2021-07-10T05:54:08,247 Created temporary directory: /tmp/pip-ephem-wheel-cache-u8zejy4z
2021-07-10T05:54:08,250 Created temporary directory: /tmp/pip-req-tracker-4vb5b_d2
2021-07-10T05:54:08,251 Initialized build tracking at /tmp/pip-req-tracker-4vb5b_d2
2021-07-10T05:54:08,251 Created build tracker: /tmp/pip-req-tracker-4vb5b_d2
2021-07-10T05:54:08,251 Entered build tracker: /tmp/pip-req-tracker-4vb5b_d2
2021-07-10T05:54:08,252 Created temporary directory: /tmp/pip-wheel-33_zq7bi
2021-07-10T05:54:08,285 1 location(s) to search for versions of bhmm:
2021-07-10T05:54:08,285 * https://pypi.org/simple/bhmm/
2021-07-10T05:54:08,285 Fetching project page and analyzing links: https://pypi.org/simple/bhmm/
2021-07-10T05:54:08,286 Getting page https://pypi.org/simple/bhmm/
2021-07-10T05:54:08,287 Found index url https://pypi.org/simple
2021-07-10T05:54:08,475   Found link https://files.pythonhosted.org/packages/61/56/3de716dfa04d42acf328f665889a2ac487421543ad38ad44f4e55f8155d6/bhmm-0.3.0.tar.gz#sha256=d84fd39fcfc0b933fb835cd4af69f61fd704347e01c5eb2a3e7ce6579c184122 (from https://pypi.org/simple/bhmm/), version: 0.3.0
2021-07-10T05:54:08,476   Found link https://files.pythonhosted.org/packages/b3/52/116bf9a87fb6d56bca3d8d0c87bef8597b43e6cf0a6f2bf4aca530e4ce7f/bhmm-0.4.2.tar.gz#sha256=1bc7a713bbda2c81878d0d798d51692fedfa18707543095e2b9584989cf432b3 (from https://pypi.org/simple/bhmm/), version: 0.4.2
2021-07-10T05:54:08,476   Found link https://files.pythonhosted.org/packages/ca/58/c0eb124efbdf18cb62675a16788ec84b541a4358ebf46e1add74284c9f02/bhmm-0.5.0.tar.gz#sha256=4c094c054646e8baf850699aab398d385a79cf51d91d15f715e6c5d69d74b198 (from https://pypi.org/simple/bhmm/), version: 0.5.0
2021-07-10T05:54:08,477   Found link https://files.pythonhosted.org/packages/91/b4/c01c15efdab2a542db8cae6d49ab860644eea174a3822685cef3a3ed93ac/bhmm-0.5.1.tar.gz#sha256=7bae6d51ddfc88c2cec84ce408a2792f91bfef353621798c597773b8daab487e (from https://pypi.org/simple/bhmm/), version: 0.5.1
2021-07-10T05:54:08,477   Found link https://files.pythonhosted.org/packages/14/17/9043b8dfb2d04ab7de09b3057d37c1385056d63702e4cca539b121e806e6/bhmm-0.5.2.tar.gz#sha256=c2848188a73e7da6735ac7a636f8892f2dd939a6148437cc8fd84c4d2f5b21fb (from https://pypi.org/simple/bhmm/), version: 0.5.2
2021-07-10T05:54:08,477   Found link https://files.pythonhosted.org/packages/ee/78/d607b2d74022a4146c5d1940f9e78ffaaabc55c1defdbe9ddcba92ba08a4/bhmm-0.5.3.tar.gz#sha256=77d4e4ad546537a0f0efd78b3180a7d0d0836e92d9d5efc698fcd7740da46d6f (from https://pypi.org/simple/bhmm/), version: 0.5.3
2021-07-10T05:54:08,477   Found link https://files.pythonhosted.org/packages/a0/16/4ab0903a8a3a9ae3337193221d223b8e2fe8701960b680018bbec5342a03/bhmm-0.6.tar.gz#sha256=a5b0609801d9a61cf36892f975c67294dc24ccef8d1906031c065ec286d56fae (from https://pypi.org/simple/bhmm/), version: 0.6
2021-07-10T05:54:08,478   Found link https://files.pythonhosted.org/packages/b9/6c/552b35b4765fadfcfe796b2b6d28fe38d622a28b74dd882f7980a4acb699/bhmm-0.6.1.tar.gz#sha256=eb5a1d93d7c46f6d2ffcb6901d2bdf3297dcbd4b8835a9da1cbd98c9567f265e (from https://pypi.org/simple/bhmm/), version: 0.6.1
2021-07-10T05:54:08,478   Found link https://files.pythonhosted.org/packages/10/9c/abea596a522277674836b8ec398a30092933826cffc04ad1823be0f06b5c/bhmm-0.6.2.tar.gz#sha256=c2709c101c0e3921aac992b7b24d279f24c1455313b4eae90da83b6332cfa464 (from https://pypi.org/simple/bhmm/), version: 0.6.2
2021-07-10T05:54:08,478   Found link https://files.pythonhosted.org/packages/ac/91/27b35bfc73cfe529ed9d4133b2fa20180ccaa2c6c9f55e49779f1319ecf0/bhmm-0.6.3.tar.gz#sha256=f7a920542a18e65debb894e4287990255e32306f026892fa3b82e902d45e5dd2 (from https://pypi.org/simple/bhmm/), version: 0.6.3
2021-07-10T05:54:08,478 Skipping link: not a file: https://pypi.org/simple/bhmm/
2021-07-10T05:54:08,497 Given no hashes to check 1 links for project 'bhmm': discarding no candidates
2021-07-10T05:54:08,516 Collecting bhmm==0.3.0
2021-07-10T05:54:08,518   Created temporary directory: /tmp/pip-unpack-qbu1teat
2021-07-10T05:54:09,355   Downloading bhmm-0.3.0.tar.gz (5.8 MB)
2021-07-10T05:54:10,412   Added bhmm==0.3.0 from https://files.pythonhosted.org/packages/61/56/3de716dfa04d42acf328f665889a2ac487421543ad38ad44f4e55f8155d6/bhmm-0.3.0.tar.gz#sha256=d84fd39fcfc0b933fb835cd4af69f61fd704347e01c5eb2a3e7ce6579c184122 to build tracker '/tmp/pip-req-tracker-4vb5b_d2'
2021-07-10T05:54:10,413     Running setup.py (path:/tmp/pip-wheel-33_zq7bi/bhmm_af5dd7269ffe412496c0e42fc50a5470/setup.py) egg_info for package bhmm
2021-07-10T05:54:10,414     Created temporary directory: /tmp/pip-pip-egg-info-_vr45zri
2021-07-10T05:54:10,414     Running command python setup.py egg_info
