2021-07-10T07:12:37,674 Created temporary directory: /tmp/pip-ephem-wheel-cache-h3ohkgpx
2021-07-10T07:12:37,677 Created temporary directory: /tmp/pip-req-tracker-pnr49p8u
2021-07-10T07:12:37,678 Initialized build tracking at /tmp/pip-req-tracker-pnr49p8u
2021-07-10T07:12:37,678 Created build tracker: /tmp/pip-req-tracker-pnr49p8u
2021-07-10T07:12:37,678 Entered build tracker: /tmp/pip-req-tracker-pnr49p8u
2021-07-10T07:12:37,679 Created temporary directory: /tmp/pip-wheel-0tt1hq_l
2021-07-10T07:12:37,711 1 location(s) to search for versions of bhmm:
2021-07-10T07:12:37,711 * https://pypi.org/simple/bhmm/
2021-07-10T07:12:37,712 Fetching project page and analyzing links: https://pypi.org/simple/bhmm/
2021-07-10T07:12:37,712 Getting page https://pypi.org/simple/bhmm/
2021-07-10T07:12:37,714 Found index url https://pypi.org/simple
2021-07-10T07:12:37,807   Found link https://files.pythonhosted.org/packages/61/56/3de716dfa04d42acf328f665889a2ac487421543ad38ad44f4e55f8155d6/bhmm-0.3.0.tar.gz#sha256=d84fd39fcfc0b933fb835cd4af69f61fd704347e01c5eb2a3e7ce6579c184122 (from https://pypi.org/simple/bhmm/), version: 0.3.0
2021-07-10T07:12:37,807   Found link https://files.pythonhosted.org/packages/b3/52/116bf9a87fb6d56bca3d8d0c87bef8597b43e6cf0a6f2bf4aca530e4ce7f/bhmm-0.4.2.tar.gz#sha256=1bc7a713bbda2c81878d0d798d51692fedfa18707543095e2b9584989cf432b3 (from https://pypi.org/simple/bhmm/), version: 0.4.2
2021-07-10T07:12:37,808   Found link https://files.pythonhosted.org/packages/ca/58/c0eb124efbdf18cb62675a16788ec84b541a4358ebf46e1add74284c9f02/bhmm-0.5.0.tar.gz#sha256=4c094c054646e8baf850699aab398d385a79cf51d91d15f715e6c5d69d74b198 (from https://pypi.org/simple/bhmm/), version: 0.5.0
2021-07-10T07:12:37,808   Found link https://files.pythonhosted.org/packages/91/b4/c01c15efdab2a542db8cae6d49ab860644eea174a3822685cef3a3ed93ac/bhmm-0.5.1.tar.gz#sha256=7bae6d51ddfc88c2cec84ce408a2792f91bfef353621798c597773b8daab487e (from https://pypi.org/simple/bhmm/), version: 0.5.1
2021-07-10T07:12:37,808   Found link https://files.pythonhosted.org/packages/14/17/9043b8dfb2d04ab7de09b3057d37c1385056d63702e4cca539b121e806e6/bhmm-0.5.2.tar.gz#sha256=c2848188a73e7da6735ac7a636f8892f2dd939a6148437cc8fd84c4d2f5b21fb (from https://pypi.org/simple/bhmm/), version: 0.5.2
2021-07-10T07:12:37,809   Found link https://files.pythonhosted.org/packages/ee/78/d607b2d74022a4146c5d1940f9e78ffaaabc55c1defdbe9ddcba92ba08a4/bhmm-0.5.3.tar.gz#sha256=77d4e4ad546537a0f0efd78b3180a7d0d0836e92d9d5efc698fcd7740da46d6f (from https://pypi.org/simple/bhmm/), version: 0.5.3
2021-07-10T07:12:37,809   Found link https://files.pythonhosted.org/packages/a0/16/4ab0903a8a3a9ae3337193221d223b8e2fe8701960b680018bbec5342a03/bhmm-0.6.tar.gz#sha256=a5b0609801d9a61cf36892f975c67294dc24ccef8d1906031c065ec286d56fae (from https://pypi.org/simple/bhmm/), version: 0.6
2021-07-10T07:12:37,809   Found link https://files.pythonhosted.org/packages/b9/6c/552b35b4765fadfcfe796b2b6d28fe38d622a28b74dd882f7980a4acb699/bhmm-0.6.1.tar.gz#sha256=eb5a1d93d7c46f6d2ffcb6901d2bdf3297dcbd4b8835a9da1cbd98c9567f265e (from https://pypi.org/simple/bhmm/), version: 0.6.1
2021-07-10T07:12:37,809   Found link https://files.pythonhosted.org/packages/10/9c/abea596a522277674836b8ec398a30092933826cffc04ad1823be0f06b5c/bhmm-0.6.2.tar.gz#sha256=c2709c101c0e3921aac992b7b24d279f24c1455313b4eae90da83b6332cfa464 (from https://pypi.org/simple/bhmm/), version: 0.6.2
2021-07-10T07:12:37,810   Found link https://files.pythonhosted.org/packages/ac/91/27b35bfc73cfe529ed9d4133b2fa20180ccaa2c6c9f55e49779f1319ecf0/bhmm-0.6.3.tar.gz#sha256=f7a920542a18e65debb894e4287990255e32306f026892fa3b82e902d45e5dd2 (from https://pypi.org/simple/bhmm/), version: 0.6.3
2021-07-10T07:12:37,810 Skipping link: not a file: https://pypi.org/simple/bhmm/
2021-07-10T07:12:37,829 Given no hashes to check 1 links for project 'bhmm': discarding no candidates
2021-07-10T07:12:37,847 Collecting bhmm==0.5.0
2021-07-10T07:12:37,849   Created temporary directory: /tmp/pip-unpack-j_r1rx6m
2021-07-10T07:12:38,088   Downloading bhmm-0.5.0.tar.gz (329 kB)
2021-07-10T07:12:38,414   Added bhmm==0.5.0 from https://files.pythonhosted.org/packages/ca/58/c0eb124efbdf18cb62675a16788ec84b541a4358ebf46e1add74284c9f02/bhmm-0.5.0.tar.gz#sha256=4c094c054646e8baf850699aab398d385a79cf51d91d15f715e6c5d69d74b198 to build tracker '/tmp/pip-req-tracker-pnr49p8u'
