2021-07-10T07:36:46,975 Created temporary directory: /tmp/pip-ephem-wheel-cache-sij_uih1
2021-07-10T07:36:46,978 Created temporary directory: /tmp/pip-req-tracker-ed98ignp
2021-07-10T07:36:46,978 Initialized build tracking at /tmp/pip-req-tracker-ed98ignp
2021-07-10T07:36:46,979 Created build tracker: /tmp/pip-req-tracker-ed98ignp
2021-07-10T07:36:46,979 Entered build tracker: /tmp/pip-req-tracker-ed98ignp
2021-07-10T07:36:46,979 Created temporary directory: /tmp/pip-wheel-bn7txhze
2021-07-10T07:36:47,012 1 location(s) to search for versions of msmtools:
2021-07-10T07:36:47,012 * https://pypi.org/simple/msmtools/
2021-07-10T07:36:47,013 Fetching project page and analyzing links: https://pypi.org/simple/msmtools/
2021-07-10T07:36:47,013 Getting page https://pypi.org/simple/msmtools/
2021-07-10T07:36:47,015 Found index url https://pypi.org/simple
2021-07-10T07:36:47,110   Found link https://files.pythonhosted.org/packages/06/eb/7ea49c965c6d6cc5d49cf7619eb365b9f80f92d449fa2d83286d57c23b09/msmtools-1.0.tar.gz#sha256=cd2cfbb47327eb24d4855b7585868fbbc3be14c824a2eaa3fa0c2a7e76310595 (from https://pypi.org/simple/msmtools/), version: 1.0
2021-07-10T07:36:47,111   Found link https://files.pythonhosted.org/packages/c4/ca/50da8c42c7aad77f9d8f5c5cf1aa0f8812c01b78ea07c4719daca73a90fb/msmtools-1.0.1.tar.gz#sha256=b6704dea0bb816e3aca0be871f15199a18964a799854a000135ffe95a13ea0d6 (from https://pypi.org/simple/msmtools/), version: 1.0.1
2021-07-10T07:36:47,111   Found link https://files.pythonhosted.org/packages/f7/e7/8fad6dccdaf5c35379a3d670c5b17546fcf5e9b2c7feec293dec0e9fc935/msmtools-1.0.2.tar.gz#sha256=f5f9cb4a2b10f7d7f2d5b7cf520703011e6d6f7961a858c5a88b82f0ad2c494a (from https://pypi.org/simple/msmtools/), version: 1.0.2
2021-07-10T07:36:47,112   Found link https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 (from https://pypi.org/simple/msmtools/), version: 1.0.3
2021-07-10T07:36:47,112   Found link https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 (from https://pypi.org/simple/msmtools/), version: 1.0.4
2021-07-10T07:36:47,112   Found link https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 (from https://pypi.org/simple/msmtools/), version: 1.1
2021-07-10T07:36:47,113   Found link https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b (from https://pypi.org/simple/msmtools/), version: 1.1.1
2021-07-10T07:36:47,113   Found link https://files.pythonhosted.org/packages/d8/83/2de718bea8c6ffd64287549e1f443695c9c7eae576e4ec8b695748735bcc/msmtools-1.1.2.tar.gz#sha256=1ae40e839dff551575e38bb8c061073a2f1e69279e53ed62f66c88006a1f0a4f (from https://pypi.org/simple/msmtools/), version: 1.1.2
2021-07-10T07:36:47,113   Found link https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b (from https://pypi.org/simple/msmtools/), version: 1.1.3
2021-07-10T07:36:47,113   Found link https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 (from https://pypi.org/simple/msmtools/), version: 1.1.4
2021-07-10T07:36:47,114   Found link https://files.pythonhosted.org/packages/5e/a2/42d30177e9f8b9071a5cf17c6cd0a75b9b245d708fc626b015599308a898/msmtools-1.2.tar.gz#sha256=eb509f9b2bebd5a07896ec563b14df3ebee2b9871730f5ac87e1ab3179c8c6c4 (from https://pypi.org/simple/msmtools/), version: 1.2
2021-07-10T07:36:47,114   Found link https://files.pythonhosted.org/packages/c5/bb/79aa3617eed8eaea3c2639d172929079b680e1904d4e19b50d35612c5db3/msmtools-1.2.1.tar.gz#sha256=7282cec96360372e8440146dfe27848273bc3d83d18806ea56e3986a14d5bdec (from https://pypi.org/simple/msmtools/), version: 1.2.1
2021-07-10T07:36:47,114   Found link https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 (from https://pypi.org/simple/msmtools/), version: 1.2.2
2021-07-10T07:36:47,115   Found link https://files.pythonhosted.org/packages/53/84/416bd9c21c408ef59953804c1b4ec805950adfd89102c43c54685b6f3cdf/msmtools-1.2.3.tar.gz#sha256=3f3c39a4558887575dd2bfdb0711b6d073446cb0b8767eafda16bfe0b92409c9 (from https://pypi.org/simple/msmtools/), version: 1.2.3
2021-07-10T07:36:47,115   Found link https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b (from https://pypi.org/simple/msmtools/), version: 1.2.4
2021-07-10T07:36:47,115   Found link https://files.pythonhosted.org/packages/9e/95/ac5dfa19f13379490dbef764a994c6d564b32de2d68e712042af8ff84d2a/msmtools-1.2.5.tar.gz#sha256=e07b73ad9e4e8ef8aca82e6b5bb55f57f8400a65fb2fd656b521f72237a7310a (from https://pypi.org/simple/msmtools/), version: 1.2.5
2021-07-10T07:36:47,115   Found link https://files.pythonhosted.org/packages/e4/1f/366f5c37c1231f87b6789f904e4e68ae47b4b910119da9ec5905e9fa1387/msmtools-1.2.6.tar.gz#sha256=2bfa6c02fff9ed9433c90d7ddc7860a8e2cf881fc67ec1ea5ef93f34a7e03541 (from https://pypi.org/simple/msmtools/), version: 1.2.6
2021-07-10T07:36:47,116 Skipping link: not a file: https://pypi.org/simple/msmtools/
2021-07-10T07:36:47,135 Given no hashes to check 1 links for project 'msmtools': discarding no candidates
2021-07-10T07:36:47,154 Collecting msmtools==1.1
2021-07-10T07:36:47,156   Created temporary directory: /tmp/pip-unpack-jrzkdcdf
2021-07-10T07:36:47,369   Downloading msmtools-1.1.tar.gz (612 kB)
2021-07-10T07:36:48,037   Added msmtools==1.1 from https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 to build tracker '/tmp/pip-req-tracker-ed98ignp'
2021-07-10T07:36:48,038     Running setup.py (path:/tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/setup.py) egg_info for package msmtools
2021-07-10T07:36:48,039     Created temporary directory: /tmp/pip-pip-egg-info-sai1hz9q
2021-07-10T07:36:48,039     Running command python setup.py egg_info
2021-07-10T07:36:48,917     running egg_info
2021-07-10T07:36:48,919     creating /tmp/pip-pip-egg-info-sai1hz9q/msmtools.egg-info
2021-07-10T07:36:48,920     writing /tmp/pip-pip-egg-info-sai1hz9q/msmtools.egg-info/PKG-INFO
2021-07-10T07:36:48,923     writing dependency_links to /tmp/pip-pip-egg-info-sai1hz9q/msmtools.egg-info/dependency_links.txt