2021-07-10T05:54:12,269     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-33_zq7bi/bhmm_af5dd7269ffe412496c0e42fc50a5470/bhmm/hidden/impl_c/hidden.pyx
2021-07-10T05:54:12,269       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T05:54:13,892     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-33_zq7bi/bhmm_af5dd7269ffe412496c0e42fc50a5470/bhmm/msm/tmatrix_sampling.pyx
2021-07-10T05:54:13,893       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T05:54:15,476     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-33_zq7bi/bhmm_af5dd7269ffe412496c0e42fc50a5470/bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T05:54:15,476       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T05:54:16,890     Compiling ./bhmm/hidden/impl_c/hidden.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T05:54:16,890     Compiling ./bhmm/output_models/impl_c/gaussian.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T05:54:16,890     Compiling ./bhmm/msm/tmatrix_sampling.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T05:54:16,890     [1/3] Cythonizing ./bhmm/hidden/impl_c/hidden.pyx
2021-07-10T05:54:16,891     [2/3] Cythonizing ./bhmm/msm/tmatrix_sampling.pyx
2021-07-10T05:54:16,891     [3/3] Cythonizing ./bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T05:54:17,043     running egg_info
2021-07-10T05:54:17,045     creating /tmp/pip-pip-egg-info-_vr45zri/bhmm.egg-info
2021-07-10T05:54:17,046     writing /tmp/pip-pip-egg-info-_vr45zri/bhmm.egg-info/PKG-INFO
2021-07-10T05:54:17,049     writing dependency_links to /tmp/pip-pip-egg-info-_vr45zri/bhmm.egg-info/dependency_links.txt
2021-07-10T05:54:17,051     writing requirements to /tmp/pip-pip-egg-info-_vr45zri/bhmm.egg-info/requires.txt
2021-07-10T05:54:17,052     writing top-level names to /tmp/pip-pip-egg-info-_vr45zri/bhmm.egg-info/top_level.txt
2021-07-10T05:54:17,053     writing manifest file '/tmp/pip-pip-egg-info-_vr45zri/bhmm.egg-info/SOURCES.txt'
2021-07-10T05:54:17,220     reading manifest file '/tmp/pip-pip-egg-info-_vr45zri/bhmm.egg-info/SOURCES.txt'
2021-07-10T05:54:17,222     reading manifest template 'MANIFEST.in'
2021-07-10T05:54:17,320     writing manifest file '/tmp/pip-pip-egg-info-_vr45zri/bhmm.egg-info/SOURCES.txt'
2021-07-10T05:54:17,547   Source in /tmp/pip-wheel-33_zq7bi/bhmm_af5dd7269ffe412496c0e42fc50a5470 has version 0.3.0, which satisfies requirement bhmm==0.3.0 from https://files.pythonhosted.org/packages/61/56/3de716dfa04d42acf328f665889a2ac487421543ad38ad44f4e55f8155d6/bhmm-0.3.0.tar.gz#sha256=d84fd39fcfc0b933fb835cd4af69f61fd704347e01c5eb2a3e7ce6579c184122
2021-07-10T05:54:17,548   Removed bhmm==0.3.0 from https://files.pythonhosted.org/packages/61/56/3de716dfa04d42acf328f665889a2ac487421543ad38ad44f4e55f8155d6/bhmm-0.3.0.tar.gz#sha256=d84fd39fcfc0b933fb835cd4af69f61fd704347e01c5eb2a3e7ce6579c184122 from build tracker '/tmp/pip-req-tracker-4vb5b_d2'
2021-07-10T05:54:17,552 Created temporary directory: /tmp/pip-unpack-vytmbh1x
2021-07-10T05:54:17,552 Building wheels for collected packages: bhmm
2021-07-10T05:54:17,556   Created temporary directory: /tmp/pip-wheel-u_nx3y5v
2021-07-10T05:54:17,557   Building wheel for bhmm (setup.py): started
2021-07-10T05:54:17,557   Destination directory: /tmp/pip-wheel-u_nx3y5v
2021-07-10T05:54:17,558   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-33_zq7bi/bhmm_af5dd7269ffe412496c0e42fc50a5470/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-33_zq7bi/bhmm_af5dd7269ffe412496c0e42fc50a5470/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-u_nx3y5v
2021-07-10T05:54:19,356   running bdist_wheel
2021-07-10T05:54:19,360   running build
2021-07-10T05:54:19,361   running build_py
2021-07-10T05:54:19,493   creating build
2021-07-10T05:54:19,494   creating build/lib.linux-armv7l-3.9
2021-07-10T05:54:19,494   creating build/lib.linux-armv7l-3.9/bhmm
2021-07-10T05:54:19,495   copying bhmm/api.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T05:54:19,498   copying bhmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T05:54:19,500   copying bhmm/version.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T05:54:19,502   creating build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T05:54:19,503   copying bhmm/tests/test_output_gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T05:54:19,505   copying bhmm/tests/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T05:54:19,507   copying bhmm/tests/test_hidden.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T05:54:19,509   copying bhmm/tests/test_mlhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T05:54:19,511   copying bhmm/tests/test_testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T05:54:19,513   copying bhmm/tests/test_init.