2021-07-10T07:12:38,415     Running setup.py (path:/tmp/pip-wheel-0tt1hq_l/bhmm_66da657f2ab540c993c17c9747484077/setup.py) egg_info for package bhmm
2021-07-10T07:12:38,416     Created temporary directory: /tmp/pip-pip-egg-info-l7jiygef
2021-07-10T07:12:38,416     Running command python setup.py egg_info
2021-07-10T07:12:40,316     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0tt1hq_l/bhmm_66da657f2ab540c993c17c9747484077/bhmm/hidden/impl_c/hidden.pyx
2021-07-10T07:12:40,317       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:12:41,945     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0tt1hq_l/bhmm_66da657f2ab540c993c17c9747484077/bhmm/output_models/impl_c/discrete.pyx
2021-07-10T07:12:41,946       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:12:43,256     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0tt1hq_l/bhmm_66da657f2ab540c993c17c9747484077/bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T07:12:43,256       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:12:44,681     Compiling ./bhmm/hidden/impl_c/hidden.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:12:44,681     Compiling ./bhmm/output_models/impl_c/discrete.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:12:44,681     Compiling ./bhmm/output_models/impl_c/gaussian.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:12:44,681     [1/3] Cythonizing ./bhmm/hidden/impl_c/hidden.pyx
2021-07-10T07:12:44,682     [2/3] Cythonizing ./bhmm/output_models/impl_c/discrete.pyx
2021-07-10T07:12:44,682     [3/3] Cythonizing ./bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T07:12:44,839     running egg_info
2021-07-10T07:12:44,842     creating /tmp/pip-pip-egg-info-l7jiygef/bhmm.egg-info
2021-07-10T07:12:44,842     writing /tmp/pip-pip-egg-info-l7jiygef/bhmm.egg-info/PKG-INFO
2021-07-10T07:12:44,845     writing dependency_links to /tmp/pip-pip-egg-info-l7jiygef/bhmm.egg-info/dependency_links.txt
2021-07-10T07:12:44,847     writing requirements to /tmp/pip-pip-egg-info-l7jiygef/bhmm.egg-info/requires.txt
2021-07-10T07:12:44,848     writing top-level names to /tmp/pip-pip-egg-info-l7jiygef/bhmm.egg-info/top_level.txt
2021-07-10T07:12:44,849     writing manifest file '/tmp/pip-pip-egg-info-l7jiygef/bhmm.egg-info/SOURCES.txt'
2021-07-10T07:12:44,878     reading manifest file '/tmp/pip-pip-egg-info-l7jiygef/bhmm.egg-info/SOURCES.txt'
2021-07-10T07:12:44,879     reading manifest template 'MANIFEST.in'
2021-07-10T07:12:44,998     writing manifest file '/tmp/pip-pip-egg-info-l7jiygef/bhmm.egg-info/SOURCES.txt'
2021-07-10T07:12:45,227   Source in /tmp/pip-wheel-0tt1hq_l/bhmm_66da657f2ab540c993c17c9747484077 has version 0.5.0, which satisfies requirement bhmm==0.5.0 from https://files.pythonhosted.org/packages/ca/58/c0eb124efbdf18cb62675a16788ec84b541a4358ebf46e1add74284c9f02/bhmm-0.5.0.tar.gz#sha256=4c094c054646e8baf850699aab398d385a79cf51d91d15f715e6c5d69d74b198
2021-07-10T07:12:45,227   Removed bhmm==0.5.0 from https://files.pythonhosted.org/packages/ca/58/c0eb124efbdf18cb62675a16788ec84b541a4358ebf46e1add74284c9f02/bhmm-0.5.0.tar.gz#sha256=4c094c054646e8baf850699aab398d385a79cf51d91d15f715e6c5d69d74b198 from build tracker '/tmp/pip-req-tracker-pnr49p8u'
2021-07-10T07:12:45,231 Created temporary directory: /tmp/pip-unpack-s1tj2str
2021-07-10T07:12:45,232 Building wheels for collected packages: bhmm
2021-07-10T07:12:45,236   Created temporary directory: /tmp/pip-wheel-80wk2c0g
2021-07-10T07:12:45,236   Building wheel for bhmm (setup.py): started
2021-07-10T07:12:45,237   Destination directory: /tmp/pip-wheel-80wk2c0g
2021-07-10T07:12:45,237   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0tt1hq_l/bhmm_66da657f2ab540c993c17c9747484077/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0tt1hq_l/bhmm_66da657f2ab540c993c17c9747484077/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-80wk2c0g
2021-07-10T07:12:47,322   running bdist_wheel
2021-07-10T07:12:47,327   running build
2021-07-10T07:12:47,327   running build_py
2021-07-10T07:12:47,334   creating build
2021-07-10T07:12:47,334   creating build/lib.linux-armv7l-3.9
2021-07-10T07:12:47,335   creating build/lib.linux-armv7l-3.9/bhmm
