2021-07-10T07:26:09,912 Created temporary directory: /tmp/pip-ephem-wheel-cache-n0n4uwvx
2021-07-10T07:26:09,915 Created temporary directory: /tmp/pip-req-tracker-9pwgk7lb
2021-07-10T07:26:09,915 Initialized build tracking at /tmp/pip-req-tracker-9pwgk7lb
2021-07-10T07:26:09,915 Created build tracker: /tmp/pip-req-tracker-9pwgk7lb
2021-07-10T07:26:09,916 Entered build tracker: /tmp/pip-req-tracker-9pwgk7lb
2021-07-10T07:26:09,916 Created temporary directory: /tmp/pip-wheel-4vrneqv5
2021-07-10T07:26:09,948 1 location(s) to search for versions of msmtools:
2021-07-10T07:26:09,948 * https://pypi.org/simple/msmtools/
2021-07-10T07:26:09,948 Fetching project page and analyzing links: https://pypi.org/simple/msmtools/
2021-07-10T07:26:09,949 Getting page https://pypi.org/simple/msmtools/
2021-07-10T07:26:09,950 Found index url https://pypi.org/simple
2021-07-10T07:26:10,044   Found link https://files.pythonhosted.org/packages/06/eb/7ea49c965c6d6cc5d49cf7619eb365b9f80f92d449fa2d83286d57c23b09/msmtools-1.0.tar.gz#sha256=cd2cfbb47327eb24d4855b7585868fbbc3be14c824a2eaa3fa0c2a7e76310595 (from https://pypi.org/simple/msmtools/), version: 1.0
2021-07-10T07:26:10,044   Found link https://files.pythonhosted.org/packages/c4/ca/50da8c42c7aad77f9d8f5c5cf1aa0f8812c01b78ea07c4719daca73a90fb/msmtools-1.0.1.tar.gz#sha256=b6704dea0bb816e3aca0be871f15199a18964a799854a000135ffe95a13ea0d6 (from https://pypi.org/simple/msmtools/), version: 1.0.1
2021-07-10T07:26:10,045   Found link https://files.pythonhosted.org/packages/f7/e7/8fad6dccdaf5c35379a3d670c5b17546fcf5e9b2c7feec293dec0e9fc935/msmtools-1.0.2.tar.gz#sha256=f5f9cb4a2b10f7d7f2d5b7cf520703011e6d6f7961a858c5a88b82f0ad2c494a (from https://pypi.org/simple/msmtools/), version: 1.0.2
2021-07-10T07:26:10,045   Found link https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 (from https://pypi.org/simple/msmtools/), version: 1.0.3
2021-07-10T07:26:10,045   Found link https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 (from https://pypi.org/simple/msmtools/), version: 1.0.4
2021-07-10T07:26:10,046   Found link https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 (from https://pypi.org/simple/msmtools/), version: 1.1
2021-07-10T07:26:10,046   Found link https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b (from https://pypi.org/simple/msmtools/), version: 1.1.1
2021-07-10T07:26:10,046   Found link https://files.pythonhosted.org/packages/d8/83/2de718bea8c6ffd64287549e1f443695c9c7eae576e4ec8b695748735bcc/msmtools-1.1.2.tar.gz#sha256=1ae40e839dff551575e38bb8c061073a2f1e69279e53ed62f66c88006a1f0a4f (from https://pypi.org/simple/msmtools/), version: 1.1.2
2021-07-10T07:26:10,047   Found link https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b (from https://pypi.org/simple/msmtools/), version: 1.1.3
2021-07-10T07:26:10,047   Found link https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 (from https://pypi.org/simple/msmtools/), version: 1.1.4
2021-07-10T07:26:10,047   Found link https://files.pythonhosted.org/packages/5e/a2/42d30177e9f8b9071a5cf17c6cd0a75b9b245d708fc626b015599308a898/msmtools-1.2.tar.gz#sha256=eb509f9b2bebd5a07896ec563b14df3ebee2b9871730f5ac87e1ab3179c8c6c4 (from https://pypi.org/simple/msmtools/), version: 1.2
2021-07-10T07:26:10,047   Found link https://files.pythonhosted.org/packages/c5/bb/79aa3617eed8eaea3c2639d172929079b680e1904d4e19b50d35612c5db3/msmtools-1.2.1.tar.gz#sha256=7282cec96360372e8440146dfe27848273bc3d83d18806ea56e3986a14d5bdec (from https://pypi.org/simple/msmtools/), version: 1.2.1
2021-07-10T07:26:10,048   Found link https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 (from https://pypi.org/simple/msmtools/), version: 1.2.2
2021-07-10T07:26:10,048   Found link https://files.pythonhosted.org/packages/53/84/416bd9c21c408ef59953804c1b4ec805950adfd89102c43c54685b6f3cdf/msmtools-1.2.3.tar.gz#sha256=3f3c39a4558887575dd2bfdb0711b6d073446cb0b8767eafda16bfe0b92409c9 (from https://pypi.org/simple/msmtools/), version: 1.2.3
2021-07-10T07:26:10,048   Found link https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b (from https://pypi.org/simple/msmtools/), version: 1.2.4
2021-07-10T07:26:10,049   Found link https://files.pythonhosted.org/packages/9e/95/ac5dfa19f13379490dbef764a994c6d564b32de2d68e712042af8ff84d2a/msmtools-1.2.5.tar.gz#sha256=e07b73ad9e4e8ef8aca82e6b5bb55f57f8400a65fb2fd656b521f72237a7310a (from https://pypi.org/simple/msmtools/), version: 1.2.5
2021-07-10T07:26:10,049   Found link https://files.pythonhosted.org/packages/e4/1f/366f5c37c1231f87b6789f904e4e68ae47b4b910119da9ec5905e9fa1387/msmtools-1.2.6.tar.gz#sha256=2bfa6c02fff9ed9433c90d7ddc7860a8e2cf881fc67ec1ea5ef93f34a7e03541 (from https://pypi.org/simple/msmtools/), version: 1.2.6
2021-07-10T07:26:10,049 Skipping link: not a file: https://pypi.org/simple/msmtools/
2021-07-10T07:26:10,069 Given no hashes to check 1 links for project 'msmtools': discarding no candidates
2021-07-10T07:26:10,087 Collecting msmtools==1.0.4
2021-07-10T07:26:10,089   Created temporary directory: /tmp/pip-unpack-d405mp24
2021-07-10T07:26:10,651   Downloading msmtools-1.0.4.tar.gz (587 kB)
2021-07-10T07:26:11,275   Added msmtools==1.0.4 from https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 to build tracker '/tmp/pip-req-tracker-9pwgk7lb'
2021-07-10T07:26:11,276     Running setup.py (path:/tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/setup.py) egg_info for package msmtools
2021-07-10T07:26:11,276     Created temporary directory: /tmp/pip-pip-egg-info-m13udhvh
2021-07-10T07:26:11,277     Running command python setup.py egg_info
2021-07-10T07:26:12,165     running egg_info
2021-07-10T07:26:12,167     creating /tmp/pip-pip-egg-info-m13udhvh/msmtools.egg-info
2021-07-10T07:26:12,168     writing /tmp/pip-pip-egg-info-m13udhvh/msmtools.egg-info/PKG-INFO
