2021-07-10T07:52:27,851 Created temporary directory: /tmp/pip-ephem-wheel-cache-g5vzjbdj 2021-07-10T07:52:27,854 Created temporary directory: /tmp/pip-req-tracker-431xyci8 2021-07-10T07:52:27,855 Initialized build tracking at /tmp/pip-req-tracker-431xyci8 2021-07-10T07:52:27,855 Created build tracker: /tmp/pip-req-tracker-431xyci8 2021-07-10T07:52:27,855 Entered build tracker: /tmp/pip-req-tracker-431xyci8 2021-07-10T07:52:27,856 Created temporary directory: /tmp/pip-wheel-_kgvtzq7 2021-07-10T07:52:27,893 1 location(s) to search for versions of coral: 2021-07-10T07:52:27,893 * https://pypi.org/simple/coral/ 2021-07-10T07:52:27,894 Fetching project page and analyzing links: https://pypi.org/simple/coral/ 2021-07-10T07:52:27,894 Getting page https://pypi.org/simple/coral/ 2021-07-10T07:52:27,896 Found index url https://pypi.org/simple 2021-07-10T07:52:28,084 Found link https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42 (from https://pypi.org/simple/coral/), version: 0.1.0 2021-07-10T07:52:28,085 Found link https://files.pythonhosted.org/packages/5e/32/a978f786759decac49a3c01bc90b0ee0ca3d7057f144a8c34bcf8a04fcfa/coral-0.2.1.tar.gz#sha256=e276992eb9b27b444f610021fd56b2f2ee07c2a0f9adfcefea9924f470756e93 (from https://pypi.org/simple/coral/), version: 0.2.1 2021-07-10T07:52:28,085 Found link https://files.pythonhosted.org/packages/2e/93/013c15b7a8f45cf10db8407bcd093a36509c5d8e5401d549b3d9dd56188e/coral-0.3.0.tar.gz#sha256=defd18ef9b8edd3f4bc384a12a871a8678ab33ca26f822246730bd2fefeb5e58 (from https://pypi.org/simple/coral/), version: 0.3.0 2021-07-10T07:52:28,085 Found link https://files.pythonhosted.org/packages/0d/f0/fae5d6f962af4feca22ead719f30b8bffe9c72b39fc31c7ed784d367a4e5/coral-0.3.1.tar.gz#sha256=c2333204fcb0e538f71dc96e0ea2c4558a8f421e4b5c236c1757d8a9c263d0d6 (from https://pypi.org/simple/coral/), version: 0.3.1 2021-07-10T07:52:28,085 Found link https://files.pythonhosted.org/packages/93/9c/b1b04b1b899d4bbfa1ec0253d64fa314eb23d23a34a0e07cee70b9f2ae35/coral-0.3.2.tar.gz#sha256=4778b352cb88a45b13e0793305e3c9909538238be5dad487fa3a9aa3bd9c417a (from https://pypi.org/simple/coral/), version: 0.3.2 2021-07-10T07:52:28,086 Found link https://files.pythonhosted.org/packages/dd/eb/cab2e724fe9df60cea55d5df16a12999cb302e628f4069623cf4b3022b96/coral-0.3.3.tar.gz#sha256=5ba04b738b3b66c4e352e9e8a952c0f18c5199957c41babb891417f065a2e3a6 (from https://pypi.org/simple/coral/), version: 0.3.3 2021-07-10T07:52:28,086 Found link https://files.pythonhosted.org/packages/e0/98/e39408ac64c87765767caa582aff07b66d2f31329cb1647712c44fa99f1c/coral-0.3.4.tar.gz#sha256=d5b9123939c2a90b7bc195a58981a7a9c174d18325ac659458ecdba0602ac56c (from https://pypi.org/simple/coral/), version: 0.3.4 2021-07-10T07:52:28,086 Found link https://files.pythonhosted.org/packages/4c/3e/c067cd40b343c9f28f73a9601295d7ccca025ce4013d881d955a5ce7dfdc/coral-0.4.0.tar.gz#sha256=bc21e2ec04ed2497ab4e92877b900d9fe40352d56fd014928b7ae25946c46d5d (from https://pypi.org/simple/coral/), version: 0.4.0 2021-07-10T07:52:28,087 Found link https://files.pythonhosted.org/packages/81/3d/26bb52490da33b7045eafb6b130ae68bc05b65fbc2d17e2ea57f57f98291/coral-0.4.1.tar.gz#sha256=41ed525ee1a82c3624bdd0fc44d08aab87e3ab145505f91852c20e667a61b354 (from https://pypi.org/simple/coral/), version: 0.4.1 2021-07-10T07:52:28,087 Found link https://files.pythonhosted.org/packages/d0/36/89f1f3a35c9dc240f7ec72b157c7937a50fd4a884ff81470ecfa21f7d3f6/coral-0.4.2.tar.gz#sha256=14a5cafb8f177377df1536104bf895dc49111c76db60c2797170c990ea19fdb7 (from https://pypi.org/simple/coral/), version: 0.4.2 2021-07-10T07:52:28,087 Found link https://files.pythonhosted.org/packages/55/bb/dc671afad82512788ef48ac860bd0cacff56a7f168fe2dfa0135af8a14de/coral-0.4.3.tar.gz#sha256=8d6a7abb65ad671e5aeabcc9f2594a78baf0aa1007e9e1ece96894255eb1362e (from https://pypi.org/simple/coral/), version: 0.4.3 2021-07-10T07:52:28,087 Found link https://files.pythonhosted.org/packages/ef/3a/f46fe8052c0de4303554be16f07e9dc12c3fec80ed7672ec0a27e87ae04f/coral-0.5.0.tar.gz#sha256=f957e10217d53650219372f8def5a415064e66e1ad3a795a7489bdbea7fac38d (from https://pypi.org/simple/coral/), version: 0.5.0 2021-07-10T07:52:28,088 Skipping link: not a file: https://pypi.org/simple/coral/ 2021-07-10T07:52:28,107 Given no hashes to check 1 links for project 'coral': discarding no candidates 2021-07-10T07:52:28,126 Collecting coral==0.1.0 2021-07-10T07:52:28,127 Created temporary directory: /tmp/pip-unpack-1rryqueo 2021-07-10T07:52:28,302 Downloading coral-0.1.0.tar.gz (121 kB) 2021-07-10T07:52:28,488 Added coral==0.1.0 from https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42 to build tracker '/tmp/pip-req-tracker-431xyci8' 2021-07-10T07:52:28,489 Running setup.py (path:/tmp/pip-wheel-_kgvtzq7/coral_f8e5a4f908b44ea38a75e61d80402360/setup.py) egg_info for package coral 2021-07-10T07:52:28,490 Created temporary directory: /tmp/pip-pip-egg-info-d1fusrxl 2021-07-10T07:52:28,490 Running command python setup.py egg_info 