2021-07-10T11:10:18,362 Created temporary directory: /tmp/pip-ephem-wheel-cache-znokxes_ 2021-07-10T11:10:18,365 Created temporary directory: /tmp/pip-req-tracker-nmz33tj0 2021-07-10T11:10:18,365 Initialized build tracking at /tmp/pip-req-tracker-nmz33tj0 2021-07-10T11:10:18,366 Created build tracker: /tmp/pip-req-tracker-nmz33tj0 2021-07-10T11:10:18,366 Entered build tracker: /tmp/pip-req-tracker-nmz33tj0 2021-07-10T11:10:18,366 Created temporary directory: /tmp/pip-wheel-mlb45_4w 2021-07-10T11:10:18,395 1 location(s) to search for versions of whatshap: 2021-07-10T11:10:18,395 * https://pypi.org/simple/whatshap/ 2021-07-10T11:10:18,396 Fetching project page and analyzing links: https://pypi.org/simple/whatshap/ 2021-07-10T11:10:18,397 Getting page https://pypi.org/simple/whatshap/ 2021-07-10T11:10:18,398 Found index url https://pypi.org/simple 2021-07-10T11:10:18,589 Found link https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz#sha256=beaadbc79e4d463b5e441b8e9a13b5345c07db3d91fb093cee1bfebfebae4442 (from https://pypi.org/simple/whatshap/), version: 0.9 2021-07-10T11:10:18,589 Found link https://files.pythonhosted.org/packages/f0/4b/f2b882803ac66b969414d8427ee8b4ca2c29b17cfead0fd85f349dc66983/whatshap-0.10.tar.gz#sha256=864d4ecfc33eac7265452f5a2f468a830779afc53e723119ecac5ecf73255acc (from https://pypi.org/simple/whatshap/), version: 0.10 2021-07-10T11:10:18,590 Found link https://files.pythonhosted.org/packages/fc/dc/30559c28fb54985773fb242f5768fc206e054e44e45962a32cf4fd29a794/whatshap-0.11.tar.gz#sha256=d0367a4dd0adf288d30a9a87b565e4f141745bec3ea825cb85ac3409a593bde9 (from https://pypi.org/simple/whatshap/), version: 0.11 2021-07-10T11:10:18,590 Found link https://files.pythonhosted.org/packages/01/84/31a5ea338647d0256a4a5c57e98d7a563f387e6a47f1e26299b89e3f2da1/whatshap-0.12.tar.gz#sha256=c65060155dc901e4d4bd48077706660e5b214540d4dc20575a8b2146fb6a11f9 (from https://pypi.org/simple/whatshap/), version: 0.12 2021-07-10T11:10:18,590 Found link https://files.pythonhosted.org/packages/e2/f3/c71cb4bc3ba3b1234ee0c5fe729c60440164e07437695ca09c61750e0e11/whatshap-0.13.tar.gz#sha256=529646db74b2cac9f12ebd530bd7bb40cb073c367894bf66c5994c1d7f32b56a (from https://pypi.org/simple/whatshap/), version: 0.13 2021-07-10T11:10:18,591 Found link https://files.pythonhosted.org/packages/cd/d3/a63285d15b0da196a259197e46d9f61a852d1b3c94800f4a82ca4e31e307/whatshap-0.14.tar.gz#sha256=dd6076e67c5a4ce75d2510b3dbdd3c1e524124be62655f06c82f7d9fce4c5643 (from https://pypi.org/simple/whatshap/), version: 0.14 2021-07-10T11:10:18,591 Found link https://files.pythonhosted.org/packages/ec/d4/d6c19b716926895ee3def919ab23194212172ed5cf89ccb91c2949fb258d/whatshap-0.14.1.tar.gz#sha256=7b5781f1138b1830c4627451d1d5c77e7f2a3c5403510d9ab2a63f545911415b (from https://pypi.org/simple/whatshap/), version: 0.14.1 2021-07-10T11:10:18,591 Found link https://files.pythonhosted.org/packages/ca/13/6454e5e8f6c858a203378b3e22f13518f092ba85aa6d7a9a9796d22c28e0/whatshap-0.15.tar.gz#sha256=2dc9d89d71cf99e10c71b6138edd456bfcf0d7355794bc3491078654df85bc38 (from https://pypi.org/simple/whatshap/), version: 0.15 2021-07-10T11:10:18,592 Found link https://files.pythonhosted.org/packages/3d/cb/55730a8713ecba10f6d987dbd935ba31ded92f9af1ddd250896f3c1cfc3b/whatshap-0.16.tar.gz#sha256=1df54d8705fb0451cc0a640918842481087f7b741778dfb4100cc1f4f60f48fe (from https://pypi.org/simple/whatshap/), version: 0.16 2021-07-10T11:10:18,592 Found link https://files.pythonhosted.org/packages/79/11/79da12b8c23f43b00fab8a6206f75cc1cc8c1902ff30eca53c17abe2f633/whatshap-0.17.tar.gz#sha256=8ad1c66789fe5fe957b3695902dae3c3fd4e67f79b9e349b92b532e9ff618933 (from https://pypi.org/simple/whatshap/), version: 0.17 2021-07-10T11:10:18,609 Skipping link: none of the wheel's tags (cp34-cp34m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/97/19/5758de9357d2639e81f774dffd5227278df2df7f56e81f080098f00c8d5a/whatshap-0.18-cp34-cp34m-manylinux1_x86_64.whl#sha256=4a09adc24c6db3bd525667ac2559181dc94ee203a64f488dfce1ac38cbf44ba5 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-07-10T11:10:18,610 Skipping link: none of the wheel's tags (cp35-cp35m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d0/72/94dc654f66164a351a1a9540e28b4bdf34a81046fbf26b5955725bea2f64/whatshap-0.18-cp35-cp35m-manylinux1_x86_64.whl#sha256=1c99980629655e58a34496b0e1b1c9123dddd0797a13cf681dcf83f92a6f33e0 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-07-10T11:10:18,610 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/0a/50/c9c89e7f3a59251a91e618165ccc2586b626643a4c59dfd8d1b32f9b6bbb/whatshap-0.18-cp36-cp36m-manylinux1_x86_64.whl#sha256=fdadadbed86cc7a7abd8f9ef3d55fe280eda957473db03dc30ad06ace6b877bd (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-07-10T11:10:18,611 