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T05:54:19,515   copying bhmm/tests/test_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T05:54:19,517   copying bhmm/tests/test_bhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T05:54:19,521   creating build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T05:54:19,522   copying bhmm/hmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T05:54:19,524   copying bhmm/hmm/gaussian_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T05:54:19,527   copying bhmm/hmm/generic_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T05:54:19,530   copying bhmm/hmm/discrete_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T05:54:19,532   copying bhmm/hmm/generic_sampled_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T05:54:19,536   creating build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T05:54:19,537   copying bhmm/estimators/maximum_likelihood.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T05:54:19,540   copying bhmm/estimators/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T05:54:19,542   copying bhmm/estimators/bayesian_sampling.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T05:54:19,545   creating build/lib.linux-armv7l-3.9/bhmm/msm
2021-07-10T05:54:19,546   copying bhmm/msm/tmatrix_disconnected.py -> build/lib.linux-armv7l-3.9/bhmm/msm
2021-07-10T05:54:19,548   copying bhmm/msm/transition_matrix_sampling_rev.py -> build/lib.linux-armv7l-3.9/bhmm/msm
2021-07-10T05:54:19,550   copying bhmm/msm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/msm
2021-07-10T05:54:19,552   copying bhmm/msm/linalg.py -> build/lib.linux-armv7l-3.9/bhmm/msm
2021-07-10T05:54:19,556   creating build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T05:54:19,556   copying bhmm/hidden/api.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T05:54:19,559   copying bhmm/hidden/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T05:54:19,561   creating build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T05:54:19,562   copying bhmm/init/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T05:54:19,564   copying bhmm/init/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T05:54:19,566   copying bhmm/init/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T05:54:19,570   creating build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T05:54:19,571   copying bhmm/output_models/outputmodel.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T05:54:19,573   copying bhmm/output_models/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T05:54:19,576   copying bhmm/output_models/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T05:54:19,578   copying bhmm/output_models/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T05:54:19,581   creating build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T05:54:19,581   copying bhmm/output_models/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T05:54:19,584   creating build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T05:54:19,585   copying bhmm/util/types.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T05:54:19,587   copying bhmm/util/testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T05:54:19,590   copying bhmm/util/config.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T05:54:19,591   copying bhmm/util/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T05:54:19,593   copying bhmm/util/analysis.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T05:54:19,595   copying bhmm/util/statistics.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T05:54:19,597   copying bhmm/util/logger.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T05:54:19,600   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T05:54:19,601   copying bhmm/hidden/impl_python/hidden.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T05:54:19,604   copying bhmm/hidden/impl_python/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T05:54:19,606   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T05:54:19,607   copying bhmm/hidden/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T05:54:19,613   creating build/lib.linux-armv7l-3.9/examples
2021-07-10T05:54:19,614   copying bhmm/../examples/README.md -> build/lib.linux-armv7l-3.9/bhmm/../examples
2021-07-10T05:54:19,616   copying bhmm/../examples/plots.py -> build/lib.linux-armv7l-3.9/bhmm/../examples
2021-07-10T05:54:19,619   creating build/lib.linux-armv7l-3.9/examples/rnase-h-d10a
2021-07-10T05:54:19,620   copying bhmm/../examples/rnase-h-d10a/rnase-h-d10a-trace47.nc -> build/lib.linux-armv7l-3.9/bhmm/../examples/rnase-h-d10a