2021-07-10T07:12:47,336   copying bhmm/version.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T07:12:47,338   copying bhmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T07:12:47,340   copying bhmm/api.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T07:12:47,343   creating build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T07:12:47,344   copying bhmm/init/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T07:12:47,346   copying bhmm/init/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T07:12:47,348   copying bhmm/init/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T07:12:47,350   creating build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:12:47,351   copying bhmm/tests/test_init.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:12:47,353   copying bhmm/tests/test_testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:12:47,355   copying bhmm/tests/test_mlhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:12:47,358   copying bhmm/tests/test_hidden.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:12:47,361   copying bhmm/tests/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:12:47,363   copying bhmm/tests/test_output_gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:12:47,365   copying bhmm/tests/test_bhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:12:47,367   copying bhmm/tests/test_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:12:47,370   creating build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T07:12:47,371   copying bhmm/hidden/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T07:12:47,373   copying bhmm/hidden/api.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T07:12:47,377   creating build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:12:47,378   copying bhmm/util/config.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:12:47,380   copying bhmm/util/types.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:12:47,383   copying bhmm/util/statistics.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:12:47,385   copying bhmm/util/testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:12:47,389   copying bhmm/util/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:12:47,391   copying bhmm/util/logger.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:12:47,393   copying bhmm/util/analysis.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:12:47,396   creating build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:12:47,397   copying bhmm/estimators/bayesian_sampling.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:12:47,400   copying bhmm/estimators/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:12:47,402   copying bhmm/estimators/_tmatrix_disconnected.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:12:47,405   copying bhmm/estimators/maximum_likelihood.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:12:47,408   creating build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:12:47,409   copying bhmm/output_models/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:12:47,412   copying bhmm/output_models/outputmodel.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:12:47,414   copying bhmm/output_models/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:12:47,416   copying bhmm/output_models/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:12:47,419   creating build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-10T07:12:47,420   copying bhmm/_external/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-10T07:12:47,423   creating build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:12:47,424   copying bhmm/hmm/generic_sampled_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:12:47,427   copying bhmm/hmm/gaussian_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:12:47,429   copying bhmm/hmm/generic_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:12:47,432   copying bhmm/hmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:12:47,434   copying bhmm/hmm/discrete_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:12:47,436   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T07:12:47,437   copying bhmm/hidden/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T07:12:47,440   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T07:12:47,441   copying bhmm/hidden/impl_python/hidden.