2021-07-10T06:14:41,628 Created temporary directory: /tmp/pip-ephem-wheel-cache-ls0ei1ws 2021-07-10T06:14:41,631 Created temporary directory: /tmp/pip-req-tracker-8eg63920 2021-07-10T06:14:41,632 Initialized build tracking at /tmp/pip-req-tracker-8eg63920 2021-07-10T06:14:41,632 Created build tracker: /tmp/pip-req-tracker-8eg63920 2021-07-10T06:14:41,632 Entered build tracker: /tmp/pip-req-tracker-8eg63920 2021-07-10T06:14:41,633 Created temporary directory: /tmp/pip-wheel-mn2fq6w_ 2021-07-10T06:14:41,664 1 location(s) to search for versions of scikit-bio: 2021-07-10T06:14:41,664 * https://pypi.org/simple/scikit-bio/ 2021-07-10T06:14:41,664 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2021-07-10T06:14:41,665 Getting page https://pypi.org/simple/scikit-bio/ 2021-07-10T06:14:41,666 Found index url https://pypi.org/simple 2021-07-10T06:14:41,763 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz#sha256=e68193db29015e8f861b7d548f432384aa1741575028ce9a138b39ebee66e1ed (from https://pypi.org/simple/scikit-bio/), version: 0.1.0 2021-07-10T06:14:41,763 Found link https://files.pythonhosted.org/packages/91/8b/ea20137d6b84808b3dd6a7ad162dd80dcda40934428824d1ce87b8983b81/scikit-bio-0.1.1.tar.gz#sha256=f758a5136a211cba16c8e6f1ed250f0fadb27fab436c5b7a73902dbb114618df (from https://pypi.org/simple/scikit-bio/), version: 0.1.1 2021-07-10T06:14:41,763 Found link https://files.pythonhosted.org/packages/5f/6e/adc704fa25e9789bfc17882261010320ea9c6148d9d2e28083a5e57a3e9f/scikit-bio-0.1.2.tar.gz#sha256=bdd9cb68dcc5e3ffc00fa5ae21e9e0f92f1f9c2e5a24a671596bb39d0d3e02a7 (from https://pypi.org/simple/scikit-bio/), version: 0.1.2 2021-07-10T06:14:41,764 Found link https://files.pythonhosted.org/packages/da/03/82ad31dc38265135b432b34b2cec0680fee841e0bdc5f90b5a4596beafb3/scikit-bio-0.1.3.tar.gz#sha256=11af62a5d8302da204c004b16bc625cc055e7322633b289353929ccc4b872e74 (from https://pypi.org/simple/scikit-bio/), version: 0.1.3 2021-07-10T06:14:41,764 Found link https://files.pythonhosted.org/packages/b0/70/92b5bb9fc66ef4d54e1bf67626bda04a41ed723b5eb25c018154728e2b26/scikit-bio-0.1.4.tar.gz#sha256=466d50ced117dafe24f734eb6afd2ec0465caebe5d3e775402582ac77eecc2a8 (from https://pypi.org/simple/scikit-bio/), version: 0.1.4 2021-07-10T06:14:41,764 Found link https://files.pythonhosted.org/packages/5f/21/c6879978a222a04f1ac1b0a535a18111c84367ee22a5c93e6c0503f57e01/scikit-bio-0.1.5.tar.gz#sha256=f136639c66f48d1e83b9799e044c49f0febefa4ead4b4fb7c88ec503147bdb03 (from https://pypi.org/simple/scikit-bio/), version: 0.1.5 2021-07-10T06:14:41,765 Found link https://files.pythonhosted.org/packages/99/76/0c0bd2d6d9973a001477535c68772ff35f543324e36afe21c4f7d6721327/scikit-bio-0.2.0.tar.gz#sha256=348687b973be55505ec7e90c40a21921533d3b5021599705922b8c730cb8c872 (from https://pypi.org/simple/scikit-bio/), version: 0.2.0 2021-07-10T06:14:41,765 Found link https://files.pythonhosted.org/packages/7b/74/77cf9b45ea0df4d3b8c3adcbd6f59e0b0603d1a3a2fed1b1ae6365232ac6/scikit-bio-0.2.1.tar.gz#sha256=adc7a3aa93ca7a3f642531e2cf64778ae243087fd6279d5354fdf157943f41cb (from https://pypi.org/simple/scikit-bio/), version: 0.2.1 2021-07-10T06:14:41,765 Found link https://files.pythonhosted.org/packages/bd/0a/6a5906fd53616c0763c5f445b5dc42907720f344318a1f07627986d22f33/scikit-bio-0.2.2.tar.gz#sha256=6c5fb4b6baec0abde209d33e86e95ff4a776f653a6c3916aa95831eafe03472a (from https://pypi.org/simple/scikit-bio/), version: 0.2.2 2021-07-10T06:14:41,765 Found link https://files.pythonhosted.org/packages/8e/70/559566c9dbde9435360058c420a819b4e8ce844f7ebd94daec9836f4be24/scikit-bio-0.2.3.tar.gz#sha256=5feec63b49249360d2bb55d0163d7066f530d163b5474a3319ec197e7e74c683 (from https://pypi.org/simple/scikit-bio/), version: 0.2.3 2021-07-10T06:14:41,766 Found link https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz#sha256=90a3f1ffd9401d8a8f8c1ba8fdd1ea63577fb2063209440d27e8e0834322a1e3 (from https://pypi.org/simple/scikit-bio/), version: 0.4.0 2021-07-10T06:14:41,766 Found link https://files.pythonhosted.org/packages/12/02/81edd2941d892cb4d0144be716c341b9a6fd255046c08d1b7bd6c70a0112/scikit-bio-0.4.1.tar.gz#sha256=66e755b6c7d5b861c7eb63aeb46f4d9afe74ee0ac93c1215e0aa57003e573b0b (from https://pypi.org/simple/scikit-bio/), version: 0.4.1 2021-07-10T06:14:41,766 Found link https://files.pythonhosted.org/packages/a8/87/23635a6a9b6a1abdf78ccfc1e71929570be4c4ab4004eab66da9dd4a5c6a/scikit-bio-0.4.2.tar.gz#sha256=fe33a6cd7e6eb3fd8c088491422e499cfb36fab63c38659b587230f3dd63d91a (from https://pypi.org/simple/scikit-bio/), version: 0.4.2 2021-07-10T06:14:41,767 Found link https://files.pythonhosted.org/packages/95/60/f4c269a6dfaf9d027adba6a81497e5d238cf5e604f53206b4ea50ed1145f/scikit-bio-0.5.0.zip#sha256=482194dd827b86fdf340d1576b07d70f8c62158d471d733fa3e73fe316afaa3a (from https://pypi.org/simple/scikit-bio/), version: 0.5.0 2021-07-10T06:14:41,767 Found link https://files.pythonhosted.org/packages/e5/7e/cf03a7e53da18ae6a847894384838e9a36a98b48909a3f347ff6077c7304/scikit-bio-0.5.1.tar.gz#sha256=2d606f0bbd50df3e5814c10260d0e1a35484ecf141e5e5c809d9c9dbf87a3655 (from https://pypi.org/simple/scikit-bio/), version: 0.5.1 2021-07-10T06:14:41,767 Found link https://files.pythonhosted.org/packages/98/ee/08995b89efccf2bf8a0307a1eb7825dceb199e64a3db24cec832c0ca0baf/scikit-bio-0.5.2.tar.gz#sha256=566c83249d2d338104d106c3a8ba36fa1afeabf10ead8e95b84605b71c65b743 (from https://pypi.org/simple/scikit-bio/), version: 0.5.2 2021-07-10T06:14:41,767 Found link https://files.pythonhosted.org/packages/39/07/4e3bcf7a7c254154ac445684d5f646ccc4a6ce6bfc3b0cc8030136215b8a/scikit-bio-0.5.3.tar.gz#sha256=fbeebe39b0026601fa0f641fdad45abc7c2810fa75d43142f3c5473aff07ff59 (from https://pypi.org/simple/scikit-bio/), version: 0.5.3 2021-07-10T06:14:41,768 Found link https://files.pythonhosted.org/packages/ed/e0/3ae790c5c260be0968a6d41108e35f327365e5460c9d8672714fd136817d/scikit-bio-0.5.4.tar.gz#sha256=3243f1995ef24643c09ff4d9391a79528aadd8232e5aa5d66c38d7b2e0c92f24 (from https://pypi.org/simple/scikit-bio/), version: 0.5.4 2021-07-10T06:14:41,768 Found link https://files.pythonhosted.org/packages/2d/ff/3a909ae8c212305846f7e87f86f3902408b55b958eccedf5d4349e76c671/scikit-bio-0.5.5.tar.gz#sha256=9fa813be66e88a994f7b7a68b8ba2216e205c525caa8585386ebdeebed6428df (from https://pypi.org/simple/scikit-bio/), version: 0.5.5 2021-07-10T06:14:41,768 Found link https://files.pythonhosted.org/packages/66/b0/054ef21e024d24422882958072973cd192b492e004a3ce4e9614ef173d9b/scikit-bio-0.5.6.tar.gz#sha256=48b73ec53ce0ff2c2e3e05f3cfcf93527c1525a8d3e9dd4ae317b4219c37f0ea (from https://pypi.org/simple/scikit-bio/), version: 0.5.6 2021-07-10T06:14:41,769 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2021-07-10T06:14:41,789 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2021-07-10T06:14:41,808 Collecting scikit-bio==0.4.0 2021-07-10T06:14:41,809 Created