2021-07-10T07:52:29,683 running egg_info 2021-07-10T07:52:29,685 creating /tmp/pip-pip-egg-info-d1fusrxl/coral.egg-info 2021-07-10T07:52:29,686 writing /tmp/pip-pip-egg-info-d1fusrxl/coral.egg-info/PKG-INFO 2021-07-10T07:52:29,688 writing dependency_links to /tmp/pip-pip-egg-info-d1fusrxl/coral.egg-info/dependency_links.txt 2021-07-10T07:52:29,690 writing requirements to /tmp/pip-pip-egg-info-d1fusrxl/coral.egg-info/requires.txt 2021-07-10T07:52:29,691 writing top-level names to /tmp/pip-pip-egg-info-d1fusrxl/coral.egg-info/top_level.txt 2021-07-10T07:52:29,693 writing manifest file '/tmp/pip-pip-egg-info-d1fusrxl/coral.egg-info/SOURCES.txt' 2021-07-10T07:52:29,848 reading manifest file '/tmp/pip-pip-egg-info-d1fusrxl/coral.egg-info/SOURCES.txt' 2021-07-10T07:52:29,850 reading manifest template 'MANIFEST.in' 2021-07-10T07:52:29,855 writing manifest file '/tmp/pip-pip-egg-info-d1fusrxl/coral.egg-info/SOURCES.txt' 2021-07-10T07:52:29,947 Source in /tmp/pip-wheel-_kgvtzq7/coral_f8e5a4f908b44ea38a75e61d80402360 has version 0.1.0, which satisfies requirement coral==0.1.0 from https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42 2021-07-10T07:52:29,949 Removed coral==0.1.0 from https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42 from build tracker '/tmp/pip-req-tracker-431xyci8' 2021-07-10T07:52:29,953 Created temporary directory: /tmp/pip-unpack-tb95a_ry 2021-07-10T07:52:29,953 Building wheels for collected packages: coral 2021-07-10T07:52:29,957 Created temporary directory: /tmp/pip-wheel-0enpym9o 2021-07-10T07:52:29,958 Building wheel for coral (setup.py): started 2021-07-10T07:52:29,958 Destination directory: /tmp/pip-wheel-0enpym9o 2021-07-10T07:52:29,959 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-_kgvtzq7/coral_f8e5a4f908b44ea38a75e61d80402360/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-_kgvtzq7/coral_f8e5a4f908b44ea38a75e61d80402360/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0enpym9o 2021-07-10T07:52:31,139 running bdist_wheel 2021-07-10T07:52:31,144 running build 2021-07-10T07:52:31,144 running build_py 2021-07-10T07:52:31,279 creating build 2021-07-10T07:52:31,279 creating build/lib.linux-armv7l-3.9 2021-07-10T07:52:31,280 creating build/lib.linux-armv7l-3.9/coral 2021-07-10T07:52:31,282 copying coral/__init__.py -> build/lib.linux-armv7l-3.9/coral 2021-07-10T07:52:31,284 creating build/lib.linux-armv7l-3.9/coral/analysis 2021-07-10T07:52:31,285 copying coral/analysis/utils.py -> build/lib.linux-armv7l-3.9/coral/analysis 2021-07-10T07:52:31,288 copying coral/analysis/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis 2021-07-10T07:52:31,290 creating build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T07:52:31,291 copying coral/analysis/_sequence/melting_temp.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T07:52:31,294 copying coral/analysis/_sequence/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T07:52:31,296 copying coral/analysis/_sequence/repeats.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T07:52:31,298 copying coral/analysis/_sequence/tm_params.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T07:52:31,301 creating build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T07:52:31,302 copying coral/analysis/_sequencing/needle.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T07:52:31,304 copying coral/analysis/_sequencing/align.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T07:52:31,307 copying coral/analysis/_sequencing/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T07:52:31,309 copying coral/analysis/_sequencing/sanger.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T07:52:31,312 creating build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T07:52:31,313 copying coral/analysis/_structure/vienna.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T07:52:31,316 copying coral/analysis/_structure/dimers.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T07:52:31,318 copying coral/analysis/_structure/structure_windows.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T07:52:31,320 copying coral/analysis/_structure/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T07:52:31,322 copying coral/analysis/_structure/nupack.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T07:52:31,326 creating build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T07:52:31,327 copying coral/constants/genbank.py -> build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T07:52:31,329 copying coral/constants/__init__.py -> build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T07:52:31,331 copying coral/constants/molecular_bio.py -> build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T07:52:31,333 copying coral/constants/restriction_sites.py -> build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T07:52:31,336 creating build/lib.linux-armv7l-3.9/coral/database 2021-07-10T07:52:31,337 copying coral/database/_yeast.py -> build/lib.linux-armv7l-3.9/coral/database 