2021-07-10T06:42:37,099 Created temporary directory: /tmp/pip-ephem-wheel-cache-r7lg3mx5
2021-07-10T06:42:37,102 Created temporary directory: /tmp/pip-req-tracker-ue42mkrd
2021-07-10T06:42:37,102 Initialized build tracking at /tmp/pip-req-tracker-ue42mkrd
2021-07-10T06:42:37,102 Created build tracker: /tmp/pip-req-tracker-ue42mkrd
2021-07-10T06:42:37,102 Entered build tracker: /tmp/pip-req-tracker-ue42mkrd
2021-07-10T06:42:37,103 Created temporary directory: /tmp/pip-wheel-2lafeia1
2021-07-10T06:42:37,135 1 location(s) to search for versions of msmtools:
2021-07-10T06:42:37,135 * https://pypi.org/simple/msmtools/
2021-07-10T06:42:37,135 Fetching project page and analyzing links: https://pypi.org/simple/msmtools/
2021-07-10T06:42:37,136 Getting page https://pypi.org/simple/msmtools/
2021-07-10T06:42:37,137 Found index url https://pypi.org/simple
2021-07-10T06:42:37,232   Found link https://files.pythonhosted.org/packages/06/eb/7ea49c965c6d6cc5d49cf7619eb365b9f80f92d449fa2d83286d57c23b09/msmtools-1.0.tar.gz#sha256=cd2cfbb47327eb24d4855b7585868fbbc3be14c824a2eaa3fa0c2a7e76310595 (from https://pypi.org/simple/msmtools/), version: 1.0
2021-07-10T06:42:37,232   Found link https://files.pythonhosted.org/packages/c4/ca/50da8c42c7aad77f9d8f5c5cf1aa0f8812c01b78ea07c4719daca73a90fb/msmtools-1.0.1.tar.gz#sha256=b6704dea0bb816e3aca0be871f15199a18964a799854a000135ffe95a13ea0d6 (from https://pypi.org/simple/msmtools/), version: 1.0.1
2021-07-10T06:42:37,232   Found link https://files.pythonhosted.org/packages/f7/e7/8fad6dccdaf5c35379a3d670c5b17546fcf5e9b2c7feec293dec0e9fc935/msmtools-1.0.2.tar.gz#sha256=f5f9cb4a2b10f7d7f2d5b7cf520703011e6d6f7961a858c5a88b82f0ad2c494a (from https://pypi.org/simple/msmtools/), version: 1.0.2
2021-07-10T06:42:37,233   Found link https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 (from https://pypi.org/simple/msmtools/), version: 1.0.3
2021-07-10T06:42:37,233   Found link https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 (from https://pypi.org/simple/msmtools/), version: 1.0.4
2021-07-10T06:42:37,233   Found link https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 (from https://pypi.org/simple/msmtools/), version: 1.1
2021-07-10T06:42:37,234   Found link https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b (from https://pypi.org/simple/msmtools/), version: 1.1.1
2021-07-10T06:42:37,234   Found link https://files.pythonhosted.org/packages/d8/83/2de718bea8c6ffd64287549e1f443695c9c7eae576e4ec8b695748735bcc/msmtools-1.1.2.tar.gz#sha256=1ae40e839dff551575e38bb8c061073a2f1e69279e53ed62f66c88006a1f0a4f (from https://pypi.org/simple/msmtools/), version: 1.1.2
2021-07-10T06:42:37,234   Found link https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b (from https://pypi.org/simple/msmtools/), version: 1.1.3
2021-07-10T06:42:37,235   Found link https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 (from https://pypi.org/simple/msmtools/), version: 1.1.4
2021-07-10T06:42:37,235   Found link https://files.pythonhosted.org/packages/5e/a2/42d30177e9f8b9071a5cf17c6cd0a75b9b245d708fc626b015599308a898/msmtools-1.2.tar.gz#sha256=eb509f9b2bebd5a07896ec563b14df3ebee2b9871730f5ac87e1ab3179c8c6c4 (from https://pypi.org/simple/msmtools/), version: 1.2
2021-07-10T06:42:37,235   Found link https://files.pythonhosted.org/packages/c5/bb/79aa3617eed8eaea3c2639d172929079b680e1904d4e19b50d35612c5db3/msmtools-1.2.1.tar.gz#sha256=7282cec96360372e8440146dfe27848273bc3d83d18806ea56e3986a14d5bdec (from https://pypi.org/simple/msmtools/), version: 1.2.1
2021-07-10T06:42:37,235   Found link https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 (from https://pypi.org/simple/msmtools/), version: 1.2.2
2021-07-10T06:42:37,236   Found link https://files.pythonhosted.org/packages/53/84/416bd9c21c408ef59953804c1b4ec805950adfd89102c43c54685b6f3cdf/msmtools-1.2.3.tar.gz#sha256=3f3c39a4558887575dd2bfdb0711b6d073446cb0b8767eafda16bfe0b92409c9 (from https://pypi.org/simple/msmtools/), version: 1.2.3
2021-07-10T06:42:37,236   Found link https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b (from https://pypi.org/simple/msmtools/), version: 1.2.4
2021-07-10T06:42:37,236   Found link https://files.pythonhosted.org/packages/9e/95/ac5dfa19f13379490dbef764a994c6d564b32de2d68e712042af8ff84d2a/msmtools-1.2.5.tar.gz#sha256=e07b73ad9e4e8ef8aca82e6b5bb55f57f8400a65fb2fd656b521f72237a7310a (from https://pypi.org/simple/msmtools/), version: 1.2.5
2021-07-10T06:42:37,237   Found link https://files.pythonhosted.org/packages/e4/1f/366f5c37c1231f87b6789f904e4e68ae47b4b910119da9ec5905e9fa1387/msmtools-1.2.6.tar.gz#sha256=2bfa6c02fff9ed9433c90d7ddc7860a8e2cf881fc67ec1ea5ef93f34a7e03541 (from https://pypi.org/simple/msmtools/), version: 1.2.6
2021-07-10T06:42:37,237 Skipping link: not a file: https://pypi.org/simple/msmtools/
2021-07-10T06:42:37,256 Given no hashes to check 1 links for project 'msmtools': discarding no candidates
2021-07-10T06:42:37,275 Collecting msmtools==1.0.3
2021-07-10T06:42:37,276   Created temporary directory: /tmp/pip-unpack-s0y26bjv
2021-07-10T06:42:37,621   Downloading msmtools-1.0.3.tar.gz (577 kB)
2021-07-10T06:42:38,216   Added msmtools==1.0.3 from https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 to build tracker '/tmp/pip-req-tracker-ue42mkrd'
2021-07-10T06:42:38,218     Running setup.py (path:/tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/setup.py) egg_info for package msmtools
2021-07-10T06:42:38,218     Created temporary directory: /tmp/pip-pip-egg-info-1yb3o3yg
2021-07-10T06:42:38,219     Running command python setup.py egg_info
2021-07-10T06:42:39,079     running egg_info
2021-07-10T06:42:39,081     creating /tmp/pip-pip-egg-info-1yb3o3yg/msmtools.egg-info
2021-07-10T06:42:39,082     writing /tmp/pip-pip-egg-info-1yb3o3yg/msmtools.egg-info/PKG-INFO
2021-07-10T06:42:39,084     writing dependency_links to /tmp/pip-pip-egg-info-1yb3o3yg/msmtools.egg-info/dependency_links.txt