2021-07-10T05:54:19,623   copying bhmm/../examples/rnase-h-d10a/README.md -> build/lib.linux-armv7l-3.9/bhmm/../examples/rnase-h-d10a
2021-07-10T05:54:19,626   copying bhmm/../examples/rnase-h-d10a/test_mlhmm.py -> build/lib.linux-armv7l-3.9/bhmm/../examples/rnase-h-d10a
2021-07-10T05:54:19,628   copying bhmm/../examples/rnase-h-d10a/generate-figure.py -> build/lib.linux-armv7l-3.9/bhmm/../examples/rnase-h-d10a
2021-07-10T05:54:19,630   creating build/lib.linux-armv7l-3.9/examples/p5ab-hairpin
2021-07-10T05:54:19,631   copying bhmm/../examples/p5ab-hairpin/README.md -> build/lib.linux-armv7l-3.9/bhmm/../examples/p5ab-hairpin
2021-07-10T05:54:19,633   copying bhmm/../examples/p5ab-hairpin/fiber3-trace011.nc -> build/lib.linux-armv7l-3.9/bhmm/../examples/p5ab-hairpin
2021-07-10T05:54:19,751   copying bhmm/../examples/p5ab-hairpin/hairpin-example.py -> build/lib.linux-armv7l-3.9/bhmm/../examples/p5ab-hairpin
2021-07-10T05:54:19,753   copying bhmm/../examples/p5ab-hairpin/generate-figure.py -> build/lib.linux-armv7l-3.9/bhmm/../examples/p5ab-hairpin
2021-07-10T05:54:19,755   creating build/lib.linux-armv7l-3.9/examples/synthetic-three-state-model
2021-07-10T05:54:19,756   copying bhmm/../examples/synthetic-three-state-model/README.md -> build/lib.linux-armv7l-3.9/bhmm/../examples/synthetic-three-state-model
2021-07-10T05:54:19,759   copying bhmm/../examples/synthetic-three-state-model/synthetic-three-state-model-bhmm-statistics.tex -> build/lib.linux-armv7l-3.9/bhmm/../examples/synthetic-three-state-model
2021-07-10T05:54:19,761   copying bhmm/../examples/synthetic-three-state-model/generate-figure.py -> build/lib.linux-armv7l-3.9/bhmm/../examples/synthetic-three-state-model
2021-07-10T05:54:19,764   copying bhmm/../examples/synthetic-three-state-model/synthetic-example.py -> build/lib.linux-armv7l-3.9/bhmm/../examples/synthetic-three-state-model
2021-07-10T05:54:19,766   creating build/lib.linux-armv7l-3.9/examples/discrete_1d_2min
2021-07-10T05:54:19,767   copying bhmm/../examples/discrete_1d_2min/2well_P.dat -> build/lib.linux-armv7l-3.9/bhmm/../examples/discrete_1d_2min
2021-07-10T05:54:19,770   copying bhmm/../examples/discrete_1d_2min/run.py -> build/lib.linux-armv7l-3.9/bhmm/../examples/discrete_1d_2min
2021-07-10T05:54:19,772   copying bhmm/../examples/discrete_1d_2min/2well_traj_100K.dat -> build/lib.linux-armv7l-3.9/bhmm/../examples/discrete_1d_2min
2021-07-10T05:54:19,784   copying bhmm/../examples/discrete_1d_2min/2well_energy.dat -> build/lib.linux-armv7l-3.9/bhmm/../examples/discrete_1d_2min
2021-07-10T05:54:19,787   creating build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T05:54:19,787   copying bhmm/tests/data/2well_P.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T05:54:19,790   copying bhmm/tests/data/2well_traj_100K.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T05:54:19,800   copying bhmm/tests/data/2well_energy.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T05:54:19,810   running build_ext
2021-07-10T05:54:19,816   building 'bhmm.hidden.impl_c.hidden' extension
2021-07-10T05:54:19,816   creating build/temp.linux-armv7l-3.9
2021-07-10T05:54:19,817   creating build/temp.linux-armv7l-3.9/bhmm
2021-07-10T05:54:19,817   creating build/temp.linux-armv7l-3.9/bhmm/hidden
2021-07-10T05:54:19,818   creating build/temp.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T05:54:19,819   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/_hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o
2021-07-10T05:54:19,961   ./bhmm/hidden/impl_c/_hidden.c: In function ‘_compute_viterbi’:
2021-07-10T05:54:19,962   ./bhmm/hidden/impl_c/_hidden.c:207:26: warning: unused variable ‘p’ [-Wunused-variable]
2021-07-10T05:54:19,962     207 |     double sum, maxprod, p;
2021-07-10T05:54:19,962         |                          ^
2021-07-10T05:54:19,962   ./bhmm/hidden/impl_c/_hidden.c:207:17: warning: unused variable ‘maxprod’ [-Wunused-variable]
2021-07-10T05:54:19,962     207 |     double sum, maxprod, p;
2021-07-10T05:54:19,962         |                 ^~~~~~~
2021-07-10T05:54:20,425   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o
2021-07-10T05:54:20,822   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T05:54:20,822                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T05:54:20,823                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T05:54:20,823                    from ./bhmm/hidden/impl_c/hidden.c:638:
2021-07-10T05:54:20,823   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T05:54:20,823      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T05:54:20,823         |  ^~~~~~~
