2021-07-10T09:04:26,147 Created temporary directory: /tmp/pip-ephem-wheel-cache-k1bxints 2021-07-10T09:04:26,150 Created temporary directory: /tmp/pip-req-tracker-0qgt_imf 2021-07-10T09:04:26,151 Initialized build tracking at /tmp/pip-req-tracker-0qgt_imf 2021-07-10T09:04:26,151 Created build tracker: /tmp/pip-req-tracker-0qgt_imf 2021-07-10T09:04:26,151 Entered build tracker: /tmp/pip-req-tracker-0qgt_imf 2021-07-10T09:04:26,152 Created temporary directory: /tmp/pip-wheel-3tcrgtfz 2021-07-10T09:04:26,184 1 location(s) to search for versions of biom-format: 2021-07-10T09:04:26,184 * https://pypi.org/simple/biom-format/ 2021-07-10T09:04:26,185 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-10T09:04:26,185 Getting page https://pypi.org/simple/biom-format/ 2021-07-10T09:04:26,187 Found index url https://pypi.org/simple 2021-07-10T09:04:26,371 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-10T09:04:26,371 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-10T09:04:26,371 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-10T09:04:26,372 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-10T09:04:26,372 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-10T09:04:26,372 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-10T09:04:26,373 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-10T09:04:26,373 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-10T09:04:26,373 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-10T09:04:26,374 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-10T09:04:26,374 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-10T09:04:26,374 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-10T09:04:26,391 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-10T09:04:26,391 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-10T09:04:26,392 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-10T09:04:26,392 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-10T09:04:26,393 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-10T09:04:26,393 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-10T09:04:26,393 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-10T09:04:26,396 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-10T09:04:26,415 Collecting biom-format==2.1.5 2021-07-10T09:04:26,417 Created temporary directory: /tmp/pip-unpack-6vlt7grg 2021-07-10T09:04:26,652 Downloading biom-format-2.1.5.tar.gz (307 kB) 2021-07-10T09:04:26,974 Added biom-format==2.1.5 from https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 to build tracker '/tmp/pip-req-tracker-0qgt_imf' 2021-07-10T09:04:26,976 Running setup.py (path:/tmp/pip-wheel-3tcrgtfz/biom-format_e1af7374fb764ee3a06412ecfc8cf149/setup.py) egg_info for package biom-format 2021-07-10T09:04:26,976 Created temporary directory: /tmp/pip-pip-egg-info-09b3ntpq 2021-07-10T09:04:26,977 Running command python setup.py egg_info 2021-07-10T09:04:28,093 running egg_info 2021-07-10T09:04:28,096 creating /tmp/pip-pip-egg-info-09b3ntpq/biom_format.egg-info 2021-07-10T09:04:28,097 writing /tmp/pip-pip-egg-info-09b3ntpq/biom_format.egg-info/PKG-INFO 2021-07-10T09:04:28,099 writing dependency_links to /tmp/pip-pip-egg-info-09b3ntpq/biom_format.egg-info/dependency_links.txt 2021-07-10T09:04:28,100 writing entry points to /tmp/pip-pip-egg-info-09b3ntpq/biom_format.egg-info/entry_points.txt 2021-07-10T09:04:28,101 writing requirements to /tmp/pip-pip-egg-info-09b3ntpq/biom_format.egg-info/requires.txt 2021-07-10T09:04:28,102 writing top-level names to /tmp/pip-pip-egg-info-09b3ntpq/biom_format.egg-info/top_level.txt 2021-07-10T09:04:28,104 writing manifest file '/tmp/pip-pip-egg-info-09b3ntpq/biom_format.egg-info/SOURCES.txt' 2021-07-10T09:04:28,448 reading manifest file '/tmp/pip-pip-egg-info-09b3ntpq/biom_format.egg-info/SOURCES.txt' 2021-07-10T09:04:28,450 reading manifest template 'MANIFEST.in' 2021-07-10T09:04:28,461 no previously-included directories found matching 'docs/_build' 2021-07-10T09:04:28,462 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T09:04:28,463 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T09:04:28,463 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-10T09:04:28,463 adding license file 'COPYING.txt' 2021-07-10T09:04:28,468 writing manifest file '/tmp/pip-pip-egg-info-09b3ntpq/biom_format.egg-info/SOURCES.txt' 2021-07-10T09:04:28,574 Source in /tmp/pip-wheel-3tcrgtfz/biom-format_e1af7374fb764ee3a06412ecfc8cf149 has version 2.1.5, which satisfies requirement biom-format==2.1.5 from https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 2021-07-10T09:04:28,575 Removed biom-format==2.1.5 from https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 from build tracker '/tmp/pip-req-tracker-0qgt_imf' 2021-07-10T09:04:28,579 Created temporary directory: /tmp/pip-unpack-4so3pmdc 2021-07-10T09:04:28,580 Building wheels for collected packages: biom-format 2021-07-10T09:04:28,584 Created temporary directory: /tmp/pip-wheel-ge5c_sko 2021-07-10T09:04:28,585 Building wheel for biom-format (setup.py): started 2021-07-10T09:04:28,585 Destination directory: /tmp/pip-wheel-ge5c_sko 2021-07-10T09:04:28,585 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3tcrgtfz/biom-format_e1af7374fb764ee3a06412ecfc8cf149/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3tcrgtfz/biom-format_e1af7374fb764ee3a06412ecfc8cf149/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ge5c_sko 2021-07-10T09:04:29,691 running bdist_wheel 2021-07-10T09:04:29,892 running build 2021-07-10T09:04:29,892 running build_py 2021-07-10T09:04:30,024 creating build 2021-07-10T09:04:30,024 creating build/lib.linux-armv7l-3.9 2021-07-10T09:04:30,025 creating build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,026 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,029 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,035 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,037 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,039 copying biom/err.