2021-07-10T06:42:39,086     writing requirements to /tmp/pip-pip-egg-info-1yb3o3yg/msmtools.egg-info/requires.txt
2021-07-10T06:42:39,283     creating /tmp/hasfunction-qml5tkt7/tmp
2021-07-10T06:42:39,284     creating /tmp/hasfunction-qml5tkt7/tmp/hasfunction-qml5tkt7
2021-07-10T06:42:39,284     cc -c /tmp/hasfunction-qml5tkt7/funcname.c -o /tmp/hasfunction-qml5tkt7/tmp/hasfunction-qml5tkt7/funcname.o
2021-07-10T06:42:39,369     cc /tmp/hasfunction-qml5tkt7/tmp/hasfunction-qml5tkt7/funcname.o -o /tmp/hasfunction-qml5tkt7/a.out
2021-07-10T06:42:39,561     creating /tmp/hasfunction-cb5ap4wn/tmp
2021-07-10T06:42:39,561     creating /tmp/hasfunction-cb5ap4wn/tmp/hasfunction-cb5ap4wn
2021-07-10T06:42:39,562     cc -c /tmp/hasfunction-cb5ap4wn/funcname.c -o /tmp/hasfunction-cb5ap4wn/tmp/hasfunction-cb5ap4wn/funcname.o
2021-07-10T06:42:39,646     cc /tmp/hasfunction-cb5ap4wn/tmp/hasfunction-cb5ap4wn/funcname.o -lgomp -o /tmp/hasfunction-cb5ap4wn/a.out
2021-07-10T06:42:40,466     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/msmtools/estimation/dense/mle_trev_given_pi.pyx
2021-07-10T06:42:40,466       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T06:42:41,852     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/msmtools/estimation/dense/sampler_rev.pyx
2021-07-10T06:42:41,852       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T06:42:43,527     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/msmtools/estimation/dense/sampler_revpi.pyx
2021-07-10T06:42:43,527       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T06:42:45,231     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/msmtools/estimation/sparse/mle_trev.pyx
2021-07-10T06:42:45,231       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T06:42:46,665     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/msmtools/estimation/sparse/mle_trev_given_pi.pyx
2021-07-10T06:42:46,665       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T06:42:48,025     Compiling msmtools/estimation/dense/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T06:42:48,026     Compiling msmtools/estimation/sparse/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T06:42:48,026     Compiling msmtools/estimation/sparse/mle_trev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T06:42:48,026     Compiling msmtools/estimation/dense/sampler_rev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T06:42:48,026     Compiling msmtools/estimation/dense/sampler_revpi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T06:42:48,026     [1/5] Cythonizing msmtools/estimation/dense/mle_trev_given_pi.pyx
2021-07-10T06:42:48,026     [2/5] Cythonizing msmtools/estimation/dense/sampler_rev.pyx
2021-07-10T06:42:48,026     [3/5] Cythonizing msmtools/estimation/dense/sampler_revpi.pyx
2021-07-10T06:42:48,027     [4/5] Cythonizing msmtools/estimation/sparse/mle_trev.pyx
2021-07-10T06:42:48,027     [5/5] Cythonizing msmtools/estimation/sparse/mle_trev_given_pi.pyx
2021-07-10T06:42:48,027     /tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/setup.py:159: UserWarning: enabled openmp
2021-07-10T06:42:48,027       warnings.warn('enabled openmp')
2021-07-10T06:42:48,027     writing top-level names to /tmp/pip-pip-egg-info-1yb3o3yg/msmtools.egg-info/top_level.txt
2021-07-10T06:42:48,028     writing manifest file '/tmp/pip-pip-egg-info-1yb3o3yg/msmtools.egg-info/SOURCES.txt'
2021-07-10T06:42:48,340     reading manifest file '/tmp/pip-pip-egg-info-1yb3o3yg/msmtools.egg-info/SOURCES.txt'
2021-07-10T06:42:48,342     reading manifest template 'MANIFEST.in'
2021-07-10T06:42:48,422     warning: no files found matching 'tests/data/*' under directory 'msmtools'
2021-07-10T06:42:48,461     warning: no files found matching 'testfiles/' under directory 'msmtools'
2021-07-10T06:42:48,655     adding license file 'LICENSE.txt'
2021-07-10T06:42:48,663     writing manifest file '/tmp/pip-pip-egg-info-1yb3o3yg/msmtools.egg-info/SOURCES.txt'
2021-07-10T06:42:48,891   Source in /tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1 has version 1.0.3, which satisfies requirement msmtools==1.0.3 from https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710
2021-07-10T06:42:48,892   Removed msmtools==1.0.3 from https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 from build tracker '/tmp/pip-req-tracker-ue42mkrd'
2021-07-10T06:42:48,896 Created temporary directory: /tmp/pip-unpack-44h3nhmv
2021-07-10T06:42:48,897 Building wheels for collected packages: msmtools
2021-07-10T06:42:48,901   Created temporary directory: /tmp/pip-wheel-0cllmfdx
2021-07-10T06:42:48,901   Building wheel for msmtools (setup.py): started
2021-07-10T06:42:48,902   Destination directory: /tmp/pip-wheel-0cllmfdx
2021-07-10T06:42:48,902   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0cllmfdx
2021-07-10T06:42:49,823   running bdist_wheel
2021-07-10T06:42:50,013   creating /tmp/hasfunction-xezfioj9/tmp
2021-07-10T06:42:50,014   creating /tmp/hasfunction-xezfioj9/tmp/hasfunction-xezfioj9
2021-07-10T06:42:50,014   cc -c /tmp/hasfunction-xezfioj9/funcname.c -o /tmp/hasfunction-xezfioj9/tmp/hasfunction-xezfioj9/funcname.o
2021-07-10T06:42:50,097   cc /tmp/hasfunction-xezfioj9/tmp/hasfunction-xezfioj9/funcname.o -o /tmp/hasfunction-xezfioj9/a.out
2021-07-10T06:42:50,211   creating /tmp/hasfunction-upprc0fp/tmp
2021-07-10T06:42:50,211   creating /tmp/hasfunction-upprc0fp/tmp/hasfunction-upprc0fp
2021-07-10T06:42:50,212   cc -c /tmp/hasfunction-upprc0fp/funcname.c -o /tmp/hasfunction-upprc0fp/tmp/hasfunction-upprc0fp/funcname.o
2021-07-10T06:42:50,297   cc /tmp/hasfunction-upprc0fp/tmp/hasfunction-upprc0fp/funcname.o -lgomp -o /tmp/hasfunction-upprc0fp/a.out
2021-07-10T06:42:50,938   /tmp/pip-wheel-2lafeia1/msmtools_11ddafa188204929a1eee64006c58db1/setup.py:159: UserWarning: enabled openmp
