2021-07-10T11:59:02,291 Created temporary directory: /tmp/pip-ephem-wheel-cache-7b26wwmr
2021-07-10T11:59:02,294 Created temporary directory: /tmp/pip-req-tracker-mid_mnkl
2021-07-10T11:59:02,294 Initialized build tracking at /tmp/pip-req-tracker-mid_mnkl
2021-07-10T11:59:02,295 Created build tracker: /tmp/pip-req-tracker-mid_mnkl
2021-07-10T11:59:02,295 Entered build tracker: /tmp/pip-req-tracker-mid_mnkl
2021-07-10T11:59:02,295 Created temporary directory: /tmp/pip-wheel-op_0b3rr
2021-07-10T11:59:02,324 1 location(s) to search for versions of parmed:
2021-07-10T11:59:02,324 * https://pypi.org/simple/parmed/
2021-07-10T11:59:02,325 Fetching project page and analyzing links: https://pypi.org/simple/parmed/
2021-07-10T11:59:02,325 Getting page https://pypi.org/simple/parmed/
2021-07-10T11:59:02,327 Found index url https://pypi.org/simple
2021-07-10T11:59:02,509   Found link https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz#sha256=036702c47dd2f0682bdde02db74678e4628cd773983c99dd2da19479da401c34 (from https://pypi.org/simple/parmed/), version: 2.1.10
2021-07-10T11:59:02,510   Found link https://files.pythonhosted.org/packages/66/3c/f117d1069a26fd6a8153f3061827ea8b47d4ee99beb43850a93c009d0f38/ParmEd-2.5.0.tar.gz#sha256=bfa8d8346c519bbc874d7217915a7970dbec84e8790ed2e740e7952f4092a7ea (from https://pypi.org/simple/parmed/), version: 2.5.0
2021-07-10T11:59:02,510   Found link https://files.pythonhosted.org/packages/ee/c3/d59a85593e3bd0ad611567b131211b3d4966f49b9d1ac8ea94eea3c2e78c/ParmEd-2.5.1.tar.gz#sha256=4e514a3804c02bf8b74a15367d7f027f6b2f8a09dadd1edcd1fda296aa2fa86b (from https://pypi.org/simple/parmed/), version: 2.5.1
2021-07-10T11:59:02,510   Found link https://files.pythonhosted.org/packages/61/3b/78c0f325c0e96bbb5caef585ddddf304bbddc91f60f2fd1c4e2de0f49fde/ParmEd-2.7.2.tar.gz#sha256=c23535444675194695f3229e73a0369d97dbe610ab0fb6a5cc70f675b33b3058 (from https://pypi.org/simple/parmed/), version: 2.7.2
2021-07-10T11:59:02,510   Found link https://files.pythonhosted.org/packages/58/1a/b76c7180457602ecc6d2953b1d60e1930217038561e91eedc172eba74b61/ParmEd-2.7.3.tar.gz#sha256=439c6559c705e7fa88e71c6b31bf2057faf6f14462fdf22a6b26922e156db227 (from https://pypi.org/simple/parmed/), version: 2.7.3
2021-07-10T11:59:02,511   Found link https://files.pythonhosted.org/packages/6a/93/5e9fee0634f476695b405bf595577ee1e817939b5d6bf58bb55499e57cb9/ParmEd-3.0.0.tar.gz#sha256=bdf39960211548c91503161b6b5e87e1fabd69a83ef5cc0550a279b182786b72 (from https://pypi.org/simple/parmed/), version: 3.0.0
2021-07-10T11:59:02,511   Found link https://files.pythonhosted.org/packages/8a/7a/ae87eed78118f5622c278c94560126bd7d2b849417b0e28c83b1178b2ab6/ParmEd-3.0.1.tar.gz#sha256=d67f7c5babe6870e70ddb0bef4c81fc24c246610499b0e4ddddef5da9c85c719 (from https://pypi.org/simple/parmed/), version: 3.0.1
2021-07-10T11:59:02,511   Found link https://files.pythonhosted.org/packages/e0/dc/3916a326be85412af07681e151a01bfa3f2d884b97c25ff549b4a3e836a8/ParmEd-3.0.3.tar.gz#sha256=6dae69332300a320d7c849e01ebf10bcd0033018933d05f84eb172a3c86fc828 (from https://pypi.org/simple/parmed/), version: 3.0.3
2021-07-10T11:59:02,512   Found link https://files.pythonhosted.org/packages/8b/3e/4f54833855ca64ad5d9667285125c7ce9ae026cb5cc6b7c3f0a643178354/ParmEd-3.1.0.tar.gz#sha256=fc6433d0d27b27f55af0b41658aab66d3b104dc6874479be994a2e8e25892c70 (from https://pypi.org/simple/parmed/), version: 3.1.0