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,042 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,045 creating build/lib.linux-armv7l-3.9/tests 2021-07-10T09:04:30,046 copying tests/test_err.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T09:04:30,049 copying tests/test_util.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T09:04:30,052 copying tests/__init__.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T09:04:30,054 copying tests/test_parse.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T09:04:30,058 copying tests/test_table.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T09:04:30,066 creating build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,067 copying biom/cli/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,069 copying biom/cli/table_validator.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,072 copying biom/cli/__init__.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,074 copying biom/cli/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,076 copying biom/cli/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,078 copying biom/cli/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,080 copying biom/cli/table_head.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,082 copying biom/cli/uc_processor.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,084 copying biom/cli/table_converter.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,087 copying biom/cli/util.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,089 copying biom/cli/table_normalizer.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-10T09:04:30,091 creating build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,093 copying tests/test_cli/__init__.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,095 copying tests/test_cli/test_subset_table.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,097 copying tests/test_cli/test_uc_processor.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,099 copying tests/test_cli/test_summarize_table.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,101 copying tests/test_cli/test_add_metadata.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,104 copying tests/test_cli/test_table_converter.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,107 copying tests/test_cli/test_table_normalizer.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,109 copying tests/test_cli/test_validate_table.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,112 copying tests/test_cli/test_show_install_info.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-10T09:04:30,114 running egg_info 2021-07-10T09:04:30,128 writing biom_format.egg-info/PKG-INFO 2021-07-10T09:04:30,130 writing dependency_links to biom_format.egg-info/dependency_links.txt 2021-07-10T09:04:30,132 writing entry points to biom_format.egg-info/entry_points.txt 2021-07-10T09:04:30,133 writing requirements to biom_format.egg-info/requires.txt 2021-07-10T09:04:30,134 writing top-level names to biom_format.egg-info/top_level.txt 2021-07-10T09:04:30,143 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-10T09:04:30,146 reading manifest template 'MANIFEST.in' 2021-07-10T09:04:30,155 no previously-included directories found matching 'docs/_build' 2021-07-10T09:04:30,157 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-10T09:04:30,158 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-10T09:04:30,158 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-10T09:04:30,159 adding license file 'COPYING.txt' 2021-07-10T09:04:30,165 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-10T09:04:30,170 copying biom/_filter.c -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,182 copying biom/_filter.pyx -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,185 copying biom/_subsample.c -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,196 copying biom/_subsample.pyx -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,198 copying biom/_transform.c -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,207 copying biom/_transform.pyx -> build/lib.linux-armv7l-3.9/biom 2021-07-10T09:04:30,213 running build_ext 2021-07-10T09:04:30,218 building 'biom._filter' extension 2021-07-10T09:04:30,218 creating build/temp.linux-armv7l-3.9 2021-07-10T09:04:30,219 creating build/temp.linux-armv7l-3.9/biom 2021-07-10T09:04:30,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-10T09:04:30,623 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T09:04:30,624 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T09:04:30,624 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T09:04:30,624 from biom/_filter.c:258: 2021-07-10T09:04:30,624 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T09:04:30,624 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T09:04:30,624 | ^~~~~~~ 2021-07-10T09:04:30,832 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T09:04:30,836 biom/_filter.c:6806:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,836 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,837 | ^ 2021-07-10T09:04:30,837 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,837 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,837 from biom/_filter.c:24: 2021-07-10T09:04:30,837 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:30,837 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:30,837 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,842 biom/_filter.c:6806:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,843 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,843 | ^ 2021-07-10T09:04:30,843 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,843 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,843 from biom/_filter.c:24: 2021-07-10T09:04:30,843 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:30,843 