2021-07-10T07:52:31,340 copying coral/database/_entrez.py -> build/lib.linux-armv7l-3.9/coral/database 2021-07-10T07:52:31,342 copying coral/database/_rebase.py -> build/lib.linux-armv7l-3.9/coral/database 2021-07-10T07:52:31,345 copying coral/database/__init__.py -> build/lib.linux-armv7l-3.9/coral/database 2021-07-10T07:52:31,348 creating build/lib.linux-armv7l-3.9/coral/design 2021-07-10T07:52:31,349 copying coral/design/_gibson.py -> build/lib.linux-armv7l-3.9/coral/design 2021-07-10T07:52:31,351 copying coral/design/__init__.py -> build/lib.linux-armv7l-3.9/coral/design 2021-07-10T07:52:31,353 copying coral/design/_primers.py -> build/lib.linux-armv7l-3.9/coral/design 2021-07-10T07:52:31,357 creating build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis 2021-07-10T07:52:31,358 copying coral/design/_oligo_synthesis/oligo_assembly.py -> build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis 2021-07-10T07:52:31,361 copying coral/design/_oligo_synthesis/__init__.py -> build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis 2021-07-10T07:52:31,363 creating build/lib.linux-armv7l-3.9/coral/design/_sequence_generation 2021-07-10T07:52:31,364 copying coral/design/_sequence_generation/__init__.py -> build/lib.linux-armv7l-3.9/coral/design/_sequence_generation 2021-07-10T07:52:31,367 copying coral/design/_sequence_generation/random_sequences.py -> build/lib.linux-armv7l-3.9/coral/design/_sequence_generation 2021-07-10T07:52:31,370 creating build/lib.linux-armv7l-3.9/coral/seqio 2021-07-10T07:52:31,371 copying coral/seqio/_dna.py -> build/lib.linux-armv7l-3.9/coral/seqio 2021-07-10T07:52:31,374 copying coral/seqio/__init__.py -> build/lib.linux-armv7l-3.9/coral/seqio 2021-07-10T07:52:31,377 creating build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T07:52:31,378 copying coral/reaction/_central_dogma.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T07:52:31,380 copying coral/reaction/_gibson.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T07:52:31,383 copying coral/reaction/_restriction.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T07:52:31,385 copying coral/reaction/utils.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T07:52:31,387 copying coral/reaction/__init__.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T07:52:31,389 copying coral/reaction/_pcr.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T07:52:31,391 copying coral/reaction/_oligo_assembly.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T07:52:31,394 copying coral/reaction/_resect.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T07:52:31,397 creating build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T07:52:31,398 copying coral/sequence/_dna.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T07:52:31,402 copying coral/sequence/__init__.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T07:52:31,404 copying coral/sequence/_peptide.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T07:52:31,406 copying coral/sequence/_rna.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T07:52:31,408 copying coral/sequence/_sequence.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T07:52:31,411 running egg_info 2021-07-10T07:52:31,426 writing coral.egg-info/PKG-INFO 2021-07-10T07:52:31,428 writing dependency_links to coral.egg-info/dependency_links.txt 2021-07-10T07:52:31,430 writing requirements to coral.egg-info/requires.txt 2021-07-10T07:52:31,432 writing top-level names to coral.egg-info/top_level.txt 2021-07-10T07:52:31,445 reading manifest file 'coral.egg-info/SOURCES.txt' 2021-07-10T07:52:31,449 reading manifest template 'MANIFEST.in' 2021-07-10T07:52:31,455 writing manifest file 'coral.egg-info/SOURCES.txt' 2021-07-10T07:52:31,460 copying coral/analysis/_sequencing/calign.c -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T07:52:31,474 creating build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T07:52:31,474 copying coral/analysis/_sequencing/data/BLOSUM62 -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T07:52:31,477 copying coral/analysis/_sequencing/data/DNA -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T07:52:31,479 copying coral/analysis/_sequencing/data/DNA_simple -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T07:52:31,481 copying coral/analysis/_sequencing/data/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T07:52:31,491 running build_ext 2021-07-10T07:52:31,553 building 'coral.analysis._sequencing.calign' extension 2021-07-10T07:52:31,553 creating build/temp.linux-armv7l-3.9 2021-07-10T07:52:31,554 creating build/temp.linux-armv7l-3.9/coral 2021-07-10T07:52:31,555 creating build/temp.linux-armv7l-3.9/coral/analysis 2021-07-10T07:52:31,556 creating build/temp.