2021-07-10T05:54:27,091   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o -o build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so
2021-07-10T05:54:27,231   building 'bhmm.output_models.impl_c.gaussian' extension
2021-07-10T05:54:27,232   creating build/temp.linux-armv7l-3.9/bhmm/output_models
2021-07-10T05:54:27,232   creating build/temp.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T05:54:27,233   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o
2021-07-10T05:54:27,406   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o
2021-07-10T05:54:27,791   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T05:54:27,791                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T05:54:27,791                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T05:54:27,792                    from ./bhmm/output_models/impl_c/gaussian.c:638:
2021-07-10T05:54:27,792   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T05:54:27,792      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T05:54:27,792         |  ^~~~~~~
2021-07-10T05:54:38,254   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so
2021-07-10T05:54:38,390   building 'bhmm.msm.tmatrix_sampling' extension
2021-07-10T05:54:38,391   creating build/temp.linux-armv7l-3.9/bhmm/msm
2021-07-10T05:54:38,391   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/msm/tmatrix_sampling.c -o build/temp.linux-armv7l-3.9/./bhmm/msm/tmatrix_sampling.o
2021-07-10T05:54:38,778   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T05:54:38,778                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T05:54:38,778                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T05:54:38,779                    from ./bhmm/msm/tmatrix_sampling.c:634:
2021-07-10T05:54:38,779   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T05:54:38,779      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T05:54:38,779         |  ^~~~~~~
2021-07-10T05:54:45,769   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/msm/tmatrix_sampling.o -o build/lib.linux-armv7l-3.9/bhmm/msm/tmatrix_sampling.cpython-39-arm-linux-gnueabihf.so
2021-07-10T05:54:45,917   installing to build/bdist.linux-armv7l/wheel
2021-07-10T05:54:45,917   running install
2021-07-10T05:54:45,918   running install_lib
2021-07-10T05:54:45,923   creating build/bdist.linux-armv7l
2021-07-10T05:54:45,923   creating build/bdist.linux-armv7l/wheel
2021-07-10T05:54:45,925   creating build/bdist.linux-armv7l/wheel/examples
2021-07-10T05:54:45,926   copying build/lib.linux-armv7l-3.9/examples/README.md -> build/bdist.linux-armv7l/wheel/examples
2021-07-10T05:54:45,929   creating build/bdist.linux-armv7l/wheel/examples/rnase-h-d10a
2021-07-10T05:54:45,930   copying build/lib.linux-armv7l-3.9/examples/rnase-h-d10a/rnase-h-d10a-trace47.nc -> build/bdist.linux-armv7l/wheel/examples/rnase-h-d10a
2021-07-10T05:54:45,934   copying build/lib.linux-armv7l-3.9/examples/rnase-h-d10a/README.md -> build/bdist.linux-armv7l/wheel/examples/rnase-h-d10a
2021-07-10T05:54:45,936   copying build/lib.linux-armv7l-3.9/examples/rnase-h-d10a/test_mlhmm.py -> build/bdist.linux-armv7l/wheel/examples/rnase-h-d10a
2021-07-10T05:54:45,938   copying build/lib.linux-armv7l-3.9/examples/rnase-h-d10a/generate-figure.py -> build/bdist.linux-armv7l/wheel/examples/rnase-h-d10a
2021-07-10T05:54:45,940   creating build/bdist.linux-armv7l/wheel/examples/p5ab-hairpin
2021-07-10T05:54:45,941   copying build/lib.linux-armv7l-3.9/examples/p5ab-hairpin/README.md -> build/bdist.linux-armv7l/wheel/examples/p5ab-hairpin
2021-07-10T05:54:45,944   copying build/lib.linux-armv7l-3.9/examples/p5ab-hairpin/fiber3-trace011.nc -> build/bdist.linux-armv7l/wheel/examples/p5ab-hairpin
2021-07-10T05:54:46,079   copying build/lib.linux-armv7l-3.9/examples/p5ab-hairpin/hairpin-example.py -> build/bdist.linux-armv7l/wheel/examples/p5ab-hairpin
2021-07-10T05:54:46,080   copying build/lib.linux-armv7l-3.9/examples/p5ab-hairpin/generate-figure.py -> build/bdist.linux-armv7l/wheel/examples/p5ab-hairpin
2021-07-10T05:54:46,083   creating build/bdist.linux-armv7l/wheel/examples/synthetic-three-state-model
2021-07-10T05:54:46,084   copying build/lib.linux-armv7l-3.9/examples/synthetic-three-state-model/README.md -> build/bdist.linux-armv7l/wheel/examples/synthetic-three-state-model
2021-07-10T05:54:46,086   copying build/lib.linux-armv7l-3.9/examples/synthetic-three-state-model/synthetic-three-state-model-bhmm-statistics.tex -> build/bdist.linux-armv7l/wheel/examples/synthetic-three-state-model
2021-07-10T05:54:46,088   copying build/lib.linux-armv7l-3.9/examples/synthetic-three-state-model/generate-figure.py -> build/bdist.linux-armv7l/wheel/examples/synthetic-three-state-model
