2021-07-10T11:33:30,725 Created temporary directory: /tmp/pip-ephem-wheel-cache-ppnfok2e 2021-07-10T11:33:30,728 Created temporary directory: /tmp/pip-req-tracker-d0btqiw1 2021-07-10T11:33:30,728 Initialized build tracking at /tmp/pip-req-tracker-d0btqiw1 2021-07-10T11:33:30,728 Created build tracker: /tmp/pip-req-tracker-d0btqiw1 2021-07-10T11:33:30,728 Entered build tracker: /tmp/pip-req-tracker-d0btqiw1 2021-07-10T11:33:30,729 Created temporary directory: /tmp/pip-wheel-jbyajwbc 2021-07-10T11:33:30,761 1 location(s) to search for versions of coral: 2021-07-10T11:33:30,761 * https://pypi.org/simple/coral/ 2021-07-10T11:33:30,762 Fetching project page and analyzing links: https://pypi.org/simple/coral/ 2021-07-10T11:33:30,762 Getting page https://pypi.org/simple/coral/ 2021-07-10T11:33:30,764 Found index url https://pypi.org/simple 2021-07-10T11:33:30,859 Found link https://files.pythonhosted.org/packages/44/48/4d4128d36f48447200db44d95130825a167676ad8961c5f20d96e2e253c7/coral-0.1.0.tar.gz#sha256=b9195ce592355fe6406111ce9cb7efa20770c4e3715853b785deae1cc68a8a42 (from https://pypi.org/simple/coral/), version: 0.1.0 2021-07-10T11:33:30,859 Found link https://files.pythonhosted.org/packages/5e/32/a978f786759decac49a3c01bc90b0ee0ca3d7057f144a8c34bcf8a04fcfa/coral-0.2.1.tar.gz#sha256=e276992eb9b27b444f610021fd56b2f2ee07c2a0f9adfcefea9924f470756e93 (from https://pypi.org/simple/coral/), version: 0.2.1 2021-07-10T11:33:30,860 Found link https://files.pythonhosted.org/packages/2e/93/013c15b7a8f45cf10db8407bcd093a36509c5d8e5401d549b3d9dd56188e/coral-0.3.0.tar.gz#sha256=defd18ef9b8edd3f4bc384a12a871a8678ab33ca26f822246730bd2fefeb5e58 (from https://pypi.org/simple/coral/), version: 0.3.0 2021-07-10T11:33:30,860 Found link https://files.pythonhosted.org/packages/0d/f0/fae5d6f962af4feca22ead719f30b8bffe9c72b39fc31c7ed784d367a4e5/coral-0.3.1.tar.gz#sha256=c2333204fcb0e538f71dc96e0ea2c4558a8f421e4b5c236c1757d8a9c263d0d6 (from https://pypi.org/simple/coral/), version: 0.3.1 2021-07-10T11:33:30,860 Found link https://files.pythonhosted.org/packages/93/9c/b1b04b1b899d4bbfa1ec0253d64fa314eb23d23a34a0e07cee70b9f2ae35/coral-0.3.2.tar.gz#sha256=4778b352cb88a45b13e0793305e3c9909538238be5dad487fa3a9aa3bd9c417a (from https://pypi.org/simple/coral/), version: 0.3.2 2021-07-10T11:33:30,861 Found link https://files.pythonhosted.org/packages/dd/eb/cab2e724fe9df60cea55d5df16a12999cb302e628f4069623cf4b3022b96/coral-0.3.3.tar.gz#sha256=5ba04b738b3b66c4e352e9e8a952c0f18c5199957c41babb891417f065a2e3a6 (from https://pypi.org/simple/coral/), version: 0.3.3 2021-07-10T11:33:30,861 Found link https://files.pythonhosted.org/packages/e0/98/e39408ac64c87765767caa582aff07b66d2f31329cb1647712c44fa99f1c/coral-0.3.4.tar.gz#sha256=d5b9123939c2a90b7bc195a58981a7a9c174d18325ac659458ecdba0602ac56c (from https://pypi.org/simple/coral/), version: 0.3.4 2021-07-10T11:33:30,861 Found link https://files.pythonhosted.org/packages/4c/3e/c067cd40b343c9f28f73a9601295d7ccca025ce4013d881d955a5ce7dfdc/coral-0.4.0.tar.gz#sha256=bc21e2ec04ed2497ab4e92877b900d9fe40352d56fd014928b7ae25946c46d5d (from https://pypi.org/simple/coral/), version: 0.4.0 2021-07-10T11:33:30,861 Found link https://files.pythonhosted.org/packages/81/3d/26bb52490da33b7045eafb6b130ae68bc05b65fbc2d17e2ea57f57f98291/coral-0.4.1.tar.gz#sha256=41ed525ee1a82c3624bdd0fc44d08aab87e3ab145505f91852c20e667a61b354 (from https://pypi.org/simple/coral/), version: 0.4.1 2021-07-10T11:33:30,862 Found link https://files.pythonhosted.org/packages/d0/36/89f1f3a35c9dc240f7ec72b157c7937a50fd4a884ff81470ecfa21f7d3f6/coral-0.4.2.tar.gz#sha256=14a5cafb8f177377df1536104bf895dc49111c76db60c2797170c990ea19fdb7 (from https://pypi.org/simple/coral/), version: 0.4.2 2021-07-10T11:33:30,862 Found link https://files.pythonhosted.org/packages/55/bb/dc671afad82512788ef48ac860bd0cacff56a7f168fe2dfa0135af8a14de/coral-0.4.3.tar.gz#sha256=8d6a7abb65ad671e5aeabcc9f2594a78baf0aa1007e9e1ece96894255eb1362e (from https://pypi.org/simple/coral/), version: 0.4.3 2021-07-10T11:33:30,862 Found link https://files.pythonhosted.org/packages/ef/3a/f46fe8052c0de4303554be16f07e9dc12c3fec80ed7672ec0a27e87ae04f/coral-0.5.0.tar.gz#sha256=f957e10217d53650219372f8def5a415064e66e1ad3a795a7489bdbea7fac38d (from https://pypi.org/simple/coral/), version: 0.5.0 2021-07-10T11:33:30,862 Skipping link: not a file: https://pypi.org/simple/coral/ 2021-07-10T11:33:30,882 Given no hashes to check 1 links for project 'coral': discarding no candidates 2021-07-10T11:33:30,900 Collecting coral==0.3.2 2021-07-10T11:33:30,902 Created temporary directory: /tmp/pip-unpack-bce28402 2021-07-10T11:33:30,942 Downloading coral-0.3.2.tar.gz (128 kB) 2021-07-10T11:33:31,131 Added coral==0.3.2 from https://files.pythonhosted.org/packages/93/9c/b1b04b1b899d4bbfa1ec0253d64fa314eb23d23a34a0e07cee70b9f2ae35/coral-0.3.2.tar.gz#sha256=4778b352cb88a45b13e0793305e3c9909538238be5dad487fa3a9aa3bd9c417a to build tracker '/tmp/pip-req-tracker-d0btqiw1' 2021-07-10T11:33:31,132 Running setup.py (path:/tmp/pip-wheel-jbyajwbc/coral_41c8524861ee43a7a8bd63225aa942cc/setup.py) egg_info