2021-07-10T07:36:48,925     writing requirements to /tmp/pip-pip-egg-info-sai1hz9q/msmtools.egg-info/requires.txt
2021-07-10T07:36:49,129     creating /tmp/hasfunction-s580byfx/tmp
2021-07-10T07:36:49,130     creating /tmp/hasfunction-s580byfx/tmp/hasfunction-s580byfx
2021-07-10T07:36:49,130     cc -c /tmp/hasfunction-s580byfx/funcname.c -o /tmp/hasfunction-s580byfx/tmp/hasfunction-s580byfx/funcname.o
2021-07-10T07:36:49,215     cc /tmp/hasfunction-s580byfx/tmp/hasfunction-s580byfx/funcname.o -o /tmp/hasfunction-s580byfx/a.out
2021-07-10T07:36:49,334     creating /tmp/hasfunction-i780pylf/tmp
2021-07-10T07:36:49,335     creating /tmp/hasfunction-i780pylf/tmp/hasfunction-i780pylf
2021-07-10T07:36:49,335     cc -c /tmp/hasfunction-i780pylf/funcname.c -o /tmp/hasfunction-i780pylf/tmp/hasfunction-i780pylf/funcname.o
2021-07-10T07:36:49,418     cc /tmp/hasfunction-i780pylf/tmp/hasfunction-i780pylf/funcname.o -lgomp -o /tmp/hasfunction-i780pylf/a.out
2021-07-10T07:36:50,235     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/msmtools/estimation/dense/mle_trev_given_pi.pyx
2021-07-10T07:36:50,236       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:36:51,619     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/msmtools/estimation/dense/sampler_rev.pyx
2021-07-10T07:36:51,619       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:36:53,301     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/msmtools/estimation/dense/sampler_revpi.pyx
2021-07-10T07:36:53,301       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:36:55,005     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/msmtools/estimation/sparse/mle_trev.pyx
2021-07-10T07:36:55,005       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:36:56,456     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/msmtools/estimation/sparse/mle_trev_given_pi.pyx
2021-07-10T07:36:56,456       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T07:36:57,833     Compiling msmtools/estimation/dense/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:36:57,833     Compiling msmtools/estimation/sparse/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:36:57,834     Compiling msmtools/estimation/sparse/mle_trev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:36:57,834     Compiling msmtools/estimation/dense/sampler_rev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:36:57,834     Compiling msmtools/estimation/dense/sampler_revpi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T07:36:57,834     [1/5] Cythonizing msmtools/estimation/dense/mle_trev_given_pi.pyx
2021-07-10T07:36:57,834     [2/5] Cythonizing msmtools/estimation/dense/sampler_rev.pyx
2021-07-10T07:36:57,834     [3/5] Cythonizing msmtools/estimation/dense/sampler_revpi.pyx
2021-07-10T07:36:57,834     [4/5] Cythonizing msmtools/estimation/sparse/mle_trev.pyx
2021-07-10T07:36:57,835     [5/5] Cythonizing msmtools/estimation/sparse/mle_trev_given_pi.pyx
2021-07-10T07:36:57,835     /tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/setup.py:152: UserWarning: enabled openmp
2021-07-10T07:36:57,835       warnings.warn('enabled openmp')
2021-07-10T07:36:57,835     writing top-level names to /tmp/pip-pip-egg-info-sai1hz9q/msmtools.egg-info/top_level.txt
2021-07-10T07:36:57,836     writing manifest file '/tmp/pip-pip-egg-info-sai1hz9q/msmtools.egg-info/SOURCES.txt'
2021-07-10T07:36:58,120     reading manifest file '/tmp/pip-pip-egg-info-sai1hz9q/msmtools.egg-info/SOURCES.txt'
2021-07-10T07:36:58,121     reading manifest template 'MANIFEST.in'
2021-07-10T07:36:58,220     warning: no files found matching 'tests/data/*' under directory 'msmtools'
2021-07-10T07:36:58,272     warning: no files found matching 'testfiles/' under directory 'msmtools'
2021-07-10T07:36:58,510     adding license file 'LICENSE.txt'
2021-07-10T07:36:58,519     writing manifest file '/tmp/pip-pip-egg-info-sai1hz9q/msmtools.egg-info/SOURCES.txt'
2021-07-10T07:36:58,752   Source in /tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb has version 1.1, which satisfies requirement msmtools==1.1 from https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5
2021-07-10T07:36:58,753   Removed msmtools==1.1 from https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 from build tracker '/tmp/pip-req-tracker-ed98ignp'
2021-07-10T07:36:58,757 Created temporary directory: /tmp/pip-unpack-jlruq0al
2021-07-10T07:36:58,758 Building wheels for collected packages: msmtools
2021-07-10T07:36:58,761   Created temporary directory: /tmp/pip-wheel-whf63dl0
2021-07-10T07:36:58,762   Building wheel for msmtools (setup.py): started
2021-07-10T07:36:58,762   Destination directory: /tmp/pip-wheel-whf63dl0
2021-07-10T07:36:58,762   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-whf63dl0
2021-07-10T07:36:59,636   running bdist_wheel
2021-07-10T07:36:59,822   creating /tmp/hasfunction-38t79c0d/tmp
2021-07-10T07:36:59,822   creating /tmp/hasfunction-38t79c0d/tmp/hasfunction-38t79c0d
2021-07-10T07:36:59,823   cc -c /tmp/hasfunction-38t79c0d/funcname.c -o /tmp/hasfunction-38t79c0d/tmp/hasfunction-38t79c0d/funcname.o
2021-07-10T07:36:59,908   cc /tmp/hasfunction-38t79c0d/tmp/hasfunction-38t79c0d/funcname.o -o /tmp/hasfunction-38t79c0d/a.out
2021-07-10T07:37:00,024   creating /tmp/hasfunction-41xte40v/tmp
2021-07-10T07:37:00,024   creating /tmp/hasfunction-41xte40v/tmp/hasfunction-41xte40v
2021-07-10T07:37:00,025   cc -c /tmp/hasfunction-41xte40v/funcname.c -o /tmp/hasfunction-41xte40v/tmp/hasfunction-41xte40v/funcname.o
2021-07-10T07:37:00,113   cc /tmp/hasfunction-41xte40v/tmp/hasfunction-41xte40v/funcname.o -lgomp -o /tmp/hasfunction-41xte40v/a.out
2021-07-10T07:37:00,770   /tmp/pip-wheel-bn7txhze/msmtools_4d9fab193348476c95050aff1331ddfb/setup.py:152: UserWarning: enabled openmp
2021-07-10T07:37:00,770     warnings.warn('enabled openmp')
2021-07-10T07:37:01,052   running build
2021-07-10T07:37:01,052   running build_py