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T07:12:47,444   copying bhmm/hidden/impl_python/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T07:12:47,446   creating build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T07:12:47,447   copying bhmm/output_models/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T07:12:47,450   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T07:12:47,451   copying bhmm/_external/sklearn/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T07:12:47,452   copying bhmm/_external/sklearn/base.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T07:12:47,455   copying bhmm/_external/sklearn/utils.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T07:12:47,458   creating build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T07:12:47,459   copying bhmm/_external/clustering/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T07:12:47,462   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T07:12:47,463   copying bhmm/_external/sklearn/mixture/gmm.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T07:12:47,466   copying bhmm/_external/sklearn/mixture/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T07:12:47,468   creating build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T07:12:47,469   copying bhmm/tests/data/2well_energy.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T07:12:47,471   copying bhmm/tests/data/2well_traj_100K.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T07:12:47,483   copying bhmm/tests/data/2well_P.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T07:12:47,496   running build_ext
2021-07-10T07:12:47,503   building 'bhmm.hidden.impl_c.hidden' extension
2021-07-10T07:12:47,503   creating build/temp.linux-armv7l-3.9
2021-07-10T07:12:47,504   creating build/temp.linux-armv7l-3.9/bhmm
2021-07-10T07:12:47,504   creating build/temp.linux-armv7l-3.9/bhmm/hidden
2021-07-10T07:12:47,505   creating build/temp.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T07:12:47,506   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/_hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o
2021-07-10T07:12:47,673   ./bhmm/hidden/impl_c/_hidden.c: In function ‘_compute_viterbi’:
2021-07-10T07:12:47,673   ./bhmm/hidden/impl_c/_hidden.c:207:26: warning: unused variable ‘p’ [-Wunused-variable]
2021-07-10T07:12:47,673     207 |     double sum, maxprod, p;
2021-07-10T07:12:47,674         |                          ^
2021-07-10T07:12:47,674   ./bhmm/hidden/impl_c/_hidden.c:207:17: warning: unused variable ‘maxprod’ [-Wunused-variable]
2021-07-10T07:12:47,674     207 |     double sum, maxprod, p;
2021-07-10T07:12:47,674         |                 ^~~~~~~
2021-07-10T07:12:48,138   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o
2021-07-10T07:12:48,550   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:12:48,550                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:12:48,551                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:12:48,551                    from ./bhmm/hidden/impl_c/hidden.c:638:
2021-07-10T07:12:48,551   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:12:48,551      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:12:48,551         |  ^~~~~~~
2021-07-10T07:12:54,862   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o -o build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so
2021-07-10T07:12:55,006   building 'bhmm.output_models.impl_c.discrete' extension
2021-07-10T07:12:55,007   creating build/temp.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:12:55,007   creating build/temp.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T07:12:55,008   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o
2021-07-10T07:12:55,065   ./bhmm/output_models/impl_c/_discrete.c: In function ‘_update_pout’:
2021-07-10T07:12:55,065   ./bhmm/output_models/impl_c/_discrete.c:22:12: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T07:12:55,066      22 |     int i, j, t, o;
2021-07-10T07:12:55,066         |            ^
2021-07-10T07:12:55,127   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o