for package coral 2021-07-10T11:33:31,133 Created temporary directory: /tmp/pip-pip-egg-info-8i8vv7u4 2021-07-10T11:33:31,134 Running command python setup.py egg_info 2021-07-10T11:33:32,295 running egg_info 2021-07-10T11:33:32,297 creating /tmp/pip-pip-egg-info-8i8vv7u4/coral.egg-info 2021-07-10T11:33:32,298 writing /tmp/pip-pip-egg-info-8i8vv7u4/coral.egg-info/PKG-INFO 2021-07-10T11:33:32,300 writing dependency_links to /tmp/pip-pip-egg-info-8i8vv7u4/coral.egg-info/dependency_links.txt 2021-07-10T11:33:32,302 writing requirements to /tmp/pip-pip-egg-info-8i8vv7u4/coral.egg-info/requires.txt 2021-07-10T11:33:32,303 writing top-level names to /tmp/pip-pip-egg-info-8i8vv7u4/coral.egg-info/top_level.txt 2021-07-10T11:33:32,304 writing manifest file '/tmp/pip-pip-egg-info-8i8vv7u4/coral.egg-info/SOURCES.txt' 2021-07-10T11:33:32,678 reading manifest file '/tmp/pip-pip-egg-info-8i8vv7u4/coral.egg-info/SOURCES.txt' 2021-07-10T11:33:32,680 reading manifest template 'MANIFEST.in' 2021-07-10T11:33:32,685 writing manifest file '/tmp/pip-pip-egg-info-8i8vv7u4/coral.egg-info/SOURCES.txt' 2021-07-10T11:33:32,792 Source in /tmp/pip-wheel-jbyajwbc/coral_41c8524861ee43a7a8bd63225aa942cc has version 0.3.2, which satisfies requirement coral==0.3.2 from https://files.pythonhosted.org/packages/93/9c/b1b04b1b899d4bbfa1ec0253d64fa314eb23d23a34a0e07cee70b9f2ae35/coral-0.3.2.tar.gz#sha256=4778b352cb88a45b13e0793305e3c9909538238be5dad487fa3a9aa3bd9c417a 2021-07-10T11:33:32,793 Removed coral==0.3.2 from https://files.pythonhosted.org/packages/93/9c/b1b04b1b899d4bbfa1ec0253d64fa314eb23d23a34a0e07cee70b9f2ae35/coral-0.3.2.tar.gz#sha256=4778b352cb88a45b13e0793305e3c9909538238be5dad487fa3a9aa3bd9c417a from build tracker '/tmp/pip-req-tracker-d0btqiw1' 2021-07-10T11:33:32,797 Created temporary directory: /tmp/pip-unpack-l0ja7urs 2021-07-10T11:33:32,797 Building wheels for collected packages: coral 2021-07-10T11:33:32,801 Created temporary directory: /tmp/pip-wheel-q22hdkam 2021-07-10T11:33:32,802 Building wheel for coral (setup.py): started 2021-07-10T11:33:32,802 Destination directory: /tmp/pip-wheel-q22hdkam 2021-07-10T11:33:32,802 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-jbyajwbc/coral_41c8524861ee43a7a8bd63225aa942cc/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-jbyajwbc/coral_41c8524861ee43a7a8bd63225aa942cc/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-q22hdkam 2021-07-10T11:33:33,890 running bdist_wheel 2021-07-10T11:33:34,088 running build 2021-07-10T11:33:34,088 running build_py 2021-07-10T11:33:34,222 creating build 2021-07-10T11:33:34,223 creating build/lib.linux-armv7l-3.9 2021-07-10T11:33:34,223 creating build/lib.linux-armv7l-3.9/coral 2021-07-10T11:33:34,225 copying coral/__init__.py -> build/lib.linux-armv7l-3.9/coral 2021-07-10T11:33:34,227 creating build/lib.linux-armv7l-3.9/coral/analysis 2021-07-10T11:33:34,228 copying coral/analysis/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis 2021-07-10T11:33:34,230 copying coral/analysis/utils.py -> build/lib.linux-armv7l-3.9/coral/analysis 2021-07-10T11:33:34,232 creating build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T11:33:34,233 copying coral/analysis/_sequence/tm_params.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T11:33:34,235 copying coral/analysis/_sequence/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T11:33:34,237 copying coral/analysis/_sequence/repeats.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T11:33:34,238 copying coral/analysis/_sequence/anneal.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T11:33:34,241 copying coral/analysis/_sequence/melting_temp.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequence 2021-07-10T11:33:34,244 creating build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T11:33:34,245 copying coral/analysis/_sequencing/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T11:33:34,246 copying coral/analysis/_sequencing/needle.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T11:33:34,248 copying coral/analysis/_sequencing/sanger.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T11:33:34,251 copying coral/analysis/_sequencing/align.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T11:33:34,254 creating build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T11:33:34,255 copying coral/analysis/_structure/structure_windows.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T11:33:34,257 copying coral/analysis/_structure/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T11:33:34,259 copying coral/analysis/_structure/dimers.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T11:33:34,261 copying coral/analysis/_structure/nupack.