2021-07-10T06:42:50,938     warnings.warn('enabled openmp')
2021-07-10T06:42:51,217   running build
2021-07-10T06:42:51,217   running build_py
2021-07-10T06:42:51,223   creating build
2021-07-10T06:42:51,224   creating build/lib.linux-armv7l-3.9
2021-07-10T06:42:51,224   creating build/lib.linux-armv7l-3.9/msmtools
2021-07-10T06:42:51,225   copying msmtools/__init__.py -> build/lib.linux-armv7l-3.9/msmtools
2021-07-10T06:42:51,228   copying msmtools/_version.py -> build/lib.linux-armv7l-3.9/msmtools
2021-07-10T06:42:51,230   creating build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T06:42:51,230   copying msmtools/flux/reactive_flux_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T06:42:51,233   copying msmtools/flux/reactive_flux.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T06:42:51,235   copying msmtools/flux/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T06:42:51,237   copying msmtools/flux/api.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T06:42:51,241   creating build/lib.linux-armv7l-3.9/msmtools/analysis
2021-07-10T06:42:51,241   copying msmtools/analysis/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis
2021-07-10T06:42:51,244   copying msmtools/analysis/api.py -> build/lib.linux-armv7l-3.9/msmtools/analysis
2021-07-10T06:42:51,248   creating build/lib.linux-armv7l-3.9/msmtools/estimation
2021-07-10T06:42:51,249   copying msmtools/estimation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation
2021-07-10T06:42:51,251   copying msmtools/estimation/api.py -> build/lib.linux-armv7l-3.9/msmtools/estimation
2021-07-10T06:42:51,256   creating build/lib.linux-armv7l-3.9/msmtools/generation
2021-07-10T06:42:51,257   copying msmtools/generation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation
2021-07-10T06:42:51,259   copying msmtools/generation/api.py -> build/lib.linux-armv7l-3.9/msmtools/generation
2021-07-10T06:42:51,262   creating build/lib.linux-armv7l-3.9/msmtools/dtraj
2021-07-10T06:42:51,263   copying msmtools/dtraj/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj
2021-07-10T06:42:51,265   copying msmtools/dtraj/api.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj
2021-07-10T06:42:51,269   creating build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T06:42:51,270   copying msmtools/util/numeric.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T06:42:51,272   copying msmtools/util/exceptions.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T06:42:51,274   copying msmtools/util/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T06:42:51,276   copying msmtools/util/annotators.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T06:42:51,278   copying msmtools/util/statistics.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T06:42:51,281   copying msmtools/util/types.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T06:42:51,285   creating build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T06:42:51,286   copying msmtools/flux/sparse/pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T06:42:51,288   copying msmtools/flux/sparse/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T06:42:51,291   copying msmtools/flux/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T06:42:51,293   copying msmtools/flux/sparse/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T06:42:51,296   creating build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T06:42:51,297   copying msmtools/flux/dense/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T06:42:51,300   copying msmtools/flux/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T06:42:51,302   copying msmtools/flux/dense/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T06:42:51,306   creating build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,307   copying msmtools/analysis/sparse/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,310   copying msmtools/analysis/sparse/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,312   copying msmtools/analysis/sparse/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,314   copying msmtools/analysis/sparse/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,317   copying msmtools/analysis/sparse/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,319   copying msmtools/analysis/sparse/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,322   copying msmtools/analysis/sparse/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,324   copying msmtools/analysis/sparse/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,326   copying msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,329   copying msmtools/analysis/sparse/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,331   copying msmtools/analysis/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,333   copying msmtools/analysis/sparse/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,336   copying msmtools/analysis/sparse/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,339   copying msmtools/analysis/sparse/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,341   copying msmtools/analysis/sparse/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,344   copying msmtools/analysis/sparse/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T06:42:51,348   creating build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,349   copying msmtools/analysis/dense/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,352   copying msmtools/analysis/dense/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,354   copying msmtools/analysis/dense/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,357   copying msmtools/analysis/dense/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,359   copying msmtools/analysis/dense/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,362   copying msmtools/analysis/dense/correlations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,364   copying msmtools/analysis/dense/hitting_probability_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,366   copying msmtools/analysis/dense/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,369   copying msmtools/analysis/dense/correlations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,371   copying msmtools/analysis/dense/hitting_probability.