2021-07-10T07:26:10,046 Created temporary directory: /tmp/pip-ephem-wheel-cache-fjumsatw
2021-07-10T07:26:10,049 Created temporary directory: /tmp/pip-req-tracker-d92k5pc4
2021-07-10T07:26:10,049 Initialized build tracking at /tmp/pip-req-tracker-d92k5pc4
2021-07-10T07:26:10,049 Created build tracker: /tmp/pip-req-tracker-d92k5pc4
2021-07-10T07:26:10,049 Entered build tracker: /tmp/pip-req-tracker-d92k5pc4
2021-07-10T07:26:10,050 Created temporary directory: /tmp/pip-wheel-_krcrd6k
2021-07-10T07:26:10,082 1 location(s) to search for versions of bhmm:
2021-07-10T07:26:10,082 * https://pypi.org/simple/bhmm/
2021-07-10T07:26:10,083 Fetching project page and analyzing links: https://pypi.org/simple/bhmm/
2021-07-10T07:26:10,083 Getting page https://pypi.org/simple/bhmm/
2021-07-10T07:26:10,085 Found index url https://pypi.org/simple
2021-07-10T07:26:10,176   Found link https://files.pythonhosted.org/packages/61/56/3de716dfa04d42acf328f665889a2ac487421543ad38ad44f4e55f8155d6/bhmm-0.3.0.tar.gz#sha256=d84fd39fcfc0b933fb835cd4af69f61fd704347e01c5eb2a3e7ce6579c184122 (from https://pypi.org/simple/bhmm/), version: 0.3.0
2021-07-10T07:26:10,177   Found link https://files.pythonhosted.org/packages/b3/52/116bf9a87fb6d56bca3d8d0c87bef8597b43e6cf0a6f2bf4aca530e4ce7f/bhmm-0.4.2.tar.gz#sha256=1bc7a713bbda2c81878d0d798d51692fedfa18707543095e2b9584989cf432b3 (from https://pypi.org/simple/bhmm/), version: 0.4.2
2021-07-10T07:26:10,177   Found link https://files.pythonhosted.org/packages/ca/58/c0eb124efbdf18cb62675a16788ec84b541a4358ebf46e1add74284c9f02/bhmm-0.5.0.tar.gz#sha256=4c094c054646e8baf850699aab398d385a79cf51d91d15f715e6c5d69d74b198 (from https://pypi.org/simple/bhmm/), version: 0.5.0
2021-07-10T07:26:10,177   Found link https://files.pythonhosted.org/packages/91/b4/c01c15efdab2a542db8cae6d49ab860644eea174a3822685cef3a3ed93ac/bhmm-0.5.1.tar.gz#sha256=7bae6d51ddfc88c2cec84ce408a2792f91bfef353621798c597773b8daab487e (from https://pypi.org/simple/bhmm/), version: 0.5.1
2021-07-10T07:26:10,177   Found link https://files.pythonhosted.org/packages/14/17/9043b8dfb2d04ab7de09b3057d37c1385056d63702e4cca539b121e806e6/bhmm-0.5.2.tar.gz#sha256=c2848188a73e7da6735ac7a636f8892f2dd939a6148437cc8fd84c4d2f5b21fb (from https://pypi.org/simple/bhmm/), version: 0.5.2
2021-07-10T07:26:10,178   Found link https://files.pythonhosted.org/packages/ee/78/d607b2d74022a4146c5d1940f9e78ffaaabc55c1defdbe9ddcba92ba08a4/bhmm-0.5.3.tar.gz#sha256=77d4e4ad546537a0f0efd78b3180a7d0d0836e92d9d5efc698fcd7740da46d6f (from https://pypi.org/simple/bhmm/), version: 0.5.3
2021-07-10T07:26:10,178   Found link https://files.pythonhosted.org/packages/a0/16/4ab0903a8a3a9ae3337193221d223b8e2fe8701960b680018bbec5342a03/bhmm-0.6.tar.gz#sha256=a5b0609801d9a61cf36892f975c67294dc24ccef8d1906031c065ec286d56fae (from https://pypi.org/simple/bhmm/), version: 0.6
2021-07-10T07:26:10,178   Found link https://files.pythonhosted.org/packages/b9/6c/552b35b4765fadfcfe796b2b6d28fe38d622a28b74dd882f7980a4acb699/bhmm-0.6.1.tar.gz#sha256=eb5a1d93d7c46f6d2ffcb6901d2bdf3297dcbd4b8835a9da1cbd98c9567f265e (from https://pypi.org/simple/bhmm/), version: 0.6.1
2021-07-10T07:26:10,179   Found link https://files.pythonhosted.org/packages/10/9c/abea596a522277674836b8ec398a30092933826cffc04ad1823be0f06b5c/bhmm-0.6.2.tar.gz#sha256=c2709c101c0e3921aac992b7b24d279f24c1455313b4eae90da83b6332cfa464 (from https://pypi.org/simple/bhmm/), version: 0.6.2
2021-07-10T07:26:10,179   Found link https://files.pythonhosted.org/packages/ac/91/27b35bfc73cfe529ed9d4133b2fa20180ccaa2c6c9f55e49779f1319ecf0/bhmm-0.6.3.tar.gz#sha256=f7a920542a18e65debb894e4287990255e32306f026892fa3b82e902d45e5dd2 (from https://pypi.org/simple/bhmm/), version: 0.6.3
2021-07-10T07:26:10,179 Skipping link: not a file: https://pypi.org/simple/bhmm/
2021-07-10T07:26:10,198 Given no hashes to check 1 links for project 'bhmm': discarding no candidates
2021-07-10T07:26:10,216 Collecting bhmm==0.5.1
2021-07-10T07:26:10,218   Created temporary directory: /tmp/pip-unpack-pa83pu9_
2021-07-10T07:26:10,523   Downloading bhmm-0.5.1.tar.gz (280 kB)
2021-07-10T07:26:10,823   Added bhmm==0.5.1 from https://files.pythonhosted.org/packages/91/b4/c01c15efdab2a542db8cae6d49ab860644eea174a3822685cef3a3ed93ac/bhmm-0.5.1.tar.gz#sha256=7bae6d51ddfc88c2cec84ce408a2792f91bfef353621798c597773b8daab487e to build tracker '/tmp/pip-req-tracker-d92k5pc4'
