xtc/xtc.c:11942:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,835   11942 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,835         |                         ^
2021-07-10T05:38:19,835   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,835                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,836                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,836   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-10T05:38:19,836     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-10T05:38:19,836         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,843   mdtraj/formats/xtc/xtc.c:11942:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,843   11942 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,843         |                         ^
2021-07-10T05:38:19,843   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,843                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,843                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,843   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-10T05:38:19,844     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-10T05:38:19,844         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,850   mdtraj/formats/xtc/xtc.c:11942:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,851   11942 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,851         |                         ^
2021-07-10T05:38:19,851   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,851                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,851                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,851   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-10T05:38:19,851     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-10T05:38:19,852         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,858   mdtraj/formats/xtc/xtc.c:11942:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,858   11942 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,858         |                         ^
2021-07-10T05:38:19,859   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,859                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,859                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,859   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-10T05:38:19,859     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-10T05:38:19,859         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,866   mdtraj/formats/xtc/xtc.c:11942:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-10T05:38:19,866   11942 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-10T05:38:19,866         |                         ^
2021-07-10T05:38:19,866   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-10T05:38:19,867                    from /usr/include/python3.9/Python.h:97,
2021-07-10T05:38:19,867                    from mdtraj/formats/xtc/xtc.c:16:
2021-07-10T05:38:19,867   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-10T05:38:19,867     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-10T05:38:19,867         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:19,910   mdtraj/formats/xtc/xtc.c: In function ‘__Pyx_ExceptionSave’:
2021-07-10T05:38:19,922   mdtraj/formats/xtc/xtc.c:12308:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2021-07-10T05:38:19,922   12308 |     *type = tstate->exc_type;
2021-07-10T05:38:19,922         |                     ^~~~~~~~
2021-07-10T05:38:19,922         |                     curexc_type
2021-07-10T05:38:19,933   mdtraj/formats/xtc/xtc.c:12309:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2021-07-10T05:38:19,934   12309 |     *value = tstate->exc_value;
2021-07-10T05:38:19,934         |                      ^~~~~~~~~
2021-07-10T05:38:19,934         |                      curexc_value
2021-07-10T05:38:19,945   mdtraj/formats/xtc/xtc.c:12310:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2021-07-10T05:38:19,945   12310 |     *tb = tstate->exc_traceback;
2021-07-10T05:38:19,945         |                   ^~~~~~~~~~~~~
2021-07-10T05:38:19,946         |                   curexc_traceback
2021-07-10T05:38:19,946   mdtraj/formats/xtc/xtc.c: In function ‘__Pyx_ExceptionReset’:
2021-07-10T05:38:19,957   mdtraj/formats/xtc/xtc.c:12322:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2021-07-10T05:38:19,957   12322 |     tmp_type = tstate->exc_type;
2021-07-10T05:38:19,957         |                        ^~~~~~~~
2021-07-10T05:38:19,957         |                        curexc_type
2021-07-10T05:38:19,968   mdtraj/formats/xtc/xtc.c:12323:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2021-07-10T05:38:19,969   12323 |     tmp_value = tstate->exc_value;
2021-07-10T05:38:19,969         |                         ^~~~~~~~~
2021-07-10T05:38:19,969         |                         curexc_value
2021-07-10T05:38:19,980   mdtraj/formats/xtc/xtc.c:12324:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2021-07-10T05:38:19,980   12324 |     tmp_tb = tstate->exc_traceback;
2021-07-10T05:38:19,980         |                      ^~~~~~~~~~~~~
2021-07-10T05:38:19,980         |                      curexc_traceback
2021-07-10T05:38:19,992   mdtraj/formats/xtc/xtc.c:12325:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2021-07-10T05:38:19,992   12325 |     tstate->exc_type = type;
2021-07-10T05:38:19,992         |             ^~~~~~~~
2021-07-10T05:38:19,992         |             curexc_type
2021-07-10T05:38:20,003   mdtraj/formats/xtc/xtc.c:12326:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2021-07-10T05:38:20,003   12326 |     tstate->exc_value = value;
2021-07-10T05:38:20,004         |             ^~~~~~~~~
2021-07-10T05:38:20,004         |             curexc_value
2021-07-10T05:38:20,015   mdtraj/formats/xtc/xtc.c:12327:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2021-07-10T05:38:20,015   12327 |     tstate->exc_traceback = tb;
2021-07-10T05:38:20,015         |             ^~~~~~~~~~~~~
2021-07-10T05:38:20,015         |             curexc_traceback
2021-07-10T05:38:20,018   mdtraj/formats/xtc/xtc.c: In function ‘__Pyx_GetException’:
2021-07-10T05:38:20,030   mdtraj/formats/xtc/xtc.c:12370:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2021-07-10T05:38:20,030   12370 |     tmp_type = tstate->exc_type;
2021-07-10T05:38:20,030         |                        ^~~~~~~~
2021-07-10T05:38:20,030         |                        curexc_type
2021-07-10T05:38:20,042   mdtraj/formats/xtc/xtc.c:12371:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2021-07-10T05:38:20,042   12371 |     tmp_value = tstate->exc_value;
2021-07-10T05:38:20,042         |                         ^~~~~~~~~
2021-07-10T05:38:20,042         |                         curexc_value
2021-07-10T05:38:20,053   mdtraj/formats/xtc/xtc.c:12372:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2021-07-10T05:38:20,054   12372 |     tmp_tb = tstate->exc_traceback;
2021-07-10T05:38:20,054         |                      ^~~~~~~~~~~~~
2021-07-10T05:38:20,054         |                      curexc_traceback
2021-07-10T05:38:20,065   mdtraj/formats/xtc/xtc.c:12373:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’?