2021-07-10T07:12:55,550   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:12:55,550                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:12:55,550                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:12:55,550                    from ./bhmm/output_models/impl_c/discrete.c:638:
2021-07-10T07:12:55,550   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:12:55,551      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:12:55,551         |  ^~~~~~~
2021-07-10T07:12:57,561   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so
2021-07-10T07:12:57,686   building 'bhmm.output_models.impl_c.gaussian' extension
2021-07-10T07:12:57,686   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o
2021-07-10T07:12:57,861   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o
2021-07-10T07:12:58,238   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:12:58,239                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:12:58,239                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:12:58,239                    from ./bhmm/output_models/impl_c/gaussian.c:638:
2021-07-10T07:12:58,239   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:12:58,239      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:12:58,239         |  ^~~~~~~
2021-07-10T07:13:03,100   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so
2021-07-10T07:13:03,244   building 'bhmm._external.clustering.kmeans_clustering' extension
2021-07-10T07:13:03,245   creating build/temp.linux-armv7l-3.9/bhmm/_external
2021-07-10T07:13:03,245   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T07:13:03,246   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering/src
2021-07-10T07:13:03,247   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/clustering.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o -std=c99
2021-07-10T07:13:03,635   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:13:03,635                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:13:03,635                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:13:03,635                    from ./bhmm/_external/clustering/include/clustering.h:34,
2021-07-10T07:13:03,635                    from ./bhmm/_external/clustering/src/clustering.c:27:
2021-07-10T07:13:03,636   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:13:03,636      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:13:03,636         |  ^~~~~~~
2021-07-10T07:13:03,836   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/kmeans.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -std=c99
2021-07-10T07:13:04,147   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:13:04,147                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:13:04,147                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:13:04,147                    from ./bhmm/_external/clustering/include/clustering.h:34,
2021-07-10T07:13:04,147                    from ./bhmm/_external/clustering/src/kmeans.c:27:
2021-07-10T07:13:04,148   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:13:04,148      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:13:04,148         |  ^~~~~~~
2021-07-10T07:13:04,172   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-10T07:13:04,172   ./bhmm/_external/clustering/src/kmeans.c:58:38: warning: variable ‘py_res’ set but not used [-Wunused-but-set-variable]
2021-07-10T07:13:04,173      58 |     PyObject *py_centers, *py_item, *py_res;
2021-07-10T07:13:04,173         |                                      ^~~~~~
2021-07-10T07:13:04,189   At top level:
2021-07-10T07:13:04,190   ./bhmm/_external/clustering/src/kmeans.c:526:1: warning: ‘error_out’ defined but not used [-Wunused-function]
2021-07-10T07:13:04,190     526 | error_out(PyObject *m) {
2021-07-10T07:13:04,190         | ^~~~~~~~~
2021-07-10T07:13:04,296   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-10T07:13:04,296   ./bhmm/_external/clustering/src/kmeans.c:178:50: warning: ‘closest_center_index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T07:13:04,297     178 |          new_centers[closest_center_index*dim+j] += chunk[i*dim+j];
2021-07-10T07:13:04,297         |                                                  ^~