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:30,843 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,848 biom/_filter.c:6806:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,848 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,848 | ^ 2021-07-10T09:04:30,848 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,848 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,848 from biom/_filter.c:24: 2021-07-10T09:04:30,848 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:30,849 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:30,849 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,853 biom/_filter.c:6806:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,853 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,853 | ^ 2021-07-10T09:04:30,854 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,854 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,854 from biom/_filter.c:24: 2021-07-10T09:04:30,854 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:30,854 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:30,854 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,858 biom/_filter.c:6806:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,859 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,859 | ^ 2021-07-10T09:04:30,859 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,859 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,859 from biom/_filter.c:24: 2021-07-10T09:04:30,859 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:30,859 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:30,859 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,864 biom/_filter.c:6806:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,864 6806 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,864 | ^ 2021-07-10T09:04:30,864 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,865 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,865 from biom/_filter.c:24: 2021-07-10T09:04:30,865 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:30,865 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:30,865 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,871 biom/_filter.c:6822:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,871 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,871 | ^ 2021-07-10T09:04:30,871 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,871 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,871 from biom/_filter.c:24: 2021-07-10T09:04:30,872 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:30,872 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:30,872 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,876 biom/_filter.c:6822:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,876 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,876 | ^ 2021-07-10T09:04:30,876 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,877 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,877 from biom/_filter.c:24: 2021-07-10T09:04:30,877 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:30,877 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:30,877 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,881 biom/_filter.c:6822:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,882 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,882 | ^ 2021-07-10T09:04:30,882 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,882 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,882 from biom/_filter.c:24: 2021-07-10T09:04:30,882 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:30,882 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:30,882 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,887 biom/_filter.c:6822:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,887 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,887 | ^ 2021-07-10T09:04:30,887 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,887 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,888 from biom/_filter.c:24: 2021-07-10T09:04:30,888 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:30,888 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:30,888 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,892 biom/_filter.c:6822:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,892 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,893 | ^ 2021-07-10T09:04:30,893 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,893 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,893 from biom/_filter.c:24: 2021-07-10T09:04:30,893 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:30,893 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:30,893 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:30,898 biom/_filter.c:6822:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:30,898 6822 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:30,898 | ^ 2021-07-10T09:04:30,898 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:30,898 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:30,898 from biom/_filter.c:24: 2021-07-10T09:04:30,898 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:30,899 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:30,899 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:31,032 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T09:04:31,032 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T09:04:31,032 from biom/_filter.c:258: 2021-07-10T09:04:31,033 At top level: 2021-07-10T09:04:31,033 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T09:04:31,033 1464 | _import_array(void) 2021-07-10T09:04:31,033 | ^~~~~~~~~~~~~ 2021-07-10T09:04:36,766 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_filter.o -o build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2021-07-10T09:04:36,894 building 'biom._transform' extension 2021-07-10T09:04:36,894 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-3.9/biom/_transform.o 2021-07-10T09:04:37,265 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T09:04:37,266 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T09:04:37,266 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T09:04:37,266 from biom/_transform.c:258: 2021-07-10T09:04:37,266 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T09:04:37,266 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T09:04:37,267 | ^~~~~~~ 2021-07-10T09:04:37,346 biom/_transform.