2021-07-10T07:37:01,057   creating build
2021-07-10T07:37:01,058   creating build/lib.linux-armv7l-3.9
2021-07-10T07:37:01,058   creating build/lib.linux-armv7l-3.9/msmtools
2021-07-10T07:37:01,059   copying msmtools/__init__.py -> build/lib.linux-armv7l-3.9/msmtools
2021-07-10T07:37:01,061   copying msmtools/_version.py -> build/lib.linux-armv7l-3.9/msmtools
2021-07-10T07:37:01,063   creating build/lib.linux-armv7l-3.9/msmtools/dtraj
2021-07-10T07:37:01,064   copying msmtools/dtraj/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj
2021-07-10T07:37:01,066   copying msmtools/dtraj/api.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj
2021-07-10T07:37:01,069   creating build/lib.linux-armv7l-3.9/msmtools/estimation
2021-07-10T07:37:01,070   copying msmtools/estimation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation
2021-07-10T07:37:01,072   copying msmtools/estimation/api.py -> build/lib.linux-armv7l-3.9/msmtools/estimation
2021-07-10T07:37:01,076   creating build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:37:01,077   copying msmtools/flux/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:37:01,079   copying msmtools/flux/reactive_flux_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:37:01,081   copying msmtools/flux/reactive_flux.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:37:01,083   copying msmtools/flux/api.py -> build/lib.linux-armv7l-3.9/msmtools/flux
2021-07-10T07:37:01,087   creating build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:37:01,087   copying msmtools/util/numeric.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:37:01,089   copying msmtools/util/annotators.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:37:01,092   copying msmtools/util/types.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:37:01,094   copying msmtools/util/statistics.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:37:01,096   copying msmtools/util/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:37:01,098   copying msmtools/util/exceptions.py -> build/lib.linux-armv7l-3.9/msmtools/util
2021-07-10T07:37:01,101   creating build/lib.linux-armv7l-3.9/msmtools/analysis
2021-07-10T07:37:01,101   copying msmtools/analysis/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis
2021-07-10T07:37:01,103   copying msmtools/analysis/api.py -> build/lib.linux-armv7l-3.9/msmtools/analysis
2021-07-10T07:37:01,108   creating build/lib.linux-armv7l-3.9/msmtools/generation
2021-07-10T07:37:01,109   copying msmtools/generation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation
2021-07-10T07:37:01,111   copying msmtools/generation/api.py -> build/lib.linux-armv7l-3.9/msmtools/generation
2021-07-10T07:37:01,115   creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,115   copying msmtools/estimation/sparse/connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,118   copying msmtools/estimation/sparse/prior_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,120   copying msmtools/estimation/sparse/count_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,122   copying msmtools/estimation/sparse/effective_counts.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,125   copying msmtools/estimation/sparse/count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,127   copying msmtools/estimation/sparse/transition_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,129   copying msmtools/estimation/sparse/connectivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,131   copying msmtools/estimation/sparse/likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,133   copying msmtools/estimation/sparse/likelihood_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,135   copying msmtools/estimation/sparse/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,137   copying msmtools/estimation/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,138   copying msmtools/estimation/sparse/prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:01,141   creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,142   copying msmtools/estimation/dense/sampler_nrev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,144   copying msmtools/estimation/dense/tmatrix_sampler_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,146   copying msmtools/estimation/dense/tmatrix_sampler.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,148   copying msmtools/estimation/dense/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,150   copying msmtools/estimation/dense/bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,153   copying msmtools/estimation/dense/covariance_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,155   copying msmtools/estimation/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,157   copying msmtools/estimation/dense/covariance.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,160   creating build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:37:01,160   copying msmtools/flux/sparse/pathways_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:37:01,163   copying msmtools/flux/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:37:01,165   copying msmtools/flux/sparse/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:37:01,167   copying msmtools/flux/sparse/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:37:01,169   copying msmtools/flux/sparse/pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse
2021-07-10T07:37:01,172   creating build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T07:37:01,173   copying msmtools/flux/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T07:37:01,175   copying msmtools/flux/dense/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T07:37:01,177   copying msmtools/flux/dense/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense
2021-07-10T07:37:01,180   creating build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T07:37:01,181   copying msmtools/util/matrix/matrix.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T07:37:01,184   copying msmtools/util/matrix/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T07:37:01,185   copying msmtools/util/matrix/matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix
2021-07-10T07:37:01,189   creating build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,190   copying msmtools/analysis/sparse/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,193   copying msmtools/analysis/sparse/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,195   copying msmtools/analysis/sparse/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,197   copying msmtools/analysis/sparse/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,200   copying msmtools/analysis/sparse/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,202   copying msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,203   copying msmtools/analysis/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,205   copying msmtools/analysis/sparse/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,207   copying msmtools/analysis/sparse/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,209   copying msmtools/analysis/sparse/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,212   copying msmtools/analysis/sparse/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,214   copying msmtools/analysis/sparse/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,217   copying msmtools/analysis/sparse/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,219   copying msmtools/analysis/sparse/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,221   copying msmtools/analysis/sparse/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,223   copying msmtools/analysis/sparse/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse
2021-07-10T07:37:01,227   creating build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,228   copying msmtools/analysis/dense/sensitivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,230   copying msmtools/analysis/dense/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,233   copying msmtools/analysis/dense/correlations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,235   copying msmtools/analysis/dense/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,237   copying msmtools/analysis/dense/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,239   copying msmtools/analysis/dense/hitting_probability.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,240   copying msmtools/analysis/dense/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,243   copying msmtools/analysis/dense/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,245   copying msmtools/analysis/dense/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,247   copying msmtools/analysis/dense/sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,250   copying msmtools/analysis/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,251   copying msmtools/analysis/dense/hitting_probability_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,253   copying msmtools/analysis/dense/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,255   copying msmtools/analysis/dense/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,257   copying msmtools/analysis/dense/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,259   copying msmtools/analysis/dense/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,262   copying msmtools/analysis/dense/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,264   copying msmtools/analysis/dense/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,266   copying msmtools/analysis/dense/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,268   copying msmtools/analysis/dense/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,270   copying msmtools/analysis/dense/pcca.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,273   copying msmtools/analysis/dense/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,275   copying msmtools/analysis/dense/correlations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,277   copying msmtools/analysis/dense/pcca_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense
2021-07-10T07:37:01,292   running build_ext
2021-07-10T07:37:01,296   building 'msmtools.estimation.dense.mle_trev_given_pi' extension
2021-07-10T07:37:01,296   creating build/temp.linux-armv7l-3.9
2021-07-10T07:37:01,297   creating build/temp.linux-armv7l-3.9/msmtools
2021-07-10T07:37:01,297   creating build/temp.linux-armv7l-3.9/msmtools/estimation
2021-07-10T07:37:01,298   creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense
2021-07-10T07:37:01,299   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o -fopenmp
2021-07-10T07:37:01,711   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -fopenmp
2021-07-10T07:37:02,109   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:37:02,110                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:37:02,110                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:37:02,110                    from msmtools/estimation/dense/mle_trev_given_pi.c:632:
2021-07-10T07:37:02,110   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:37:02,110      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:37:02,111         |  ^~~~~~~
2021-07-10T07:37:05,082   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:37:05,218   building 'msmtools.estimation.sparse.mle_trev_given_pi' extension
2021-07-10T07:37:05,219   creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse
2021-07-10T07:37:05,219   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o -fopenmp
2021-07-10T07:37:05,581   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -fopenmp