temporary directory: /tmp/pip-unpack-67bu0nng 2021-07-10T06:14:44,798 Downloading scikit-bio-0.4.0.tar.gz (8.0 MB) 2021-07-10T06:14:47,146 Added scikit-bio==0.4.0 from https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz#sha256=90a3f1ffd9401d8a8f8c1ba8fdd1ea63577fb2063209440d27e8e0834322a1e3 to build tracker '/tmp/pip-req-tracker-8eg63920' 2021-07-10T06:14:47,147 Running setup.py (path:/tmp/pip-wheel-mn2fq6w_/scikit-bio_edf09672aaf14c6da6ed8435b5c9e218/setup.py) egg_info for package scikit-bio 2021-07-10T06:14:47,148 Created temporary directory: /tmp/pip-pip-egg-info-n88_jq3z 2021-07-10T06:14:47,148 Running command python setup.py egg_info 2021-07-10T06:14:48,184 running egg_info 2021-07-10T06:14:48,186 creating /tmp/pip-pip-egg-info-n88_jq3z/scikit_bio.egg-info 2021-07-10T06:14:48,187 writing /tmp/pip-pip-egg-info-n88_jq3z/scikit_bio.egg-info/PKG-INFO 2021-07-10T06:14:48,189 writing dependency_links to /tmp/pip-pip-egg-info-n88_jq3z/scikit_bio.egg-info/dependency_links.txt 2021-07-10T06:14:48,192 writing requirements to /tmp/pip-pip-egg-info-n88_jq3z/scikit_bio.egg-info/requires.txt 2021-07-10T06:14:48,192 writing top-level names to /tmp/pip-pip-egg-info-n88_jq3z/scikit_bio.egg-info/top_level.txt 2021-07-10T06:14:48,194 writing manifest file '/tmp/pip-pip-egg-info-n88_jq3z/scikit_bio.egg-info/SOURCES.txt' 2021-07-10T06:14:48,688 reading manifest file '/tmp/pip-pip-egg-info-n88_jq3z/scikit_bio.egg-info/SOURCES.txt' 2021-07-10T06:14:48,689 reading manifest template 'MANIFEST.in' 2021-07-10T06:14:48,730 no previously-included directories found matching 'doc/build' 2021-07-10T06:14:48,733 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T06:14:48,735 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T06:14:48,735 adding license file 'COPYING.txt' 2021-07-10T06:14:48,763 writing manifest file '/tmp/pip-pip-egg-info-n88_jq3z/scikit_bio.egg-info/SOURCES.txt' 2021-07-10T06:14:48,871 Source in /tmp/pip-wheel-mn2fq6w_/scikit-bio_edf09672aaf14c6da6ed8435b5c9e218 has version 0.4.0, which satisfies requirement scikit-bio==0.4.0 from https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz#sha256=90a3f1ffd9401d8a8f8c1ba8fdd1ea63577fb2063209440d27e8e0834322a1e3 2021-07-10T06:14:48,872 Removed scikit-bio==0.4.0 from https://files.pythonhosted.org/packages/d9/cb/c4684ce5c521de96411c2b88255feb45077e0b2df7ebbdf946abe5caaf25/scikit-bio-0.4.0.tar.gz#sha256=90a3f1ffd9401d8a8f8c1ba8fdd1ea63577fb2063209440d27e8e0834322a1e3 from build tracker '/tmp/pip-req-tracker-8eg63920' 2021-07-10T06:14:48,876 Created temporary directory: /tmp/pip-unpack-pjo1qy8a 2021-07-10T06:14:48,877 Building wheels for collected packages: scikit-bio 2021-07-10T06:14:48,880 Created temporary directory: /tmp/pip-wheel-9efsuz8_ 2021-07-10T06:14:48,881 Building wheel for scikit-bio (setup.py): started 2021-07-10T06:14:48,881 Destination directory: /tmp/pip-wheel-9efsuz8_ 2021-07-10T06:14:48,881 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mn2fq6w_/scikit-bio_edf09672aaf14c6da6ed8435b5c9e218/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mn2fq6w_/scikit-bio_edf09672aaf14c6da6ed8435b5c9e218/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-9efsuz8_ 2021-07-10T06:14:49,909 running bdist_wheel 2021-07-10T06:14:49,913 running build 2021-07-10T06:14:49,914 running build_py 2021-07-10T06:14:50,054 creating build 2021-07-10T06:14:50,055 creating build/lib.linux-armv7l-3.9 2021-07-10T06:14:50,055 creating build/lib.linux-armv7l-3.9/skbio 2021-07-10T06:14:50,056 copying skbio/_base.py -> build/lib.linux-armv7l-3.9/skbio 2021-07-10T06:14:50,058 copying skbio/test.py -> build/lib.linux-armv7l-3.9/skbio 2021-07-10T06:14:50,060 copying skbio/__init__.py -> build/lib.linux-armv7l-3.9/skbio 2021-07-10T06:14:50,062 copying skbio/workflow.py -> build/lib.linux-armv7l-3.9/skbio 2021-07-10T06:14:50,065 creating build/lib.linux-armv7l-3.9/skbio/draw 2021-07-10T06:14:50,066 copying skbio/draw/_distributions.py -> build/lib.linux-armv7l-3.9/skbio/draw 2021-07-10T06:14:50,069 copying skbio/draw/__init__.py -> build/lib.linux-armv7l-3.9/skbio/draw 2021-07-10T06:14:50,071 creating build/lib.linux-armv7l-3.9/skbio/tests 2021-07-10T06:14:50,072 copying skbio/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/tests 2021-07-10T06:14:50,074 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/tests 2021-07-10T06:14:50,075 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-3.9/skbio/tests 2021-07-10T06:14:50,079 creating build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,080 copying skbio/sequence/_dna.py -> build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,082 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,085 copying skbio/sequence/_base.py -> build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,087 copying skbio/sequence/_iupac_sequence.py -> build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,089 copying skbio/sequence/_protein.py -> build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,092 copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,094 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,096 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,100 copying skbio/sequence/_rna.py -> build/lib.linux-armv7l-3.9/skbio/sequence 2021-07-10T06:14:50,103 creating build/lib.linux-armv7l-3.9/skbio/stats 2021-07-10T06:14:50,104 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-3.9/skbio/stats 2021-07-10T06:14:50,106 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-3.9/skbio/stats 2021-07-10T06:14:50,109 copying skbio/stats/power.py -> build/lib.linux-armv7l-3.9/skbio/stats 2021-07-10T06:14:50,113 copying skbio/stats/spatial.py -> build/lib.linux-armv7l-3.9/skbio/stats 2021-07-10T06:14:50,115 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-3.9/skbio/stats 2021-07-10T06:14:50,117 copying skbio/stats/composition.py -> build/lib.linux-armv7l-3.9/skbio/stats 2021-07-10T06:14:50,119 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-3.9/skbio/stats 2021-07-10T06:14:50,122 creating build/lib.linux-armv7l-3.9/skbio/io 2021-07-10T06:14:50,123 copying skbio/io/registry.py -> build/lib.linux-armv7l-3.9/skbio/io 2021-07-10T06:14:50,128 copying skbio/io/_warning.py -> build/lib.linux-armv7l-3.9/skbio/io 2021-07-10T06:14:50,130 copying skbio/io/_exception.py -> build/lib.linux-armv7l-3.9/skbio/io 2021-07-10T06:14:50,131 copying skbio/io/_fileobject.py -> build/lib.linux-armv7l-3.9/skbio/io 2021-07-10T06:14:50,133 copying skbio/io/__init__.py -> build/lib.linux-armv7l-3.9/skbio/io 2021-07-10T06:14:50,135 copying skbio/io/_iosources.py -> build/lib.linux-armv7l-3.9/skbio/io 2021-07-10T06:14:50,137 copying skbio/io/util.py -> build/lib.linux-armv7l-3.9/skbio/io 2021-07-10T06:14:50,140 creating build/lib.linux-armv7l-3.9/skbio/util 2021-07-10T06:14:50,141 copying skbio/util/_decorator.py -> build/lib.linux-armv7l-3.9/skbio/util 