2021-07-10T07:26:10,824     Running setup.py (path:/tmp/pip-wheel-_krcrd6k/bhmm_83e56a6854b341aaaff27578a2780c76/setup.py) egg_info for package bhmm
2021-07-10T07:26:10,825     Created temporary directory: /tmp/pip-pip-egg-info-7641atj5
2021-07-10T07:26:10,825     Running command python setup.py egg_info
2021-07-10T07:26:12,738     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-_krcrd6k/bhmm_83e56a6854b341aaaff27578a2780c76/bhmm/hidden/impl_c/hidden.pyx
2021-07-10T07:26:12,739       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:26:14,379     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-_krcrd6k/bhmm_83e56a6854b341aaaff27578a2780c76/bhmm/output_models/impl_c/discrete.pyx
2021-07-10T07:26:14,379       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:26:15,685     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-_krcrd6k/bhmm_83e56a6854b341aaaff27578a2780c76/bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T07:26:15,685       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:26:17,103     Compiling ./bhmm/hidden/impl_c/hidden.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:26:17,103     Compiling ./bhmm/output_models/impl_c/discrete.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:26:17,103     Compiling ./bhmm/output_models/impl_c/gaussian.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:26:17,104     [1/3] Cythonizing ./bhmm/hidden/impl_c/hidden.pyx
2021-07-10T07:26:17,104     [2/3] Cythonizing ./bhmm/output_models/impl_c/discrete.pyx
2021-07-10T07:26:17,104     [3/3] Cythonizing ./bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T07:26:17,259     running egg_info
2021-07-10T07:26:17,261     creating /tmp/pip-pip-egg-info-7641atj5/bhmm.egg-info
2021-07-10T07:26:17,262     writing /tmp/pip-pip-egg-info-7641atj5/bhmm.egg-info/PKG-INFO
2021-07-10T07:26:17,264     writing dependency_links to /tmp/pip-pip-egg-info-7641atj5/bhmm.egg-info/dependency_links.txt
2021-07-10T07:26:17,266     writing requirements to /tmp/pip-pip-egg-info-7641atj5/bhmm.egg-info/requires.txt
2021-07-10T07:26:17,267     writing top-level names to /tmp/pip-pip-egg-info-7641atj5/bhmm.egg-info/top_level.txt
2021-07-10T07:26:17,268     writing manifest file '/tmp/pip-pip-egg-info-7641atj5/bhmm.egg-info/SOURCES.txt'
2021-07-10T07:26:17,297     reading manifest file '/tmp/pip-pip-egg-info-7641atj5/bhmm.egg-info/SOURCES.txt'
2021-07-10T07:26:17,299     reading manifest template 'MANIFEST.in'
2021-07-10T07:26:17,407     writing manifest file '/tmp/pip-pip-egg-info-7641atj5/bhmm.egg-info/SOURCES.txt'
2021-07-10T07:26:17,635   Source in /tmp/pip-wheel-_krcrd6k/bhmm_83e56a6854b341aaaff27578a2780c76 has version 0.5.1, which satisfies requirement bhmm==0.5.1 from https://files.pythonhosted.org/packages/91/b4/c01c15efdab2a542db8cae6d49ab860644eea174a3822685cef3a3ed93ac/bhmm-0.5.1.tar.gz#sha256=7bae6d51ddfc88c2cec84ce408a2792f91bfef353621798c597773b8daab487e
2021-07-10T07:26:17,636   Removed bhmm==0.5.1 from https://files.pythonhosted.org/packages/91/b4/c01c15efdab2a542db8cae6d49ab860644eea174a3822685cef3a3ed93ac/bhmm-0.5.1.tar.gz#sha256=7bae6d51ddfc88c2cec84ce408a2792f91bfef353621798c597773b8daab487e from build tracker '/tmp/pip-req-tracker-d92k5pc4'
2021-07-10T07:26:17,640 Created temporary directory: /tmp/pip-unpack-95mu9iaw
2021-07-10T07:26:17,641 Building wheels for collected packages: bhmm
2021-07-10T07:26:17,644   Created temporary directory: /tmp/pip-wheel-o6mqwzd8
2021-07-10T07:26:17,645   Building wheel for bhmm (setup.py): started
2021-07-10T07:26:17,645   Destination directory: /tmp/pip-wheel-o6mqwzd8
2021-07-10T07:26:17,645   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_krcrd6k/bhmm_83e56a6854b341aaaff27578a2780c76/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_krcrd6k/bhmm_83e56a6854b341aaaff27578a2780c76/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-o6mqwzd8
2021-07-10T07:26:19,515   running bdist_wheel
2021-07-10T07:26:19,519   running build
2021-07-10T07:26:19,519   running build_py
2021-07-10T07:26:19,525   creating build
2021-07-10T07:26:19,526   creating build/lib.linux-armv7l-3.9
2021-07-10T07:26:19,526   creating build/lib.linux-armv7l-3.9/bhmm