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/32/77/e9e6f3e15a89ea87b0a3ed50e99af2a375a897707eb8b4c81209af918ff0/whatshap-0.18-cp37-cp37m-manylinux1_x86_64.whl#sha256=2e189cb51c2527444dada90f8fd2355ddfe8d9d35aca386330e63bc46c2d2699 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4) 2021-07-10T11:10:18,611 Found link https://files.pythonhosted.org/packages/f0/e4/4392c2f1320ea8d4b79a76e3a6dcb9bd7bf6ed70e11499c9acf2db2d42ef/whatshap-0.18.tar.gz#sha256=c566130eca57fe9e34f5193390856dc44171c397f9708c49fcbf204e575b6695 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.4), version: 0.18 2021-07-10T11:10:18,612 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/0f/f5/78e5fa758144941f08b1de923889c7123e4d20368837904fc004592b6ec9/whatshap-1.0-cp36-cp36m-manylinux2010_x86_64.whl#sha256=ff945c6a0406f328771dbbc86970bd48a0327833ca8e96ad836a55ab32ae99d4 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-10T11:10:18,612 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/42/cb/53a1a2a160846a225c6184da26e8f6d6577f5af378e3a90aab728bb5b504/whatshap-1.0-cp37-cp37m-manylinux2010_x86_64.whl#sha256=78bacd81697878129a6ff39f9474792f85b95e6fde7bfa30371b87a24d5e9d3a (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-10T11:10:18,613 Skipping link: none of the wheel's tags (cp38-cp38-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/63/91/5aaa2ec02a362e784d7be43f43b1e243fa9153ef5d9ab3ada91759638444/whatshap-1.0-cp38-cp38-manylinux2010_x86_64.whl#sha256=62318377e996d1f3040cbfdb3462a3140dbdfd4113584c9000b530ca70bbf223 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-10T11:10:18,613 Found link https://files.pythonhosted.org/packages/c0/c8/98036e04fb95249128d6b49ca61691e1d8eea484dd94611f90efb5857174/whatshap-1.0.tar.gz#sha256=fcf0495793998da94054bdc4c6d6f3f6b145a7befa07ac96275e5e2272979aa2 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.0 2021-07-10T11:10:18,614 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/8a/fb/dfaa97a9ec1fe333dcd730498376d33bc21de017760b633d8dd84f9cd9f6/whatshap-1.1-cp36-cp36m-manylinux2010_x86_64.whl#sha256=93af99ab08fac60bb3e46cde68978619f095e1b47490f59e4085f338ad715b46 (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-10T11:10:18,614 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/37/4e/a06bd339ea7179e750d49fec27caba7a6b364f608b5126105770333a6dfa/whatshap-1.1-cp37-cp37m-manylinux2010_x86_64.whl#sha256=94c04469069a87636c8aaf88d9f3e33022864de633327fedfdedd8da2bc4c6aa (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-10T11:10:18,615 Skipping link: none of the wheel's tags (cp38-cp38-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/2b/61/3000e39650a20faf011d74e41c3a6e3eea11195b1dad6cc8398665539363/whatshap-1.1-cp38-cp38-manylinux2010_x86_64.whl#sha256=7821711be901f898437a6be4993a15e77edbb59683ffa76d3dc9bc1bf855769a (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-10T11:10:18,615 Skipping link: none of the wheel's tags (cp39-cp39-manylinux2010_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/37/1a/f9708037de73715099098762c13e8e0681129041d41fb0ab508004ed2aa7/whatshap-1.1-cp39-cp39-manylinux2010_x86_64.whl#sha256=9e3a3169de452412c4e5cfe3220c0d51178d4811f33183e53069c57de49253ae (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6) 2021-07-10T11:10:18,616 Found link https://files.pythonhosted.org/packages/94/69/20b124a032b37c73ac56708744cbf2542cbc3e31390f261853ca5a6f62fe/whatshap-1.1.tar.gz#sha256=4e6486e6ce2babf55a225dd9e0030df6fcc27629d34803428cbe88a79137bb6f (from https://pypi.org/simple/whatshap/) (requires-python:>=3.6), version: 1.1 2021-07-10T11:10:18,616 Skipping link: not a file: https://pypi.org/simple/whatshap/ 2021-07-10T11:10:18,619 Given no hashes to check 1 links for project 'whatshap': discarding no candidates 2021-07-10T11:10:18,638 Collecting whatshap==0.9 2021-07-10T11:10:18,639 Created temporary directory: /tmp/pip-unpack-b3m7ld7e 2021-07-10T11:10:18,965 Downloading whatshap-0.9.tar.gz (132 kB) 2021-07-10T11:10:19,157 Added whatshap==0.9 from https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz#sha256=beaadbc79e4d463b5e441b8e9a13b5345c07db3d91fb093cee1bfebfebae4442 to build tracker '/tmp/pip-req-tracker-nmz33tj0' 2021-07-10T11:10:19,158 Running setup.py (path:/tmp/pip-wheel-mlb45_4w/whatshap_6f7aaea33f4f4b96af3326088e6e7667/setup.py) egg_info for package whatshap 2021-07-10T11:10:19,159 Created temporary directory: /tmp/pip-pip-egg-info-2lasu6p1 2021-07-10T11:10:19,159 Running command python setup.py egg_info 2021-07-10T11:10:19,982 running egg_info 2021-07-10T11:10:19,984 creating /tmp/pip-pip-egg-info-2lasu6p1/whatshap.egg-info 2021-07-10T11:10:19,985 writing /tmp/pip-pip-egg-info-2lasu6p1/whatshap.egg-info/PKG-INFO 2021-07-10T11:10:19,987 writing dependency_links to /tmp/pip-pip-egg-info-2lasu6p1/whatshap.egg-info/dependency_links.txt 