2021-07-10T05:54:46,091   copying build/lib.linux-armv7l-3.9/examples/synthetic-three-state-model/synthetic-example.py -> build/bdist.linux-armv7l/wheel/examples/synthetic-three-state-model
2021-07-10T05:54:46,094   creating build/bdist.linux-armv7l/wheel/examples/discrete_1d_2min
2021-07-10T05:54:46,095   copying build/lib.linux-armv7l-3.9/examples/discrete_1d_2min/2well_P.dat -> build/bdist.linux-armv7l/wheel/examples/discrete_1d_2min
2021-07-10T05:54:46,097   copying build/lib.linux-armv7l-3.9/examples/discrete_1d_2min/run.py -> build/bdist.linux-armv7l/wheel/examples/discrete_1d_2min
2021-07-10T05:54:46,099   copying build/lib.linux-armv7l-3.9/examples/discrete_1d_2min/2well_traj_100K.dat -> build/bdist.linux-armv7l/wheel/examples/discrete_1d_2min
2021-07-10T05:54:46,111   copying build/lib.linux-armv7l-3.9/examples/discrete_1d_2min/2well_energy.dat -> build/bdist.linux-armv7l/wheel/examples/discrete_1d_2min
2021-07-10T05:54:46,113   copying build/lib.linux-armv7l-3.9/examples/plots.py -> build/bdist.linux-armv7l/wheel/examples
2021-07-10T05:54:46,116   creating build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T05:54:46,117   copying build/lib.linux-armv7l-3.9/bhmm/api.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T05:54:46,120   copying build/lib.linux-armv7l-3.9/bhmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T05:54:46,122   creating build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T05:54:46,123   copying build/lib.linux-armv7l-3.9/bhmm/init/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T05:54:46,125   copying build/lib.linux-armv7l-3.9/bhmm/init/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T05:54:46,127   copying build/lib.linux-armv7l-3.9/bhmm/init/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T05:54:46,130   creating build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T05:54:46,131   copying build/lib.linux-armv7l-3.9/bhmm/hmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T05:54:46,134   copying build/lib.linux-armv7l-3.9/bhmm/hmm/gaussian_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T05:54:46,136   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T05:54:46,139   copying build/lib.linux-armv7l-3.9/bhmm/hmm/discrete_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T05:54:46,141   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_sampled_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T05:54:46,145   creating build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T05:54:46,146   copying build/lib.linux-armv7l-3.9/bhmm/estimators/maximum_likelihood.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T05:54:46,149   copying build/lib.linux-armv7l-3.9/bhmm/estimators/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T05:54:46,151   copying build/lib.linux-armv7l-3.9/bhmm/estimators/bayesian_sampling.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T05:54:46,155   creating build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T05:54:46,157   creating build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T05:54:46,158   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T05:54:46,160   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T05:54:46,173   copying build/lib.linux-armv7l-3.9/bhmm/output_models/outputmodel.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T05:54:46,175   copying build/lib.linux-armv7l-3.9/bhmm/output_models/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T05:54:46,178   copying build/lib.linux-armv7l-3.9/bhmm/output_models/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T05:54:46,180   copying build/lib.linux-armv7l-3.9/bhmm/output_models/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T05:54:46,184   creating build/bdist.linux-armv7l/wheel/bhmm/msm
2021-07-10T05:54:46,185   copying build/lib.linux-armv7l-3.9/bhmm/msm/tmatrix_sampling.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/msm
2021-07-10T05:54:46,199   copying build/lib.linux-armv7l-3.9/bhmm/msm/tmatrix_disconnected.py -> build/bdist.linux-armv7l/wheel/bhmm/msm
2021-07-10T05:54:46,201   copying build/lib.linux-armv7l-3.9/bhmm/msm/transition_matrix_sampling_rev.py -> build/bdist.linux-armv7l/wheel/bhmm/msm
2021-07-10T05:54:46,204   copying build/lib.linux-armv7l-3.9/bhmm/msm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/msm
2021-07-10T05:54:46,206   copying build/lib.linux-armv7l-3.9/bhmm/msm/linalg.py -> build/bdist.linux-armv7l/wheel/bhmm/msm