2021-07-10T07:37:05,974   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:37:05,975                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:37:05,975                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:37:05,975                    from msmtools/estimation/sparse/mle_trev_given_pi.c:633:
2021-07-10T07:37:05,975   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:37:05,975      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:37:05,975         |  ^~~~~~~
2021-07-10T07:37:10,248   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:37:10,392   building 'msmtools.estimation.sparse.mle_trev' extension
2021-07-10T07:37:10,393   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o -fopenmp
2021-07-10T07:37:10,730   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -fopenmp
2021-07-10T07:37:11,128   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:37:11,129                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:37:11,129                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:37:11,129                    from msmtools/estimation/sparse/mle_trev.c:632:
2021-07-10T07:37:11,129   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:37:11,130      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:37:11,130         |  ^~~~~~~
2021-07-10T07:37:14,788   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:37:14,918   building 'msmtools.estimation.dense.sampler_rev' extension
2021-07-10T07:37:14,919   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp
2021-07-10T07:37:15,078   msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’:
2021-07-10T07:37:15,078   msmtools/estimation/dense/_ranlib.c:1567:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
2021-07-10T07:37:15,078    1567 |   int m;
2021-07-10T07:37:15,079         |       ^
2021-07-10T07:37:16,536   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp
2021-07-10T07:37:16,650   msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’:
2021-07-10T07:37:16,650   msmtools/estimation/dense/_rnglib.c:467:7: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T07:37:16,650     467 |   int j;
2021-07-10T07:37:16,651         |       ^
2021-07-10T07:37:16,657   msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’:
2021-07-10T07:37:16,657   msmtools/estimation/dense/_rnglib.c:1628:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T07:37:16,658    1628 |   int i;
2021-07-10T07:37:16,658         |       ^
2021-07-10T07:37:16,658   msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’:
2021-07-10T07:37:16,659   msmtools/estimation/dense/_rnglib.c:1727:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T07:37:16,659    1727 |   int i;
2021-07-10T07:37:16,659         |       ^
2021-07-10T07:37:17,174   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o -fopenmp
2021-07-10T07:37:17,773   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -fopenmp
2021-07-10T07:37:18,158   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:37:18,158                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:37:18,159                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:37:18,159                    from msmtools/estimation/dense/sampler_rev.c:634:
2021-07-10T07:37:18,159   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:37:18,159      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:37:18,159         |  ^~~~~~~
2021-07-10T07:37:26,264   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:37:26,425   building 'msmtools.estimation.dense.sampler_revpi' extension
2021-07-10T07:37:26,426   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp
2021-07-10T07:37:26,580   msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’:
2021-07-10T07:37:26,581   msmtools/estimation/dense/_ranlib.c:1567:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
2021-07-10T07:37:26,581    1567 |   int m;
2021-07-10T07:37:26,581         |       ^
2021-07-10T07:37:28,044   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp
2021-07-10T07:37:28,155   msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’:
2021-07-10T07:37:28,156   msmtools/estimation/dense/_rnglib.c:467:7: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T07:37:28,156     467 |   int j;
2021-07-10T07:37:28,156         |       ^
2021-07-10T07:37:28,162   msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’:
2021-07-10T07:37:28,163   msmtools/estimation/dense/_rnglib.c:1628:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T07:37:28,163    1628 |   int i;
2021-07-10T07:37:28,163         |       ^
2021-07-10T07:37:28,163   msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’:
2021-07-10T07:37:28,164   msmtools/estimation/dense/_rnglib.c:1727:7: warning: unused variable ‘i’ [-Wunused-variable]
2021-07-10T07:37:28,164    1727 |   int i;
2021-07-10T07:37:28,164         |       ^
2021-07-10T07:37:28,682   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o -fopenmp
2021-07-10T07:37:29,125   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -fopenmp
2021-07-10T07:37:29,503   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T07:37:29,504                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T07:37:29,504                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T07:37:29,504                    from msmtools/estimation/dense/sampler_revpi.c:634:
2021-07-10T07:37:29,504   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T07:37:29,504      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T07:37:29,504         |  ^~~~~~~
2021-07-10T07:37:38,883   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -lgomp
2021-07-10T07:37:39,059   installing to build/bdist.linux-armv7l/wheel
2021-07-10T07:37:39,060   running install
2021-07-10T07:37:39,062   running install_lib
2021-07-10T07:37:39,067   creating build/bdist.linux-armv7l
2021-07-10T07:37:39,068   creating build/bdist.linux-armv7l/wheel
2021-07-10T07:37:39,070   creating build/bdist.linux-armv7l/wheel/msmtools
2021-07-10T07:37:39,072   creating build/bdist.linux-armv7l/wheel/msmtools/dtraj