2021-07-10T07:26:19,528   copying bhmm/version.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T07:26:19,529   copying bhmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T07:26:19,531   copying bhmm/api.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T07:26:19,534   creating build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T07:26:19,535   copying bhmm/init/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T07:26:19,537   copying bhmm/init/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T07:26:19,539   copying bhmm/init/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T07:26:19,542   creating build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:26:19,543   copying bhmm/tests/test_init.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:26:19,545   copying bhmm/tests/test_testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:26:19,547   copying bhmm/tests/test_mlhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:26:19,549   copying bhmm/tests/test_hidden.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:26:19,552   copying bhmm/tests/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:26:19,553   copying bhmm/tests/test_output_gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:26:19,555   copying bhmm/tests/test_bhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:26:19,558   copying bhmm/tests/test_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T07:26:19,561   creating build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T07:26:19,562   copying bhmm/hidden/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T07:26:19,564   copying bhmm/hidden/api.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T07:26:19,567   creating build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:26:19,568   copying bhmm/util/config.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:26:19,570   copying bhmm/util/types.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:26:19,573   copying bhmm/util/statistics.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:26:19,575   copying bhmm/util/testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:26:19,578   copying bhmm/util/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:26:19,580   copying bhmm/util/logger.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:26:19,582   copying bhmm/util/analysis.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T07:26:19,585   creating build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:26:19,586   copying bhmm/estimators/bayesian_sampling.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:26:19,589   copying bhmm/estimators/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:26:19,591   copying bhmm/estimators/_tmatrix_disconnected.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:26:19,593   copying bhmm/estimators/maximum_likelihood.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T07:26:19,597   creating build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:26:19,598   copying bhmm/output_models/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:26:19,601   copying bhmm/output_models/outputmodel.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:26:19,603   copying bhmm/output_models/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:26:19,605   copying bhmm/output_models/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:26:19,609   creating build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-10T07:26:19,610   copying bhmm/_external/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-10T07:26:19,613   creating build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:26:19,614   copying bhmm/hmm/generic_sampled_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:26:19,616   copying bhmm/hmm/gaussian_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:26:19,618   copying bhmm/hmm/generic_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:26:19,622   copying bhmm/hmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:26:19,623   copying bhmm/hmm/discrete_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T07:26:19,626   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T07:26:19,627   copying bhmm/hidden/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T07:26:19,629   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T07:26:19,630   copying bhmm/hidden/impl_python/hidden.