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T07:52:31,557 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c coral/analysis/_sequencing/calign.c -o build/temp.linux-armv7l-3.9/coral/analysis/_sequencing/calign.o 2021-07-10T07:52:31,940 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T07:52:31,940 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T07:52:31,940 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T07:52:31,940 from coral/analysis/_sequencing/calign.c:314: 2021-07-10T07:52:31,941 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T07:52:31,941 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T07:52:31,941 | ^~~~~~~ 2021-07-10T07:52:32,036 coral/analysis/_sequencing/calign.c: In function ‘__pyx_pf_5coral_8analysis_11_sequencing_6calign_2aligner’: 2021-07-10T07:52:32,037 coral/analysis/_sequencing/calign.c:3632:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T07:52:32,038 3632 | for (__pyx_t_19 = 1; __pyx_t_19 < __pyx_t_7; __pyx_t_19+=1) { 2021-07-10T07:52:32,038 | ^ 2021-07-10T07:52:32,039 coral/analysis/_sequencing/calign.c:3652:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T07:52:32,039 3652 | for (__pyx_t_20 = 1; __pyx_t_20 < __pyx_t_6; __pyx_t_20+=1) { 2021-07-10T07:52:32,040 | ^ 2021-07-10T07:52:32,114 coral/analysis/_sequencing/calign.c:4369:16: warning: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2021-07-10T07:52:32,115 4369 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-10T07:52:32,115 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,115 | PyBytes_FromStringAndSize 2021-07-10T07:52:32,117 coral/analysis/_sequencing/calign.c:4369:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T07:52:32,117 4369 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-10T07:52:32,117 | ^ 2021-07-10T07:52:32,119 coral/analysis/_sequencing/calign.c:4378:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T07:52:32,119 4378 | __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-10T07:52:32,119 | ^ 2021-07-10T07:52:32,135 coral/analysis/_sequencing/calign.c:4387:21: warning: implicit declaration of function ‘PyString_AS_STRING’; did you mean ‘PyBytes_AS_STRING’? [-Wimplicit-function-declaration] 2021-07-10T07:52:32,136 4387 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2021-07-10T07:52:32,136 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,136 | PyBytes_AS_STRING 2021-07-10T07:52:32,138 coral/analysis/_sequencing/calign.c:4387:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T07:52:32,138 4387 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2021-07-10T07:52:32,138 | ^ 2021-07-10T07:52:32,140 coral/analysis/_sequencing/calign.c:4396:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T07:52:32,140 4396 | __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai); 2021-07-10T07:52:32,140 | ^ 2021-07-10T07:52:32,168 coral/analysis/_sequencing/calign.c:4651:3: warning: implicit declaration of function ‘_PyString_Resize’ [-Wimplicit-function-declaration] 2021-07-10T07:52:32,169 4651 | _PyString_Resize((&__pyx_v_aj), __pyx_v_align_counter); 2021-07-10T07:52:32,169 | ^~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,233 coral/analysis/_sequencing/calign.c: In function ‘__Pyx_Raise’: 2021-07-10T07:52:32,237 coral/analysis/_sequencing/calign.c:7933:9: warning: ‘PyEval_CallObjectWithKeywords’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,238 7933 | owned_instance = PyEval_CallObject(type, args); 2021-07-10T07:52:32,238 | ^~~~~~~~~~~~~~ 2021-07-10T07:52:32,238 In file included from /usr/include/python3.9/Python.h:145, 2021-07-10T07:52:32,238 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,238 /usr/include/python3.9/ceval.h:17:43: note: declared here 2021-07-10T07:52:32,238 17 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyEval_CallObjectWithKeywords( 2021-07-10T07:52:32,238 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,309 coral/analysis/_sequencing/calign.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T07:52:32,313 coral/analysis/_sequencing/calign.c:8866:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,314 8866 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,314 | ^ 2021-07-10T07:52:32,314 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,314 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,314 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,314 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T07:52:32,315 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T07:52:32,315 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,319 coral/analysis/_sequencing/calign.c:8866:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,320 8866 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,320 | ^ 2021-07-10T07:52:32,320 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,320 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,320 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,320 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T07:52:32,320 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T07:52:32,321 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,325 coral/analysis/_sequencing/calign.c:8866:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,325 8866 