2021-07-10T06:14:50,144 copying skbio/util/_warning.py -> build/lib.linux-armv7l-3.9/skbio/util 2021-07-10T06:14:50,146 copying skbio/util/_exception.py -> build/lib.linux-armv7l-3.9/skbio/util 2021-07-10T06:14:50,147 copying skbio/util/_testing.py -> build/lib.linux-armv7l-3.9/skbio/util 2021-07-10T06:14:50,149 copying skbio/util/__init__.py -> build/lib.linux-armv7l-3.9/skbio/util 2021-07-10T06:14:50,151 copying skbio/util/_misc.py -> build/lib.linux-armv7l-3.9/skbio/util 2021-07-10T06:14:50,154 creating build/lib.linux-armv7l-3.9/skbio/diversity 2021-07-10T06:14:50,155 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-3.9/skbio/diversity 2021-07-10T06:14:50,158 creating build/lib.linux-armv7l-3.9/skbio/tree 2021-07-10T06:14:50,159 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-3.9/skbio/tree 2021-07-10T06:14:50,161 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-3.9/skbio/tree 2021-07-10T06:14:50,165 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-3.9/skbio/tree 2021-07-10T06:14:50,167 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-3.9/skbio/tree 2021-07-10T06:14:50,169 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-3.9/skbio/tree 2021-07-10T06:14:50,172 copying skbio/tree/_trie.py -> build/lib.linux-armv7l-3.9/skbio/tree 2021-07-10T06:14:50,175 creating build/lib.linux-armv7l-3.9/skbio/alignment 2021-07-10T06:14:50,175 copying skbio/alignment/_exception.py -> build/lib.linux-armv7l-3.9/skbio/alignment 2021-07-10T06:14:50,177 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-3.9/skbio/alignment 2021-07-10T06:14:50,180 copying skbio/alignment/_alignment.py -> build/lib.linux-armv7l-3.9/skbio/alignment 2021-07-10T06:14:50,183 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-3.9/skbio/alignment 2021-07-10T06:14:50,187 creating build/lib.linux-armv7l-3.9/skbio/draw/tests 2021-07-10T06:14:50,187 copying skbio/draw/tests/test_distributions.py -> build/lib.linux-armv7l-3.9/skbio/draw/tests 2021-07-10T06:14:50,191 copying skbio/draw/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/draw/tests 2021-07-10T06:14:50,193 creating build/lib.linux-armv7l-3.9/skbio/sequence/tests 2021-07-10T06:14:50,194 copying skbio/sequence/tests/test_protein.py -> build/lib.linux-armv7l-3.9/skbio/sequence/tests 2021-07-10T06:14:50,196 copying skbio/sequence/tests/test_dna.py -> build/lib.linux-armv7l-3.9/skbio/sequence/tests 2021-07-10T06:14:50,198 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-3.9/skbio/sequence/tests 2021-07-10T06:14:50,201 copying skbio/sequence/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/sequence/tests 2021-07-10T06:14:50,203 copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-armv7l-3.9/skbio/sequence/tests 2021-07-10T06:14:50,206 copying skbio/sequence/tests/test_iupac_sequence.py -> build/lib.linux-armv7l-3.9/skbio/sequence/tests 2021-07-10T06:14:50,208 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/sequence/tests 2021-07-10T06:14:50,210 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-3.9/skbio/sequence/tests 2021-07-10T06:14:50,218 creating build/lib.linux-armv7l-3.9/skbio/stats/tests 2021-07-10T06:14:50,218 copying skbio/stats/tests/test_composition.py -> build/lib.linux-armv7l-3.9/skbio/stats/tests 2021-07-10T06:14:50,221 copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-3.9/skbio/stats/tests 2021-07-10T06:14:50,224 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-3.9/skbio/stats/tests 2021-07-10T06:14:50,226 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-3.9/skbio/stats/tests 2021-07-10T06:14:50,228 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/stats/tests 2021-07-10T06:14:50,230 copying skbio/stats/tests/test_spatial.py -> build/lib.linux-armv7l-3.9/skbio/stats/tests 2021-07-10T06:14:50,232 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-3.9/skbio/stats/tests 2021-07-10T06:14:50,236 creating build/lib.linux-armv7l-3.9/skbio/stats/ordination 2021-07-10T06:14:50,237 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-3.9/skbio/stats/ordination 2021-07-10T06:14:50,240 copying skbio/stats/ordination/_base.py -> build/lib.linux-armv7l-3.9/skbio/stats/ordination 2021-07-10T06:14:50,242 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-3.9/skbio/stats/ordination 2021-07-10T06:14:50,244 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-3.9/skbio/stats/ordination 2021-07-10T06:14:50,246 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-3.9/skbio/stats/ordination 2021-07-10T06:14:50,248 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-3.9/skbio/stats/ordination 2021-07-10T06:14:50,250 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-3.9/skbio/stats/ordination 2021-07-10T06:14:50,254 creating build/lib.linux-armv7l-3.9/skbio/stats/distance 2021-07-10T06:14:50,255 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance 2021-07-10T06:14:50,257 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance 2021-07-10T06:14:50,260 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance 2021-07-10T06:14:50,262 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance 2021-07-10T06:14:50,265 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance 2021-07-10T06:14:50,267 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance 2021-07-10T06:14:50,270 creating build/lib.linux-armv7l-3.9/skbio/stats/evolve 2021-07-10T06:14:50,271 copying skbio/stats/evolve/_hommola.py -> build/lib.linux-armv7l-3.9/skbio/stats/evolve 2021-07-10T06:14:50,274 copying skbio/stats/evolve/__init__.py -> build/lib.linux-armv7l-3.9/skbio/stats/evolve 2021-07-10T06:14:50,276 creating build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests 2021-07-10T06:14:50,277 copying skbio/stats/ordination/tests/test_ordination.py -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests 2021-07-10T06:14:50,280 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests 2021-07-10T06:14:50,283 creating build/lib.linux-armv7l-3.9/skbio/stats/distance/tests 2021-07-10T06:14:50,284 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests 2021-07-10T06:14:50,286 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests 2021-07-10T06:14:50,289 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests 2021-07-10T06:14:50,292 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests 2021-07-10T06:14:50,294 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests 2021-07-10T06:14:50,296 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests 2021-07-10T06:14:50,299 creating build/lib.linux-armv7l-3.9/skbio/stats/evolve/tests 2021-07-10T06:14:50,300 copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/stats/evolve/tests 2021-07-10T06:14:50,302 copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-armv7l-3.9/skbio/stats/evolve/tests 2021-07-10T06:14:50,306 creating build/lib.linux-armv7l-3.9/skbio/io/tests 2021-07-10T06:14:50,307 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-3.9/skbio/io/tests 2021-07-10T06:14:50,311 copying skbio/io/tests/test_iosources.py -> build/lib.linux-armv7l-3.9/skbio/io/tests 2021-07-10T06:14:50,313 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-3.9/skbio/io/tests 2021-07-10T06:14:50,316 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/io/tests 2021-07-10T06:14:50,319 creating build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,320 copying skbio/io/format/fastq.