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T09:04:37,347 biom/_transform.c:4050:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,348 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,348 | ^ 2021-07-10T09:04:37,348 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,348 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,348 from biom/_transform.c:24: 2021-07-10T09:04:37,348 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:37,348 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:37,349 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,350 biom/_transform.c:4050:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,350 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,350 | ^ 2021-07-10T09:04:37,351 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,351 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,351 from biom/_transform.c:24: 2021-07-10T09:04:37,351 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:37,351 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:37,351 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,353 biom/_transform.c:4050:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,353 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,353 | ^ 2021-07-10T09:04:37,353 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,353 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,353 from biom/_transform.c:24: 2021-07-10T09:04:37,353 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:37,354 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:37,354 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,355 biom/_transform.c:4050:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,355 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,355 | ^ 2021-07-10T09:04:37,355 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,355 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,356 from biom/_transform.c:24: 2021-07-10T09:04:37,356 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:37,356 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:37,356 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,357 biom/_transform.c:4050:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,357 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,357 | ^ 2021-07-10T09:04:37,358 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,358 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,358 from biom/_transform.c:24: 2021-07-10T09:04:37,358 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:37,358 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:37,358 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,359 biom/_transform.c:4050:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,360 4050 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,360 | ^ 2021-07-10T09:04:37,360 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,360 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,360 from biom/_transform.c:24: 2021-07-10T09:04:37,360 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:37,360 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:37,360 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,362 biom/_transform.c:4066:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,363 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,363 | ^ 2021-07-10T09:04:37,363 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,363 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,363 from biom/_transform.c:24: 2021-07-10T09:04:37,363 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:37,363 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:37,363 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,365 biom/_transform.c:4066:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,365 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,365 | ^ 2021-07-10T09:04:37,365 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,365 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,365 from biom/_transform.c:24: 2021-07-10T09:04:37,365 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:37,366 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:37,366 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,367 biom/_transform.c:4066:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,367 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,367 | ^ 2021-07-10T09:04:37,367 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,367 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,368 from biom/_transform.c:24: 2021-07-10T09:04:37,368 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:37,368 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:37,368 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,369 biom/_transform.c:4066:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,369 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,369 | ^ 2021-07-10T09:04:37,370 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,370 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,370 from biom/_transform.c:24: 2021-07-10T09:04:37,370 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:37,370 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:37,370 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,371 biom/_transform.c:4066:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,372 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,372 | ^ 2021-07-10T09:04:37,372 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,372 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,372 