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,325 | ^ 2021-07-10T07:52:32,325 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,326 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,326 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,326 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T07:52:32,326 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T07:52:32,326 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,330 coral/analysis/_sequencing/calign.c:8866:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,331 8866 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,331 | ^ 2021-07-10T07:52:32,331 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,331 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,331 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,331 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T07:52:32,331 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T07:52:32,331 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,336 coral/analysis/_sequencing/calign.c:8866:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,336 8866 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,336 | ^ 2021-07-10T07:52:32,336 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,336 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,337 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,337 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T07:52:32,337 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T07:52:32,337 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,341 coral/analysis/_sequencing/calign.c:8866:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,341 8866 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,342 | ^ 2021-07-10T07:52:32,342 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,342 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,342 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,342 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T07:52:32,342 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T07:52:32,342 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,348 coral/analysis/_sequencing/calign.c:8882:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,348 8882 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,348 | ^ 2021-07-10T07:52:32,349 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,349 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,349 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,349 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T07:52:32,349 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T07:52:32,349 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,353 coral/analysis/_sequencing/calign.c:8882:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,354 8882 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,354 | ^ 2021-07-10T07:52:32,354 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,354 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,354 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,354 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T07:52:32,354 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T07:52:32,354 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,359 coral/analysis/_sequencing/calign.c:8882:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,359 8882 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,359 | ^ 2021-07-10T07:52:32,359 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,359 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,360 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,360 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T07:52:32,360 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T07:52:32,360 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,364 coral/analysis/_sequencing/calign.c:8882:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,365 8882 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,365 | ^ 2021-07-10T07:52:32,365 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,365 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,365 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,365 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T07:52:32,365 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T07:52:32,365 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,370 coral/analysis/_sequencing/calign.c:8882:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,370 8882 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,370 | ^ 2021-07-10T07:52:32,370 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,370 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,371 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,371 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T07:52:32,371 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T07:52:32,371 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,375 coral/analysis/_sequencing/calign.c:8882:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T07:52:32,375 