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T07:26:19,633   copying bhmm/hidden/impl_python/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T07:26:19,635   creating build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T07:26:19,636   copying bhmm/output_models/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T07:26:19,639   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T07:26:19,639   copying bhmm/_external/sklearn/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T07:26:19,641   copying bhmm/_external/sklearn/base.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T07:26:19,643   copying bhmm/_external/sklearn/utils.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T07:26:19,646   creating build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T07:26:19,647   copying bhmm/_external/clustering/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T07:26:19,649   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T07:26:19,650   copying bhmm/_external/sklearn/mixture/gmm.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T07:26:19,654   copying bhmm/_external/sklearn/mixture/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T07:26:19,655   creating build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T07:26:19,656   copying bhmm/tests/data/2well_energy.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T07:26:19,658   copying bhmm/tests/data/2well_traj_100K.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T07:26:19,673   copying bhmm/tests/data/2well_P.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T07:26:19,683   running build_ext
2021-07-10T07:26:19,689   building 'bhmm.hidden.impl_c.hidden' extension
2021-07-10T07:26:19,689   creating build/temp.linux-armv7l-3.9
2021-07-10T07:26:19,689   creating build/temp.linux-armv7l-3.9/bhmm
2021-07-10T07:26:19,690   creating build/temp.linux-armv7l-3.9/bhmm/hidden
2021-07-10T07:26:19,691   creating build/temp.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T07:26:19,691   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/_hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o
2021-07-10T07:26:19,853   ./bhmm/hidden/impl_c/_hidden.c: In function ‘_compute_viterbi’:
2021-07-10T07:26:19,853   ./bhmm/hidden/impl_c/_hidden.c:207:26: warning: unused variable ‘p’ [-Wunused-variable]
2021-07-10T07:26:19,854     207 |     double sum, maxprod, p;
2021-07-10T07:26:19,854         |                          ^
2021-07-10T07:26:19,854   ./bhmm/hidden/impl_c/_hidden.c:207:17: warning: unused variable ‘maxprod’ [-Wunused-variable]
2021-07-10T07:26:19,854     207 |     double sum, maxprod, p;
2021-07-10T07:26:19,854         |                 ^~~~~~~
2021-07-10T07:26:20,319   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o
2021-07-10T07:26:20,722   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:20,723                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:20,723                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:20,723                    from ./bhmm/hidden/impl_c/hidden.c:638:
2021-07-10T07:26:20,723   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:20,723      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:20,723         |  ^~~~~~~
2021-07-10T07:26:27,026   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o -o build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so
2021-07-10T07:26:27,168   building 'bhmm.output_models.impl_c.discrete' extension
2021-07-10T07:26:27,169   creating build/temp.linux-armv7l-3.9/bhmm/output_models
2021-07-10T07:26:27,169   creating build/temp.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T07:26:27,170   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o
2021-07-10T07:26:27,225   ./bhmm/output_models/impl_c/_discrete.c: In function ‘_update_pout’:
2021-07-10T07:26:27,226   ./bhmm/output_models/impl_c/_discrete.c:22:12: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T07:26:27,226      22 |     int i, j, t, o;
2021-07-10T07:26:27,227         |            ^
2021-07-10T07:26:27,282   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o