2021-07-10T05:54:46,209   creating build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T05:54:46,210   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_output_gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T05:54:46,212   copying build/lib.linux-armv7l-3.9/bhmm/tests/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T05:54:46,214   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T05:54:46,217   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_mlhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T05:54:46,219   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T05:54:46,222   creating build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T05:54:46,223   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_P.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T05:54:46,226   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_traj_100K.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T05:54:46,236   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_energy.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T05:54:46,239   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_init.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T05:54:46,241   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T05:54:46,243   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_bhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T05:54:46,246   creating build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T05:54:46,247   copying build/lib.linux-armv7l-3.9/bhmm/util/types.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T05:54:46,251   copying build/lib.linux-armv7l-3.9/bhmm/util/testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T05:54:46,254   copying build/lib.linux-armv7l-3.9/bhmm/util/config.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T05:54:46,256   copying build/lib.linux-armv7l-3.9/bhmm/util/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T05:54:46,258   copying build/lib.linux-armv7l-3.9/bhmm/util/analysis.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T05:54:46,261   copying build/lib.linux-armv7l-3.9/bhmm/util/statistics.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T05:54:46,264   copying build/lib.linux-armv7l-3.9/bhmm/util/logger.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T05:54:46,266   creating build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T05:54:46,267   copying build/lib.linux-armv7l-3.9/bhmm/hidden/api.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T05:54:46,271   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T05:54:46,272   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T05:54:46,275   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T05:54:46,278   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T05:54:46,279   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T05:54:46,281   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T05:54:46,295   copying build/lib.linux-armv7l-3.9/bhmm/hidden/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T05:54:46,297   copying build/lib.linux-armv7l-3.9/bhmm/version.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T05:54:46,298   running install_egg_info
2021-07-10T05:54:46,327   running egg_info
2021-07-10T05:54:46,328   writing bhmm.egg-info/PKG-INFO
2021-07-10T05:54:46,330   writing dependency_links to bhmm.egg-info/dependency_links.txt
2021-07-10T05:54:46,332   writing requirements to bhmm.egg-info/requires.txt
2021-07-10T05:54:46,334   writing top-level names to bhmm.egg-info/top_level.txt
2021-07-10T05:54:46,359   reading manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T05:54:46,364   reading manifest template 'MANIFEST.in'
2021-07-10T05:54:46,475   writing manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T05:54:46,477   Copying bhmm.egg-info to build/bdist.linux-armv7l/wheel/bhmm-0.3.0-py3.9.egg-info
2021-07-10T05:54:46,491   running install_scripts
2021-07-10T05:54:46,544   creating build/bdist.linux-armv7l/wheel/bhmm-0.3.0.dist-info/WHEEL
2021-07-10T05:54:46,547   creating '/tmp/pip-wheel-u_nx3y5v/bhmm-0.3.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T05:54:46,549   adding 'bhmm/__init__.py'
2021-07-10T05:54:46,552   adding 'bhmm/api.py'
2021-07-10T05:54:46,553   adding 'bhmm/version.py'
2021-07-10T05:54:46,555   adding 'bhmm/estimators/__init__.py'
2021-07-10T05:54:46,557   adding 'bhmm/estimators/bayesian_sampling.py'
2021-07-10T05:54:46,560   adding 'bhmm/estimators/maximum_likelihood.py'
2021-07-10T05:54:46,562   adding 'bhmm/hidden/__init__.py'
2021-07-10T05:54:46,564   adding 'bhmm/hidden/api.py'
2021-07-10T05:54:46,566   adding 'bhmm/hidden/impl_c/__init__.py'
2021-07-10T05:54:46,659   adding 'bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T05:54:46,665   adding 'bhmm/hidden/impl_python/__init__.py'