8882 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T07:52:32,376 | ^ 2021-07-10T07:52:32,376 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T07:52:32,376 from /usr/include/python3.9/Python.h:97, 2021-07-10T07:52:32,376 from coral/analysis/_sequencing/calign.c:16: 2021-07-10T07:52:32,376 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T07:52:32,376 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T07:52:32,376 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T07:52:32,537 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T07:52:32,538 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T07:52:32,538 from coral/analysis/_sequencing/calign.c:314: 2021-07-10T07:52:32,538 At top level: 2021-07-10T07:52:32,540 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T07:52:32,541 1464 | _import_array(void) 2021-07-10T07:52:32,554 | ^~~~~~~~~~~~~ 2021-07-10T07:52:36,240 coral/analysis/_sequencing/calign.c: In function ‘__pyx_pf_5coral_8analysis_11_sequencing_6calign_2aligner.constprop’: 2021-07-10T07:52:36,242 coral/analysis/_sequencing/calign.c:4415:13: warning: ‘__pyx_v_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-10T07:52:36,242 4415 | } else if (unlikely(__pyx_t_19 >= __pyx_pybuffernd_pointer.diminfo[1].shape)) __pyx_t_56 = 1; 2021-07-10T07:52:36,243 | ^ 2021-07-10T07:52:36,245 coral/analysis/_sequencing/calign.c:4411:13: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-10T07:52:36,245 4411 | } else if (unlikely(__pyx_t_20 >= __pyx_pybuffernd_pointer.diminfo[0].shape)) __pyx_t_56 = 0; 2021-07-10T07:52:36,245 | ^ 2021-07-10T07:52:36,247 coral/analysis/_sequencing/calign.c:4098:3: warning: ‘__pyx_v_imethod’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-10T07:52:36,248 4098 | switch (__pyx_v_imethod) { 2021-07-10T07:52:36,248 | ^~~~~~ 2021-07-10T07:52:39,738 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/coral/analysis/_sequencing/calign.o -o build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/calign.cpython-39-arm-linux-gnueabihf.so 2021-07-10T07:52:39,874 installing to build/bdist.linux-armv7l/wheel 2021-07-10T07:52:39,874 running install 2021-07-10T07:52:39,876 running install_lib 2021-07-10T07:52:39,880 creating build/bdist.linux-armv7l 2021-07-10T07:52:39,880 creating build/bdist.linux-armv7l/wheel 2021-07-10T07:52:39,882 creating build/bdist.linux-armv7l/wheel/coral 2021-07-10T07:52:39,883 creating build/bdist.linux-armv7l/wheel/coral/design 2021-07-10T07:52:39,885 creating build/bdist.linux-armv7l/wheel/coral/design/_oligo_synthesis 2021-07-10T07:52:39,886 copying build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis/oligo_assembly.py -> build/bdist.linux-armv7l/wheel/coral/design/_oligo_synthesis 2021-07-10T07:52:39,889 copying build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis/__init__.py -> build/bdist.linux-armv7l/wheel/coral/design/_oligo_synthesis 2021-07-10T07:52:39,891 copying build/lib.linux-armv7l-3.9/coral/design/_gibson.py -> build/bdist.linux-armv7l/wheel/coral/design 2021-07-10T07:52:39,893 creating build/bdist.linux-armv7l/wheel/coral/design/_sequence_generation 2021-07-10T07:52:39,894 copying build/lib.linux-armv7l-3.9/coral/design/_sequence_generation/__init__.py -> build/bdist.linux-armv7l/wheel/coral/design/_sequence_generation 2021-07-10T07:52:39,896 copying build/lib.linux-armv7l-3.9/coral/design/_sequence_generation/random_sequences.py -> build/bdist.linux-armv7l/wheel/coral/design/_sequence_generation 2021-07-10T07:52:39,898 copying build/lib.linux-armv7l-3.9/coral/design/__init__.py -> build/bdist.linux-armv7l/wheel/coral/design 2021-07-10T07:52:39,900 copying build/lib.linux-armv7l-3.9/coral/design/_primers.py -> build/bdist.linux-armv7l/wheel/coral/design 2021-07-10T07:52:39,903 creating build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T07:52:39,904 copying build/lib.linux-armv7l-3.9/coral/reaction/_central_dogma.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T07:52:39,906 copying build/lib.linux-armv7l-3.9/coral/reaction/_gibson.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T07:52:39,908 copying build/lib.linux-armv7l-3.9/coral/reaction/_restriction.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T07:52:39,910 copying build/lib.linux-armv7l-3.9/coral/reaction/utils.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T07:52:39,913 copying build/lib.linux-armv7l-3.9/coral/reaction/__init__.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T07:52:39,915 copying build/lib.linux-armv7l-3.9/coral/reaction/_pcr.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T07:52:39,917 copying build/lib.linux-armv7l-3.9/coral/reaction/_oligo_assembly.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T07:52:39,920 copying build/lib.linux-armv7l-3.9/coral/reaction/_resect.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T07:52:39,923 creating build/bdist.linux-armv7l/wheel/coral/analysis 2021-07-10T07:52:39,924 creating build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T07:52:39,925 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/needle.