2021-07-10T07:13:04,795   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -o build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so
2021-07-10T07:13:04,926   installing to build/bdist.linux-armv7l/wheel
2021-07-10T07:13:04,926   running install
2021-07-10T07:13:04,928   running install_lib
2021-07-10T07:13:04,932   creating build/bdist.linux-armv7l
2021-07-10T07:13:04,932   creating build/bdist.linux-armv7l/wheel
2021-07-10T07:13:04,934   creating build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T07:13:04,936   creating build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T07:13:04,937   copying build/lib.linux-armv7l-3.9/bhmm/init/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T07:13:04,939   copying build/lib.linux-armv7l-3.9/bhmm/init/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T07:13:04,941   copying build/lib.linux-armv7l-3.9/bhmm/init/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T07:13:04,944   creating build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:13:04,945   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_init.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:13:04,947   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:13:04,950   creating build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T07:13:04,951   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_energy.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T07:13:04,953   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_traj_100K.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T07:13:04,970   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_P.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T07:13:04,972   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_mlhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:13:04,975   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:13:04,978   copying build/lib.linux-armv7l-3.9/bhmm/tests/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:13:04,980   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_output_gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:13:04,982   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_bhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:13:04,985   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:13:04,987   copying build/lib.linux-armv7l-3.9/bhmm/version.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T07:13:04,990   creating build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T07:13:04,992   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T07:13:04,993   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T07:13:05,009   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T07:13:05,012   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T07:13:05,013   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T07:13:05,016   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T07:13:05,018   copying build/lib.linux-armv7l-3.9/bhmm/hidden/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T07:13:05,020   copying build/lib.linux-armv7l-3.9/bhmm/hidden/api.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T07:13:05,023   creating build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:13:05,024   copying build/lib.linux-armv7l-3.9/bhmm/util/config.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:13:05,026   copying build/lib.linux-armv7l-3.9/bhmm/util/types.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:13:05,029   copying build/lib.linux-armv7l-3.9/bhmm/util/statistics.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:13:05,031   copying build/lib.linux-armv7l-3.9/bhmm/util/testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:13:05,034   copying build/lib.linux-armv7l-3.9/bhmm/util/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:13:05,036   copying build/lib.linux-armv7l-3.9/bhmm/util/logger.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:13:05,038   copying build/lib.linux-armv7l-3.9/bhmm/util/analysis.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:13:05,040   copying build/lib.linux-armv7l-3.9/bhmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T07:13:05,043   creating build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:13:05,044   copying build/lib.linux-armv7l-3.9/bhmm/estimators/bayesian_sampling.