2021-07-10T07:37:39,073   copying build/lib.linux-armv7l-3.9/msmtools/dtraj/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj
2021-07-10T07:37:39,075   copying build/lib.linux-armv7l-3.9/msmtools/dtraj/api.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj
2021-07-10T07:37:39,079   creating build/bdist.linux-armv7l/wheel/msmtools/estimation
2021-07-10T07:37:39,081   creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,082   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,085   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,087   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,090   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/effective_counts.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,093   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,095   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,098   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,100   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,108   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,111   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,113   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,116   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,124   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,127   copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse
2021-07-10T07:37:39,130   creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,131   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_nrev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,134   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,136   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,139   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,142   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,145   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,165   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,175   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,177   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,178   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,196   copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense
2021-07-10T07:37:39,199   copying build/lib.linux-armv7l-3.9/msmtools/estimation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation
2021-07-10T07:37:39,201   copying build/lib.linux-armv7l-3.9/msmtools/estimation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation
2021-07-10T07:37:39,205   creating build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:37:39,206   creating build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:37:39,207   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:37:39,209   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:37:39,211   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:37:39,214   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:37:39,216   copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse
2021-07-10T07:37:39,220   creating build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T07:37:39,221   copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T07:37:39,223   copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T07:37:39,226   copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense
2021-07-10T07:37:39,229   copying build/lib.linux-armv7l-3.9/msmtools/flux/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:37:39,231   copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:37:39,234   copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:37:39,236   copying build/lib.linux-armv7l-3.9/msmtools/flux/api.py -> build/bdist.linux-armv7l/wheel/msmtools/flux
2021-07-10T07:37:39,240   creating build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:37:39,241   creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T07:37:39,242   copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T07:37:39,244   copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T07:37:39,246   copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix
2021-07-10T07:37:39,249   copying build/lib.linux-armv7l-3.9/msmtools/util/numeric.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:37:39,251   copying build/lib.linux-armv7l-3.9/msmtools/util/annotators.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:37:39,253   copying build/lib.linux-armv7l-3.9/msmtools/util/types.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:37:39,256   copying build/lib.linux-armv7l-3.9/msmtools/util/statistics.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:37:39,258   copying build/lib.linux-armv7l-3.9/msmtools/util/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:37:39,260   copying build/lib.linux-armv7l-3.9/msmtools/util/exceptions.py -> build/bdist.linux-armv7l/wheel/msmtools/util
2021-07-10T07:37:39,262   copying build/lib.linux-armv7l-3.9/msmtools/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools
2021-07-10T07:37:39,265   creating build/bdist.linux-armv7l/wheel/msmtools/analysis
2021-07-10T07:37:39,266   creating build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,267   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,270   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,272   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,275   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,277   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,279   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,281   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,283   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,285   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,288   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,290   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,293   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,296   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,298   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,300   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,303   copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse
2021-07-10T07:37:39,306   creating build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,307   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,310   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,313   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,315   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,317   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,319   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,322   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,325   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,327   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,329   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,332   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,334   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,335   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,337   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,340   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,343   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,345   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,347   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,350   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,352   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,355   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,358   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,360   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,363   copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense
2021-07-10T07:37:39,366   copying build/lib.linux-armv7l-3.9/msmtools/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis
2021-07-10T07:37:39,368   copying build/lib.linux-armv7l-3.9/msmtools/analysis/api.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis
2021-07-10T07:37:39,373   creating build/bdist.linux-armv7l/wheel/msmtools/generation
2021-07-10T07:37:39,374   copying build/lib.linux-armv7l-3.9/msmtools/generation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation
2021-07-10T07:37:39,377   copying build/lib.linux-armv7l-3.9/msmtools/generation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/generation
2021-07-10T07:37:39,379   copying build/lib.linux-armv7l-3.9/msmtools/_version.py -> build/bdist.linux-armv7l/wheel/msmtools
2021-07-10T07:37:39,381   running install_egg_info
2021-07-10T07:37:39,404   running egg_info
2021-07-10T07:37:39,405   writing msmtools.egg-info/PKG-INFO
2021-07-10T07:37:39,407   writing dependency_links to msmtools.egg-info/dependency_links.txt
2021-07-10T07:37:39,409   writing requirements to msmtools.egg-info/requires.txt
2021-07-10T07:37:39,410   writing top-level names to msmtools.egg-info/top_level.txt
2021-07-10T07:37:39,443   reading manifest file 'msmtools.egg-info/SOURCES.txt'
2021-07-10T07:37:39,460   reading manifest template 'MANIFEST.in'
2021-07-10T07:37:39,549   warning: no files found matching 'tests/data/*' under directory 'msmtools'
2021-07-10T07:37:39,593   warning: no files found matching 'testfiles/' under directory 'msmtools'
2021-07-10T07:37:39,832   adding license file 'LICENSE.txt'
2021-07-10T07:37:39,845   writing manifest file 'msmtools.egg-info/SOURCES.txt'
2021-07-10T07:37:39,847   Copying msmtools.egg-info to build/bdist.linux-armv7l/wheel/msmtools-1.1-py3.9.egg-info
2021-07-10T07:37:39,860   running install_scripts
2021-07-10T07:37:39,903   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-10T07:37:39,908   creating build/bdist.linux-armv7l/wheel/msmtools-1.1.dist-info/WHEEL
2021-07-10T07:37:39,910   creating '/tmp/pip-wheel-whf63dl0/msmtools-1.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T07:37:39,913   adding 'msmtools/__init__.py'
2021-07-10T07:37:39,915   adding 'msmtools/_version.py'
2021-07-10T07:37:39,917   adding 'msmtools/analysis/__init__.py'
2021-07-10T07:37:39,924   adding 'msmtools/analysis/api.py'
2021-07-10T07:37:39,927   adding 'msmtools/analysis/dense/__init__.py'
2021-07-10T07:37:39,928   adding 'msmtools/analysis/dense/assessment.py'
2021-07-10T07:37:39,930   adding 'msmtools/analysis/dense/assessment_test.py'
2021-07-10T07:37:39,932   adding 'msmtools/analysis/dense/birth_death_chain.py'
2021-07-10T07:37:39,933   adding 'msmtools/analysis/dense/committor.py'
2021-07-10T07:37:39,935   adding 'msmtools/analysis/dense/committor_test.py'
2021-07-10T07:37:39,937   adding 'msmtools/analysis/dense/correlations.py'
2021-07-10T07:37:39,938   adding 'msmtools/analysis/dense/correlations_test.py'
2021-07-10T07:37:39,940   adding 'msmtools/analysis/dense/decomposition.py'
2021-07-10T07:37:39,942   adding 'msmtools/analysis/dense/decomposition_test.py'
2021-07-10T07:37:39,944   adding 'msmtools/analysis/dense/expectations.py'
2021-07-10T07:37:39,945   adding 'msmtools/analysis/dense/expectations_test.py'
2021-07-10T07:37:39,947   adding 'msmtools/analysis/dense/fingerprints.py'
2021-07-10T07:37:39,949   adding 'msmtools/analysis/dense/fingerprints_test.py'
2021-07-10T07:37:39,950   adding 'msmtools/analysis/dense/hitting_probability.py'
2021-07-10T07:37:39,952   adding 'msmtools/analysis/dense/hitting_probability_test.py'
2021-07-10T07:37:39,953   adding 'msmtools/analysis/dense/mean_first_passage_time.py'
2021-07-10T07:37:39,954   adding 'msmtools/analysis/dense/mean_first_passage_time_test.py'
2021-07-10T07:37:39,957   adding 'msmtools/analysis/dense/pcca.py'
2021-07-10T07:37:39,959   adding 'msmtools/analysis/dense/pcca_test.py'
2021-07-10T07:37:39,961   adding 'msmtools/analysis/dense/sensitivity.py'
2021-07-10T07:37:39,963   adding 'msmtools/analysis/dense/sensitivity_test.py'
2021-07-10T07:37:39,964   adding 'msmtools/analysis/dense/stationary_vector.py'
2021-07-10T07:37:39,965   adding 'msmtools/analysis/dense/stationary_vector_test.py'