2021-07-10T05:38:20,065   12373 |     tstate->exc_type = local_type;
2021-07-10T05:38:20,066         |             ^~~~~~~~
2021-07-10T05:38:20,066         |             curexc_type
2021-07-10T05:38:20,077   mdtraj/formats/xtc/xtc.c:12374:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’?
2021-07-10T05:38:20,077   12374 |     tstate->exc_value = local_value;
2021-07-10T05:38:20,077         |             ^~~~~~~~~
2021-07-10T05:38:20,077         |             curexc_value
2021-07-10T05:38:20,089   mdtraj/formats/xtc/xtc.c:12375:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’?
2021-07-10T05:38:20,089   12375 |     tstate->exc_traceback = local_tb;
2021-07-10T05:38:20,089         |             ^~~~~~~~~~~~~
2021-07-10T05:38:20,089         |             curexc_traceback
2021-07-10T05:38:20,277   mdtraj/formats/xtc/xtc.c: In function ‘__Pyx_PyObject_AsStringAndSize’:
2021-07-10T05:38:20,284   mdtraj/formats/xtc/xtc.c:14407:20: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-10T05:38:20,284   14407 |             return PyUnicode_AsUTF8(o);
2021-07-10T05:38:20,285         |                    ^~~~~~~~~~~~~~~~~~~
2021-07-10T05:38:20,424   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-10T05:38:20,570   Building wheel for mdtraj (setup.py): finished with status 'error'
2021-07-10T05:38:20,571   ERROR: Failed building wheel for mdtraj
2021-07-10T05:38:20,572   Running setup.py clean for mdtraj
2021-07-10T05:38:20,572   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3hvs1o8j/mdtraj_fdadd02bd5bd45c6b787b27c84e7ea46/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-10T05:38:21,690   C compiler:
2021-07-10T05:38:21,698   Using built-in specs.
2021-07-10T05:38:21,699   COLLECT_GCC=/usr/bin/arm-linux-gnueabihf-gcc
2021-07-10T05:38:21,699   COLLECT_LTO_WRAPPER=/usr/lib/gcc/arm-linux-gnueabihf/10/lto-wrapper
2021-07-10T05:38:21,699   Target: arm-linux-gnueabihf
2021-07-10T05:38:21,699   Configured with: ../src/configure -v --with-pkgversion='Raspbian 10.2.1-6+rpi1' --with-bugurl=file:///usr/share/doc/gcc-10/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-10 --program-prefix=arm-linux-gnueabihf- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-libitm --disable-libquadmath --disable-libquadmath-support --enable-plugin --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-sjlj-exceptions --with-arch=armv6 --with-fpu=vfp --with-float=hard --disable-werror --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf
2021-07-10T05:38:21,699   Thread model: posix
2021-07-10T05:38:21,699   Supported LTO compression algorithms: zlib zstd
2021-07-10T05:38:21,699   gcc version 10.2.1 20210110 (Raspbian 10.2.1-6+rpi1)
2021-07-10T05:38:22,259   Attempting to autodetect OpenMP support... Compiler supports OpenMP
2021-07-10T05:38:22,445   Attempting to autodetect SSE3   support... Did not detect SSE3 support
2021-07-10T05:38:22,620   Attempting to autodetect SSE4.1 support... Did not detect SSE4.1 support

2021-07-10T05:38:23,444   running clean
2021-07-10T05:38:23,446   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-10T05:38:23,450   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-10T05:38:23,572   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-10T05:38:23,573   'build/scripts-3.9' does not exist -- can't clean it
2021-07-10T05:38:23,573   removing 'build'
2021-07-10T05:38:23,703 Failed to build mdtraj
2021-07-10T05:38:23,704 ERROR: Failed to build one or more wheels
2021-07-10T05:38:23,704 Exception information:
2021-07-10T05:38:23,704 Traceback (most recent call last):
2021-07-10T05:38:23,704   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-10T05:38:23,704     status = self.run(options, args)
2021-07-10T05:38:23,704   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-10T05:38:23,704     return func(self, options, args)
2021-07-10T05:38:23,704   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-10T05:38:23,704     raise CommandError(
2021-07-10T05:38:23,704 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-10T05:38:23,707 Removed build tracker: '/tmp/pip-req-tracker-xjp_ssnk'