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:13:05,047   copying build/lib.linux-armv7l-3.9/bhmm/estimators/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:13:05,049   copying build/lib.linux-armv7l-3.9/bhmm/estimators/_tmatrix_disconnected.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:13:05,052   copying build/lib.linux-armv7l-3.9/bhmm/estimators/maximum_likelihood.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:13:05,055   creating build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:13:05,056   copying build/lib.linux-armv7l-3.9/bhmm/output_models/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:13:05,059   creating build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T07:13:05,060   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T07:13:05,062   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T07:13:05,077   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T07:13:05,083   copying build/lib.linux-armv7l-3.9/bhmm/output_models/outputmodel.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:13:05,085   copying build/lib.linux-armv7l-3.9/bhmm/output_models/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:13:05,087   copying build/lib.linux-armv7l-3.9/bhmm/output_models/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:13:05,090   creating build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-10T07:13:05,092   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T07:13:05,093   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T07:13:05,094   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/base.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T07:13:05,097   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T07:13:05,098   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/gmm.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T07:13:05,101   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T07:13:05,103   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/utils.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T07:13:05,106   creating build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T07:13:05,107   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T07:13:05,108   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T07:13:05,113   copying build/lib.linux-armv7l-3.9/bhmm/_external/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-10T07:13:05,114   copying build/lib.linux-armv7l-3.9/bhmm/api.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T07:13:05,117   creating build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:13:05,118   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_sampled_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:13:05,121   copying build/lib.linux-armv7l-3.9/bhmm/hmm/gaussian_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:13:05,123   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:13:05,126   copying build/lib.linux-armv7l-3.9/bhmm/hmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:13:05,128   copying build/lib.linux-armv7l-3.9/bhmm/hmm/discrete_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:13:05,129   running install_egg_info
2021-07-10T07:13:05,149   running egg_info
2021-07-10T07:13:05,150   writing bhmm.egg-info/PKG-INFO
2021-07-10T07:13:05,152   writing dependency_links to bhmm.egg-info/dependency_links.txt
2021-07-10T07:13:05,154   writing requirements to bhmm.egg-info/requires.txt
2021-07-10T07:13:05,155   writing top-level names to bhmm.egg-info/top_level.txt
2021-07-10T07:13:05,176   reading manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T07:13:05,181   reading manifest template 'MANIFEST.in'
2021-07-10T07:13:05,300   writing manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T07:13:05,302   Copying bhmm.egg-info to build/bdist.linux-armv7l/wheel/bhmm-0.5.0-py3.9.egg-info
2021-07-10T07:13:05,317   running install_scripts
2021-07-10T07:13:05,368   creating build/bdist.linux-armv7l/wheel/bhmm-0.5.0.dist-info/WHEEL
2021-07-10T07:13:05,370   creating '/tmp/pip-wheel-80wk2c0g/bhmm-0.5.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T07:13:05,373   adding 'bhmm/__init__.py'
2021-07-10T07:13:05,375   adding 'bhmm/api.py'