2021-07-10T05:54:46,666   adding 'bhmm/hidden/impl_python/hidden.py'
2021-07-10T05:54:46,668   adding 'bhmm/hmm/__init__.py'
2021-07-10T05:54:46,669   adding 'bhmm/hmm/discrete_hmm.py'
2021-07-10T05:54:46,671   adding 'bhmm/hmm/gaussian_hmm.py'
2021-07-10T05:54:46,673   adding 'bhmm/hmm/generic_hmm.py'
2021-07-10T05:54:46,675   adding 'bhmm/hmm/generic_sampled_hmm.py'
2021-07-10T05:54:46,677   adding 'bhmm/init/__init__.py'
2021-07-10T05:54:46,678   adding 'bhmm/init/discrete.py'
2021-07-10T05:54:46,679   adding 'bhmm/init/gaussian.py'
2021-07-10T05:54:46,681   adding 'bhmm/msm/__init__.py'
2021-07-10T05:54:46,683   adding 'bhmm/msm/linalg.py'
2021-07-10T05:54:46,684   adding 'bhmm/msm/tmatrix_disconnected.py'
2021-07-10T05:54:46,773   adding 'bhmm/msm/tmatrix_sampling.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T05:54:46,778   adding 'bhmm/msm/transition_matrix_sampling_rev.py'
2021-07-10T05:54:46,780   adding 'bhmm/output_models/__init__.py'
2021-07-10T05:54:46,782   adding 'bhmm/output_models/discrete.py'
2021-07-10T05:54:46,785   adding 'bhmm/output_models/gaussian.py'
2021-07-10T05:54:46,786   adding 'bhmm/output_models/outputmodel.py'
2021-07-10T05:54:46,788   adding 'bhmm/output_models/impl_c/__init__.py'
2021-07-10T05:54:46,860   adding 'bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T05:54:46,865   adding 'bhmm/tests/__init__.py'
2021-07-10T05:54:46,866   adding 'bhmm/tests/test_bhmm.py'
2021-07-10T05:54:46,868   adding 'bhmm/tests/test_hidden.py'
2021-07-10T05:54:46,870   adding 'bhmm/tests/test_hmm.py'
2021-07-10T05:54:46,871   adding 'bhmm/tests/test_init.py'
2021-07-10T05:54:46,872   adding 'bhmm/tests/test_mlhmm.py'
2021-07-10T05:54:46,874   adding 'bhmm/tests/test_output_gaussian.py'
2021-07-10T05:54:46,875   adding 'bhmm/tests/test_testsystems.py'
2021-07-10T05:54:46,877   adding 'bhmm/tests/data/2well_P.dat'
2021-07-10T05:54:46,878   adding 'bhmm/tests/data/2well_energy.dat'
2021-07-10T05:54:46,956   adding 'bhmm/tests/data/2well_traj_100K.dat'
2021-07-10T05:54:46,961   adding 'bhmm/util/__init__.py'
2021-07-10T05:54:46,962   adding 'bhmm/util/analysis.py'
2021-07-10T05:54:46,963   adding 'bhmm/util/config.py'
2021-07-10T05:54:46,964   adding 'bhmm/util/logger.py'
2021-07-10T05:54:46,966   adding 'bhmm/util/statistics.py'
2021-07-10T05:54:46,968   adding 'bhmm/util/testsystems.py'
2021-07-10T05:54:46,969   adding 'bhmm/util/types.py'
2021-07-10T05:54:46,972   adding 'examples/README.md'
2021-07-10T05:54:46,974   adding 'examples/plots.py'
2021-07-10T05:54:46,976   adding 'examples/discrete_1d_2min/2well_P.dat'
2021-07-10T05:54:46,977   adding 'examples/discrete_1d_2min/2well_energy.dat'
2021-07-10T05:54:47,055   adding 'examples/discrete_1d_2min/2well_traj_100K.dat'
2021-07-10T05:54:47,058   adding 'examples/discrete_1d_2min/run.py'
2021-07-10T05:54:47,060   adding 'examples/p5ab-hairpin/README.md'
2021-07-10T05:54:47,738   adding 'examples/p5ab-hairpin/fiber3-trace011.nc'
2021-07-10T05:54:47,783   adding 'examples/p5ab-hairpin/generate-figure.py'
2021-07-10T05:54:47,784   adding 'examples/p5ab-hairpin/hairpin-example.py'
2021-07-10T05:54:47,786   adding 'examples/rnase-h-d10a/README.md'
2021-07-10T05:54:47,787   adding 'examples/rnase-h-d10a/generate-figure.py'
2021-07-10T05:54:47,791   adding 'examples/rnase-h-d10a/rnase-h-d10a-trace47.nc'
2021-07-10T05:54:47,792   adding 'examples/rnase-h-d10a/test_mlhmm.py'
2021-07-10T05:54:47,794   adding 'examples/synthetic-three-state-model/README.md'
2021-07-10T05:54:47,796   adding 'examples/synthetic-three-state-model/generate-figure.py'
2021-07-10T05:54:47,797   adding 'examples/synthetic-three-state-model/synthetic-example.py'
2021-07-10T05:54:47,799   adding 'examples/synthetic-three-state-model/synthetic-three-state-model-bhmm-statistics.tex'
2021-07-10T05:54:47,800   adding 'bhmm-0.3.0.dist-info/METADATA'
2021-07-10T05:54:47,800   adding 'bhmm-0.3.0.dist-info/WHEEL'
2021-07-10T05:54:47,801   adding 'bhmm-0.3.0.dist-info/top_level.txt'
2021-07-10T05:54:47,803   adding 'bhmm-0.3.0.dist-info/RECORD'
2021-07-10T05:54:47,896   removing build/bdist.linux-armv7l/wheel
2021-07-10T05:54:48,071   Building wheel for bhmm (setup.py): finished with status 'done'
2021-07-10T05:54:48,151   Created wheel for bhmm: filename=bhmm-0.3.0-cp39-cp39-linux_armv7l.whl size=6112451 sha256=097bb936f3aed9897c485446deef42315285aa744f2c91ea97ca79e517c7097a
2021-07-10T05:54:48,151   Stored in directory: /tmp/pip-ephem-wheel-cache-u8zejy4z/wheels/16/bb/0a/09a3e3dfcd5b370525d8666be142562424ae66f774d48b19ee
2021-07-10T05:54:48,165 Successfully built bhmm
2021-07-10T05:54:48,372 Removed build tracker: '/tmp/pip-req-tracker-4vb5b_d2'