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,373   copying msmtools/analysis/dense/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,375   copying msmtools/analysis/dense/sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,378   copying msmtools/analysis/dense/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,381   copying msmtools/analysis/dense/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,383   copying msmtools/analysis/dense/pcca_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,386   copying msmtools/analysis/dense/pcca.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,389   copying msmtools/analysis/dense/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,391   copying msmtools/analysis/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,393   copying msmtools/analysis/dense/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,396   copying msmtools/analysis/dense/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,398   copying msmtools/analysis/dense/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,400   copying msmtools/analysis/dense/sensitivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,403   copying msmtools/analysis/dense/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,405   copying msmtools/analysis/dense/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T06:42:51,409   creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,410   copying msmtools/estimation/sparse/connectivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,413   copying msmtools/estimation/sparse/likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,415   copying msmtools/estimation/sparse/count_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,418   copying msmtools/estimation/sparse/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,420   copying msmtools/estimation/sparse/prior_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,422   copying msmtools/estimation/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,424   copying msmtools/estimation/sparse/effective_counts.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,426   copying msmtools/estimation/sparse/prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,428   copying msmtools/estimation/sparse/transition_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,430   copying msmtools/estimation/sparse/count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,433   copying msmtools/estimation/sparse/connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,435   copying msmtools/estimation/sparse/likelihood_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:51,438   creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,439   copying msmtools/estimation/dense/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,442   copying msmtools/estimation/dense/tmatrix_sampler.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,444   copying msmtools/estimation/dense/sampler_nrev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,446   copying msmtools/estimation/dense/covariance.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,449   copying msmtools/estimation/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,450   copying msmtools/estimation/dense/bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,453   copying msmtools/estimation/dense/tmatrix_sampler_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,455   copying msmtools/estimation/dense/covariance_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,458   creating build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T06:42:51,459   copying msmtools/util/matrix/matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T06:42:51,462   copying msmtools/util/matrix/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T06:42:51,464   copying msmtools/util/matrix/matrix.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T06:42:51,478   running build_ext
2021-07-10T06:42:51,482   building 'msmtools.estimation.dense.mle_trev_given_pi' extension
2021-07-10T06:42:51,483   creating build/temp.linux-armv7l-3.9
2021-07-10T06:42:51,483   creating build/temp.linux-armv7l-3.9/msmtools
2021-07-10T06:42:51,484   creating build/temp.linux-armv7l-3.9/msmtools/estimation
2021-07-10T06:42:51,485   creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T06:42:51,486   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o -fopenmp
2021-07-10T06:42:51,887   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -fopenmp
2021-07-10T06:42:52,295   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T06:42:52,296                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T06:42:52,296                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T06:42:52,296                    from msmtools/estimation/dense/mle_trev_given_pi.c:632:
2021-07-10T06:42:52,296   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T06:42:52,296      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T06:42:52,297         |  ^~~~~~~
2021-07-10T06:42:55,265   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T06:42:55,401   building 'msmtools.estimation.sparse.mle_trev_given_pi' extension
2021-07-10T06:42:55,401   creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T06:42:55,402   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o -fopenmp
2021-07-10T06:42:55,761   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -fopenmp