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T11:33:34,263 copying coral/analysis/_structure/vienna.py -> build/lib.linux-armv7l-3.9/coral/analysis/_structure 2021-07-10T11:33:34,266 creating build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T11:33:34,267 copying coral/constants/molecular_bio.py -> build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T11:33:34,269 copying coral/constants/__init__.py -> build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T11:33:34,271 copying coral/constants/restriction_sites.py -> build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T11:33:34,273 copying coral/constants/genbank.py -> build/lib.linux-armv7l-3.9/coral/constants 2021-07-10T11:33:34,276 creating build/lib.linux-armv7l-3.9/coral/database 2021-07-10T11:33:34,277 copying coral/database/__init__.py -> build/lib.linux-armv7l-3.9/coral/database 2021-07-10T11:33:34,278 copying coral/database/_entrez.py -> build/lib.linux-armv7l-3.9/coral/database 2021-07-10T11:33:34,280 copying coral/database/_rebase.py -> build/lib.linux-armv7l-3.9/coral/database 2021-07-10T11:33:34,282 copying coral/database/_yeast.py -> build/lib.linux-armv7l-3.9/coral/database 2021-07-10T11:33:34,285 creating build/lib.linux-armv7l-3.9/coral/design 2021-07-10T11:33:34,286 copying coral/design/__init__.py -> build/lib.linux-armv7l-3.9/coral/design 2021-07-10T11:33:34,288 copying coral/design/_primers.py -> build/lib.linux-armv7l-3.9/coral/design 2021-07-10T11:33:34,291 copying coral/design/_gibson.py -> build/lib.linux-armv7l-3.9/coral/design 2021-07-10T11:33:34,294 creating build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis 2021-07-10T11:33:34,295 copying coral/design/_oligo_synthesis/oligo_assembly.py -> build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis 2021-07-10T11:33:34,298 copying coral/design/_oligo_synthesis/__init__.py -> build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis 2021-07-10T11:33:34,300 creating build/lib.linux-armv7l-3.9/coral/design/_sequence_generation 2021-07-10T11:33:34,301 copying coral/design/_sequence_generation/random_sequences.py -> build/lib.linux-armv7l-3.9/coral/design/_sequence_generation 2021-07-10T11:33:34,303 copying coral/design/_sequence_generation/__init__.py -> build/lib.linux-armv7l-3.9/coral/design/_sequence_generation 2021-07-10T11:33:34,306 creating build/lib.linux-armv7l-3.9/coral/seqio 2021-07-10T11:33:34,306 copying coral/seqio/__init__.py -> build/lib.linux-armv7l-3.9/coral/seqio 2021-07-10T11:33:34,308 copying coral/seqio/_dna.py -> build/lib.linux-armv7l-3.9/coral/seqio 2021-07-10T11:33:34,312 creating build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T11:33:34,313 copying coral/reaction/__init__.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T11:33:34,315 copying coral/reaction/_oligo_assembly.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T11:33:34,317 copying coral/reaction/_central_dogma.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T11:33:34,319 copying coral/reaction/_pcr.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T11:33:34,321 copying coral/reaction/_gibson.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T11:33:34,323 copying coral/reaction/_resect.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T11:33:34,325 copying coral/reaction/utils.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T11:33:34,327 copying coral/reaction/_restriction.py -> build/lib.linux-armv7l-3.9/coral/reaction 2021-07-10T11:33:34,329 creating build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T11:33:34,330 copying coral/sequence/__init__.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T11:33:34,332 copying coral/sequence/_peptide.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T11:33:34,334 copying coral/sequence/_dna.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T11:33:34,337 copying coral/sequence/_sequence.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T11:33:34,339 copying coral/sequence/_rna.py -> build/lib.linux-armv7l-3.9/coral/sequence 2021-07-10T11:33:34,341 running egg_info 2021-07-10T11:33:34,354 writing coral.egg-info/PKG-INFO 2021-07-10T11:33:34,356 writing dependency_links to coral.egg-info/dependency_links.txt 2021-07-10T11:33:34,358 writing requirements to coral.egg-info/requires.txt 2021-07-10T11:33:34,359 writing top-level names to coral.egg-info/top_level.txt 2021-07-10T11:33:34,371 reading manifest file 'coral.egg-info/SOURCES.txt' 2021-07-10T11:33:34,374 reading manifest template 'MANIFEST.in' 2021-07-10T11:33:34,380 writing manifest file 'coral.egg-info/SOURCES.txt' 2021-07-10T11:33:34,384 copying coral/analysis/_sequencing/calign.c -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T11:33:34,401 creating build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T11:33:34,401 copying coral/analysis/_sequencing/data/BLOSUM62 -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T11:33:34,404 copying coral/analysis/_sequencing/data/DNA -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T11:33:34,406 copying coral/analysis/_sequencing/data/DNA_simple -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T11:33:34,408 copying coral/analysis/_sequencing/data/__init__.py -> build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data 2021-07-10T11:33:34,416 running build_ext 2021-07-10T11:33:34,420 building 