2021-07-10T11:10:19,989 writing requirements to /tmp/pip-pip-egg-info-2lasu6p1/whatshap.egg-info/requires.txt 2021-07-10T11:10:19,989 writing top-level names to /tmp/pip-pip-egg-info-2lasu6p1/whatshap.egg-info/top_level.txt 2021-07-10T11:10:19,991 writing manifest file '/tmp/pip-pip-egg-info-2lasu6p1/whatshap.egg-info/SOURCES.txt' 2021-07-10T11:10:20,314 reading manifest file '/tmp/pip-pip-egg-info-2lasu6p1/whatshap.egg-info/SOURCES.txt' 2021-07-10T11:10:20,316 reading manifest template 'MANIFEST.in' 2021-07-10T11:10:20,324 writing manifest file '/tmp/pip-pip-egg-info-2lasu6p1/whatshap.egg-info/SOURCES.txt' 2021-07-10T11:10:20,401 Source in /tmp/pip-wheel-mlb45_4w/whatshap_6f7aaea33f4f4b96af3326088e6e7667 has version 0.9, which satisfies requirement whatshap==0.9 from https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz#sha256=beaadbc79e4d463b5e441b8e9a13b5345c07db3d91fb093cee1bfebfebae4442 2021-07-10T11:10:20,402 Removed whatshap==0.9 from https://files.pythonhosted.org/packages/35/95/43ff2304cd59ade39e64aadaeaec48e8c12bbe6262bcbbbd7b7d89487757/whatshap-0.9.tar.gz#sha256=beaadbc79e4d463b5e441b8e9a13b5345c07db3d91fb093cee1bfebfebae4442 from build tracker '/tmp/pip-req-tracker-nmz33tj0' 2021-07-10T11:10:20,405 Created temporary directory: /tmp/pip-unpack-_1iou8lt 2021-07-10T11:10:20,406 Building wheels for collected packages: whatshap 2021-07-10T11:10:20,410 Created temporary directory: /tmp/pip-wheel-uvmimatg 2021-07-10T11:10:20,410 Building wheel for whatshap (setup.py): started 2021-07-10T11:10:20,410 Destination directory: /tmp/pip-wheel-uvmimatg 2021-07-10T11:10:20,411 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mlb45_4w/whatshap_6f7aaea33f4f4b96af3326088e6e7667/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mlb45_4w/whatshap_6f7aaea33f4f4b96af3326088e6e7667/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-uvmimatg 2021-07-10T11:10:21,259 running bdist_wheel 2021-07-10T11:10:21,417 running build 2021-07-10T11:10:21,417 running build_py 2021-07-10T11:10:21,556 creating build 2021-07-10T11:10:21,557 creating build/lib.linux-armv7l-3.9 2021-07-10T11:10:21,557 creating build/lib.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,559 copying whatshap/vcf.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,561 copying whatshap/core.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,563 copying whatshap/graph.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,564 copying whatshap/verification.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,566 copying whatshap/__init__.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,568 copying whatshap/bam.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,570 copying whatshap/args.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,572 copying whatshap/coverage.py -> build/lib.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,574 creating build/lib.linux-armv7l-3.9/whatshap/scripts 2021-07-10T11:10:21,575 copying whatshap/scripts/whatshap.py -> build/lib.linux-armv7l-3.9/whatshap/scripts 2021-07-10T11:10:21,578 copying whatshap/scripts/phasingstats.py -> build/lib.linux-armv7l-3.9/whatshap/scripts 2021-07-10T11:10:21,581 copying whatshap/scripts/__init__.py -> build/lib.linux-armv7l-3.9/whatshap/scripts 2021-07-10T11:10:21,584 running build_ext 2021-07-10T11:10:21,590 building 'whatshap._core' extension 2021-07-10T11:10:21,591 creating build/temp.linux-armv7l-3.9 2021-07-10T11:10:21,591 creating build/temp.linux-armv7l-3.9/src 2021-07-10T11:10:21,593 creating build/temp.linux-armv7l-3.9/whatshap 2021-07-10T11:10:21,593 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/columncostcomputer.cpp -o build/temp.linux-armv7l-3.9/src/columncostcomputer.o -std=c++0x 2021-07-10T11:10:22,992 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/columnindexingiterator.cpp -o build/temp.linux-armv7l-3.9/src/columnindexingiterator.o -std=c++0x 2021-07-10T11:10:24,104 src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::dual_index(unsigned int)’: 2021-07-10T11:10:24,105 src/columnindexingiterator.cpp:101:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:10:24,105 101 | for(int j=0; j< parent->read_ids.size(); ++j) { // compute the dual of i 2021-07-10T11:10:24,105 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:24,106 src/columnindexingiterator.cpp: In member function ‘unsigned int ColumnIndexingIterator::index_forward_projection(unsigned int)’: 2021-07-10T11:10:24,106 src/columnindexingiterator.cpp:115:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:10:24,106 115 | for(int j=0; j< parent->read_ids.size(); ++j) { 2021-07-10T11:10:24,106 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:24,107 src/columnindexingiterator.cpp:117:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T11:10:24,107 