from biom/_transform.c:24: 2021-07-10T09:04:37,372 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:37,372 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:37,372 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,374 biom/_transform.c:4066:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:37,374 4066 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:37,374 | ^ 2021-07-10T09:04:37,374 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:37,374 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:37,374 from biom/_transform.c:24: 2021-07-10T09:04:37,375 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:37,375 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:37,375 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:37,487 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T09:04:37,487 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T09:04:37,488 from biom/_transform.c:258: 2021-07-10T09:04:37,488 At top level: 2021-07-10T09:04:37,488 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T09:04:37,488 1464 | _import_array(void) 2021-07-10T09:04:37,488 | ^~~~~~~~~~~~~ 2021-07-10T09:04:39,226 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_transform.o -o build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2021-07-10T09:04:39,347 building 'biom._subsample' extension 2021-07-10T09:04:39,347 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-3.9/biom/_subsample.o 2021-07-10T09:04:39,728 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T09:04:39,728 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T09:04:39,728 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T09:04:39,728 from biom/_subsample.c:258: 2021-07-10T09:04:39,728 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T09:04:39,729 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T09:04:39,729 | ^~~~~~~ 2021-07-10T09:04:39,822 biom/_subsample.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T09:04:39,824 biom/_subsample.c:4465:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,825 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,825 | ^ 2021-07-10T09:04:39,825 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,825 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,825 from biom/_subsample.c:24: 2021-07-10T09:04:39,825 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:39,826 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:39,826 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,828 biom/_subsample.c:4465:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,828 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,828 | ^ 2021-07-10T09:04:39,828 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,828 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,828 from biom/_subsample.c:24: 2021-07-10T09:04:39,828 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:39,828 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:39,829 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,830 biom/_subsample.c:4465:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,830 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,830 | ^ 2021-07-10T09:04:39,831 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,831 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,831 from biom/_subsample.c:24: 2021-07-10T09:04:39,831 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:39,831 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:39,831 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,833 biom/_subsample.c:4465:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,833 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,833 | ^ 2021-07-10T09:04:39,833 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,833 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,833 from biom/_subsample.c:24: 2021-07-10T09:04:39,833 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:39,834 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:39,834 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,835 biom/_subsample.c:4465:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,835 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,835 | ^ 2021-07-10T09:04:39,836 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,836 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,836 from biom/_subsample.c:24: 2021-07-10T09:04:39,836 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:39,836 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:39,836 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,838 biom/_subsample.c:4465:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,838 4465 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,838 | ^ 2021-07-10T09:04:39,838 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,838 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,838 from biom/_subsample.c:24: 2021-07-10T09:04:39,839 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:39,839 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:39,839 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,841 biom/_subsample.c:4481:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,841 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,841 | ^ 2021-07-10T09:04:39,842 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,842 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,842 from biom/_subsample.c:24: 2021-07-10T09:04:39,842 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:39,842 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:39,842 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,844 biom/_subsample.c:4481:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,844 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,844 | ^ 2021-07-10T09:04:39,844 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,844 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,844 from biom/_subsample.c:24: 