2021-07-10T07:26:12,170     writing dependency_links to /tmp/pip-pip-egg-info-m13udhvh/msmtools.egg-info/dependency_links.txt
2021-07-10T07:26:12,172     writing requirements to /tmp/pip-pip-egg-info-m13udhvh/msmtools.egg-info/requires.txt
2021-07-10T07:26:12,614     creating /tmp/hasfunction-qd3_ndoo/tmp
2021-07-10T07:26:12,614     creating /tmp/hasfunction-qd3_ndoo/tmp/hasfunction-qd3_ndoo
2021-07-10T07:26:12,615     cc -c /tmp/hasfunction-qd3_ndoo/funcname.c -o /tmp/hasfunction-qd3_ndoo/tmp/hasfunction-qd3_ndoo/funcname.o
2021-07-10T07:26:12,703     cc /tmp/hasfunction-qd3_ndoo/tmp/hasfunction-qd3_ndoo/funcname.o -o /tmp/hasfunction-qd3_ndoo/a.out
2021-07-10T07:26:12,818     creating /tmp/hasfunction-3r05adr7/tmp
2021-07-10T07:26:12,819     creating /tmp/hasfunction-3r05adr7/tmp/hasfunction-3r05adr7
2021-07-10T07:26:12,819     cc -c /tmp/hasfunction-3r05adr7/funcname.c -o /tmp/hasfunction-3r05adr7/tmp/hasfunction-3r05adr7/funcname.o
2021-07-10T07:26:12,906     cc /tmp/hasfunction-3r05adr7/tmp/hasfunction-3r05adr7/funcname.o -lgomp -o /tmp/hasfunction-3r05adr7/a.out
2021-07-10T07:26:13,740     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/msmtools/estimation/dense/mle_trev_given_pi.pyx
2021-07-10T07:26:13,741       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:26:15,134     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/msmtools/estimation/dense/sampler_rev.pyx
2021-07-10T07:26:15,134       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:26:16,813     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/msmtools/estimation/dense/sampler_revpi.pyx
2021-07-10T07:26:16,813       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:26:18,513     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/msmtools/estimation/sparse/mle_trev.pyx
2021-07-10T07:26:18,514       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:26:19,958     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/msmtools/estimation/sparse/mle_trev_given_pi.pyx
2021-07-10T07:26:19,958       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:26:21,329     Compiling msmtools/estimation/dense/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:26:21,330     Compiling msmtools/estimation/sparse/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:26:21,330     Compiling msmtools/estimation/sparse/mle_trev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:26:21,330     Compiling msmtools/estimation/dense/sampler_rev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:26:21,330     Compiling msmtools/estimation/dense/sampler_revpi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:26:21,330     [1/5] Cythonizing msmtools/estimation/dense/mle_trev_given_pi.pyx
2021-07-10T07:26:21,331     [2/5] Cythonizing msmtools/estimation/dense/sampler_rev.pyx
2021-07-10T07:26:21,331     [3/5] Cythonizing msmtools/estimation/dense/sampler_revpi.pyx
2021-07-10T07:26:21,331     [4/5] Cythonizing msmtools/estimation/sparse/mle_trev.pyx
2021-07-10T07:26:21,332     [5/5] Cythonizing msmtools/estimation/sparse/mle_trev_given_pi.pyx
2021-07-10T07:26:21,332     /tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/setup.py:159: UserWarning: enabled openmp
2021-07-10T07:26:21,332       warnings.warn('enabled openmp')
2021-07-10T07:26:21,332     writing top-level names to /tmp/pip-pip-egg-info-m13udhvh/msmtools.egg-info/top_level.txt
2021-07-10T07:26:21,333     writing manifest file '/tmp/pip-pip-egg-info-m13udhvh/msmtools.egg-info/SOURCES.txt'
2021-07-10T07:26:21,644     reading manifest file '/tmp/pip-pip-egg-info-m13udhvh/msmtools.egg-info/SOURCES.txt'
2021-07-10T07:26:21,646     reading manifest template 'MANIFEST.in'
2021-07-10T07:26:21,734     warning: no files found matching 'tests/data/*' under directory 'msmtools'
2021-07-10T07:26:21,778     warning: no files found matching 'testfiles/' under directory 'msmtools'
2021-07-10T07:26:21,982     adding license file 'LICENSE.txt'
2021-07-10T07:26:21,991     writing manifest file '/tmp/pip-pip-egg-info-m13udhvh/msmtools.egg-info/SOURCES.txt'
2021-07-10T07:26:22,210   Source in /tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937 has version 1.0.4, which satisfies requirement msmtools==1.0.4 from https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969
2021-07-10T07:26:22,211   Removed msmtools==1.0.4 from https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 from build tracker '/tmp/pip-req-tracker-9pwgk7lb'
2021-07-10T07:26:22,215 Created temporary directory: /tmp/pip-unpack-0m_eo_w2
2021-07-10T07:26:22,216 Building wheels for collected packages: msmtools
2021-07-10T07:26:22,220   Created temporary directory: /tmp/pip-wheel-c_4oswwo
2021-07-10T07:26:22,221   Building wheel for msmtools (setup.py): started
2021-07-10T07:26:22,221   Destination directory: /tmp/pip-wheel-c_4oswwo
2021-07-10T07:26:22,221   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-c_4oswwo
2021-07-10T07:26:23,122   running bdist_wheel
2021-07-10T07:26:23,306   creating /tmp/hasfunction-kudtlbwb/tmp
2021-07-10T07:26:23,306   creating /tmp/hasfunction-kudtlbwb/tmp/hasfunction-kudtlbwb
2021-07-10T07:26:23,307   cc -c /tmp/hasfunction-kudtlbwb/funcname.c -o /tmp/hasfunction-kudtlbwb/tmp/hasfunction-kudtlbwb/funcname.o
2021-07-10T07:26:23,391   cc /tmp/hasfunction-kudtlbwb/tmp/hasfunction-kudtlbwb/funcname.o -o /tmp/hasfunction-kudtlbwb/a.out
2021-07-10T07:26:23,509   creating /tmp/hasfunction-chebhl6t/tmp
2021-07-10T07:26:23,510   creating /tmp/hasfunction-chebhl6t/tmp/hasfunction-chebhl6t
2021-07-10T07:26:23,511   cc -c /tmp/hasfunction-chebhl6t/funcname.c -o /tmp/hasfunction-chebhl6t/tmp/hasfunction-chebhl6t/funcname.o
2021-07-10T07:26:23,596   cc /tmp/hasfunction-chebhl6t/tmp/hasfunction-chebhl6t/funcname.o -lgomp -o /tmp/hasfunction-chebhl6t/a.out
2021-07-10T07:26:24,241   /tmp/pip-wheel-4vrneqv5/msmtools_4b83ff031f594c93a26266738ee39937/setup.py:159: UserWarning: enabled openmp