117 | if(m != -1) { 2021-07-10T11:10:24,107 | ~~^~~~~ 2021-07-10T11:10:24,108 src/columnindexingiterator.cpp:114:16: warning: unused variable ‘s’ [-Wunused-variable] 2021-07-10T11:10:24,108 114 | unsigned int s = 1; 2021-07-10T11:10:24,108 | ^ 2021-07-10T11:10:24,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/columnindexingscheme.cpp -o build/temp.linux-armv7l-3.9/src/columnindexingscheme.o -std=c++0x 2021-07-10T11:10:25,502 src/columnindexingscheme.cpp: In constructor ‘ColumnIndexingScheme::ColumnIndexingScheme(const ColumnIndexingScheme*, const std::vector&)’: 2021-07-10T11:10:25,502 src/columnindexingscheme.cpp:20:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:10:25,502 20 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:10:25,503 20 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:10:25,505 63 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:10:25,506 63 | while ((iread_ids.size()) && (j::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:10:27,505 36 | return n < positions->size(); 2021-07-10T11:10:27,505 | ~~^~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:27,539 src/columniterator.cpp: In member function ‘std::unique_ptr > ColumnIterator::get_next()’: 2021-07-10T11:10:27,539 src/columniterator.cpp:59:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-10T11:10:27,539 59 | while (next_read_index < set.size()) { 2021-07-10T11:10:27,539 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2021-07-10T11:10:28,426 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/dptable.cpp -o build/temp.linux-armv7l-3.9/src/dptable.o -std=c++0x 2021-07-10T11:10:30,169 src/dptable.cpp: In member function ‘void DPTable::compute_table()’: 2021-07-10T11:10:30,171 src/dptable.cpp:106:10: warning: unused variable ‘pc’ [-Wunused-variable] 2021-07-10T11:10:30,172 106 | double pc = pi; 2021-07-10T11:10:30,172 | ^~ 2021-07-10T11:10:30,172 src/dptable.cpp:107:16: warning: unused variable ‘nc’ [-Wunused-variable] 2021-07-10T11:10:30,172 107 | unsigned int nc = column_iterator.get_column_count(); 2021-07-10T11:10:30,172 | ^~ 2021-07-10T11:10:31,571 src/dptable.cpp:260:23: warning: ‘running_optimal_score_index’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-10T11:10:31,571 260 | optimal_score_index = running_optimal_score_index; 2021-07-10T11:10:31,571 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:31,571 src/dptable.cpp:259:17: warning: ‘running_optimal_score’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-10T11:10:31,572 259 | optimal_score = running_optimal_score; 2021-07-10T11:10:31,572 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:32,275 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/entry.cpp -o build/temp.linux-armv7l-3.9/src/entry.o -std=c++0x 2021-07-10T11:10:33,117 src/entry.cpp: In function ‘std::ostream& operator<<(std::ostream&, const Entry&)’: 2021-07-10T11:10:33,117 src/entry.cpp:39:1: warning: no return statement in function returning non-void [-Wreturn-type] 2021-07-10T11:10:33,117 39 | } 2021-07-10T11:10:33,117 | ^ 2021-07-10T11:10:33,314 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/graycodes.cpp -o build/temp.linux-armv7l-3.9/src/graycodes.o -std=c++0x 2021-07-10T11:10:34,366 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/indexset.cpp -o build/temp.linux-armv7l-3.9/src/indexset.o -std=c++0x 2021-07-10T11:10:35,966 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/read.cpp -o build/temp.linux-armv7l-3.9/src/read.o -std=c++0x 2021-07-10T11:10:38,898 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/readset.cpp -o build/temp.linux-armv7l-3.9/src/readset.o -std=c++0x 2021-07-10T11:10:43,491 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c whatshap/_core.cpp -o build/temp.linux-armv7l-3.9/whatshap/_core.o -std=c++0x 2021-07-10T11:10:45,476 whatshap/_core.cpp: In function ‘void __Pyx_ReraiseException()’: 2021-07-10T11:10:45,476 whatshap/_core.cpp:863:20: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T11:10:45,476 863 | type = tstate->exc_type; 2021-07-10T11:10:45,476 | ^~~~~~~~ 2021-07-10T11:10:45,477 | curexc_type 2021-07-10T11:10:45,477 whatshap/_core.cpp:864:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T11:10:45,477 864 | value = tstate->exc_value; 2021-07-10T11:10:45,477 | ^~~~~~~~~ 2021-07-10T11:10:45,477 | curexc_value 2021-07-10T11:10:45,477 whatshap/_core.cpp:865:18: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T11:10:45,478 865 | tb = tstate->exc_traceback; 2021-07-10T11:10:45,478 | ^~~~~~~~~~~~~ 2021-07-10T11:10:45,478 | curexc_traceback 2021-07-10T11:10:45,635 whatshap/_core.cpp: In function ‘void __pyx_f_8whatshap_5_core_13PriorityQueue__sift_down(__pyx_obj_8whatshap_5_core_PriorityQueue*, int)’: 2021-07-10T11:10:45,635 