2021-07-10T09:04:39,844 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:39,844 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:39,845 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,846 biom/_subsample.c:4481:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,846 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,846 | ^ 2021-07-10T09:04:39,847 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,847 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,847 from biom/_subsample.c:24: 2021-07-10T09:04:39,847 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:39,847 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:39,847 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,849 biom/_subsample.c:4481:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,849 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,849 | ^ 2021-07-10T09:04:39,849 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,849 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,849 from biom/_subsample.c:24: 2021-07-10T09:04:39,849 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:39,850 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:39,850 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,851 biom/_subsample.c:4481:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,851 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,851 | ^ 2021-07-10T09:04:39,852 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,852 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,852 from biom/_subsample.c:24: 2021-07-10T09:04:39,852 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T09:04:39,852 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T09:04:39,852 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,854 biom/_subsample.c:4481:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T09:04:39,854 4481 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T09:04:39,854 | ^ 2021-07-10T09:04:39,854 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T09:04:39,854 from /usr/include/python3.9/Python.h:97, 2021-07-10T09:04:39,854 from biom/_subsample.c:24: 2021-07-10T09:04:39,855 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T09:04:39,855 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T09:04:39,855 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T09:04:39,983 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T09:04:39,983 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T09:04:39,984 from biom/_subsample.c:258: 2021-07-10T09:04:39,984 At top level: 2021-07-10T09:04:39,984 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T09:04:39,984 1464 | _import_array(void) 2021-07-10T09:04:39,984 | ^~~~~~~~~~~~~ 2021-07-10T09:04:43,339 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/biom/_subsample.o -o build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2021-07-10T09:04:43,465 installing to build/bdist.linux-armv7l/wheel 2021-07-10T09:04:43,466 running install 2021-07-10T09:04:43,467 running install_lib 2021-07-10T09:04:43,471 creating build/bdist.linux-armv7l 2021-07-10T09:04:43,471 creating build/bdist.linux-armv7l/wheel 2021-07-10T09:04:43,473 creating build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,474 copying build/lib.linux-armv7l-3.9/biom/_subsample.c -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,484 copying build/lib.linux-armv7l-3.9/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,487 copying build/lib.linux-armv7l-3.9/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,495 copying build/lib.linux-armv7l-3.9/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,497 copying build/lib.linux-armv7l-3.9/biom/_transform.c -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,507 copying build/lib.linux-armv7l-3.9/biom/_filter.pyx -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,510 copying build/lib.linux-armv7l-3.9/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,516 copying build/lib.linux-armv7l-3.9/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,518 copying build/lib.linux-armv7l-3.9/biom/err.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,520 copying build/lib.linux-armv7l-3.9/biom/_filter.c -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,536 copying build/lib.linux-armv7l-3.9/biom/_subsample.pyx -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,539 copying build/lib.linux-armv7l-3.9/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,553 copying build/lib.linux-armv7l-3.9/biom/_transform.pyx -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,555 copying build/lib.linux-armv7l-3.9/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,564 copying build/lib.linux-armv7l-3.9/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2021-07-10T09:04:43,569 creating build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,571 copying build/lib.linux-armv7l-3.9/biom/cli/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,575 copying build/lib.linux-armv7l-3.9/biom/cli/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,578 copying build/lib.linux-armv7l-3.9/biom/cli/__init__.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,582 copying build/lib.linux-armv7l-3.9/biom/cli/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,585 copying build/lib.linux-armv7l-3.9/biom/cli/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,589 copying build/lib.linux-armv7l-3.9/biom/cli/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,592 copying build/lib.linux-armv7l-3.9/biom/cli/table_head.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,595 copying build/lib.linux-armv7l-3.9/biom/cli/uc_processor.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,598 copying build/lib.linux-armv7l-3.9/biom/cli/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,600 copying build/lib.linux-armv7l-3.9/biom/cli/util.