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T07:52:39,929 creating build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T07:52:39,930 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data/DNA_simple -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T07:52:39,932 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T07:52:39,933 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data/BLOSUM62 -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T07:52:39,936 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data/DNA -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T07:52:39,938 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/calign.c -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T07:52:39,953 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/calign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T07:52:39,968 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/align.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T07:52:39,970 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T07:52:39,972 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/sanger.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T07:52:39,975 creating build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T07:52:39,976 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/vienna.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T07:52:39,979 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/dimers.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T07:52:39,981 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/structure_windows.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T07:52:39,983 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T07:52:39,985 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/nupack.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T07:52:39,988 copying build/lib.linux-armv7l-3.9/coral/analysis/utils.py -> build/bdist.linux-armv7l/wheel/coral/analysis 2021-07-10T07:52:39,990 copying build/lib.linux-armv7l-3.9/coral/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis 2021-07-10T07:52:39,992 creating build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T07:52:39,993 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequence/melting_temp.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T07:52:39,996 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequence/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T07:52:39,998 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequence/repeats.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T07:52:40,000 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequence/tm_params.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T07:52:40,003 copying build/lib.linux-armv7l-3.9/coral/__init__.py -> build/bdist.linux-armv7l/wheel/coral 2021-07-10T07:52:40,005 creating build/bdist.linux-armv7l/wheel/coral/seqio 2021-07-10T07:52:40,006 copying build/lib.linux-armv7l-3.9/coral/seqio/_dna.py -> build/bdist.linux-armv7l/wheel/coral/seqio 2021-07-10T07:52:40,009 copying build/lib.linux-armv7l-3.9/coral/seqio/__init__.py -> build/bdist.linux-armv7l/wheel/coral/seqio 2021-07-10T07:52:40,012 creating build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T07:52:40,013 copying build/lib.linux-armv7l-3.9/coral/database/_yeast.py -> build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T07:52:40,016 copying build/lib.linux-armv7l-3.9/coral/database/_entrez.py -> build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T07:52:40,018 copying build/lib.linux-armv7l-3.9/coral/database/_rebase.py -> build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T07:52:40,020 copying build/lib.linux-armv7l-3.9/coral/database/__init__.py -> build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T07:52:40,023 creating build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T07:52:40,024 copying build/lib.linux-armv7l-3.9/coral/sequence/_dna.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T07:52:40,028 copying build/lib.linux-armv7l-3.9/coral/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T07:52:40,030 copying build/lib.linux-armv7l-3.9/coral/sequence/_peptide.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T07:52:40,032 copying build/lib.linux-armv7l-3.9/coral/sequence/_rna.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T07:52:40,034 copying build/lib.linux-armv7l-3.9/coral/sequence/_sequence.