whatshap/_core.cpp:6287:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*, int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:10:45,635 6287 | __pyx_t_1 = ((__pyx_v_rchildindex < __pyx_v_self->heap.size()) != 0); 2021-07-10T11:10:45,635 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,636 whatshap/_core.cpp:6376:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector*, int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:10:45,636 6376 | __pyx_t_1 = ((__pyx_v_lchildindex < __pyx_v_self->heap.size()) != 0); 2021-07-10T11:10:45,636 | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,927 whatshap/_core.cpp: In function ‘PyObject* PyInit__core()’: 2021-07-10T11:10:45,927 whatshap/_core.cpp:13694:38: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,928 13694 | __pyx_type_8whatshap_5_core_PyRead.tp_print = 0; 2021-07-10T11:10:45,928 | ^~~~~~~~ 2021-07-10T11:10:45,930 whatshap/_core.cpp:13738:41: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,930 13738 | __pyx_type_8whatshap_5_core_PyReadSet.tp_print = 0; 2021-07-10T11:10:45,930 | ^~~~~~~~ 2021-07-10T11:10:45,930 whatshap/_core.cpp:13742:41: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,930 13742 | __pyx_type_8whatshap_5_core_PyDPTable.tp_print = 0; 2021-07-10T11:10:45,930 | ^~~~~~~~ 2021-07-10T11:10:45,931 whatshap/_core.cpp:13757:45: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,931 13757 | __pyx_type_8whatshap_5_core_PriorityQueue.tp_print = 0; 2021-07-10T11:10:45,932 | ^~~~~~~~ 2021-07-10T11:10:45,932 whatshap/_core.cpp:13772:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,933 13772 | __pyx_type_8whatshap_5_core___pyx_scope_struct____iter__.tp_print = 0; 2021-07-10T11:10:45,933 | ^~~~~~~~ 2021-07-10T11:10:45,933 whatshap/_core.cpp:13775:61: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,933 13775 | __pyx_type_8whatshap_5_core___pyx_scope_struct_1___iter__.tp_print = 0; 2021-07-10T11:10:45,933 | ^~~~~~~~ 2021-07-10T11:10:45,933 whatshap/_core.cpp:13778:77: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,933 13778 | __pyx_type_8whatshap_5_core___pyx_scope_struct_2_format_read_source_stats.tp_print = 0; 2021-07-10T11:10:45,934 | ^~~~~~~~ 2021-07-10T11:10:45,934 whatshap/_core.cpp:13781:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,934 13781 | __pyx_type_8whatshap_5_core___pyx_scope_struct_3_genexpr.tp_print = 0; 2021-07-10T11:10:45,934 | ^~~~~~~~ 2021-07-10T11:10:45,934 whatshap/_core.cpp:13784:66: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,934 13784 | __pyx_type_8whatshap_5_core___pyx_scope_struct_4_readselection.tp_print = 0; 2021-07-10T11:10:45,934 | ^~~~~~~~ 2021-07-10T11:10:45,934 whatshap/_core.cpp:13787:60: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T11:10:45,935 13787 | __pyx_type_8whatshap_5_core___pyx_scope_struct_5_genexpr.tp_print = 0; 2021-07-10T11:10:45,935 | ^~~~~~~~ 2021-07-10T11:10:45,948 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:10:45,949 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:10:45,949 from whatshap/_core.cpp:34: 2021-07-10T11:10:45,949 whatshap/_core.cpp: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject***, PyObject*, PyObject**, Py_ssize_t, const char*)’: 2021-07-10T11:10:45,949 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,949 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-10T11:10:45,949 | ^ 2021-07-10T11:10:45,950 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-10T11:10:45,950 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-10T11:10:45,950 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,950 whatshap/_core.cpp:14139:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,950 14139 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,950 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,950 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:10:45,951 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:10:45,951 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,951 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,951 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-10T11:10:45,951 | ^ 2021-07-10T11:10:45,951 whatshap/_core.cpp:14139:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,951 14139 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,952 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,952 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T11:10:45,952 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T11:10:45,952 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,952 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,952 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-10T11:10:45,952 | ^ 2021-07-10T11:10:45,952 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-10T11:10:45,953 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-10T11:10:45,953 