2021-07-10T10:17:26,934 Created temporary directory: /tmp/pip-ephem-wheel-cache-mijkjq66 2021-07-10T10:17:26,937 Created temporary directory: /tmp/pip-req-tracker-7j6r33sr 2021-07-10T10:17:26,937 Initialized build tracking at /tmp/pip-req-tracker-7j6r33sr 2021-07-10T10:17:26,938 Created build tracker: /tmp/pip-req-tracker-7j6r33sr 2021-07-10T10:17:26,938 Entered build tracker: /tmp/pip-req-tracker-7j6r33sr 2021-07-10T10:17:26,939 Created temporary directory: /tmp/pip-wheel-cuy9aa80 2021-07-10T10:17:26,967 1 location(s) to search for versions of pybigwig: 2021-07-10T10:17:26,967 * https://pypi.org/simple/pybigwig/ 2021-07-10T10:17:26,967 Fetching project page and analyzing links: https://pypi.org/simple/pybigwig/ 2021-07-10T10:17:26,968 Getting page https://pypi.org/simple/pybigwig/ 2021-07-10T10:17:26,969 Found index url https://pypi.org/simple 2021-07-10T10:17:27,161 Found link 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https://files.pythonhosted.org/packages/c9/1a/656e854a640b19e926becbb977a9eae2b7603d42c784a299f43f53444d75/pyBigWig-0.2.0.tar.gz#sha256=80f2de84cbc19829f57e2dfd907598e7775352c11b45a5cb9e38e4cf3895d064 (from https://pypi.org/simple/pybigwig/), version: 0.2.0 2021-07-10T10:17:27,162 Found link https://files.pythonhosted.org/packages/c7/93/b083cab6dcf79e5fc667eba2081ec2191cb0dd7801508eb377113479ce64/pyBigWig-0.2.1.tar.gz#sha256=80b434da547c87c54e4d8221bc2a26d490138dcb1148d50ec92129ca38b9ebcd (from https://pypi.org/simple/pybigwig/), version: 0.2.1 2021-07-10T10:17:27,163 Found link https://files.pythonhosted.org/packages/66/96/3e1db5ae2133d09ea5635b1b42757f7a0f9c648b1548eb858748a4b4ed62/pyBigWig-0.2.1b.tar.gz#sha256=8927da11cc0f46499e828070ce7812a23b755cb133d6911e262752a440c61563 (from https://pypi.org/simple/pybigwig/), version: 0.2.1b 2021-07-10T10:17:27,163 Found link 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https://files.pythonhosted.org/packages/48/f5/972aad9b52ed8b4d3e651d5b766a9aa29c62e7052919970e1b61b40fa9d7/pyBigWig-0.3.9.tar.gz#sha256=34306213414a8d8974c4ffaac153b3d0a67ce0183514a93aede6c3d33b6f7947 (from https://pypi.org/simple/pybigwig/), version: 0.3.9 2021-07-10T10:17:27,167 Found link https://files.pythonhosted.org/packages/9b/a2/322da414cdff7d3da7084388d2e65c6136722b744290619689d70e625058/pyBigWig-0.3.10.tar.gz#sha256=a409d67a744e099260c0d17c7b98a4250f41de0daa9ef32bf7512b0cd35f0039 (from https://pypi.org/simple/pybigwig/), version: 0.3.10 2021-07-10T10:17:27,168 Found link https://files.pythonhosted.org/packages/7b/b7/e135efa69cd146d22920c196e4575d2ff5a0b19c8f3a29634f5b4c639764/pyBigWig-0.3.11.tar.gz#sha256=408ebb40f01c72c77adde4d785a18dabc9abbe9020024e4296b8f6a51a662ae7 (from https://pypi.org/simple/pybigwig/), version: 0.3.11 2021-07-10T10:17:27,168 Found link https://files.pythonhosted.org/packages/d5/0d/8e2a1edb9524790c6a4d0b70bc800a8e4afee1bc7bdd048c54b8d9cf1c32/pyBigWig-0.3.12.tar.gz#sha256=e01991790ece496bf6d3f00778dcfb136dd9ca0fd28acc1b3fb43051ad9b8403 (from https://pypi.org/simple/pybigwig/), version: 0.3.12 2021-07-10T10:17:27,168 Found link https://files.pythonhosted.org/packages/5c/9c/2e01d04b6fd31c1e09537c8f51410123c087da4974bdb0fcdb7ec25dab62/pyBigWig-0.3.13.tar.gz#sha256=c65cb9ccd78a4ede00c3209579173e4f7e67598daf6dc079676a0e8982163f5b (from https://pypi.org/simple/pybigwig/), version: 0.3.13 2021-07-10T10:17:27,168 Found link https://files.pythonhosted.org/packages/b2/5f/31086a89f067e0f0ad3b5b039e1d99ed7f4e5e7bc0fe156aef724a45ed06/pyBigWig-0.3.14.tar.gz#sha256=28bed8b4491df8704d54247d5d6e2d77a9b6fe4be6a77b8246e0ee3fb531c206 (from https://pypi.org/simple/pybigwig/), version: 0.3.14 2021-07-10T10:17:27,169 Found link