2021-07-10T07:26:24,242     warnings.warn('enabled openmp')
2021-07-10T07:26:24,516   running build
2021-07-10T07:26:24,516   running build_py
2021-07-10T07:26:24,522   creating build
2021-07-10T07:26:24,523   creating build/lib.linux-armv7l-3.9
2021-07-10T07:26:24,524   creating build/lib.linux-armv7l-3.9/msmtools
2021-07-10T07:26:24,525   copying msmtools/_version.py -> build/lib.linux-armv7l-3.9/msmtools
2021-07-10T07:26:24,527   copying msmtools/__init__.py -> build/lib.linux-armv7l-3.9/msmtools
2021-07-10T07:26:24,530   creating build/lib.linux-armv7l-3.9/msmtools/dtraj
2021-07-10T07:26:24,531   copying msmtools/dtraj/api.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj
2021-07-10T07:26:24,533   copying msmtools/dtraj/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj
2021-07-10T07:26:24,536   creating build/lib.linux-armv7l-3.9/msmtools/generation
2021-07-10T07:26:24,537   copying msmtools/generation/api.py -> build/lib.linux-armv7l-3.9/msmtools/generation
2021-07-10T07:26:24,540   copying msmtools/generation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation
2021-07-10T07:26:24,543   creating build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:26:24,544   copying msmtools/util/annotators.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:26:24,547   copying msmtools/util/types.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:26:24,550   copying msmtools/util/statistics.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:26:24,553   copying msmtools/util/exceptions.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:26:24,555   copying msmtools/util/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:26:24,557   copying msmtools/util/numeric.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:26:24,561   creating build/lib.linux-armv7l-3.9/msmtools/estimation
2021-07-10T07:26:24,562   copying msmtools/estimation/api.py -> build/lib.linux-armv7l-3.9/msmtools/estimation
2021-07-10T07:26:24,568   copying msmtools/estimation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation
2021-07-10T07:26:24,571   creating build/lib.linux-armv7l-3.9/msmtools/analysis
2021-07-10T07:26:24,572   copying msmtools/analysis/api.py -> build/lib.linux-armv7l-3.9/msmtools/analysis
2021-07-10T07:26:24,576   copying msmtools/analysis/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis
2021-07-10T07:26:24,579   creating build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:26:24,580   copying msmtools/flux/api.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:26:24,584   copying msmtools/flux/reactive_flux_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:26:24,587   copying msmtools/flux/reactive_flux.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:26:24,590   copying msmtools/flux/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:26:24,593   creating build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T07:26:24,595   copying msmtools/util/matrix/matrix.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T07:26:24,597   copying msmtools/util/matrix/matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T07:26:24,601   copying msmtools/util/matrix/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T07:26:24,605   creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,607   copying msmtools/estimation/dense/covariance.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,610   copying msmtools/estimation/dense/sampler_nrev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,612   copying msmtools/estimation/dense/tmatrix_sampler.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,615   copying msmtools/estimation/dense/bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,618   copying msmtools/estimation/dense/covariance_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,620   copying msmtools/estimation/dense/tmatrix_sampler_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,623   copying msmtools/estimation/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,626   copying msmtools/estimation/dense/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,630   creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,632   copying msmtools/estimation/sparse/connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,635   copying msmtools/estimation/sparse/effective_counts.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,638   copying msmtools/estimation/sparse/transition_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,641   copying msmtools/estimation/sparse/prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,644   copying msmtools/estimation/sparse/count_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,648   copying msmtools/estimation/sparse/connectivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,650   copying msmtools/estimation/sparse/likelihood_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,653   copying msmtools/estimation/sparse/prior_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,655   copying msmtools/estimation/sparse/likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,658   copying msmtools/estimation/sparse/count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,661   copying msmtools/estimation/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,663   copying msmtools/estimation/sparse/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:24,667   creating build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,668   copying msmtools/analysis/dense/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,671   copying msmtools/analysis/dense/correlations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,674   copying msmtools/analysis/dense/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,677   copying msmtools/analysis/dense/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,679   copying msmtools/analysis/dense/sensitivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,682   copying msmtools/analysis/dense/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,685   copying msmtools/analysis/dense/pcca.