2021-07-10T07:26:27,669   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:27,669                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:27,669                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:27,669                    from ./bhmm/output_models/impl_c/discrete.c:638:
2021-07-10T07:26:27,669   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:27,670      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:27,670         |  ^~~~~~~
2021-07-10T07:26:29,683   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so
2021-07-10T07:26:29,803   building 'bhmm.output_models.impl_c.gaussian' extension
2021-07-10T07:26:29,804   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o
2021-07-10T07:26:29,976   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o
2021-07-10T07:26:30,357   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:30,357                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:30,357                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:30,357                    from ./bhmm/output_models/impl_c/gaussian.c:638:
2021-07-10T07:26:30,357   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:30,358      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:30,358         |  ^~~~~~~
2021-07-10T07:26:35,152   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so
2021-07-10T07:26:35,283   building 'bhmm._external.clustering.kmeans_clustering' extension
2021-07-10T07:26:35,284   creating build/temp.linux-armv7l-3.9/bhmm/_external
2021-07-10T07:26:35,284   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T07:26:35,285   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering/src
2021-07-10T07:26:35,285   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/clustering.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o -std=c99
2021-07-10T07:26:35,665   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:35,665                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:35,665                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:35,666                    from ./bhmm/_external/clustering/include/clustering.h:34,
2021-07-10T07:26:35,666                    from ./bhmm/_external/clustering/src/clustering.c:27:
2021-07-10T07:26:35,666   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:35,666      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:35,666         |  ^~~~~~~
2021-07-10T07:26:35,862   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/kmeans.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -std=c99
2021-07-10T07:26:36,169   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:36,169                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:36,169                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:36,169                    from ./bhmm/_external/clustering/include/clustering.h:34,
2021-07-10T07:26:36,170                    from ./bhmm/_external/clustering/src/kmeans.c:27:
2021-07-10T07:26:36,170   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:36,170      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:36,170         |  ^~~~~~~
2021-07-10T07:26:36,193   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-10T07:26:36,193   ./bhmm/_external/clustering/src/kmeans.c:58:38: warning: variable ‘py_res’ set but not used [-Wunused-but-set-variable]
2021-07-10T07:26:36,193      58 |     PyObject *py_centers, *py_item, *py_res;
2021-07-10T07:26:36,194         |                                      ^~~~~~
2021-07-10T07:26:36,210   At top level:
2021-07-10T07:26:36,210   ./bhmm/_external/clustering/src/kmeans.c:526:1: warning: ‘error_out’ defined but not used [-Wunused-function]
2021-07-10T07:26:36,210     526 | error_out(PyObject *m) {
2021-07-10T07:26:36,210         | ^~~~~~~~~
2021-07-10T07:26:36,316   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-10T07:26:36,316   ./bhmm/_external/clustering/src/kmeans.c:178:50: warning: ‘closest_center_index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T07:26:36,316     178 |          new_centers[closest_center_index*dim+j] += chunk[i*dim+j];
2021-07-10T07:26:36,316         |                                                  ^~