2021-07-10T07:37:39,967   adding 'msmtools/analysis/sparse/__init__.py'
2021-07-10T07:37:39,969   adding 'msmtools/analysis/sparse/assessment.py'
2021-07-10T07:37:39,970   adding 'msmtools/analysis/sparse/assessment_test.py'
2021-07-10T07:37:39,972   adding 'msmtools/analysis/sparse/birth_death_chain.py'
2021-07-10T07:37:39,974   adding 'msmtools/analysis/sparse/committor.py'
2021-07-10T07:37:39,975   adding 'msmtools/analysis/sparse/committor_test.py'
2021-07-10T07:37:39,978   adding 'msmtools/analysis/sparse/decomposition.py'
2021-07-10T07:37:39,979   adding 'msmtools/analysis/sparse/decomposition_test.py'
2021-07-10T07:37:39,981   adding 'msmtools/analysis/sparse/expectations.py'
2021-07-10T07:37:39,983   adding 'msmtools/analysis/sparse/expectations_test.py'
2021-07-10T07:37:39,984   adding 'msmtools/analysis/sparse/fingerprints.py'
2021-07-10T07:37:39,986   adding 'msmtools/analysis/sparse/fingerprints_test.py'
2021-07-10T07:37:39,988   adding 'msmtools/analysis/sparse/mean_first_passage_time.py'
2021-07-10T07:37:39,989   adding 'msmtools/analysis/sparse/mean_first_passage_time_test.py'
2021-07-10T07:37:39,990   adding 'msmtools/analysis/sparse/stationary_vector.py'
2021-07-10T07:37:39,992   adding 'msmtools/analysis/sparse/stationary_vector_test.py'
2021-07-10T07:37:39,994   adding 'msmtools/dtraj/__init__.py'
2021-07-10T07:37:39,996   adding 'msmtools/dtraj/api.py'
2021-07-10T07:37:39,998   adding 'msmtools/estimation/__init__.py'
2021-07-10T07:37:40,003   adding 'msmtools/estimation/api.py'
2021-07-10T07:37:40,006   adding 'msmtools/estimation/dense/__init__.py'
2021-07-10T07:37:40,007   adding 'msmtools/estimation/dense/bootstrapping.py'
2021-07-10T07:37:40,009   adding 'msmtools/estimation/dense/covariance.py'
2021-07-10T07:37:40,010   adding 'msmtools/estimation/dense/covariance_test.py'
2021-07-10T07:37:40,056   adding 'msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:37:40,059   adding 'msmtools/estimation/dense/sampler_nrev.py'
2021-07-10T07:37:40,202   adding 'msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:37:40,360   adding 'msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:37:40,368   adding 'msmtools/estimation/dense/tmatrix_sampler.py'
2021-07-10T07:37:40,369   adding 'msmtools/estimation/dense/tmatrix_sampler_test.py'
2021-07-10T07:37:40,371   adding 'msmtools/estimation/dense/transition_matrix.py'
2021-07-10T07:37:40,373   adding 'msmtools/estimation/sparse/__init__.py'
2021-07-10T07:37:40,374   adding 'msmtools/estimation/sparse/connectivity.py'
2021-07-10T07:37:40,376   adding 'msmtools/estimation/sparse/connectivity_test.py'
2021-07-10T07:37:40,378   adding 'msmtools/estimation/sparse/count_matrix.py'
2021-07-10T07:37:40,380   adding 'msmtools/estimation/sparse/count_matrix_test.py'
2021-07-10T07:37:40,381   adding 'msmtools/estimation/sparse/effective_counts.py'
2021-07-10T07:37:40,383   adding 'msmtools/estimation/sparse/likelihood.py'
2021-07-10T07:37:40,384   adding 'msmtools/estimation/sparse/likelihood_test.py'
2021-07-10T07:37:40,437   adding 'msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:37:40,496   adding 'msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T07:37:40,499   adding 'msmtools/estimation/sparse/prior.py'
2021-07-10T07:37:40,500   adding 'msmtools/estimation/sparse/prior_test.py'
2021-07-10T07:37:40,502   adding 'msmtools/estimation/sparse/transition_matrix.py'
2021-07-10T07:37:40,503   adding 'msmtools/estimation/sparse/transition_matrix_test.py'
2021-07-10T07:37:40,505   adding 'msmtools/flux/__init__.py'
2021-07-10T07:37:40,507   adding 'msmtools/flux/api.py'
2021-07-10T07:37:40,510   adding 'msmtools/flux/reactive_flux.py'
2021-07-10T07:37:40,511   adding 'msmtools/flux/reactive_flux_test.py'
2021-07-10T07:37:40,513   adding 'msmtools/flux/dense/__init__.py'
2021-07-10T07:37:40,515   adding 'msmtools/flux/dense/tpt.py'
2021-07-10T07:37:40,516   adding 'msmtools/flux/dense/tpt_test.py'
2021-07-10T07:37:40,519   adding 'msmtools/flux/sparse/__init__.py'
2021-07-10T07:37:40,521   adding 'msmtools/flux/sparse/pathways.py'
2021-07-10T07:37:40,522   adding 'msmtools/flux/sparse/pathways_test.py'
2021-07-10T07:37:40,524   adding 'msmtools/flux/sparse/tpt.py'
2021-07-10T07:37:40,526   adding 'msmtools/flux/sparse/tpt_test.py'
2021-07-10T07:37:40,528   adding 'msmtools/generation/__init__.py'
2021-07-10T07:37:40,530   adding 'msmtools/generation/api.py'
2021-07-10T07:37:40,532   adding 'msmtools/util/__init__.py'
2021-07-10T07:37:40,534   adding 'msmtools/util/annotators.py'
2021-07-10T07:37:40,536   adding 'msmtools/util/exceptions.py'
2021-07-10T07:37:40,537   adding 'msmtools/util/numeric.py'
2021-07-10T07:37:40,539   adding 'msmtools/util/statistics.py'
2021-07-10T07:37:40,541   adding 'msmtools/util/types.py'
2021-07-10T07:37:40,543   adding 'msmtools/util/matrix/__init__.py'
2021-07-10T07:37:40,545   adding 'msmtools/util/matrix/matrix.py'
2021-07-10T07:37:40,547   adding 'msmtools/util/matrix/matrix_test.py'
2021-07-10T07:37:40,550   adding 'msmtools-1.1.dist-info/LICENSE.txt'
2021-07-10T07:37:40,552   adding 'msmtools-1.1.dist-info/METADATA'
2021-07-10T07:37:40,553   adding 'msmtools-1.1.dist-info/WHEEL'
2021-07-10T07:37:40,554   adding 'msmtools-1.1.dist-info/top_level.txt'
2021-07-10T07:37:40,555   adding 'msmtools-1.1.dist-info/RECORD'
2021-07-10T07:37:40,576   removing build/bdist.linux-armv7l/wheel
2021-07-10T07:37:40,757   Building wheel for msmtools (setup.py): finished with status 'done'
2021-07-10T07:37:40,773   Created wheel for msmtools: filename=msmtools-1.1-cp39-cp39-linux_armv7l.whl size=1055483 sha256=4dc7c4c14b9091aaa757f8fda33e45f0744854c2395ea1e7f3fdc7d8ff821e36
2021-07-10T07:37:40,773   Stored in directory: /tmp/pip-ephem-wheel-cache-sij_uih1/wheels/21/b8/86/c2339ce57bcf6ef48c0a23bbd8c3144d38ba288ca355646e3e
2021-07-10T07:37:40,786 Successfully built msmtools
2021-07-10T07:37:40,824 Removed build tracker: '/tmp/pip-req-tracker-ed98ignp'