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,690   copying msmtools/analysis/dense/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,693   copying msmtools/analysis/dense/hitting_probability.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,695   copying msmtools/analysis/dense/correlations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,698   copying msmtools/analysis/dense/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,702   copying msmtools/analysis/dense/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,705   copying msmtools/analysis/dense/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,708   copying msmtools/analysis/dense/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,710   copying msmtools/analysis/dense/sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,714   copying msmtools/analysis/dense/pcca_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,717   copying msmtools/analysis/dense/hitting_probability_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,719   copying msmtools/analysis/dense/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,722   copying msmtools/analysis/dense/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,724   copying msmtools/analysis/dense/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,727   copying msmtools/analysis/dense/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,730   copying msmtools/analysis/dense/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,733   copying msmtools/analysis/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,736   copying msmtools/analysis/dense/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:26:24,740   creating build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,742   copying msmtools/analysis/sparse/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,745   copying msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,748   copying msmtools/analysis/sparse/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,750   copying msmtools/analysis/sparse/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,753   copying msmtools/analysis/sparse/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,756   copying msmtools/analysis/sparse/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,759   copying msmtools/analysis/sparse/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,762   copying msmtools/analysis/sparse/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,765   copying msmtools/analysis/sparse/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,768   copying msmtools/analysis/sparse/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,770   copying msmtools/analysis/sparse/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,773   copying msmtools/analysis/sparse/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,776   copying msmtools/analysis/sparse/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,779   copying msmtools/analysis/sparse/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,782   copying msmtools/analysis/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,785   copying msmtools/analysis/sparse/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:26:24,789   creating build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T07:26:24,790   copying msmtools/flux/dense/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T07:26:24,794   copying msmtools/flux/dense/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T07:26:24,797   copying msmtools/flux/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T07:26:24,800   creating build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:26:24,801   copying msmtools/flux/sparse/pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:26:24,805   copying msmtools/flux/sparse/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:26:24,808   copying msmtools/flux/sparse/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:26:24,810   copying msmtools/flux/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:26:24,826   running build_ext
2021-07-10T07:26:24,830   building 'msmtools.estimation.dense.mle_trev_given_pi' extension
2021-07-10T07:26:24,831   creating build/temp.linux-armv7l-3.9
2021-07-10T07:26:24,832   creating build/temp.linux-armv7l-3.9/msmtools
2021-07-10T07:26:24,833   creating build/temp.linux-armv7l-3.9/msmtools/estimation
2021-07-10T07:26:24,834   creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:26:24,835   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o -fopenmp
2021-07-10T07:26:25,237   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -fopenmp
2021-07-10T07:26:25,643   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:25,643                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:25,643                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:25,643                    from msmtools/estimation/dense/mle_trev_given_pi.c:632:
2021-07-10T07:26:25,643   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:25,644      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:25,644         |  ^~~~~~~
2021-07-10T07:26:28,605   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:26:28,745   building 'msmtools.estimation.sparse.mle_trev_given_pi' extension
2021-07-10T07:26:28,746   creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:26:28,746   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o -fopenmp
2021-07-10T07:26:29,121   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -fopenmp