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,323 copying skbio/io/format/newick.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,326 copying skbio/io/format/qseq.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,330 copying skbio/io/format/fasta.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,334 copying skbio/io/format/_base.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,336 copying skbio/io/format/clustal.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,339 copying skbio/io/format/emptyfile.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,341 copying skbio/io/format/__init__.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,343 copying skbio/io/format/phylip.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,565 copying skbio/io/format/lsmat.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,569 copying skbio/io/format/ordination.py -> build/lib.linux-armv7l-3.9/skbio/io/format 2021-07-10T06:14:50,575 creating build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,576 copying skbio/io/format/tests/test_newick.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,580 copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,586 copying skbio/io/format/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,589 copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,592 copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,595 copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,597 copying skbio/io/format/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,598 copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,601 copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,604 copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,606 copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-armv7l-3.9/skbio/io/format/tests 2021-07-10T06:14:50,609 creating build/lib.linux-armv7l-3.9/skbio/util/tests 2021-07-10T06:14:50,610 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-3.9/skbio/util/tests 2021-07-10T06:14:50,612 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-3.9/skbio/util/tests 2021-07-10T06:14:50,614 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/util/tests 2021-07-10T06:14:50,616 copying skbio/util/tests/test_decorator.py -> build/lib.linux-armv7l-3.9/skbio/util/tests 2021-07-10T06:14:50,619 creating build/lib.linux-armv7l-3.9/skbio/diversity/beta 2021-07-10T06:14:50,620 copying skbio/diversity/beta/_base.py -> build/lib.linux-armv7l-3.9/skbio/diversity/beta 2021-07-10T06:14:50,622 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-3.9/skbio/diversity/beta 2021-07-10T06:14:50,626 creating build/lib.linux-armv7l-3.9/skbio/diversity/alpha 2021-07-10T06:14:50,626 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha 2021-07-10T06:14:50,630 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha 2021-07-10T06:14:50,632 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha 2021-07-10T06:14:50,635 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha 2021-07-10T06:14:50,637 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha 2021-07-10T06:14:50,639 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha 2021-07-10T06:14:50,642 creating build/lib.linux-armv7l-3.9/skbio/diversity/beta/tests 2021-07-10T06:14:50,642 copying skbio/diversity/beta/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/diversity/beta/tests 2021-07-10T06:14:50,645 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/diversity/beta/tests 2021-07-10T06:14:50,648 creating build/lib.linux-armv7l-3.9/skbio/diversity/alpha/tests 2021-07-10T06:14:50,648 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha/tests 2021-07-10T06:14:50,651 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha/tests 2021-07-10T06:14:50,653 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha/tests 2021-07-10T06:14:50,656 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha/tests 2021-07-10T06:14:50,658 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha/tests 2021-07-10T06:14:50,659 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-3.9/skbio/diversity/alpha/tests 2021-07-10T06:14:50,662 creating build/lib.linux-armv7l-3.9/skbio/tree/tests 2021-07-10T06:14:50,663 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-3.9/skbio/tree/tests 2021-07-10T06:14:50,665 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-3.9/skbio/tree/tests 2021-07-10T06:14:50,669 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/tree/tests 2021-07-10T06:14:50,671 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-3.9/skbio/tree/tests 2021-07-10T06:14:50,674 copying skbio/tree/tests/test_trie.py -> build/lib.linux-armv7l-3.9/skbio/tree/tests 2021-07-10T06:14:50,677 creating build/lib.linux-armv7l-3.9/skbio/alignment/tests 2021-07-10T06:14:50,678 copying skbio/alignment/tests/test_ssw.py -> build/lib.linux-armv7l-3.9/skbio/alignment/tests 2021-07-10T06:14:50,682 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-3.9/skbio/alignment/tests 2021-07-10T06:14:50,684 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-3.9/skbio/alignment/tests 2021-07-10T06:14:50,687 copying skbio/alignment/tests/test_alignment.py -> build/lib.linux-armv7l-3.9/skbio/alignment/tests 2021-07-10T06:14:50,693 creating build/lib.linux-armv7l-3.9/skbio/alignment/_lib 2021-07-10T06:14:50,693 copying skbio/alignment/_lib/__init__.py -> build/lib.linux-armv7l-3.9/skbio/alignment/_lib 2021-07-10T06:14:50,730 creating build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,731 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,733 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,736 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,738 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,740 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,742 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,744 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,746 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,749 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,751 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,753 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,755 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-3.9/skbio/stats/tests/data 2021-07-10T06:14:50,757 creating build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,758 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,760 