https://files.pythonhosted.org/packages/99/c0/c53056f4496b2bacfaa014f0f3fc74934827cd4ce933f94fe870eaf65181/pyBigWig-0.3.15.tar.gz#sha256=7e2c85b9ca826007a6c56907343b31fb86058a3b8d0bc9138c9de0a759d02e82 (from https://pypi.org/simple/pybigwig/), version: 0.3.15 2021-07-10T10:17:27,169 Found link https://files.pythonhosted.org/packages/67/c8/741cca63e6a8688ef22a605bb06cc849fc57df419027013f2d1181f184f8/pyBigWig-0.3.16.tar.gz#sha256=1ec93c67089147cc918c7dbd69ff3cfbe0648e5b7b2e809c51f70daf668215d1 (from https://pypi.org/simple/pybigwig/), version: 0.3.16 2021-07-10T10:17:27,169 Found link https://files.pythonhosted.org/packages/b0/e2/cf945d541a10bb9c675f986d5bf0b0268544721054d17cc6260cfcfb3685/pyBigWig-0.3.17.tar.gz#sha256=41f64f802689ed72e15296a21a4b7abd3904780b2e4f8146fd29098fc836fd94 (from https://pypi.org/simple/pybigwig/), version: 0.3.17 2021-07-10T10:17:27,170 Found link https://files.pythonhosted.org/packages/23/29/b51c3580427dd66dfecd63ffbe2dfa37175d3c898b289a3f27def1be34c0/pyBigWig-0.3.18.tar.gz#sha256=4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc (from https://pypi.org/simple/pybigwig/), version: 0.3.18 2021-07-10T10:17:27,170 Skipping link: not a file: https://pypi.org/simple/pybigwig/ 2021-07-10T10:17:27,192 Given no hashes to check 1 links for project 'pybigwig': discarding no candidates 2021-07-10T10:17:27,211 Collecting pybigwig==0.1.9 2021-07-10T10:17:27,213 Created temporary directory: /tmp/pip-unpack-372uoxpp 2021-07-10T10:17:27,403 Downloading pyBigWig-0.1.9.tar.gz (29 kB) 2021-07-10T10:17:27,482 Added pybigwig==0.1.9 from https://files.pythonhosted.org/packages/f5/9f/322e726df7cd381467361b2d0aa364a3d9cb7253bba91a9ea09f42515c7c/pyBigWig-0.1.9.tar.gz#sha256=c3cdc622f148209f33e6c1f74b7c265ede53525ee751f1a7c26915ee3f020124 to build tracker '/tmp/pip-req-tracker-7j6r33sr' 2021-07-10T10:17:27,483 Running setup.py (path:/tmp/pip-wheel-cuy9aa80/pybigwig_d56d3d0ca2d54c4292f80005c38d30cd/setup.py) egg_info for package pybigwig 2021-07-10T10:17:27,483 Created temporary directory: /tmp/pip-pip-egg-info-zf_vfy1s 2021-07-10T10:17:27,484 Running command python setup.py egg_info 2021-07-10T10:17:28,320 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-10T10:17:28,321 warnings.warn( 2021-07-10T10:17:28,457 running egg_info 2021-07-10T10:17:28,460 creating /tmp/pip-pip-egg-info-zf_vfy1s/pyBigWig.egg-info 2021-07-10T10:17:28,461 writing /tmp/pip-pip-egg-info-zf_vfy1s/pyBigWig.egg-info/PKG-INFO 2021-07-10T10:17:28,463 writing dependency_links to /tmp/pip-pip-egg-info-zf_vfy1s/pyBigWig.egg-info/dependency_links.txt 2021-07-10T10:17:28,465 writing top-level names to /tmp/pip-pip-egg-info-zf_vfy1s/pyBigWig.egg-info/top_level.txt 2021-07-10T10:17:28,467 writing manifest file '/tmp/pip-pip-egg-info-zf_vfy1s/pyBigWig.egg-info/SOURCES.txt' 2021-07-10T10:17:28,810 reading manifest file '/tmp/pip-pip-egg-info-zf_vfy1s/pyBigWig.egg-info/SOURCES.txt' 2021-07-10T10:17:28,812 reading manifest template 'MANIFEST.in' 2021-07-10T10:17:28,816 warning: no previously-included files found matching '.gitignore' 2021-07-10T10:17:28,817 warning: no previously-included files found matching '.gitmodules' 2021-07-10T10:17:28,817 warning: no previously-included files found matching '.travis.yml' 2021-07-10T10:17:28,818 warning: no previously-included files found matching 'pyBigWig.egg*' 2021-07-10T10:17:28,818 adding license file 'LICENSE.txt' 2021-07-10T10:17:28,821 writing manifest file '/tmp/pip-pip-egg-info-zf_vfy1s/pyBigWig.egg-info/SOURCES.txt' 2021-07-10T10:17:28,908 Source in /tmp/pip-wheel-cuy9aa80/pybigwig_d56d3d0ca2d54c4292f80005c38d30cd has version 0.1.9, which satisfies requirement pybigwig==0.1.9 from