'coral.analysis._sequencing.calign' extension 2021-07-10T11:33:34,420 creating build/temp.linux-armv7l-3.9 2021-07-10T11:33:34,421 creating build/temp.linux-armv7l-3.9/coral 2021-07-10T11:33:34,421 creating build/temp.linux-armv7l-3.9/coral/analysis 2021-07-10T11:33:34,422 creating build/temp.linux-armv7l-3.9/coral/analysis/_sequencing 2021-07-10T11:33:34,423 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c coral/analysis/_sequencing/calign.c -o build/temp.linux-armv7l-3.9/coral/analysis/_sequencing/calign.o 2021-07-10T11:33:34,830 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T11:33:34,831 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T11:33:34,831 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T11:33:34,831 from coral/analysis/_sequencing/calign.c:250: 2021-07-10T11:33:34,831 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T11:33:34,831 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T11:33:34,831 | ^~~~~~~ 2021-07-10T11:33:34,940 coral/analysis/_sequencing/calign.c: In function ‘__pyx_pf_5coral_8analysis_11_sequencing_6calign_2aligner’: 2021-07-10T11:33:34,942 coral/analysis/_sequencing/calign.c:3989:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:33:34,942 3989 | for (__pyx_t_19 = 1; __pyx_t_19 < __pyx_t_6; __pyx_t_19+=1) { 2021-07-10T11:33:34,942 | ^ 2021-07-10T11:33:34,943 coral/analysis/_sequencing/calign.c:4009:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T11:33:34,944 4009 | for (__pyx_t_20 = 1; __pyx_t_20 < __pyx_t_5; __pyx_t_20+=1) { 2021-07-10T11:33:34,944 | ^ 2021-07-10T11:33:35,029 coral/analysis/_sequencing/calign.c:4857:16: warning: implicit declaration of function ‘PyString_FromStringAndSize’; did you mean ‘PyBytes_FromStringAndSize’? [-Wimplicit-function-declaration] 2021-07-10T11:33:35,030 4857 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-10T11:33:35,030 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,030 | PyBytes_FromStringAndSize 2021-07-10T11:33:35,032 coral/analysis/_sequencing/calign.c:4857:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T11:33:35,032 4857 | __pyx_v_ai = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-10T11:33:35,033 | ^ 2021-07-10T11:33:35,035 coral/analysis/_sequencing/calign.c:4866:14: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T11:33:35,035 4866 | __pyx_v_aj = PyString_FromStringAndSize(NULL, __pyx_v_seqlen); 2021-07-10T11:33:35,035 | ^ 2021-07-10T11:33:35,051 coral/analysis/_sequencing/calign.c:4875:21: warning: implicit declaration of function ‘PyString_AS_STRING’; did you mean ‘PyBytes_AS_STRING’? [-Wimplicit-function-declaration] 2021-07-10T11:33:35,052 4875 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2021-07-10T11:33:35,052 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,052 | PyBytes_AS_STRING 2021-07-10T11:33:35,054 coral/analysis/_sequencing/calign.c:4875:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T11:33:35,054 4875 | __pyx_v_align_j = PyString_AS_STRING(__pyx_v_aj); 2021-07-10T11:33:35,055 | ^ 2021-07-10T11:33:35,057 coral/analysis/_sequencing/calign.c:4884:19: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T11:33:35,057 4884 | __pyx_v_align_i = PyString_AS_STRING(__pyx_v_ai); 2021-07-10T11:33:35,057 | ^ 2021-07-10T11:33:35,087 coral/analysis/_sequencing/calign.c:5163:3: warning: implicit declaration of function ‘_PyString_Resize’ [-Wimplicit-function-declaration] 2021-07-10T11:33:35,087 5163 | _PyString_Resize((&__pyx_v_aj), __pyx_v_align_counter); 2021-07-10T11:33:35,088 | ^~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,265 coral/analysis/_sequencing/calign.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T11:33:35,270 coral/analysis/_sequencing/calign.c:9978:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,271 9978 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,271 | ^ 2021-07-10T11:33:35,271 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,271 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,271 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,271 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:33:35,272 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:33:35,272 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,277 coral/analysis/_sequencing/calign.c:9978:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,277 9978 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,277 | ^ 2021-07-10T11:33:35,278 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,278 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,278 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,278 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T11:33:35,278 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T11:33:35,278 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,283 coral/analysis/_sequencing/calign.c:9978:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,284 9978 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,284 | ^ 2021-07-10T11:33:35,284 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,284 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,284 