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,953 whatshap/_core.cpp:14139:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,953 14139 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,953 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,953 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:10:45,953 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:10:45,953 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,954 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,954 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-10T11:10:45,954 | ^ 2021-07-10T11:10:45,954 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-10T11:10:45,954 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-10T11:10:45,954 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,954 whatshap/_core.cpp:14139:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,955 14139 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,955 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,955 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:10:45,955 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:10:45,955 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,955 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,955 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-10T11:10:45,955 | ^ 2021-07-10T11:10:45,956 whatshap/_core.cpp:14139:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,956 14139 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,956 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,956 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T11:10:45,956 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T11:10:45,956 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,956 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,956 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-10T11:10:45,957 | ^ 2021-07-10T11:10:45,957 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-10T11:10:45,957 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-10T11:10:45,957 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,957 whatshap/_core.cpp:14139:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,957 14139 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,957 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,958 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:10:45,958 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:10:45,958 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,958 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,958 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-10T11:10:45,958 | ^ 2021-07-10T11:10:45,958 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-10T11:10:45,959 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-10T11:10:45,959 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,959 whatshap/_core.cpp:14155:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,959 14155 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,959 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,959 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:10:45,959 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:10:45,959 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,960 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,960 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-10T11:10:45,960 | ^ 2021-07-10T11:10:45,960 whatshap/_core.cpp:14155:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,960 14155 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,960 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,960 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T11:10:45,961 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T11:10:45,961 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,961 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,961 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-10T11:10:45,961 | ^ 2021-07-10T11:10:45,961 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-10T11:10:45,962 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-10T11:10:45,962 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,962 whatshap/_core.cpp:14155:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,962 14155 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,962 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,962 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:10:45,962 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:10:45,962 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,963 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,963 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-10T11:10:45,963 | ^ 2021-07-10T11:10:45,963 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-10T11:10:45,963 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-10T11:10:45,963 