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,603 copying build/lib.linux-armv7l-3.9/biom/cli/table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2021-07-10T09:04:43,607 creating build/bdist.linux-armv7l/wheel/tests 2021-07-10T09:04:43,609 copying build/lib.linux-armv7l-3.9/tests/test_err.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T09:04:43,616 copying build/lib.linux-armv7l-3.9/tests/test_util.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T09:04:43,619 copying build/lib.linux-armv7l-3.9/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T09:04:43,621 copying build/lib.linux-armv7l-3.9/tests/test_parse.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T09:04:43,627 creating build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,628 copying build/lib.linux-armv7l-3.9/tests/test_cli/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,801 copying build/lib.linux-armv7l-3.9/tests/test_cli/test_subset_table.py -> build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,805 copying build/lib.linux-armv7l-3.9/tests/test_cli/test_uc_processor.py -> build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,809 copying build/lib.linux-armv7l-3.9/tests/test_cli/test_summarize_table.py -> build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,812 copying build/lib.linux-armv7l-3.9/tests/test_cli/test_add_metadata.py -> build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,816 copying build/lib.linux-armv7l-3.9/tests/test_cli/test_table_converter.py -> build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,819 copying build/lib.linux-armv7l-3.9/tests/test_cli/test_table_normalizer.py -> build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,822 copying build/lib.linux-armv7l-3.9/tests/test_cli/test_validate_table.py -> build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,825 copying build/lib.linux-armv7l-3.9/tests/test_cli/test_show_install_info.py -> build/bdist.linux-armv7l/wheel/tests/test_cli 2021-07-10T09:04:43,827 copying build/lib.linux-armv7l-3.9/tests/test_table.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T09:04:43,834 running install_egg_info 2021-07-10T09:04:43,844 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1.5-py3.9.egg-info 2021-07-10T09:04:43,859 running install_scripts 2021-07-10T09:04:43,973 adding license file "COPYING.txt" (matched pattern "COPYING*") 2021-07-10T09:04:43,977 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.5.dist-info/WHEEL 2021-07-10T09:04:43,980 creating '/tmp/pip-wheel-ge5c_sko/biom_format-2.1.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T09:04:43,982 adding 'biom/__init__.py' 2021-07-10T09:04:44,017 adding 'biom/_filter.c' 2021-07-10T09:04:44,101 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T09:04:44,106 adding 'biom/_filter.pyx' 2021-07-10T09:04:44,129 adding 'biom/_subsample.c' 2021-07-10T09:04:44,176 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T09:04:44,180 adding 'biom/_subsample.pyx' 2021-07-10T09:04:44,201 adding 'biom/_transform.c' 2021-07-10T09:04:44,230 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T09:04:44,233 adding 'biom/_transform.pyx' 2021-07-10T09:04:44,235 adding 'biom/err.py' 2021-07-10T09:04:44,236 adding 'biom/exception.py' 2021-07-10T09:04:44,239 adding 'biom/parse.py' 2021-07-10T09:04:44,256 adding 'biom/table.py' 2021-07-10T09:04:44,260 adding 'biom/util.py' 2021-07-10T09:04:44,262 adding 'biom/cli/__init__.py' 2021-07-10T09:04:44,263 adding 'biom/cli/installation_informer.py' 2021-07-10T09:04:44,264 adding 'biom/cli/metadata_adder.py' 2021-07-10T09:04:44,266 adding 'biom/cli/table_converter.py' 2021-07-10T09:04:44,267 adding 'biom/cli/table_head.py' 2021-07-10T09:04:44,269 adding 'biom/cli/table_normalizer.py' 2021-07-10T09:04:44,270 adding 'biom/cli/table_subsetter.py' 2021-07-10T09:04:44,271 adding 'biom/cli/table_summarizer.py' 2021-07-10T09:04:44,274 adding 'biom/cli/table_validator.py' 2021-07-10T09:04:44,275 adding 'biom/cli/uc_processor.py' 2021-07-10T09:04:44,277 adding 'biom/cli/util.py' 2021-07-10T09:04:44,280 adding 'tests/__init__.py' 2021-07-10T09:04:44,281 adding 'tests/test_err.py' 2021-07-10T09:04:44,286 adding 'tests/test_parse.py' 2021-07-10T09:04:44,298 adding 'tests/test_table.py' 2021-07-10T09:04:44,302 adding 'tests/test_util.py' 2021-07-10T09:04:44,304 adding 'tests/test_cli/__init__.py' 2021-07-10T09:04:44,305 adding 'tests/test_cli/test_add_metadata.py' 2021-07-10T09:04:44,307 adding 'tests/test_cli/test_show_install_info.py' 2021-07-10T09:04:44,308 adding 'tests/test_cli/test_subset_table.py' 2021-07-10T09:04:44,309 adding 'tests/test_cli/test_summarize_table.py' 2021-07-10T09:04:44,311 adding 'tests/test_cli/test_table_converter.py' 2021-07-10T09:04:44,313 adding 'tests/test_cli/test_table_normalizer.py' 2021-07-10T09:04:44,314 adding 'tests/test_cli/test_uc_processor.py' 2021-07-10T09:04:44,316 adding 'tests/test_cli/test_validate_table.py' 2021-07-10T09:04:44,318 adding 'biom_format-2.1.5.dist-info/COPYING.txt' 2021-07-10T09:04:44,319 adding 'biom_format-2.1.5.dist-info/METADATA' 2021-07-10T09:04:44,320 adding 'biom_format-2.1.5.dist-info/WHEEL' 2021-07-10T09:04:44,321 adding 'biom_format-2.1.5.dist-info/entry_points.txt' 2021-07-10T09:04:44,322 adding 'biom_format-2.1.5.dist-info/top_level.txt' 2021-07-10T09:04:44,323 adding 'biom_format-2.1.5.dist-info/RECORD' 2021-07-10T09:04:44,334 removing build/bdist.linux-armv7l/wheel 2021-07-10T09:04:44,471 Building wheel for biom-format (setup.py): finished with status 'done' 2021-07-10T09:04:44,480 Created wheel for biom-format: filename=biom_format-2.1.5-cp39-cp39-linux_armv7l.whl size=553103 sha256=b76e64877acf4dafbd8e69682f179074c84f99ed8eac23ce895276a806d23a70 2021-07-10T09:04:44,481 Stored in directory: /tmp/pip-ephem-wheel-cache-k1bxints/wheels/b2/f6/75/9f3d6ce53379ed863dabe816cfa4179d3c4f60f957d0a2de80 2021-07-10T09:04:44,492 Successfully built biom-format 2021-07-10T09:04:44,514 Removed build tracker: '/tmp/pip-req-tracker-0qgt_imf'