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,763 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,779 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,782 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,785 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,788 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,791 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,794 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,797 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,800 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,802 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,805 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,807 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,809 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,812 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,814 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,817 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-3.9/skbio/stats/ordination/tests/data 2021-07-10T06:14:50,819 creating build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,820 copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,822 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,825 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,827 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,830 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,832 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,834 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,836 copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,839 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,841 copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,843 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,845 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,847 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,849 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,851 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,853 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,856 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,858 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,860 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,862 copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,865 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,867 copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-armv7l-3.9/skbio/stats/distance/tests/data 2021-07-10T06:14:50,869 creating build/lib.linux-armv7l-3.9/skbio/io/tests/data 2021-07-10T06:14:50,870 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-3.9/skbio/io/tests/data 2021-07-10T06:14:50,873 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-3.9/skbio/io/tests/data 2021-07-10T06:14:50,875 copying skbio/io/tests/data/example_file -> build/lib.linux-armv7l-3.9/skbio/io/tests/data 2021-07-10T06:14:50,877 copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-armv7l-3.9/skbio/io/tests/data 2021-07-10T06:14:50,879 copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-armv7l-3.9/skbio/io/tests/data 2021-07-10T06:14:50,881 copying skbio/io/tests/data/big5_file -> build/lib.linux-armv7l-3.9/skbio/io/tests/data 2021-07-10T06:14:50,883 copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-armv7l-3.9/skbio/io/tests/data 2021-07-10T06:14:50,885 copying skbio/io/tests/data/example_file.gz -> build/lib.linux-armv7l-3.9/skbio/io/tests/data 2021-07-10T06:14:50,887 creating build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,888 copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,890 copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,892 copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,895 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,897 copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,899 copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,901 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,903 copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,905 copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,908 copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,910 copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,912 copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,915 copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,917 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,919 copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,921 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,923 copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,926 copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,928 copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,930 copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,932 copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,934 copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,936 copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,938 copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,940 copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,943 copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,946 copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,948 copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,950 copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,953 copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,955 copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,957 copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,959 copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,962 copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,964 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,967 copying skbio/io/format/tests/data/empty -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,969 copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,972 copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,974 copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,978 copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,980 copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,983 copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,985 copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,988 copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,991 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,993 copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,996 copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:50,999 copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,002 copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,004 copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,006 copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,009 copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,011 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,013 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,016 copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,018 copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,020 copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,023 copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,025 copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,027 copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,029 copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,032 copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,034 copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,036 copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,038 copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,041 copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,043 copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,045 copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,047 copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,049 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,052 copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,054 copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,056 copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,058 copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,060 copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,062 copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,065 copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,067 copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,069 copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,071 copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,073 copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,075 copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,077 copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,079 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,081 copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,083 copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,085 copying skbio/io/format/tests/data/qual_sequence_collection_different_type -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,087 copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,090 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,092 copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,094 copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,096 copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,098 copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,101 copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,103 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,105 copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,107 copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,109 copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,111 copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,113 copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,115 copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,118 copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,120 copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,122 copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,124 copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,126 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,128 copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,130 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,133 copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,135 copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,138 copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,140 copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,142 copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,144 copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,146 copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,148 copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,150 copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,152 copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,155 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,157 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,159 copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,161 copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,163 copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,165 copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,168 copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,170 copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,172 copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,174 copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,176 copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,178 copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,180 copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,183 copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,185 copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,187 copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,189 copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,191 copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,193 copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,196 copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,198 copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,200 copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,202 copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,204 copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,206 copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,208 copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,210 copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,213 copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,215 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,217 copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,219 copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,221 copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,223 copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,225 copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,227 copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,229 copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,232 copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,234 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,236 copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,238 copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,240 copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,242 copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,244 copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,246 copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,249 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,251 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,253 copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,255 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,257 copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,259 copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,262 copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,264 copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,266 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,268 copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,271 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,273 copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,276 copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,278 copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,280 copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,282 copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,284 copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,286 copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,289 copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,291 copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,293 copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,295 copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,297 copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,299 copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,301 copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,303 copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,306 copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,308 copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,310 copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,312 copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,314 copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,316 copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,318 copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,320 copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,322 copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,324 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,326 copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,328 copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,331 copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,333 copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,335 copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,337 copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,340 copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,342 copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,344 copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,346 copying skbio/io/format/tests/data/fasta_sequence_collection_different_type -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,348 copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,350 copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,353 copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,355 copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,357 copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,359 copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,361 copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,363 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,365 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,367 copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-armv7l-3.9/skbio/io/format/tests/data 2021-07-10T06:14:51,389 running build_ext 2021-07-10T06:14:51,661 building 'skbio.stats.__subsample' extension 2021-07-10T06:14:51,662 creating build/temp.linux-armv7l-3.9 2021-07-10T06:14:51,662 creating build/temp.linux-armv7l-3.9/skbio 2021-07-10T06:14:51,663 creating build/temp.linux-armv7l-3.9/skbio/stats 2021-07-10T06:14:51,663 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c skbio/stats/__subsample.c -o build/temp.linux-armv7l-3.9/skbio/stats/__subsample.o 2021-07-10T06:14:52,078 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T06:14:52,079 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T06:14:52,079 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T06:14:52,079 from skbio/stats/__subsample.c:258: 2021-07-10T06:14:52,079 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T06:14:52,079 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T06:14:52,080 | ^~~~~~~ 2021-07-10T06:14:52,166 skbio/stats/__subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T06:14:52,168 skbio/stats/__subsample.c:4133:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,168 4133 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,168 | ^ 2021-07-10T06:14:52,168 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,168 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,169 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,169 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T06:14:52,169 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T06:14:52,169 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,171 skbio/stats/__subsample.c:4133:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,171 4133 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,171 | ^ 2021-07-10T06:14:52,171 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,171 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,171 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,171 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T06:14:52,172 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T06:14:52,172 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,173 skbio/stats/__subsample.c:4133:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,173 4133 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,173 | ^ 2021-07-10T06:14:52,173 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,173 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,174 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,174 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T06:14:52,174 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T06:14:52,174 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,175 skbio/stats/__subsample.c:4133:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,175 4133 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,176 | ^ 2021-07-10T06:14:52,176 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,176 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,176 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,176 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T06:14:52,176 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T06:14:52,176 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,178 skbio/stats/__subsample.c:4133:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,178 4133 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,178 | ^ 2021-07-10T06:14:52,178 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,178 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,178 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,178 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T06:14:52,178 