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,284 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:33:35,284 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:33:35,284 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,290 coral/analysis/_sequencing/calign.c:9978:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,290 9978 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,290 | ^ 2021-07-10T11:33:35,290 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,290 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,290 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,290 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:33:35,290 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:33:35,291 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,296 coral/analysis/_sequencing/calign.c:9978:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,296 9978 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,296 | ^ 2021-07-10T11:33:35,296 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,296 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,296 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,297 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T11:33:35,297 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T11:33:35,297 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,302 coral/analysis/_sequencing/calign.c:9978:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,302 9978 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,302 | ^ 2021-07-10T11:33:35,302 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,303 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,303 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,303 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:33:35,303 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:33:35,303 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,310 coral/analysis/_sequencing/calign.c:9994:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,310 9994 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,310 | ^ 2021-07-10T11:33:35,310 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,310 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,310 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,311 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:33:35,311 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:33:35,311 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,316 coral/analysis/_sequencing/calign.c:9994:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,316 9994 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,316 | ^ 2021-07-10T11:33:35,316 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,316 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,317 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,317 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T11:33:35,317 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T11:33:35,317 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,322 coral/analysis/_sequencing/calign.c:9994:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,322 9994 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,322 | ^ 2021-07-10T11:33:35,323 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,323 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,323 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,323 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:33:35,323 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:33:35,323 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,328 coral/analysis/_sequencing/calign.c:9994:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,328 9994 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,329 | ^ 2021-07-10T11:33:35,329 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,329 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,329 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,329 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:33:35,329 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:33:35,329 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,335 coral/analysis/_sequencing/calign.c:9994:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,335 9994 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,335 | ^ 2021-07-10T11:33:35,335 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,335 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,335 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,335 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T11:33:35,335 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T11:33:35,336 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,341 coral/analysis/_sequencing/calign.c:9994:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T11:33:35,341 9994 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T11:33:35,341 | ^ 2021-07-10T11:33:35,341 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T11:33:35,341 from /usr/include/python3.9/Python.h:97, 2021-07-10T11:33:35,341 from