https://files.pythonhosted.org/packages/f5/9f/322e726df7cd381467361b2d0aa364a3d9cb7253bba91a9ea09f42515c7c/pyBigWig-0.1.9.tar.gz#sha256=c3cdc622f148209f33e6c1f74b7c265ede53525ee751f1a7c26915ee3f020124 2021-07-10T10:17:28,909 Removed pybigwig==0.1.9 from https://files.pythonhosted.org/packages/f5/9f/322e726df7cd381467361b2d0aa364a3d9cb7253bba91a9ea09f42515c7c/pyBigWig-0.1.9.tar.gz#sha256=c3cdc622f148209f33e6c1f74b7c265ede53525ee751f1a7c26915ee3f020124 from build tracker '/tmp/pip-req-tracker-7j6r33sr' 2021-07-10T10:17:28,914 Created temporary directory: /tmp/pip-unpack-sktwibv_ 2021-07-10T10:17:28,914 Building wheels for collected packages: pybigwig 2021-07-10T10:17:28,918 Created temporary directory: /tmp/pip-wheel-2uvt5320 2021-07-10T10:17:28,919 Building wheel for pybigwig (setup.py): started 2021-07-10T10:17:28,919 Destination directory: /tmp/pip-wheel-2uvt5320 2021-07-10T10:17:28,920 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cuy9aa80/pybigwig_d56d3d0ca2d54c4292f80005c38d30cd/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cuy9aa80/pybigwig_d56d3d0ca2d54c4292f80005c38d30cd/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2uvt5320 2021-07-10T10:17:29,737 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-10T10:17:29,737 warnings.warn( 2021-07-10T10:17:29,891 running bdist_wheel 2021-07-10T10:17:30,053 running build 2021-07-10T10:17:30,054 running build_py 2021-07-10T10:17:30,193 creating build 2021-07-10T10:17:30,193 creating build/lib.linux-armv7l-3.9 2021-07-10T10:17:30,194 creating build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-10T10:17:30,195 copying pyBigWigTest/__init__.py -> build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-10T10:17:30,196 copying pyBigWigTest/test.py -> build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-10T10:17:30,197 running egg_info 2021-07-10T10:17:30,210 writing pyBigWig.egg-info/PKG-INFO 2021-07-10T10:17:30,212 writing dependency_links to pyBigWig.egg-info/dependency_links.txt 2021-07-10T10:17:30,214 writing top-level names to pyBigWig.egg-info/top_level.txt 2021-07-10T10:17:30,247 reading manifest file 'pyBigWig.egg-info/SOURCES.txt' 2021-07-10T10:17:30,250 reading manifest template 'MANIFEST.in' 2021-07-10T10:17:30,254 warning: no previously-included files found matching '.gitignore' 2021-07-10T10:17:30,254 warning: no previously-included files found matching '.gitmodules' 2021-07-10T10:17:30,254 warning: no previously-included files found matching '.travis.yml' 2021-07-10T10:17:30,255 warning: no previously-included files found matching 'pyBigWig.egg*' 2021-07-10T10:17:30,255 adding license file 'LICENSE.txt' 2021-07-10T10:17:30,258 writing manifest file 'pyBigWig.egg-info/SOURCES.txt' 2021-07-10T10:17:30,261 copying pyBigWigTest/__init__.pyc -> build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-10T10:17:30,264 copying pyBigWigTest/test.bw -> build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-10T10:17:30,271 copying pyBigWigTest/test.pyc -> build/lib.linux-armv7l-3.9/pyBigWigTest 2021-07-10T10:17:30,274 running build_ext 2021-07-10T10:17:30,279 building 'pyBigWig' extension 2021-07-10T10:17:30,280 creating build/temp.linux-armv7l-3.9 2021-07-10T10:17:30,280 creating build/temp.linux-armv7l-3.9/libBigWig 2021-07-10T10:17:30,281 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IlibBigWig -I/usr/include/python3.9 -c libBigWig/bwRead.c -o build/temp.linux-armv7l-3.9/libBigWig/bwRead.o 2021-07-10T10:17:30,849 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IlibBigWig -I/usr/include/python3.9 -c libBigWig/bwStats.c -o build/temp.linux-armv7l-3.9/libBigWig/bwStats.o 2021-07-10T10:17:31,066 libBigWig/bwStats.c: In function ‘getVals’: 2021-07-10T10:17:31,067 libBigWig/bwStats.c:97:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uLongf’ {aka ‘long unsigned int’} [-Wsign-compare] 2021-07-10T10:17:31,067 97 | while((void*)p-buf < sz) { 2021-07-10T10:17:31,067 | ^ 2021-07-10T10:17:31,075 libBigWig/bwStats.c: In function ‘bwStats’: 2021-07-10T10:17:31,075 libBigWig/bwStats.c:478:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:31,075 478 | if(tid == -1) return NULL; 2021-07-10T10:17:31,075 | ^~ 2021-07-10T10:17:31,660 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IlibBigWig -I/usr/include/python3.9 -c libBigWig/bwValues.c -o build/temp.linux-armv7l-3.9/libBigWig/bwValues.o 2021-07-10T10:17:31,855 libBigWig/bwValues.c: In function ‘bwGetOverlappingBlocks’: 2021-07-10T10:17:31,856 libBigWig/bwValues.c:287:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:31,856 287 | if(tid == -1) { 2021-07-10T10:17:31,856 | ^~ 2021-07-10T10:17:31,861 libBigWig/bwValues.c: In function ‘bwGetOverlappingIntervals’: 2021-07-10T10:17:31,862 libBigWig/bwValues.c:443:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:31,862 443 | if(tid == -1) return NULL; 2021-07-10T10:17:31,862 | ^~ 2021-07-10T10:17:32,540 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IlibBigWig -I/usr/include/python3.9 -c libBigWig/io.c -o build/temp.linux-armv7l-3.9/libBigWig/io.o 2021-07-10T10:17:32,726 libBigWig/io.c: In function ‘urlFetchData’: 2021-07-10T10:17:32,726 libBigWig/io.c:25:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:32,726 25 | if(URL->filePos != -1) URL->filePos += URL->bufLen; 2021-07-10T10:17:32,726 | ^~ 2021-07-10T10:17:32,727 libBigWig/io.c: In function ‘urlSeek’: 2021-07-10T10:17:32,728 libBigWig/io.c:111:30: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2021-07-10T10:17:32,728 111 | sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1); 2021-07-10T10:17:32,728 | ~~^ ~~~ 2021-07-10T10:17:32,728 | | | 2021-07-10T10:17:32,728 | | size_t {aka unsigned int} 2021-07-10T10:17:32,729 | long unsigned int 2021-07-10T10:17:32,729 | %u 2021-07-10T10:17:32,729 libBigWig/io.c:111:34: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 4 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2021-07-10T10:17:32,729 111 | sprintf(range,"%lu-%lu", pos, pos+URL->bufSize-1); 2021-07-10T10:17:32,729 | ~~^ ~~~~~~~~~~~~~~~~~~ 2021-07-10T10:17:32,729 | | | 2021-07-10T10:17:32,729 | long unsigned int size_t {aka unsigned int} 2021-07-10T10:17:32,729 | %u 2021-07-10T10:17:32,745 libBigWig/io.c: In function ‘urlOpen’: 2021-07-10T10:17:32,745 libBigWig/io.c:178:29: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 3 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2021-07-10T10:17:32,746 178 | sprintf(range, "0-%lu", URL->bufSize-1); 2021-07-10T10:17:32,746 | ~~^ ~~~~~~~~~~~~~~ 2021-07-10T10:17:32,746 | | | 2021-07-10T10:17:32,746 | | size_t {aka unsigned int} 2021-07-10T10:17:32,746 | long unsigned int 2021-07-10T10:17:32,746 | %u 2021-07-10T10:17:33,043 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IlibBigWig -I/usr/include/python3.9 -c pyBigWig.c -o build/temp.linux-armv7l-3.9/pyBigWig.o 2021-07-10T10:17:33,469 pyBigWig.c: In function ‘pyBwGetStats’: 2021-07-10T10:17:33,469 pyBigWig.c:149:13: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T10:17:33,469 149 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2021-07-10T10:17:33,469 | ^~ 2021-07-10T10:17:33,469 pyBigWig.c:149:26: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:33,469 149 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2021-07-10T10:17:33,470 | ^~ 2021-07-10T10:17:33,470 pyBigWig.c:150:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:33,470 150 | if(tid == -1 || startl > end || endl > end) { 2021-07-10T10:17:33,470 | ^~ 2021-07-10T10:17:33,470 pyBigWig.c: In