2021-07-10T07:26:36,811   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -o build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so
2021-07-10T07:26:36,928   installing to build/bdist.linux-armv7l/wheel
2021-07-10T07:26:36,928   running install
2021-07-10T07:26:36,930   running install_lib
2021-07-10T07:26:36,934   creating build/bdist.linux-armv7l
2021-07-10T07:26:36,934   creating build/bdist.linux-armv7l/wheel
2021-07-10T07:26:36,936   creating build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T07:26:36,937   creating build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T07:26:36,938   copying build/lib.linux-armv7l-3.9/bhmm/init/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T07:26:36,940   copying build/lib.linux-armv7l-3.9/bhmm/init/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T07:26:36,942   copying build/lib.linux-armv7l-3.9/bhmm/init/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T07:26:36,945   creating build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:26:36,946   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_init.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:26:36,948   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:26:36,950   creating build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T07:26:36,951   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_energy.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T07:26:36,953   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_traj_100K.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T07:26:36,964   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_P.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T07:26:36,966   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_mlhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:26:36,968   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:26:36,971   copying build/lib.linux-armv7l-3.9/bhmm/tests/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:26:36,973   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_output_gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:26:36,974   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_bhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:26:36,977   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T07:26:36,979   copying build/lib.linux-armv7l-3.9/bhmm/version.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T07:26:36,981   creating build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T07:26:36,983   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T07:26:36,983   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T07:26:36,996   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T07:26:36,999   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T07:26:36,999   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T07:26:37,002   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T07:26:37,004   copying build/lib.linux-armv7l-3.9/bhmm/hidden/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T07:26:37,006   copying build/lib.linux-armv7l-3.9/bhmm/hidden/api.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T07:26:37,009   creating build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:26:37,010   copying build/lib.linux-armv7l-3.9/bhmm/util/config.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:26:37,012   copying build/lib.linux-armv7l-3.9/bhmm/util/types.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:26:37,014   copying build/lib.linux-armv7l-3.9/bhmm/util/statistics.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:26:37,017   copying build/lib.linux-armv7l-3.9/bhmm/util/testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:26:37,019   copying build/lib.linux-armv7l-3.9/bhmm/util/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:26:37,021   copying build/lib.linux-armv7l-3.9/bhmm/util/logger.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:26:37,023   copying build/lib.linux-armv7l-3.9/bhmm/util/analysis.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T07:26:37,025   copying build/lib.linux-armv7l-3.9/bhmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T07:26:37,028   creating build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:26:37,029   copying build/lib.linux-armv7l-3.9/bhmm/estimators/bayesian_sampling.