coral/analysis/_sequencing/calign.c:12: 2021-07-10T11:33:35,342 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T11:33:35,342 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T11:33:35,342 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T11:33:35,515 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, 2021-07-10T11:33:35,515 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T11:33:35,515 from coral/analysis/_sequencing/calign.c:250: 2021-07-10T11:33:35,515 At top level: 2021-07-10T11:33:35,515 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 2021-07-10T11:33:35,516 1464 | _import_array(void) 2021-07-10T11:33:35,516 | ^~~~~~~~~~~~~ 2021-07-10T11:33:40,749 coral/analysis/_sequencing/calign.c: In function ‘__pyx_pf_5coral_8analysis_11_sequencing_6calign_2aligner.constprop’: 2021-07-10T11:33:40,752 coral/analysis/_sequencing/calign.c:4903:13: warning: ‘__pyx_v_j’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-10T11:33:40,752 4903 | } else if (unlikely(__pyx_t_59 >= __pyx_pybuffernd_pointer.diminfo[1].shape)) __pyx_t_20 = 1; 2021-07-10T11:33:40,752 | ^ 2021-07-10T11:33:40,755 coral/analysis/_sequencing/calign.c:4899:13: warning: ‘__pyx_v_i’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-10T11:33:40,755 4899 | } else if (unlikely(__pyx_t_58 >= __pyx_pybuffernd_pointer.diminfo[0].shape)) __pyx_t_20 = 0; 2021-07-10T11:33:40,755 | ^ 2021-07-10T11:33:40,757 coral/analysis/_sequencing/calign.c:4471:3: warning: ‘__pyx_v_imethod’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-10T11:33:40,758 4471 | switch (__pyx_v_imethod) { 2021-07-10T11:33:40,758 | ^~~~~~ 2021-07-10T11:33:44,866 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/coral/analysis/_sequencing/calign.o -o build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/calign.cpython-39-arm-linux-gnueabihf.so 2021-07-10T11:33:45,011 installing to build/bdist.linux-armv7l/wheel 2021-07-10T11:33:45,011 running install 2021-07-10T11:33:45,012 running install_lib 2021-07-10T11:33:45,016 creating build/bdist.linux-armv7l 2021-07-10T11:33:45,017 creating build/bdist.linux-armv7l/wheel 2021-07-10T11:33:45,019 creating build/bdist.linux-armv7l/wheel/coral 2021-07-10T11:33:45,020 copying build/lib.linux-armv7l-3.9/coral/__init__.py -> build/bdist.linux-armv7l/wheel/coral 2021-07-10T11:33:45,023 creating build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T11:33:45,024 copying build/lib.linux-armv7l-3.9/coral/reaction/__init__.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T11:33:45,026 copying build/lib.linux-armv7l-3.9/coral/reaction/_oligo_assembly.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T11:33:45,029 copying build/lib.linux-armv7l-3.9/coral/reaction/_central_dogma.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T11:33:45,031 copying build/lib.linux-armv7l-3.9/coral/reaction/_pcr.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T11:33:45,034 copying build/lib.linux-armv7l-3.9/coral/reaction/_gibson.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T11:33:45,036 copying build/lib.linux-armv7l-3.9/coral/reaction/_resect.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T11:33:45,038 copying build/lib.linux-armv7l-3.9/coral/reaction/utils.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T11:33:45,040 copying build/lib.linux-armv7l-3.9/coral/reaction/_restriction.py -> build/bdist.linux-armv7l/wheel/coral/reaction 2021-07-10T11:33:45,042 creating build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T11:33:45,043 copying build/lib.linux-armv7l-3.9/coral/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T11:33:45,045 copying build/lib.linux-armv7l-3.9/coral/sequence/_peptide.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T11:33:45,047 copying build/lib.linux-armv7l-3.9/coral/sequence/_dna.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T11:33:45,050 copying build/lib.linux-armv7l-3.9/coral/sequence/_sequence.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T11:33:45,052 copying build/lib.linux-armv7l-3.9/coral/sequence/_rna.py -> build/bdist.linux-armv7l/wheel/coral/sequence 2021-07-10T11:33:45,055 creating build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T11:33:45,056 copying build/lib.linux-armv7l-3.9/coral/constants/molecular_bio.py -> build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T11:33:45,058 copying build/lib.linux-armv7l-3.9/coral/constants/__init__.py -> build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T11:33:45,060 copying build/lib.linux-armv7l-3.9/coral/constants/restriction_sites.py -> build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T11:33:45,062 copying build/lib.linux-armv7l-3.9/coral/constants/genbank.py -> build/bdist.linux-armv7l/wheel/coral/constants 2021-07-10T11:33:45,064 creating build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T11:33:45,065 copying build/lib.linux-armv7l-3.9/coral/database/__init__.py -> build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T11:33:45,067 copying build/lib.linux-armv7l-3.9/coral/database/_entrez.py -> build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T11:33:45,069 copying build/lib.linux-armv7l-3.9/coral/database/_rebase.py -> build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T11:33:45,071 copying build/lib.linux-armv7l-3.9/coral/database/_yeast.py -> build/bdist.linux-armv7l/wheel/coral/database 2021-07-10T11:33:45,074 creating build/bdist.linux-armv7l/wheel/coral/design 2021-07-10T11:33:45,075 copying build/lib.linux-armv7l-3.9/coral/design/__init__.py -> build/bdist.linux-armv7l/wheel/coral/design 2021-07-10T11:33:45,077 copying build/lib.linux-armv7l-3.9/coral/design/_primers.py -> build/bdist.linux-armv7l/wheel/coral/design 2021-07-10T11:33:45,080 creating build/bdist.linux-armv7l/wheel/coral/design/_sequence_generation 2021-07-10T11:33:45,080 copying build/lib.linux-armv7l-3.9/coral/design/_sequence_generation/random_sequences.py -> build/bdist.linux-armv7l/wheel/coral/design/_sequence_generation 2021-07-10T11:33:45,083 copying build/lib.linux-armv7l-3.9/coral/design/_sequence_generation/__init__.py -> build/bdist.linux-armv7l/wheel/coral/design/_sequence_generation 2021-07-10T11:33:45,085 creating build/bdist.linux-armv7l/wheel/coral/design/_oligo_synthesis 2021-07-10T11:33:45,086 copying build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis/oligo_assembly.py -> build/bdist.linux-armv7l/wheel/coral/design/_oligo_synthesis 2021-07-10T11:33:45,089 copying build/lib.linux-armv7l-3.9/coral/design/_oligo_synthesis/__init__.py -> build/bdist.linux-armv7l/wheel/coral/design/_oligo_synthesis 2021-07-10T11:33:45,091 copying build/lib.linux-armv7l-3.9/coral/design/_gibson.py -> build/bdist.linux-armv7l/wheel/coral/design 2021-07-10T11:33:45,094 creating build/bdist.linux-armv7l/wheel/coral/seqio 2021-07-10T11:33:45,094 copying build/lib.linux-armv7l-3.9/coral/seqio/__init__.py -> build/bdist.linux-armv7l/wheel/coral/seqio 2021-07-10T11:33:45,096 copying build/lib.linux-armv7l-3.9/coral/seqio/_dna.py -> build/bdist.linux-armv7l/wheel/coral/seqio 2021-07-10T11:33:45,100 creating build/bdist.linux-armv7l/wheel/coral/analysis 2021-07-10T11:33:45,100 copying build/lib.linux-armv7l-3.9/coral/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis 2021-07-10T11:33:45,103 creating build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T11:33:45,104 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequence/tm_params.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T11:33:45,106 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequence/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T11:33:45,108 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequence/repeats.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T11:33:45,110 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequence/anneal.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T11:33:45,112 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequence/melting_temp.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequence 2021-07-10T11:33:45,115 copying build/lib.linux-armv7l-3.9/coral/analysis/utils.py -> build/bdist.linux-armv7l/wheel/coral/analysis 2021-07-10T11:33:45,117 creating build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T11:33:45,118 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/calign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T11:33:45,135 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T11:33:45,138 creating build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T11:33:45,138 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data/BLOSUM62 -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T11:33:45,140 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data/DNA_simple -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T11:33:45,142 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T11:33:45,144 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/data/DNA -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing/data 2021-07-10T11:33:45,145 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/needle.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T11:33:45,147 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/sanger.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T11:33:45,149 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/calign.c -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T11:33:45,165 copying build/lib.linux-armv7l-3.9/coral/analysis/_sequencing/align.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_sequencing 2021-07-10T11:33:45,168 creating build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T11:33:45,169 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/structure_windows.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T11:33:45,171 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/__init__.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T11:33:45,172 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/dimers.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T11:33:45,174 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/nupack.