function ‘pyBwGetValues’: 2021-07-10T10:17:33,470 pyBigWig.c:198:13: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T10:17:33,471 198 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2021-07-10T10:17:33,471 | ^~ 2021-07-10T10:17:33,471 pyBigWig.c:198:26: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:33,471 198 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2021-07-10T10:17:33,471 | ^~ 2021-07-10T10:17:33,471 pyBigWig.c:199:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:33,472 199 | if(tid == -1 || startl > end || endl > end) { 2021-07-10T10:17:33,472 | ^~ 2021-07-10T10:17:33,472 pyBigWig.c:217:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T10:17:33,472 217 | for(i=0; il; i++) PyList_SetItem(ret, i, PyFloat_FromDouble(o->value[i])); 2021-07-10T10:17:33,472 | ^ 2021-07-10T10:17:33,472 pyBigWig.c: In function ‘pyBwGetIntervals’: 2021-07-10T10:17:33,472 pyBigWig.c:240:13: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T10:17:33,473 240 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2021-07-10T10:17:33,473 | ^~ 2021-07-10T10:17:33,473 pyBigWig.c:240:26: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:33,473 240 | if(endl == -1 && tid != -1) endl = bw->cl->len[tid]; 2021-07-10T10:17:33,473 | ^~ 2021-07-10T10:17:33,473 pyBigWig.c:241:12: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-10T10:17:33,473 241 | if(tid == -1 || startl > end || endl > end) { 2021-07-10T10:17:33,473 | ^~ 2021-07-10T10:17:33,877 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/libBigWig/bwRead.o build/temp.linux-armv7l-3.9/libBigWig/bwStats.o build/temp.linux-armv7l-3.9/libBigWig/bwValues.o build/temp.linux-armv7l-3.9/libBigWig/io.o build/temp.linux-armv7l-3.9/pyBigWig.o -lm -lz -lcurl -lpython3.9m -o build/lib.linux-armv7l-3.9/pyBigWig.cpython-39-arm-linux-gnueabihf.so 2021-07-10T10:17:33,930 /usr/bin/ld: cannot find -lpython3.9m 2021-07-10T10:17:33,949 collect2: error: ld returned 1 exit status 2021-07-10T10:17:33,951 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T10:17:34,041 Building wheel for pybigwig (setup.py): finished with status 'error' 2021-07-10T10:17:34,042 ERROR: Failed building wheel for pybigwig 2021-07-10T10:17:34,042 Running setup.py clean for pybigwig 2021-07-10T10:17:34,043 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cuy9aa80/pybigwig_d56d3d0ca2d54c4292f80005c38d30cd/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cuy9aa80/pybigwig_d56d3d0ca2d54c4292f80005c38d30cd/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T10:17:34,881 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-10T10:17:34,882 warnings.warn( 2021-07-10T10:17:35,010 running clean 2021-07-10T10:17:35,013 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T10:17:35,017 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T10:17:35,020 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T10:17:35,020 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T10:17:35,021 removing 'build' 2021-07-10T10:17:35,084 Failed to build pybigwig 2021-07-10T10:17:35,084 ERROR: Failed to build one or more wheels 2021-07-10T10:17:35,086 Exception information: 2021-07-10T10:17:35,086 Traceback (most recent call last): 2021-07-10T10:17:35,086 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T10:17:35,086 status = self.run(options, args) 2021-07-10T10:17:35,086 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T10:17:35,086 return func(self, options, args) 2021-07-10T10:17:35,086 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T10:17:35,086 raise CommandError( 2021-07-10T10:17:35,086 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T10:17:35,088 Removed build tracker: '/tmp/pip-req-tracker-7j6r33sr'