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T06:14:52,178 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,180 skbio/stats/__subsample.c:4133:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,180 4133 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,180 | ^ 2021-07-10T06:14:52,180 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,180 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,181 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,181 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T06:14:52,181 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T06:14:52,181 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,183 skbio/stats/__subsample.c:4149:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,183 4149 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,183 | ^ 2021-07-10T06:14:52,183 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,184 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,184 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,184 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T06:14:52,184 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T06:14:52,184 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,185 skbio/stats/__subsample.c:4149:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,185 4149 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,186 | ^ 2021-07-10T06:14:52,186 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,186 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,186 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,186 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T06:14:52,186 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T06:14:52,186 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,188 skbio/stats/__subsample.c:4149:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,188 4149 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,188 | ^ 2021-07-10T06:14:52,188 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,188 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,188 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,188 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T06:14:52,188 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T06:14:52,189 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,190 skbio/stats/__subsample.c:4149:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,190 4149 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,190 | ^ 2021-07-10T06:14:52,190 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,190 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,191 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,191 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T06:14:52,191 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T06:14:52,191 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,192 skbio/stats/__subsample.c:4149:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,192 4149 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,193 | ^ 2021-07-10T06:14:52,193 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,193 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,193 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,193 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T06:14:52,193 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T06:14:52,193 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,195 skbio/stats/__subsample.c:4149:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T06:14:52,195 4149 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T06:14:52,195 | ^ 2021-07-10T06:14:52,195 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T06:14:52,195 from /usr/include/python3.9/Python.h:97, 2021-07-10T06:14:52,195 from skbio/stats/__subsample.c:24: 2021-07-10T06:14:52,195 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T06:14:52,195 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T06:14:52,196 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T06:14:52,311 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T06:14:52,311 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T06:14:52,311 from skbio/stats/__subsample.c:258: 2021-07-10T06:14:52,312 At top level: 2021-07-10T06:14:52,312 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T06:14:52,312 1464 | _import_array(void) 2021-07-10T06:14:52,312 | ^~~~~~~~~~~~~ 2021-07-10T06:14:54,298 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/skbio/stats/__subsample.o -o build/lib.linux-armv7l-3.9/skbio/stats/__subsample.cpython-39-arm-linux-gnueabihf.so 2021-07-10T06:14:54,420 building 'skbio.alignment._ssw_wrapper' extension 2021-07-10T06:14:54,420 creating build/temp.linux-armv7l-3.9/skbio/alignment 2021-07-10T06:14:54,421 creating build/temp.linux-armv7l-3.9/skbio/alignment/_lib 2021-07-10T06:14:54,421 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -c skbio/alignment/_lib/ssw.c -o build/temp.linux-armv7l-3.9/skbio/alignment/_lib/ssw.o -Wno-error=declaration-after-statement 2021-07-10T06:14:54,477 skbio/alignment/_lib/ssw.c:38:10: fatal error: emmintrin.h: No such file or directory 2021-07-10T06:14:54,477 38 | #include 2021-07-10T06:14:54,477 | ^~~~~~~~~~~~~ 2021-07-10T06:14:54,477 compilation terminated. 2021-07-10T06:14:54,480 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T06:14:54,599 Building wheel for scikit-bio (setup.py): finished with status 'error' 2021-07-10T06:14:54,599 ERROR: Failed building wheel for scikit-bio 2021-07-10T06:14:54,600 Running setup.py clean for scikit-bio 2021-07-10T06:14:54,601 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mn2fq6w_/scikit-bio_edf09672aaf14c6da6ed8435b5c9e218/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mn2fq6w_/scikit-bio_edf09672aaf14c6da6ed8435b5c9e218/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T06:14:55,604 running clean 2021-07-10T06:14:55,606 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T06:14:55,610 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T06:14:55,763 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T06:14:55,763 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T06:14:55,763 removing 'build' 2021-07-10T06:14:55,833 Failed to build scikit-bio 2021-07-10T06:14:55,833 ERROR: Failed to build one or more wheels 2021-07-10T06:14:55,834 Exception information: 2021-07-10T06:14:55,834 Traceback (most recent call last): 2021-07-10T06:14:55,834 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T06:14:55,834 status = self.run(options, args) 2021-07-10T06:14:55,834 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T06:14:55,834 return func(self, options, args) 2021-07-10T06:14:55,834 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T06:14:55,834 raise CommandError( 2021-07-10T06:14:55,834 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T06:14:55,837 Removed build tracker: '/tmp/pip-req-tracker-8eg63920'