2021-07-10T07:26:29,523   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:29,523                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:29,523                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:29,523                    from msmtools/estimation/sparse/mle_trev_given_pi.c:633:
2021-07-10T07:26:29,524   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:29,524      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:29,524         |  ^~~~~~~
2021-07-10T07:26:33,834   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:26:34,050   building 'msmtools.estimation.sparse.mle_trev' extension
2021-07-10T07:26:34,051   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o -fopenmp
2021-07-10T07:26:34,627   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -fopenmp
2021-07-10T07:26:35,016   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:35,017                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:35,017                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:35,017                    from msmtools/estimation/sparse/mle_trev.c:632:
2021-07-10T07:26:35,017   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:35,017      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:35,017         |  ^~~~~~~
2021-07-10T07:26:38,652   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:26:38,791   building 'msmtools.estimation.dense.sampler_rev' extension
2021-07-10T07:26:38,791   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp
2021-07-10T07:26:38,944   msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’:
2021-07-10T07:26:38,944   msmtools/estimation/dense/_ranlib.c:1549:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
2021-07-10T07:26:38,945    1549 |   int m;
2021-07-10T07:26:38,945         |       ^
2021-07-10T07:26:40,401   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp
2021-07-10T07:26:40,516   msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’:
2021-07-10T07:26:40,516   msmtools/estimation/dense/_rnglib.c:449:7: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T07:26:40,516     449 |   int j;
2021-07-10T07:26:40,516         |       ^
2021-07-10T07:26:40,523   msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’:
2021-07-10T07:26:40,524   msmtools/estimation/dense/_rnglib.c:1610:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T07:26:40,524    1610 |   int i;
2021-07-10T07:26:40,524         |       ^
2021-07-10T07:26:40,525   msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’:
2021-07-10T07:26:40,526   msmtools/estimation/dense/_rnglib.c:1709:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T07:26:40,527    1709 |   int i;
2021-07-10T07:26:40,527         |       ^
2021-07-10T07:26:41,044   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o -fopenmp
2021-07-10T07:26:41,654   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -fopenmp
2021-07-10T07:26:42,032   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:42,032                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:42,032                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:42,033                    from msmtools/estimation/dense/sampler_rev.c:634:
2021-07-10T07:26:42,033   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:42,033      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:42,033         |  ^~~~~~~
2021-07-10T07:26:50,091   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:26:50,259   building 'msmtools.estimation.dense.sampler_revpi' extension
2021-07-10T07:26:50,260   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp
2021-07-10T07:26:50,424   msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’:
2021-07-10T07:26:50,424   msmtools/estimation/dense/_ranlib.c:1549:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
2021-07-10T07:26:50,424    1549 |   int m;
2021-07-10T07:26:50,424         |       ^
2021-07-10T07:26:51,887   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp
2021-07-10T07:26:51,999   msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’:
2021-07-10T07:26:52,000   msmtools/estimation/dense/_rnglib.c:449:7: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T07:26:52,000     449 |   int j;
2021-07-10T07:26:52,000         |       ^
2021-07-10T07:26:52,007   msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’:
2021-07-10T07:26:52,008   msmtools/estimation/dense/_rnglib.c:1610:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T07:26:52,008    1610 |   int i;
2021-07-10T07:26:52,008         |       ^
2021-07-10T07:26:52,009   msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’:
2021-07-10T07:26:52,010   msmtools/estimation/dense/_rnglib.c:1709:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T07:26:52,010    1709 |   int i;
2021-07-10T07:26:52,010         |       ^
2021-07-10T07:26:52,534   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o -fopenmp
2021-07-10T07:26:52,977   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -fopenmp
2021-07-10T07:26:53,364   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:26:53,364                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:26:53,364                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:26:53,364                    from msmtools/estimation/dense/sampler_revpi.c:634:
2021-07-10T07:26:53,365   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:26:53,365      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:26:53,365         |  ^~~~~~~
2021-07-10T07:27:07,065   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:27:07,255   installing to build/bdist.linux-armv7l/wheel
2021-07-10T07:27:07,255   running install
2021-07-10T07:27:07,257   running install_lib
2021-07-10T07:27:07,262   creating build/bdist.linux-armv7l
2021-07-10T07:27:07,263   creating build/bdist.linux-armv7l/wheel
2021-07-10T07:27:07,266   creating build/bdist.linux-armv7l/wheel/msmtools
2021-07-10T07:27:07,268   creating build/bdist.linux-armv7l/wheel/msmtools/dtraj