2021-07-10T06:42:56,173   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T06:42:56,173                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T06:42:56,174                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T06:42:56,174                    from msmtools/estimation/sparse/mle_trev_given_pi.c:633:
2021-07-10T06:42:56,174   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T06:42:56,174      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T06:42:56,174         |  ^~~~~~~
2021-07-10T06:43:00,416   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T06:43:00,552   building 'msmtools.estimation.sparse.mle_trev' extension
2021-07-10T06:43:00,553   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o -fopenmp
2021-07-10T06:43:00,887   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -fopenmp
2021-07-10T06:43:01,269   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T06:43:01,269                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T06:43:01,269                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T06:43:01,270                    from msmtools/estimation/sparse/mle_trev.c:632:
2021-07-10T06:43:01,270   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T06:43:01,270      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T06:43:01,270         |  ^~~~~~~
2021-07-10T06:43:04,932   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T06:43:05,067   building 'msmtools.estimation.dense.sampler_rev' extension
2021-07-10T06:43:05,068   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp
2021-07-10T06:43:05,226   msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’:
2021-07-10T06:43:05,226   msmtools/estimation/dense/_ranlib.c:1549:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
2021-07-10T06:43:05,226    1549 |   int m;
2021-07-10T06:43:05,226         |       ^
2021-07-10T06:43:06,687   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp
2021-07-10T06:43:06,800   msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’:
2021-07-10T06:43:06,800   msmtools/estimation/dense/_rnglib.c:449:7: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T06:43:06,801     449 |   int j;
2021-07-10T06:43:06,801         |       ^
2021-07-10T06:43:06,807   msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’:
2021-07-10T06:43:06,808   msmtools/estimation/dense/_rnglib.c:1610:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T06:43:06,808    1610 |   int i;
2021-07-10T06:43:06,808         |       ^
2021-07-10T06:43:06,808   msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’:
2021-07-10T06:43:06,809   msmtools/estimation/dense/_rnglib.c:1709:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T06:43:06,809    1709 |   int i;
2021-07-10T06:43:06,809         |       ^
2021-07-10T06:43:07,323   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o -fopenmp
2021-07-10T06:43:07,922   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -fopenmp
2021-07-10T06:43:08,298   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T06:43:08,299                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T06:43:08,299                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T06:43:08,299                    from msmtools/estimation/dense/sampler_rev.c:634:
2021-07-10T06:43:08,299   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T06:43:08,299      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T06:43:08,300         |  ^~~~~~~
2021-07-10T06:43:16,365   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T06:43:16,527   building 'msmtools.estimation.dense.sampler_revpi' extension
2021-07-10T06:43:16,528   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp
2021-07-10T06:43:16,685   msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’:
2021-07-10T06:43:16,685   msmtools/estimation/dense/_ranlib.c:1549:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
2021-07-10T06:43:16,686    1549 |   int m;
2021-07-10T06:43:16,686         |       ^
2021-07-10T06:43:18,149   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp
2021-07-10T06:43:18,262   msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’:
2021-07-10T06:43:18,263   msmtools/estimation/dense/_rnglib.c:449:7: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T06:43:18,263     449 |   int j;
2021-07-10T06:43:18,263         |       ^
2021-07-10T06:43:18,270   msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’:
2021-07-10T06:43:18,271   msmtools/estimation/dense/_rnglib.c:1610:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T06:43:18,271    1610 |   int i;
2021-07-10T06:43:18,271         |       ^
2021-07-10T06:43:18,271   msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’:
2021-07-10T06:43:18,272   msmtools/estimation/dense/_rnglib.c:1709:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T06:43:18,272    1709 |   int i;
2021-07-10T06:43:18,272         |       ^
2021-07-10T06:43:18,789   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o -fopenmp
2021-07-10T06:43:19,233   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -fopenmp
2021-07-10T06:43:19,617   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T06:43:19,617                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T06:43:19,618                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T06:43:19,618                    from msmtools/estimation/dense/sampler_revpi.c:634:
2021-07-10T06:43:19,618   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T06:43:19,618      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T06:43:19,618         |  ^~~~~~~
2021-07-10T06:43:28,999   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T06:43:29,173   installing to build/bdist.linux-armv7l/wheel
2021-07-10T06:43:29,173   running install
2021-07-10T06:43:29,175   running install_lib
2021-07-10T06:43:29,180   creating build/bdist.linux-armv7l
2021-07-10T06:43:29,181   creating build/bdist.linux-armv7l/wheel
2021-07-10T06:43:29,183   creating build/bdist.linux-armv7l/wheel/msmtools