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,963 whatshap/_core.cpp:14155:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,964 14155 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,964 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,964 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:10:45,964 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:10:45,964 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,964 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,964 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-10T11:10:45,964 | ^ 2021-07-10T11:10:45,965 whatshap/_core.cpp:14155:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,965 14155 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,965 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,965 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T11:10:45,965 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T11:10:45,965 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,965 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,966 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-10T11:10:45,966 | ^ 2021-07-10T11:10:45,966 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-10T11:10:45,966 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-10T11:10:45,966 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,966 whatshap/_core.cpp:14155:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-10T11:10:45,966 14155 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:10:45,967 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,967 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:10:45,967 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:10:45,967 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,967 whatshap/_core.cpp: In function ‘PyObject* __Pyx_decode_c_bytes(const char*, Py_ssize_t, Py_ssize_t, Py_ssize_t, const char*, const char*, PyObject* (*)(const char*, Py_ssize_t, const char*))’: 2021-07-10T11:10:45,967 whatshap/_core.cpp:14337:45: warning: ‘PyObject* PyUnicode_FromUnicode(const Py_UNICODE*, Py_ssize_t)’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:10:45,967 14337 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-10T11:10:45,968 | ^ 2021-07-10T11:10:45,968 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:10:45,968 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:10:45,968 from whatshap/_core.cpp:34: 2021-07-10T11:10:45,968 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-10T11:10:45,968 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-10T11:10:45,968 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:10:45,973 whatshap/_core.cpp: In function ‘void __Pyx_ExceptionSave(PyObject**, PyObject**, PyObject**)’: 2021-07-10T11:10:45,973 whatshap/_core.cpp:14689:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T11:10:45,973 14689 | *type = tstate->exc_type; 2021-07-10T11:10:45,973 | ^~~~~~~~ 2021-07-10T11:10:45,974 | curexc_type 2021-07-10T11:10:45,974 whatshap/_core.cpp:14690:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T11:10:45,974 14690 | *value = tstate->exc_value; 2021-07-10T11:10:45,974 | ^~~~~~~~~ 2021-07-10T11:10:45,974 | curexc_value 2021-07-10T11:10:45,974 whatshap/_core.cpp:14691:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T11:10:45,974 14691 | *tb = tstate->exc_traceback; 2021-07-10T11:10:45,975 | ^~~~~~~~~~~~~ 2021-07-10T11:10:45,975 | curexc_traceback 2021-07-10T11:10:45,975 whatshap/_core.cpp: In function ‘void __Pyx_ExceptionReset(PyObject*, PyObject*, PyObject*)’: 2021-07-10T11:10:45,975 whatshap/_core.cpp:14703:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T11:10:45,975 14703 | tmp_type = tstate->exc_type; 2021-07-10T11:10:45,975 | ^~~~~~~~ 2021-07-10T11:10:45,975 | curexc_type 2021-07-10T11:10:45,975 whatshap/_core.cpp:14704:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T11:10:45,976 14704 | tmp_value = tstate->exc_value; 2021-07-10T11:10:45,976 | ^~~~~~~~~ 2021-07-10T11:10:45,976 | curexc_value 2021-07-10T11:10:45,976 whatshap/_core.cpp:14705:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T11:10:45,976 14705 | tmp_tb = tstate->exc_traceback; 2021-07-10T11:10:45,976 | ^~~~~~~~~~~~~ 2021-07-10T11:10:45,976 | curexc_traceback 2021-07-10T11:10:45,976 whatshap/_core.cpp:14706:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T11:10:45,977 14706 | tstate->exc_type = type; 2021-07-10T11:10:45,977 | ^~~~~~~~ 2021-07-10T11:10:45,977 | curexc_type 2021-07-10T11:10:45,977 whatshap/_core.cpp:14707:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T11:10:45,977 14707 | tstate->exc_value = value; 2021-07-10T11:10:45,977 | ^~~~~~~~~ 2021-07-10T11:10:45,977 | curexc_value 2021-07-10T11:10:45,977 whatshap/_core.cpp:14708:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T11:10:45,978 