2021-07-10T07:13:05,376   adding 'bhmm/version.py'
2021-07-10T07:13:05,378   adding 'bhmm/_external/__init__.py'
2021-07-10T07:13:05,380   adding 'bhmm/_external/clustering/__init__.py'
2021-07-10T07:13:05,394   adding 'bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:13:05,396   adding 'bhmm/_external/sklearn/__init__.py'
2021-07-10T07:13:05,398   adding 'bhmm/_external/sklearn/base.py'
2021-07-10T07:13:05,400   adding 'bhmm/_external/sklearn/utils.py'
2021-07-10T07:13:05,402   adding 'bhmm/_external/sklearn/mixture/__init__.py'
2021-07-10T07:13:05,406   adding 'bhmm/_external/sklearn/mixture/gmm.py'
2021-07-10T07:13:05,408   adding 'bhmm/estimators/__init__.py'
2021-07-10T07:13:05,409   adding 'bhmm/estimators/_tmatrix_disconnected.py'
2021-07-10T07:13:05,411   adding 'bhmm/estimators/bayesian_sampling.py'
2021-07-10T07:13:05,413   adding 'bhmm/estimators/maximum_likelihood.py'
2021-07-10T07:13:05,415   adding 'bhmm/hidden/__init__.py'
2021-07-10T07:13:05,417   adding 'bhmm/hidden/api.py'
2021-07-10T07:13:05,419   adding 'bhmm/hidden/impl_c/__init__.py'
2021-07-10T07:13:05,508   adding 'bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:13:05,513   adding 'bhmm/hidden/impl_python/__init__.py'
2021-07-10T07:13:05,515   adding 'bhmm/hidden/impl_python/hidden.py'
2021-07-10T07:13:05,516   adding 'bhmm/hmm/__init__.py'
2021-07-10T07:13:05,518   adding 'bhmm/hmm/discrete_hmm.py'
2021-07-10T07:13:05,519   adding 'bhmm/hmm/gaussian_hmm.py'
2021-07-10T07:13:05,522   adding 'bhmm/hmm/generic_hmm.py'
2021-07-10T07:13:05,524   adding 'bhmm/hmm/generic_sampled_hmm.py'
2021-07-10T07:13:05,525   adding 'bhmm/init/__init__.py'
2021-07-10T07:13:05,527   adding 'bhmm/init/discrete.py'
2021-07-10T07:13:05,528   adding 'bhmm/init/gaussian.py'
2021-07-10T07:13:05,530   adding 'bhmm/output_models/__init__.py'
2021-07-10T07:13:05,532   adding 'bhmm/output_models/discrete.py'
2021-07-10T07:13:05,534   adding 'bhmm/output_models/gaussian.py'
2021-07-10T07:13:05,536   adding 'bhmm/output_models/outputmodel.py'
2021-07-10T07:13:05,538   adding 'bhmm/output_models/impl_c/__init__.py'
2021-07-10T07:13:05,569   adding 'bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:13:05,639   adding 'bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:13:05,643   adding 'bhmm/tests/__init__.py'
2021-07-10T07:13:05,645   adding 'bhmm/tests/test_bhmm.py'
2021-07-10T07:13:05,647   adding 'bhmm/tests/test_hidden.py'
2021-07-10T07:13:05,648   adding 'bhmm/tests/test_hmm.py'
2021-07-10T07:13:05,649   adding 'bhmm/tests/test_init.py'
2021-07-10T07:13:05,650   adding 'bhmm/tests/test_mlhmm.py'
2021-07-10T07:13:05,652   adding 'bhmm/tests/test_output_gaussian.py'
2021-07-10T07:13:05,653   adding 'bhmm/tests/test_testsystems.py'
2021-07-10T07:13:05,655   adding 'bhmm/tests/data/2well_P.dat'
2021-07-10T07:13:05,657   adding 'bhmm/tests/data/2well_energy.dat'
2021-07-10T07:13:05,733   adding 'bhmm/tests/data/2well_traj_100K.dat'
2021-07-10T07:13:05,737   adding 'bhmm/util/__init__.py'
2021-07-10T07:13:05,739   adding 'bhmm/util/analysis.py'
2021-07-10T07:13:05,740   adding 'bhmm/util/config.py'
2021-07-10T07:13:05,741   adding 'bhmm/util/logger.py'
2021-07-10T07:13:05,742   adding 'bhmm/util/statistics.py'
2021-07-10T07:13:05,744   adding 'bhmm/util/testsystems.py'
2021-07-10T07:13:05,746   adding 'bhmm/util/types.py'
2021-07-10T07:13:05,748   adding 'bhmm-0.5.0.dist-info/METADATA'
2021-07-10T07:13:05,749   adding 'bhmm-0.5.0.dist-info/WHEEL'
2021-07-10T07:13:05,750   adding 'bhmm-0.5.0.dist-info/pbr.json'
2021-07-10T07:13:05,751   adding 'bhmm-0.5.0.dist-info/top_level.txt'
2021-07-10T07:13:05,752   adding 'bhmm-0.5.0.dist-info/RECORD'
2021-07-10T07:13:05,762   removing build/bdist.linux-armv7l/wheel
2021-07-10T07:13:05,935   Building wheel for bhmm (setup.py): finished with status 'done'
2021-07-10T07:13:05,944   Created wheel for bhmm: filename=bhmm-0.5.0-cp39-cp39-linux_armv7l.whl size=524462 sha256=533312a4461b5d17a67d6fe03b2ac16c53804f87f2548b68d086f961cd0d038c
2021-07-10T07:13:05,945   Stored in directory: /tmp/pip-ephem-wheel-cache-h3ohkgpx/wheels/d7/8e/cd/d124e82397713c5df231b492c6ce0e2fc12670abccf8b91016
2021-07-10T07:13:05,955 Successfully built bhmm
2021-07-10T07:13:05,974 Removed build tracker: '/tmp/pip-req-tracker-pnr49p8u'