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T11:33:45,177 copying build/lib.linux-armv7l-3.9/coral/analysis/_structure/vienna.py -> build/bdist.linux-armv7l/wheel/coral/analysis/_structure 2021-07-10T11:33:45,179 running install_egg_info 2021-07-10T11:33:45,188 Copying coral.egg-info to build/bdist.linux-armv7l/wheel/coral-0.3.2-py3.9.egg-info 2021-07-10T11:33:45,201 running install_scripts 2021-07-10T11:33:45,312 creating build/bdist.linux-armv7l/wheel/coral-0.3.2.dist-info/WHEEL 2021-07-10T11:33:45,314 creating '/tmp/pip-wheel-q22hdkam/coral-0.3.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T11:33:45,316 adding 'coral/__init__.py' 2021-07-10T11:33:45,318 adding 'coral/analysis/__init__.py' 2021-07-10T11:33:45,319 adding 'coral/analysis/utils.py' 2021-07-10T11:33:45,321 adding 'coral/analysis/_sequence/__init__.py' 2021-07-10T11:33:45,322 adding 'coral/analysis/_sequence/anneal.py' 2021-07-10T11:33:45,324 adding 'coral/analysis/_sequence/melting_temp.py' 2021-07-10T11:33:45,326 adding 'coral/analysis/_sequence/repeats.py' 2021-07-10T11:33:45,327 adding 'coral/analysis/_sequence/tm_params.py' 2021-07-10T11:33:45,329 adding 'coral/analysis/_sequencing/__init__.py' 2021-07-10T11:33:45,331 adding 'coral/analysis/_sequencing/align.py' 2021-07-10T11:33:45,374 adding 'coral/analysis/_sequencing/calign.c' 2021-07-10T11:33:45,490 adding 'coral/analysis/_sequencing/calign.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T11:33:45,495 adding 'coral/analysis/_sequencing/needle.py' 2021-07-10T11:33:45,498 adding 'coral/analysis/_sequencing/sanger.py' 2021-07-10T11:33:45,500 adding 'coral/analysis/_sequencing/data/BLOSUM62' 2021-07-10T11:33:45,501 adding 'coral/analysis/_sequencing/data/DNA' 2021-07-10T11:33:45,502 adding 'coral/analysis/_sequencing/data/DNA_simple' 2021-07-10T11:33:45,503 adding 'coral/analysis/_sequencing/data/__init__.py' 2021-07-10T11:33:45,505 adding 'coral/analysis/_structure/__init__.py' 2021-07-10T11:33:45,506 adding 'coral/analysis/_structure/dimers.py' 2021-07-10T11:33:45,508 adding 'coral/analysis/_structure/nupack.py' 2021-07-10T11:33:45,510 adding 'coral/analysis/_structure/structure_windows.py' 2021-07-10T11:33:45,511 adding 'coral/analysis/_structure/vienna.py' 2021-07-10T11:33:45,513 adding 'coral/constants/__init__.py' 2021-07-10T11:33:45,514 adding 'coral/constants/genbank.py' 2021-07-10T11:33:45,516 adding 'coral/constants/molecular_bio.py' 2021-07-10T11:33:45,517 adding 'coral/constants/restriction_sites.py' 2021-07-10T11:33:45,519 adding 'coral/database/__init__.py' 2021-07-10T11:33:45,520 adding 'coral/database/_entrez.py' 2021-07-10T11:33:45,522 adding 'coral/database/_rebase.py' 2021-07-10T11:33:45,524 adding 'coral/database/_yeast.py' 2021-07-10T11:33:45,525 adding 'coral/design/__init__.py' 2021-07-10T11:33:45,527 adding 'coral/design/_gibson.py' 2021-07-10T11:33:45,529 adding 'coral/design/_primers.py' 2021-07-10T11:33:45,531 adding 'coral/design/_oligo_synthesis/__init__.py' 2021-07-10T11:33:45,533 adding 'coral/design/_oligo_synthesis/oligo_assembly.py' 2021-07-10T11:33:45,535 adding 'coral/design/_sequence_generation/__init__.py' 2021-07-10T11:33:45,537 adding 'coral/design/_sequence_generation/random_sequences.py' 2021-07-10T11:33:45,538 adding 'coral/reaction/__init__.py' 2021-07-10T11:33:45,540 adding 'coral/reaction/_central_dogma.py' 2021-07-10T11:33:45,542 adding 'coral/reaction/_gibson.py' 2021-07-10T11:33:45,543 adding 'coral/reaction/_oligo_assembly.py' 2021-07-10T11:33:45,545 adding 'coral/reaction/_pcr.py' 2021-07-10T11:33:45,546 adding 'coral/reaction/_resect.py' 2021-07-10T11:33:45,548 adding 'coral/reaction/_restriction.py' 2021-07-10T11:33:45,549 adding 'coral/reaction/utils.py' 2021-07-10T11:33:45,551 adding 'coral/seqio/__init__.py' 2021-07-10T11:33:45,553 adding 'coral/seqio/_dna.py' 2021-07-10T11:33:45,555 adding 'coral/sequence/__init__.py' 2021-07-10T11:33:45,558 adding 'coral/sequence/_dna.py' 2021-07-10T11:33:45,560 adding 'coral/sequence/_peptide.py' 2021-07-10T11:33:45,561 adding 'coral/sequence/_rna.py' 2021-07-10T11:33:45,564 adding 'coral/sequence/_sequence.py' 2021-07-10T11:33:45,566 adding 'coral-0.3.2.dist-info/METADATA' 2021-07-10T11:33:45,567 adding 'coral-0.3.2.dist-info/WHEEL' 2021-07-10T11:33:45,568 adding 'coral-0.3.2.dist-info/pbr.json' 2021-07-10T11:33:45,569 adding 'coral-0.3.2.dist-info/top_level.txt' 2021-07-10T11:33:45,570 adding 'coral-0.3.2.dist-info/RECORD' 2021-07-10T11:33:45,582 removing build/bdist.linux-armv7l/wheel 2021-07-10T11:33:45,729 Building wheel for coral (setup.py): finished with status 'done' 2021-07-10T11:33:45,735 Created wheel for coral: filename=coral-0.3.2-cp39-cp39-linux_armv7l.whl size=348069 sha256=f145a6d11106366d1aa813a8eb0826bc45502a632bdb06bfa30d84037ff37e6d 2021-07-10T11:33:45,736 Stored in directory: /tmp/pip-ephem-wheel-cache-ppnfok2e/wheels/95/02/82/1f45005feeae5767e307ffe3d66083e4c52b684db96bac48a4 2021-07-10T11:33:45,748 Successfully built coral 2021-07-10T11:33:45,767 Removed build tracker: '/tmp/pip-req-tracker-d0btqiw1'