2021-07-10T07:27:07,269   copying build/lib.linux-armv7l-3.9/msmtools/dtraj/api.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj
2021-07-10T07:27:07,274   copying build/lib.linux-armv7l-3.9/msmtools/dtraj/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj
2021-07-10T07:27:07,277   creating build/bdist.linux-armv7l/wheel/msmtools/generation
2021-07-10T07:27:07,279   copying build/lib.linux-armv7l-3.9/msmtools/generation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/generation
2021-07-10T07:27:07,282   copying build/lib.linux-armv7l-3.9/msmtools/generation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation
2021-07-10T07:27:07,285   creating build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:27:07,287   copying build/lib.linux-armv7l-3.9/msmtools/util/annotators.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:27:07,291   creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T07:27:07,292   copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T07:27:07,295   copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T07:27:07,299   copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T07:27:07,301   copying build/lib.linux-armv7l-3.9/msmtools/util/types.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:27:07,305   copying build/lib.linux-armv7l-3.9/msmtools/util/statistics.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:27:07,308   copying build/lib.linux-armv7l-3.9/msmtools/util/exceptions.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:27:07,311   copying build/lib.linux-armv7l-3.9/msmtools/util/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:27:07,313   copying build/lib.linux-armv7l-3.9/msmtools/util/numeric.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:27:07,316   creating build/bdist.linux-armv7l/wheel/msmtools/estimation
2021-07-10T07:27:07,318   creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,320   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,323   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_nrev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,325   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,350   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,364   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,367   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,370   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,408   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,411   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,414   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,417   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:27:07,421   copying build/lib.linux-armv7l-3.9/msmtools/estimation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation
2021-07-10T07:27:07,426   creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,427   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,432   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,442   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/effective_counts.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,445   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,448   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,458   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,460   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,464   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,467   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,470   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,472   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,474   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,478   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,480   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:27:07,483   copying build/lib.linux-armv7l-3.9/msmtools/estimation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation
2021-07-10T07:27:07,485   copying build/lib.linux-armv7l-3.9/msmtools/_version.py -> build/bdist.linux-armv7l/wheel/msmtools
2021-07-10T07:27:07,488   creating build/bdist.linux-armv7l/wheel/msmtools/analysis
2021-07-10T07:27:07,490   creating build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,492   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,495   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,498   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,501   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,506   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,509   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,511   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,515   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,518   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,520   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,524   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,528   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,531   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,534   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,536   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,540   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,543   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,545   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,548   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,551   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,554   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,557   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,560   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,563   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:27:07,565   copying build/lib.linux-armv7l-3.9/msmtools/analysis/api.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis
2021-07-10T07:27:07,570   creating build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,572   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,575   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,579   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,581   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,584   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,587   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,590   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,593   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,596   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,599   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,601   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,604   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,608   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,611   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,613   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,615   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:27:07,619   copying build/lib.linux-armv7l-3.9/msmtools/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis
2021-07-10T07:27:07,622   creating build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:27:07,624   creating build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T07:27:07,625   copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T07:27:07,628   copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T07:27:07,631   copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T07:27:07,633   copying build/lib.linux-armv7l-3.9/msmtools/flux/api.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:27:07,637   copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:27:07,640   creating build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:27:07,642   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:27:07,645   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:27:07,648   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:27:07,650   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:27:07,653   copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:27:07,656   copying build/lib.linux-armv7l-3.9/msmtools/flux/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:27:07,658   copying build/lib.linux-armv7l-3.9/msmtools/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools
2021-07-10T07:27:07,660   running install_egg_info
2021-07-10T07:27:07,683   running egg_info
2021-07-10T07:27:07,684   writing msmtools.egg-info/PKG-INFO
2021-07-10T07:27:07,686   writing dependency_links to msmtools.egg-info/dependency_links.txt
2021-07-10T07:27:07,689   writing requirements to msmtools.egg-info/requires.txt
2021-07-10T07:27:07,690   writing top-level names to msmtools.egg-info/top_level.txt
2021-07-10T07:27:07,724   reading manifest file 'msmtools.egg-info/SOURCES.txt'
2021-07-10T07:27:07,738   reading manifest template 'MANIFEST.in'
2021-07-10T07:27:07,819   warning: no files found matching 'tests/data/*' under directory 'msmtools'
2021-07-10T07:27:07,858   warning: no files found matching 'testfiles/' under directory 'msmtools'
2021-07-10T07:27:08,075   adding license file 'LICENSE.txt'
2021-07-10T07:27:08,088   writing manifest file 'msmtools.egg-info/SOURCES.txt'
2021-07-10T07:27:08,090   Copying msmtools.egg-info to build/bdist.linux-armv7l/wheel/msmtools-1.0.4-py3.9.egg-info
2021-07-10T07:27:08,109   running install_scripts
2021-07-10T07:27:08,157   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-10T07:27:08,163   creating build/bdist.linux-armv7l/wheel/msmtools-1.0.4.dist-info/WHEEL
2021-07-10T07:27:08,167   creating '/tmp/pip-wheel-c_4oswwo/msmtools-1.0.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T07:27:08,170   adding 'msmtools/__init__.py'
2021-07-10T07:27:08,172   adding 'msmtools/_version.py'
2021-07-10T07:27:08,175   adding 'msmtools/analysis/__init__.py'
2021-07-10T07:27:08,183   adding 'msmtools/analysis/api.py'
2021-07-10T07:27:08,186   adding 'msmtools/analysis/dense/__init__.py'
2021-07-10T07:27:08,188   adding 'msmtools/analysis/dense/assessment.py'
2021-07-10T07:27:08,190   adding 'msmtools/analysis/dense/assessment_test.py'
2021-07-10T07:27:08,192   adding 'msmtools/analysis/dense/birth_death_chain.py'
2021-07-10T07:27:08,194   adding 'msmtools/analysis/dense/committor.py'
2021-07-10T07:27:08,196   adding 'msmtools/analysis/dense/committor_test.py'
2021-07-10T07:27:08,199   adding 'msmtools/analysis/dense/correlations.py'
2021-07-10T07:27:08,201   adding 'msmtools/analysis/dense/correlations_test.py'
2021-07-10T07:27:08,203   adding 'msmtools/analysis/dense/decomposition.py'
2021-07-10T07:27:08,206   adding 'msmtools/analysis/dense/decomposition_test.py'
2021-07-10T07:27:08,208   adding 'msmtools/analysis/dense/expectations.py'
2021-07-10T07:27:08,210   adding 'msmtools/analysis/dense/expectations_test.py'
2021-07-10T07:27:08,212   adding 'msmtools/analysis/dense/fingerprints.py'
2021-07-10T07:27:08,214   adding 'msmtools/analysis/dense/fingerprints_test.py'
2021-07-10T07:27:08,216   adding 'msmtools/analysis/dense/hitting_probability.py'
2021-07-10T07:27:08,218   adding 'msmtools/analysis/dense/hitting_probability_test.py'
2021-07-10T07:27:08,220   adding 'msmtools/analysis/dense/mean_first_passage_time.py'
2021-07-10T07:27:08,221   adding 'msmtools/analysis/dense/mean_first_passage_time_test.py'
2021-07-10T07:27:08,225   adding 'msmtools/analysis/dense/pcca.py'
2021-07-10T07:27:08,227   adding 'msmtools/analysis/dense/pcca_test.py'
2021-07-10T07:27:08,229   adding 'msmtools/analysis/dense/sensitivity.py'
2021-07-10T07:27:08,231   adding 'msmtools/analysis/dense/sensitivity_test.py'
2021-07-10T07:27:08,233   adding 'msmtools/analysis/dense/stationary_vector.py'
2021-07-10T07:27:08,235   adding 'msmtools/analysis/dense/stationary_vector_test.py'
2021-07-10T07:27:08,237   adding 'msmtools/analysis/sparse/__init__.py'