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T07:52:40,038 creating build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T07:52:40,039 copying build/lib.linux-armv7l-3.9/coral/constants/genbank.py -> build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T07:52:40,041 copying build/lib.linux-armv7l-3.9/coral/constants/__init__.py -> build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T07:52:40,043 copying build/lib.linux-armv7l-3.9/coral/constants/molecular_bio.py -> build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T07:52:40,045 copying build/lib.linux-armv7l-3.9/coral/constants/restriction_sites.py -> build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T07:52:40,047 running install_egg_info 2021-07-10T07:52:40,056 Copying coral.egg-info to build/bdist.linux-armv7l/wheel/coral-0.1.0-py3.9.egg-info 2021-07-10T07:52:40,068 running install_scripts 2021-07-10T07:52:40,181 creating build/bdist.linux-armv7l/wheel/coral-0.1.0.dist-info/WHEEL 2021-07-10T07:52:40,183 creating '/tmp/pip-wheel-0enpym9o/coral-0.1.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T07:52:40,186 adding 'coral/__init__.py' 2021-07-10T07:52:40,188 adding 'coral/analysis/__init__.py' 2021-07-10T07:52:40,189 adding 'coral/analysis/utils.py' 2021-07-10T07:52:40,190 adding 'coral/analysis/_sequence/__init__.py' 2021-07-10T07:52:40,192 adding 'coral/analysis/_sequence/melting_temp.py' 2021-07-10T07:52:40,193 adding 'coral/analysis/_sequence/repeats.py' 2021-07-10T07:52:40,195 adding 'coral/analysis/_sequence/tm_params.py' 2021-07-10T07:52:40,197 adding 'coral/analysis/_sequencing/__init__.py' 2021-07-10T07:52:40,199 adding 'coral/analysis/_sequencing/align.py' 2021-07-10T07:52:40,239 adding 'coral/analysis/_sequencing/calign.c' 2021-07-10T07:52:40,333 adding 'coral/analysis/_sequencing/calign.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T07:52:40,338 adding 'coral/analysis/_sequencing/needle.py' 2021-07-10T07:52:40,341 adding 'coral/analysis/_sequencing/sanger.py' 2021-07-10T07:52:40,343 adding 'coral/analysis/_sequencing/data/BLOSUM62' 2021-07-10T07:52:40,344 adding 'coral/analysis/_sequencing/data/DNA' 2021-07-10T07:52:40,345 adding 'coral/analysis/_sequencing/data/DNA_simple' 2021-07-10T07:52:40,346 adding 'coral/analysis/_sequencing/data/__init__.py' 2021-07-10T07:52:40,348 adding 'coral/analysis/_structure/__init__.py' 2021-07-10T07:52:40,349 adding 'coral/analysis/_structure/dimers.py' 2021-07-10T07:52:40,351 adding 'coral/analysis/_structure/nupack.py' 2021-07-10T07:52:40,352 adding 'coral/analysis/_structure/structure_windows.py' 2021-07-10T07:52:40,353 adding 'coral/analysis/_structure/vienna.py' 2021-07-10T07:52:40,355 adding 'coral/constants/__init__.py' 2021-07-10T07:52:40,357 adding 'coral/constants/genbank.py' 2021-07-10T07:52:40,359 adding 'coral/constants/molecular_bio.py' 2021-07-10T07:52:40,360 adding 'coral/constants/restriction_sites.py' 2021-07-10T07:52:40,362 adding 'coral/database/__init__.py' 2021-07-10T07:52:40,363 adding 'coral/database/_entrez.py' 2021-07-10T07:52:40,364 adding 'coral/database/_rebase.py' 2021-07-10T07:52:40,366 adding 'coral/database/_yeast.py' 2021-07-10T07:52:40,368 adding 'coral/design/__init__.py' 2021-07-10T07:52:40,370 adding 'coral/design/_gibson.py' 2021-07-10T07:52:40,372 adding 'coral/design/_primers.py' 2021-07-10T07:52:40,374 adding 'coral/design/_oligo_synthesis/__init__.py' 2021-07-10T07:52:40,376 adding 'coral/design/_oligo_synthesis/oligo_assembly.py' 2021-07-10T07:52:40,378 adding 'coral/design/_sequence_generation/__init__.py' 2021-07-10T07:52:40,380 adding 'coral/design/_sequence_generation/random_sequences.py' 2021-07-10T07:52:40,382 adding 'coral/reaction/__init__.py' 2021-07-10T07:52:40,383 adding 'coral/reaction/_central_dogma.py' 2021-07-10T07:52:40,385 adding 'coral/reaction/_gibson.py' 2021-07-10T07:52:40,387 adding 'coral/reaction/_oligo_assembly.py' 2021-07-10T07:52:40,388 adding 'coral/reaction/_pcr.py' 2021-07-10T07:52:40,389 adding 'coral/reaction/_resect.py' 2021-07-10T07:52:40,391 adding 'coral/reaction/_restriction.py' 2021-07-10T07:52:40,392 adding 'coral/reaction/utils.py' 2021-07-10T07:52:40,394 adding 'coral/seqio/__init__.py' 2021-07-10T07:52:40,396 adding 'coral/seqio/_dna.py' 2021-07-10T07:52:40,398 adding 'coral/sequence/__init__.py' 2021-07-10T07:52:40,402 adding 'coral/sequence/_dna.py' 2021-07-10T07:52:40,403 adding 'coral/sequence/_peptide.py' 2021-07-10T07:52:40,404 adding 'coral/sequence/_rna.py' 2021-07-10T07:52:40,408 adding 'coral/sequence/_sequence.py' 2021-07-10T07:52:40,410 adding 'coral-0.1.0.dist-info/METADATA' 2021-07-10T07:52:40,411 adding 'coral-0.1.0.dist-info/WHEEL' 2021-07-10T07:52:40,412 adding 'coral-0.1.0.dist-info/top_level.txt' 2021-07-10T07:52:40,413 adding 'coral-0.1.0.dist-info/RECORD' 2021-07-10T07:52:40,419 removing build/bdist.linux-armv7l/wheel 2021-07-10T07:52:40,558 Building wheel for coral (setup.py): finished with status 'done' 2021-07-10T07:52:40,564 Created wheel for coral: filename=coral-0.1.0-cp39-cp39-linux_armv7l.whl size=303349 sha256=82dc4faaa5c1c265273e8a32e3d51d3b3299be7cf67ea664b53ffa9ef54f4ece 2021-07-10T07:52:40,564 Stored in directory: /tmp/pip-ephem-wheel-cache-g5vzjbdj/wheels/8a/6e/db/149f49090c9c92b33f52efb00faab0093b88fbe7c8a928a354 2021-07-10T07:52:40,574 Successfully built coral 2021-07-10T07:52:40,586 Removed build tracker: '/tmp/pip-req-tracker-431xyci8'