2021-07-10T06:43:29,185   creating build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T06:43:29,187   copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T06:43:29,190   copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T06:43:29,194   creating build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T06:43:29,195   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T06:43:29,198   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T06:43:29,201   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T06:43:29,203   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T06:43:29,206   creating build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T06:43:29,207   copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T06:43:29,210   copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T06:43:29,212   copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T06:43:29,215   copying build/lib.linux-armv7l-3.9/msmtools/flux/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T06:43:29,217   copying build/lib.linux-armv7l-3.9/msmtools/flux/api.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T06:43:29,221   copying build/lib.linux-armv7l-3.9/msmtools/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools
2021-07-10T06:43:29,224   creating build/bdist.linux-armv7l/wheel/msmtools/analysis
2021-07-10T06:43:29,226   creating build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,227   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,230   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,233   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,236   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,239   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,241   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,244   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,246   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,249   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,251   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,253   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,255   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,258   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,261   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,263   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,266   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T06:43:29,269   creating build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,270   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,273   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,275   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,278   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,281   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,283   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,286   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,288   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,291   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,294   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,296   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,298   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,301   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,304   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,306   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,309   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,312   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,314   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,316   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,319   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,321   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,323   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,325   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,327   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T06:43:29,330   copying build/lib.linux-armv7l-3.9/msmtools/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis
2021-07-10T06:43:29,332   copying build/lib.linux-armv7l-3.9/msmtools/analysis/api.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis
2021-07-10T06:43:29,335   copying build/lib.linux-armv7l-3.9/msmtools/_version.py -> build/bdist.linux-armv7l/wheel/msmtools
2021-07-10T06:43:29,338   creating build/bdist.linux-armv7l/wheel/msmtools/estimation
2021-07-10T06:43:29,339   creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,340   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,343   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,352   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,353   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,356   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,358   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,361   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,363   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/effective_counts.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,366   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,368   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,370   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,373   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,376   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,386   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T06:43:29,389   creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,390   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,409   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,412   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,414   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_nrev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,416   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,418   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,420   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,423   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,425   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,444   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,446   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T06:43:29,454   copying build/lib.linux-armv7l-3.9/msmtools/estimation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation
2021-07-10T06:43:29,456   copying build/lib.linux-armv7l-3.9/msmtools/estimation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation
2021-07-10T06:43:29,460   creating build/bdist.linux-armv7l/wheel/msmtools/generation
2021-07-10T06:43:29,461   copying build/lib.linux-armv7l-3.9/msmtools/generation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation
2021-07-10T06:43:29,463   copying build/lib.linux-armv7l-3.9/msmtools/generation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/generation
2021-07-10T06:43:29,466   creating build/bdist.linux-armv7l/wheel/msmtools/dtraj
2021-07-10T06:43:29,467   copying build/lib.linux-armv7l-3.9/msmtools/dtraj/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj
2021-07-10T06:43:29,469   copying build/lib.linux-armv7l-3.9/msmtools/dtraj/api.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj
2021-07-10T06:43:29,472   creating build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T06:43:29,473   copying build/lib.linux-armv7l-3.9/msmtools/util/numeric.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T06:43:29,476   creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T06:43:29,476   copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T06:43:29,480   copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T06:43:29,481   copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T06:43:29,483   copying build/lib.linux-armv7l-3.9/msmtools/util/exceptions.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T06:43:29,485   copying build/lib.linux-armv7l-3.9/msmtools/util/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T06:43:29,487   copying build/lib.linux-armv7l-3.9/msmtools/util/annotators.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T06:43:29,489   copying build/lib.linux-armv7l-3.9/msmtools/util/statistics.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T06:43:29,491   copying build/lib.linux-armv7l-3.9/msmtools/util/types.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T06:43:29,494   running install_egg_info
2021-07-10T06:43:29,516   running egg_info
2021-07-10T06:43:29,517   writing msmtools.egg-info/PKG-INFO
2021-07-10T06:43:29,519   writing dependency_links to msmtools.egg-info/dependency_links.txt
2021-07-10T06:43:29,521   writing requirements to msmtools.egg-info/requires.txt
2021-07-10T06:43:29,522   writing top-level names to msmtools.egg-info/top_level.txt
2021-07-10T06:43:29,553   reading manifest file 'msmtools.egg-info/SOURCES.txt'
2021-07-10T06:43:29,565   reading manifest template 'MANIFEST.in'
2021-07-10T06:43:29,640   warning: no files found matching 'tests/data/*' under directory 'msmtools'
2021-07-10T06:43:29,678   warning: no files found matching 'testfiles/' under directory 'msmtools'
2021-07-10T06:43:30,109   adding license file 'LICENSE.txt'
2021-07-10T06:43:30,122   writing manifest file 'msmtools.egg-info/SOURCES.txt'
2021-07-10T06:43:30,124   Copying msmtools.egg-info to build/bdist.linux-armv7l/wheel/msmtools-1.0.3-py3.9.egg-info
2021-07-10T06:43:30,137   running install_scripts
2021-07-10T06:43:30,182   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-10T06:43:30,186   creating build/bdist.linux-armv7l/wheel/msmtools-1.0.3.dist-info/WHEEL
2021-07-10T06:43:30,189   creating '/tmp/pip-wheel-0cllmfdx/msmtools-1.0.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T06:43:30,192   adding 'msmtools/__init__.py'
2021-07-10T06:43:30,193   adding 'msmtools/_version.py'
2021-07-10T06:43:30,195   adding 'msmtools/analysis/__init__.py'
2021-07-10T06:43:30,202   adding 'msmtools/analysis/api.py'
2021-07-10T06:43:30,205   adding 'msmtools/analysis/dense/__init__.py'
2021-07-10T06:43:30,207   adding 'msmtools/analysis/dense/assessment.py'
2021-07-10T06:43:30,208   adding 'msmtools/analysis/dense/assessment_test.py'
2021-07-10T06:43:30,210   adding 'msmtools/analysis/dense/birth_death_chain.py'
2021-07-10T06:43:30,211   adding 'msmtools/analysis/dense/committor.py'
2021-07-10T06:43:30,213   adding 'msmtools/analysis/dense/committor_test.py'
2021-07-10T06:43:30,215   adding 'msmtools/analysis/dense/correlations.py'
2021-07-10T06:43:30,217   adding 'msmtools/analysis/dense/correlations_test.py'
2021-07-10T06:43:30,219   adding 'msmtools/analysis/dense/decomposition.py'
2021-07-10T06:43:30,221   adding 'msmtools/analysis/dense/decomposition_test.py'
2021-07-10T06:43:30,223   adding 'msmtools/analysis/dense/expectations.py'
2021-07-10T06:43:30,224   adding 'msmtools/analysis/dense/expectations_test.py'
2021-07-10T06:43:30,226   adding 'msmtools/analysis/dense/fingerprints.py'
2021-07-10T06:43:30,228   adding 'msmtools/analysis/dense/fingerprints_test.py'
2021-07-10T06:43:30,230   adding 'msmtools/analysis/dense/hitting_probability.py'
2021-07-10T06:43:30,231   adding 'msmtools/analysis/dense/hitting_probability_test.py'
2021-07-10T06:43:30,232   adding 'msmtools/analysis/dense/mean_first_passage_time.py'
2021-07-10T06:43:30,234   adding 'msmtools/analysis/dense/mean_first_passage_time_test.py'
2021-07-10T06:43:30,237   adding 'msmtools/analysis/dense/pcca.py'
2021-07-10T06:43:30,239   adding 'msmtools/analysis/dense/pcca_test.py'
2021-07-10T06:43:30,241   adding 'msmtools/analysis/dense/sensitivity.py'
2021-07-10T06:43:30,242   adding 'msmtools/analysis/dense/sensitivity_test.py'
2021-07-10T06:43:30,244   adding 'msmtools/analysis/dense/stationary_vector.py'
2021-07-10T06:43:30,245   adding 'msmtools/analysis/dense/stationary_vector_test.py'