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:26:37,031   copying build/lib.linux-armv7l-3.9/bhmm/estimators/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:26:37,033   copying build/lib.linux-armv7l-3.9/bhmm/estimators/_tmatrix_disconnected.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:26:37,035   copying build/lib.linux-armv7l-3.9/bhmm/estimators/maximum_likelihood.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T07:26:37,038   creating build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:26:37,039   copying build/lib.linux-armv7l-3.9/bhmm/output_models/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:26:37,042   creating build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T07:26:37,043   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T07:26:37,045   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T07:26:37,055   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T07:26:37,061   copying build/lib.linux-armv7l-3.9/bhmm/output_models/outputmodel.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:26:37,063   copying build/lib.linux-armv7l-3.9/bhmm/output_models/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:26:37,065   copying build/lib.linux-armv7l-3.9/bhmm/output_models/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T07:26:37,068   creating build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-10T07:26:37,069   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T07:26:37,070   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T07:26:37,072   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/base.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T07:26:37,075   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T07:26:37,076   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/gmm.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T07:26:37,079   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T07:26:37,081   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/utils.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T07:26:37,084   creating build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T07:26:37,085   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T07:26:37,086   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T07:26:37,090   copying build/lib.linux-armv7l-3.9/bhmm/_external/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-10T07:26:37,092   copying build/lib.linux-armv7l-3.9/bhmm/api.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T07:26:37,095   creating build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:26:37,096   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_sampled_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:26:37,099   copying build/lib.linux-armv7l-3.9/bhmm/hmm/gaussian_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:26:37,101   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:26:37,104   copying build/lib.linux-armv7l-3.9/bhmm/hmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:26:37,106   copying build/lib.linux-armv7l-3.9/bhmm/hmm/discrete_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T07:26:37,107   running install_egg_info
2021-07-10T07:26:37,128   running egg_info
2021-07-10T07:26:37,128   writing bhmm.egg-info/PKG-INFO
2021-07-10T07:26:37,130   writing dependency_links to bhmm.egg-info/dependency_links.txt
2021-07-10T07:26:37,132   writing requirements to bhmm.egg-info/requires.txt
2021-07-10T07:26:37,133   writing top-level names to bhmm.egg-info/top_level.txt
2021-07-10T07:26:37,155   reading manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T07:26:37,159   reading manifest template 'MANIFEST.in'
2021-07-10T07:26:37,267   writing manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T07:26:37,269   Copying bhmm.egg-info to build/bdist.linux-armv7l/wheel/bhmm-0.5.1-py3.9.egg-info
2021-07-10T07:26:37,283   running install_scripts
2021-07-10T07:26:37,332   creating build/bdist.linux-armv7l/wheel/bhmm-0.5.1.dist-info/WHEEL
2021-07-10T07:26:37,335   creating '/tmp/pip-wheel-o6mqwzd8/bhmm-0.5.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T07:26:37,337   adding 'bhmm/__init__.py'
2021-07-10T07:26:37,340   adding 'bhmm/api.py'