2021-07-10T07:27:08,239   adding 'msmtools/analysis/sparse/assessment.py'
2021-07-10T07:27:08,241   adding 'msmtools/analysis/sparse/assessment_test.py'
2021-07-10T07:27:08,243   adding 'msmtools/analysis/sparse/birth_death_chain.py'
2021-07-10T07:27:08,245   adding 'msmtools/analysis/sparse/committor.py'
2021-07-10T07:27:08,247   adding 'msmtools/analysis/sparse/committor_test.py'
2021-07-10T07:27:08,250   adding 'msmtools/analysis/sparse/decomposition.py'
2021-07-10T07:27:08,252   adding 'msmtools/analysis/sparse/decomposition_test.py'
2021-07-10T07:27:08,254   adding 'msmtools/analysis/sparse/expectations.py'
2021-07-10T07:27:08,256   adding 'msmtools/analysis/sparse/expectations_test.py'
2021-07-10T07:27:08,258   adding 'msmtools/analysis/sparse/fingerprints.py'
2021-07-10T07:27:08,260   adding 'msmtools/analysis/sparse/fingerprints_test.py'
2021-07-10T07:27:08,262   adding 'msmtools/analysis/sparse/mean_first_passage_time.py'
2021-07-10T07:27:08,264   adding 'msmtools/analysis/sparse/mean_first_passage_time_test.py'
2021-07-10T07:27:08,266   adding 'msmtools/analysis/sparse/stationary_vector.py'
2021-07-10T07:27:08,267   adding 'msmtools/analysis/sparse/stationary_vector_test.py'
2021-07-10T07:27:08,270   adding 'msmtools/dtraj/__init__.py'
2021-07-10T07:27:08,272   adding 'msmtools/dtraj/api.py'
2021-07-10T07:27:08,275   adding 'msmtools/estimation/__init__.py'
2021-07-10T07:27:08,281   adding 'msmtools/estimation/api.py'
2021-07-10T07:27:08,283   adding 'msmtools/estimation/dense/__init__.py'
2021-07-10T07:27:08,285   adding 'msmtools/estimation/dense/bootstrapping.py'
2021-07-10T07:27:08,287   adding 'msmtools/estimation/dense/covariance.py'
2021-07-10T07:27:08,289   adding 'msmtools/estimation/dense/covariance_test.py'
2021-07-10T07:27:08,334   adding 'msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:27:08,337   adding 'msmtools/estimation/dense/sampler_nrev.py'
2021-07-10T07:27:08,481   adding 'msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:27:08,638   adding 'msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:27:08,646   adding 'msmtools/estimation/dense/tmatrix_sampler.py'
2021-07-10T07:27:08,648   adding 'msmtools/estimation/dense/tmatrix_sampler_test.py'
2021-07-10T07:27:08,650   adding 'msmtools/estimation/dense/transition_matrix.py'
2021-07-10T07:27:08,652   adding 'msmtools/estimation/sparse/__init__.py'
2021-07-10T07:27:08,654   adding 'msmtools/estimation/sparse/connectivity.py'
2021-07-10T07:27:08,656   adding 'msmtools/estimation/sparse/connectivity_test.py'
2021-07-10T07:27:08,658   adding 'msmtools/estimation/sparse/count_matrix.py'
2021-07-10T07:27:08,660   adding 'msmtools/estimation/sparse/count_matrix_test.py'
2021-07-10T07:27:08,663   adding 'msmtools/estimation/sparse/effective_counts.py'
2021-07-10T07:27:08,664   adding 'msmtools/estimation/sparse/likelihood.py'
2021-07-10T07:27:08,666   adding 'msmtools/estimation/sparse/likelihood_test.py'
2021-07-10T07:27:08,719   adding 'msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:27:08,779   adding 'msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:27:08,784   adding 'msmtools/estimation/sparse/prior.py'
2021-07-10T07:27:08,785   adding 'msmtools/estimation/sparse/prior_test.py'
2021-07-10T07:27:08,787   adding 'msmtools/estimation/sparse/transition_matrix.py'
2021-07-10T07:27:08,788   adding 'msmtools/estimation/sparse/transition_matrix_test.py'
2021-07-10T07:27:08,790   adding 'msmtools/flux/__init__.py'
2021-07-10T07:27:08,793   adding 'msmtools/flux/api.py'
2021-07-10T07:27:08,796   adding 'msmtools/flux/reactive_flux.py'
2021-07-10T07:27:08,798   adding 'msmtools/flux/reactive_flux_test.py'
2021-07-10T07:27:08,800   adding 'msmtools/flux/dense/__init__.py'
2021-07-10T07:27:08,802   adding 'msmtools/flux/dense/tpt.py'
2021-07-10T07:27:08,804   adding 'msmtools/flux/dense/tpt_test.py'
2021-07-10T07:27:08,806   adding 'msmtools/flux/sparse/__init__.py'
2021-07-10T07:27:08,809   adding 'msmtools/flux/sparse/pathways.py'
2021-07-10T07:27:08,811   adding 'msmtools/flux/sparse/tpt.py'
2021-07-10T07:27:08,813   adding 'msmtools/flux/sparse/tpt_test.py'
2021-07-10T07:27:08,815   adding 'msmtools/generation/__init__.py'
2021-07-10T07:27:08,817   adding 'msmtools/generation/api.py'
2021-07-10T07:27:08,819   adding 'msmtools/util/__init__.py'
2021-07-10T07:27:08,821   adding 'msmtools/util/annotators.py'
2021-07-10T07:27:08,823   adding 'msmtools/util/exceptions.py'
2021-07-10T07:27:08,824   adding 'msmtools/util/numeric.py'
2021-07-10T07:27:08,827   adding 'msmtools/util/statistics.py'
2021-07-10T07:27:08,829   adding 'msmtools/util/types.py'
2021-07-10T07:27:08,831   adding 'msmtools/util/matrix/__init__.py'
2021-07-10T07:27:08,833   adding 'msmtools/util/matrix/matrix.py'
2021-07-10T07:27:08,836   adding 'msmtools/util/matrix/matrix_test.py'
2021-07-10T07:27:08,839   adding 'msmtools-1.0.4.dist-info/LICENSE.txt'
2021-07-10T07:27:08,840   adding 'msmtools-1.0.4.dist-info/METADATA'
2021-07-10T07:27:08,841   adding 'msmtools-1.0.4.dist-info/WHEEL'
2021-07-10T07:27:08,842   adding 'msmtools-1.0.4.dist-info/pbr.json'
2021-07-10T07:27:08,844   adding 'msmtools-1.0.4.dist-info/top_level.txt'
2021-07-10T07:27:08,846   adding 'msmtools-1.0.4.dist-info/RECORD'
2021-07-10T07:27:08,865   removing build/bdist.linux-armv7l/wheel
2021-07-10T07:27:09,058   Building wheel for msmtools (setup.py): finished with status 'done'
2021-07-10T07:27:09,074   Created wheel for msmtools: filename=msmtools-1.0.4-cp39-cp39-linux_armv7l.whl size=1077891 sha256=3442dc36bcd1a31e63aefb0925df88a77031c80a5f57db983e506b7573a29d0b
2021-07-10T07:27:09,074   Stored in directory: /tmp/pip-ephem-wheel-cache-n0n4uwvx/wheels/07/01/2c/be13f453be6688687ed7d58031e5f90f600e26afc609ca2181
2021-07-10T07:27:09,087 Successfully built msmtools
2021-07-10T07:27:09,126 Removed build tracker: '/tmp/pip-req-tracker-9pwgk7lb'