2021-07-10T06:43:30,247   adding 'msmtools/analysis/sparse/__init__.py'
2021-07-10T06:43:30,249   adding 'msmtools/analysis/sparse/assessment.py'
2021-07-10T06:43:30,250   adding 'msmtools/analysis/sparse/assessment_test.py'
2021-07-10T06:43:30,252   adding 'msmtools/analysis/sparse/birth_death_chain.py'
2021-07-10T06:43:30,253   adding 'msmtools/analysis/sparse/committor.py'
2021-07-10T06:43:30,255   adding 'msmtools/analysis/sparse/committor_test.py'
2021-07-10T06:43:30,257   adding 'msmtools/analysis/sparse/decomposition.py'
2021-07-10T06:43:30,259   adding 'msmtools/analysis/sparse/decomposition_test.py'
2021-07-10T06:43:30,261   adding 'msmtools/analysis/sparse/expectations.py'
2021-07-10T06:43:30,263   adding 'msmtools/analysis/sparse/expectations_test.py'
2021-07-10T06:43:30,265   adding 'msmtools/analysis/sparse/fingerprints.py'
2021-07-10T06:43:30,266   adding 'msmtools/analysis/sparse/fingerprints_test.py'
2021-07-10T06:43:30,268   adding 'msmtools/analysis/sparse/mean_first_passage_time.py'
2021-07-10T06:43:30,269   adding 'msmtools/analysis/sparse/mean_first_passage_time_test.py'
2021-07-10T06:43:30,271   adding 'msmtools/analysis/sparse/stationary_vector.py'
2021-07-10T06:43:30,272   adding 'msmtools/analysis/sparse/stationary_vector_test.py'
2021-07-10T06:43:30,274   adding 'msmtools/dtraj/__init__.py'
2021-07-10T06:43:30,276   adding 'msmtools/dtraj/api.py'
2021-07-10T06:43:30,279   adding 'msmtools/estimation/__init__.py'
2021-07-10T06:43:30,284   adding 'msmtools/estimation/api.py'
2021-07-10T06:43:30,286   adding 'msmtools/estimation/dense/__init__.py'
2021-07-10T06:43:30,288   adding 'msmtools/estimation/dense/bootstrapping.py'
2021-07-10T06:43:30,290   adding 'msmtools/estimation/dense/covariance.py'
2021-07-10T06:43:30,291   adding 'msmtools/estimation/dense/covariance_test.py'
2021-07-10T06:43:30,337   adding 'msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T06:43:30,341   adding 'msmtools/estimation/dense/sampler_nrev.py'
2021-07-10T06:43:30,486   adding 'msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T06:43:30,644   adding 'msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T06:43:30,652   adding 'msmtools/estimation/dense/tmatrix_sampler.py'
2021-07-10T06:43:30,653   adding 'msmtools/estimation/dense/tmatrix_sampler_test.py'
2021-07-10T06:43:30,655   adding 'msmtools/estimation/dense/transition_matrix.py'
2021-07-10T06:43:30,657   adding 'msmtools/estimation/sparse/__init__.py'
2021-07-10T06:43:30,658   adding 'msmtools/estimation/sparse/connectivity.py'
2021-07-10T06:43:30,660   adding 'msmtools/estimation/sparse/connectivity_test.py'
2021-07-10T06:43:30,662   adding 'msmtools/estimation/sparse/count_matrix.py'
2021-07-10T06:43:30,664   adding 'msmtools/estimation/sparse/count_matrix_test.py'
2021-07-10T06:43:30,666   adding 'msmtools/estimation/sparse/effective_counts.py'
2021-07-10T06:43:30,667   adding 'msmtools/estimation/sparse/likelihood.py'
2021-07-10T06:43:30,668   adding 'msmtools/estimation/sparse/likelihood_test.py'
2021-07-10T06:43:30,720   adding 'msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T06:43:30,778   adding 'msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T06:43:30,782   adding 'msmtools/estimation/sparse/prior.py'
2021-07-10T06:43:30,783   adding 'msmtools/estimation/sparse/prior_test.py'
2021-07-10T06:43:30,784   adding 'msmtools/estimation/sparse/transition_matrix.py'
2021-07-10T06:43:30,785   adding 'msmtools/estimation/sparse/transition_matrix_test.py'
2021-07-10T06:43:30,787   adding 'msmtools/flux/__init__.py'
2021-07-10T06:43:30,790   adding 'msmtools/flux/api.py'
2021-07-10T06:43:30,792   adding 'msmtools/flux/reactive_flux.py'
2021-07-10T06:43:30,794   adding 'msmtools/flux/reactive_flux_test.py'
2021-07-10T06:43:30,796   adding 'msmtools/flux/dense/__init__.py'
2021-07-10T06:43:30,797   adding 'msmtools/flux/dense/tpt.py'
2021-07-10T06:43:30,799   adding 'msmtools/flux/dense/tpt_test.py'
2021-07-10T06:43:30,801   adding 'msmtools/flux/sparse/__init__.py'
2021-07-10T06:43:30,803   adding 'msmtools/flux/sparse/pathways.py'
2021-07-10T06:43:30,805   adding 'msmtools/flux/sparse/tpt.py'
2021-07-10T06:43:30,807   adding 'msmtools/flux/sparse/tpt_test.py'
2021-07-10T06:43:30,809   adding 'msmtools/generation/__init__.py'
2021-07-10T06:43:30,810   adding 'msmtools/generation/api.py'
2021-07-10T06:43:30,812   adding 'msmtools/util/__init__.py'
2021-07-10T06:43:30,814   adding 'msmtools/util/annotators.py'
2021-07-10T06:43:30,815   adding 'msmtools/util/exceptions.py'
2021-07-10T06:43:30,816   adding 'msmtools/util/numeric.py'
2021-07-10T06:43:30,818   adding 'msmtools/util/statistics.py'
2021-07-10T06:43:30,821   adding 'msmtools/util/types.py'
2021-07-10T06:43:30,823   adding 'msmtools/util/matrix/__init__.py'
2021-07-10T06:43:30,825   adding 'msmtools/util/matrix/matrix.py'
2021-07-10T06:43:30,827   adding 'msmtools/util/matrix/matrix_test.py'
2021-07-10T06:43:30,829   adding 'msmtools-1.0.3.dist-info/LICENSE.txt'
2021-07-10T06:43:30,830   adding 'msmtools-1.0.3.dist-info/METADATA'
2021-07-10T06:43:30,831   adding 'msmtools-1.0.3.dist-info/WHEEL'
2021-07-10T06:43:30,832   adding 'msmtools-1.0.3.dist-info/top_level.txt'
2021-07-10T06:43:30,834   adding 'msmtools-1.0.3.dist-info/RECORD'
2021-07-10T06:43:30,853   removing build/bdist.linux-armv7l/wheel
2021-07-10T06:43:31,030   Building wheel for msmtools (setup.py): finished with status 'done'
2021-07-10T06:43:31,046   Created wheel for msmtools: filename=msmtools-1.0.3-cp39-cp39-linux_armv7l.whl size=1074243 sha256=b98962fe05d039caa8789c2bb735bc2fe1fa78061c93f8647ddaa9cc75faf176
2021-07-10T06:43:31,047   Stored in directory: /tmp/pip-ephem-wheel-cache-r7lg3mx5/wheels/d6/01/59/5d84bd5910be4dd6e308ff5ee8dd4623895b47b20e4c1aa82d
2021-07-10T06:43:31,060 Successfully built msmtools
2021-07-10T06:43:31,111 Removed build tracker: '/tmp/pip-req-tracker-ue42mkrd'