2021-07-10T07:26:37,341   adding 'bhmm/version.py'
2021-07-10T07:26:37,343   adding 'bhmm/_external/__init__.py'
2021-07-10T07:26:37,344   adding 'bhmm/_external/clustering/__init__.py'
2021-07-10T07:26:37,358   adding 'bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:26:37,360   adding 'bhmm/_external/sklearn/__init__.py'
2021-07-10T07:26:37,362   adding 'bhmm/_external/sklearn/base.py'
2021-07-10T07:26:37,364   adding 'bhmm/_external/sklearn/utils.py'
2021-07-10T07:26:37,365   adding 'bhmm/_external/sklearn/mixture/__init__.py'
2021-07-10T07:26:37,369   adding 'bhmm/_external/sklearn/mixture/gmm.py'
2021-07-10T07:26:37,371   adding 'bhmm/estimators/__init__.py'
2021-07-10T07:26:37,372   adding 'bhmm/estimators/_tmatrix_disconnected.py'
2021-07-10T07:26:37,374   adding 'bhmm/estimators/bayesian_sampling.py'
2021-07-10T07:26:37,376   adding 'bhmm/estimators/maximum_likelihood.py'
2021-07-10T07:26:37,378   adding 'bhmm/hidden/__init__.py'
2021-07-10T07:26:37,380   adding 'bhmm/hidden/api.py'
2021-07-10T07:26:37,382   adding 'bhmm/hidden/impl_c/__init__.py'
2021-07-10T07:26:37,471   adding 'bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:26:37,476   adding 'bhmm/hidden/impl_python/__init__.py'
2021-07-10T07:26:37,478   adding 'bhmm/hidden/impl_python/hidden.py'
2021-07-10T07:26:37,480   adding 'bhmm/hmm/__init__.py'
2021-07-10T07:26:37,481   adding 'bhmm/hmm/discrete_hmm.py'
2021-07-10T07:26:37,483   adding 'bhmm/hmm/gaussian_hmm.py'
2021-07-10T07:26:37,485   adding 'bhmm/hmm/generic_hmm.py'
2021-07-10T07:26:37,487   adding 'bhmm/hmm/generic_sampled_hmm.py'
2021-07-10T07:26:37,489   adding 'bhmm/init/__init__.py'
2021-07-10T07:26:37,490   adding 'bhmm/init/discrete.py'
2021-07-10T07:26:37,491   adding 'bhmm/init/gaussian.py'
2021-07-10T07:26:37,493   adding 'bhmm/output_models/__init__.py'
2021-07-10T07:26:37,495   adding 'bhmm/output_models/discrete.py'
2021-07-10T07:26:37,497   adding 'bhmm/output_models/gaussian.py'
2021-07-10T07:26:37,499   adding 'bhmm/output_models/outputmodel.py'
2021-07-10T07:26:37,500   adding 'bhmm/output_models/impl_c/__init__.py'
2021-07-10T07:26:37,532   adding 'bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:26:37,603   adding 'bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:26:37,607   adding 'bhmm/tests/__init__.py'
2021-07-10T07:26:37,608   adding 'bhmm/tests/test_bhmm.py'
2021-07-10T07:26:37,610   adding 'bhmm/tests/test_hidden.py'
2021-07-10T07:26:37,611   adding 'bhmm/tests/test_hmm.py'
2021-07-10T07:26:37,613   adding 'bhmm/tests/test_init.py'
2021-07-10T07:26:37,614   adding 'bhmm/tests/test_mlhmm.py'
2021-07-10T07:26:37,615   adding 'bhmm/tests/test_output_gaussian.py'
2021-07-10T07:26:37,616   adding 'bhmm/tests/test_testsystems.py'
2021-07-10T07:26:37,619   adding 'bhmm/tests/data/2well_P.dat'
2021-07-10T07:26:37,620   adding 'bhmm/tests/data/2well_energy.dat'
2021-07-10T07:26:37,694   adding 'bhmm/tests/data/2well_traj_100K.dat'
2021-07-10T07:26:37,699   adding 'bhmm/util/__init__.py'
2021-07-10T07:26:37,700   adding 'bhmm/util/analysis.py'
2021-07-10T07:26:37,701   adding 'bhmm/util/config.py'
2021-07-10T07:26:37,702   adding 'bhmm/util/logger.py'
2021-07-10T07:26:37,704   adding 'bhmm/util/statistics.py'
2021-07-10T07:26:37,706   adding 'bhmm/util/testsystems.py'
2021-07-10T07:26:37,707   adding 'bhmm/util/types.py'
2021-07-10T07:26:37,710   adding 'bhmm-0.5.1.dist-info/METADATA'
2021-07-10T07:26:37,711   adding 'bhmm-0.5.1.dist-info/WHEEL'
2021-07-10T07:26:37,712   adding 'bhmm-0.5.1.dist-info/pbr.json'
2021-07-10T07:26:37,712   adding 'bhmm-0.5.1.dist-info/top_level.txt'
2021-07-10T07:26:37,714   adding 'bhmm-0.5.1.dist-info/RECORD'
2021-07-10T07:26:37,723   removing build/bdist.linux-armv7l/wheel
2021-07-10T07:26:37,890   Building wheel for bhmm (setup.py): finished with status 'done'
2021-07-10T07:26:37,898   Created wheel for bhmm: filename=bhmm-0.5.1-cp39-cp39-linux_armv7l.whl size=524459 sha256=49ea7b84b8534ac5b9669a6983880c95e89bfe4f9316715e150ae93cc642f219
2021-07-10T07:26:37,899   Stored in directory: /tmp/pip-ephem-wheel-cache-fjumsatw/wheels/4e/79/fe/b36d30dbde1793f1cc1213328e0c0e7f03a780c6d05026e2b8
2021-07-10T07:26:37,911 Successfully built bhmm
2021-07-10T07:26:37,931 Removed build tracker: '/tmp/pip-req-tracker-d92k5pc4'