14708 | tstate->exc_traceback = tb; 2021-07-10T11:10:45,978 | ^~~~~~~~~~~~~ 2021-07-10T11:10:45,978 | curexc_traceback 2021-07-10T11:10:45,978 whatshap/_core.cpp: In function ‘int __Pyx_GetException(PyObject**, PyObject**, PyObject**)’: 2021-07-10T11:10:45,978 whatshap/_core.cpp:14751:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T11:10:45,978 14751 | tmp_type = tstate->exc_type; 2021-07-10T11:10:45,978 | ^~~~~~~~ 2021-07-10T11:10:45,979 | curexc_type 2021-07-10T11:10:45,979 whatshap/_core.cpp:14752:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T11:10:45,979 14752 | tmp_value = tstate->exc_value; 2021-07-10T11:10:45,979 | ^~~~~~~~~ 2021-07-10T11:10:45,979 | curexc_value 2021-07-10T11:10:45,979 whatshap/_core.cpp:14753:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T11:10:45,979 14753 | tmp_tb = tstate->exc_traceback; 2021-07-10T11:10:45,980 | ^~~~~~~~~~~~~ 2021-07-10T11:10:45,980 | curexc_traceback 2021-07-10T11:10:45,980 whatshap/_core.cpp:14754:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T11:10:45,980 14754 | tstate->exc_type = local_type; 2021-07-10T11:10:45,980 | ^~~~~~~~ 2021-07-10T11:10:45,980 | curexc_type 2021-07-10T11:10:45,980 whatshap/_core.cpp:14755:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T11:10:45,980 14755 | tstate->exc_value = local_value; 2021-07-10T11:10:45,981 | ^~~~~~~~~ 2021-07-10T11:10:45,981 | curexc_value 2021-07-10T11:10:45,981 whatshap/_core.cpp:14756:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T11:10:45,981 14756 | tstate->exc_traceback = local_tb; 2021-07-10T11:10:45,981 | ^~~~~~~~~~~~~ 2021-07-10T11:10:45,981 | curexc_traceback 2021-07-10T11:10:46,005 whatshap/_core.cpp: In function ‘void __Pyx_ExceptionSwap(PyObject**, PyObject**, PyObject**)’: 2021-07-10T11:10:46,005 whatshap/_core.cpp:15632:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T11:10:46,005 15632 | tmp_type = tstate->exc_type; 2021-07-10T11:10:46,006 | ^~~~~~~~ 2021-07-10T11:10:46,006 | curexc_type 2021-07-10T11:10:46,006 whatshap/_core.cpp:15633:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T11:10:46,006 15633 | tmp_value = tstate->exc_value; 2021-07-10T11:10:46,006 | ^~~~~~~~~ 2021-07-10T11:10:46,006 | curexc_value 2021-07-10T11:10:46,006 whatshap/_core.cpp:15634:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T11:10:46,007 15634 | tmp_tb = tstate->exc_traceback; 2021-07-10T11:10:46,007 | ^~~~~~~~~~~~~ 2021-07-10T11:10:46,007 | curexc_traceback 2021-07-10T11:10:46,007 whatshap/_core.cpp:15635:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T11:10:46,007 15635 | tstate->exc_type = *type; 2021-07-10T11:10:46,007 | ^~~~~~~~ 2021-07-10T11:10:46,007 | curexc_type 2021-07-10T11:10:46,007 whatshap/_core.cpp:15636:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T11:10:46,008 15636 | tstate->exc_value = *value; 2021-07-10T11:10:46,008 | ^~~~~~~~~ 2021-07-10T11:10:46,008 | curexc_value 2021-07-10T11:10:46,008 whatshap/_core.cpp:15637:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T11:10:46,008 15637 | tstate->exc_traceback = *tb; 2021-07-10T11:10:46,008 | ^~~~~~~~~~~~~ 2021-07-10T11:10:46,008 | curexc_traceback 2021-07-10T11:10:46,561 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T11:10:46,635 Building wheel for whatshap (setup.py): finished with status 'error' 2021-07-10T11:10:46,636 ERROR: Failed building wheel for whatshap 2021-07-10T11:10:46,637 Running setup.py clean for whatshap 2021-07-10T11:10:46,637 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-mlb45_4w/whatshap_6f7aaea33f4f4b96af3326088e6e7667/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-mlb45_4w/whatshap_6f7aaea33f4f4b96af3326088e6e7667/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T11:10:47,470 running clean 2021-07-10T11:10:47,472 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T11:10:47,479 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T11:10:47,486 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T11:10:47,486 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T11:10:47,486 removing 'build' 2021-07-10T11:10:47,545 Failed to build whatshap 2021-07-10T11:10:47,546 ERROR: Failed to build one or more wheels 2021-07-10T11:10:47,546 Exception information: 2021-07-10T11:10:47,546 Traceback (most recent call last): 2021-07-10T11:10:47,546 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T11:10:47,546 status = self.run(options, args) 2021-07-10T11:10:47,546 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T11:10:47,546 return func(self, options, args) 2021-07-10T11:10:47,546 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T11:10:47,546 raise CommandError( 2021-07-10T11:10:47,546 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T11:10:47,549 Removed build tracker: '/tmp/pip-req-tracker-nmz33tj0'