2021-07-10T11:59:02,512   Found link https://files.pythonhosted.org/packages/ba/a2/d6a9135efd6b1f7d70b79019a2fb2cd1472fceed979e66deaba64e2b641c/ParmEd-3.2.0.tar.gz#sha256=0c178994af736b16df3c8eaa9c54a0ac98425129c8f0228563acc094e7c6f40f (from https://pypi.org/simple/parmed/), version: 3.2.0
2021-07-10T11:59:02,512 Skipping link: not a file: https://pypi.org/simple/parmed/
2021-07-10T11:59:02,531 Given no hashes to check 1 links for project 'parmed': discarding no candidates
2021-07-10T11:59:02,550 Collecting parmed==2.1.10
2021-07-10T11:59:02,552   Created temporary directory: /tmp/pip-unpack-pduiw8mx
2021-07-10T11:59:03,448   Downloading ParmEd-2.1.10.tar.gz (2.0 MB)
2021-07-10T11:59:04,738   Added parmed==2.1.10 from https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz#sha256=036702c47dd2f0682bdde02db74678e4628cd773983c99dd2da19479da401c34 to build tracker '/tmp/pip-req-tracker-mid_mnkl'
2021-07-10T11:59:04,739     Running setup.py (path:/tmp/pip-wheel-op_0b3rr/parmed_88d96e87031d47838314ee5a2c185a73/setup.py) egg_info for package parmed
2021-07-10T11:59:04,740     Created temporary directory: /tmp/pip-pip-egg-info-erwkobo4
2021-07-10T11:59:04,740     Running command python setup.py egg_info
2021-07-10T11:59:07,559     /tmp/pip-wheel-op_0b3rr/parmed_88d96e87031d47838314ee5a2c185a73/parmed/utils/netcdf.py:754: SyntaxWarning: "is not" with a literal. Did you mean "!="?
2021-07-10T11:59:07,560       if typecode is not 'c':
2021-07-10T11:59:08,136     running egg_info
2021-07-10T11:59:08,139     creating /tmp/pip-pip-egg-info-erwkobo4/ParmEd.egg-info
2021-07-10T11:59:08,140     writing /tmp/pip-pip-egg-info-erwkobo4/ParmEd.egg-info/PKG-INFO
2021-07-10T11:59:08,142     writing dependency_links to /tmp/pip-pip-egg-info-erwkobo4/ParmEd.egg-info/dependency_links.txt
2021-07-10T11:59:08,144     writing top-level names to /tmp/pip-pip-egg-info-erwkobo4/ParmEd.egg-info/top_level.txt
2021-07-10T11:59:08,146     writing manifest file '/tmp/pip-pip-egg-info-erwkobo4/ParmEd.egg-info/SOURCES.txt'
2021-07-10T11:59:08,537     reading manifest file '/tmp/pip-pip-egg-info-erwkobo4/ParmEd.egg-info/SOURCES.txt'
2021-07-10T11:59:08,547     writing manifest file '/tmp/pip-pip-egg-info-erwkobo4/ParmEd.egg-info/SOURCES.txt'
2021-07-10T11:59:08,744   Source in /tmp/pip-wheel-op_0b3rr/parmed_88d96e87031d47838314ee5a2c185a73 has version 2.1.10, which satisfies requirement parmed==2.1.10 from https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz#sha256=036702c47dd2f0682bdde02db74678e4628cd773983c99dd2da19479da401c34
2021-07-10T11:59:08,745   Removed parmed==2.1.10 from https://files.pythonhosted.org/packages/dd/24/a0d4de0b0ff344795b09fdfcbc0bd3e7207d1554bf5fe20736a78338610d/ParmEd-2.1.10.tar.gz#sha256=036702c47dd2f0682bdde02db74678e4628cd773983c99dd2da19479da401c34 from build tracker '/tmp/pip-req-tracker-mid_mnkl'
2021-07-10T11:59:08,749 Created temporary directory: /tmp/pip-unpack-d2f8jgn2
2021-07-10T11:59:08,749 Building wheels for collected packages: parmed
2021-07-10T11:59:08,754   Created temporary directory: /tmp/pip-wheel-5ughfz6b
2021-07-10T11:59:08,754   Building wheel for parmed (setup.py): started
2021-07-10T11:59:08,754   Destination directory: /tmp/pip-wheel-5ughfz6b
2021-07-10T11:59:08,755   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-op_0b3rr/parmed_88d96e87031d47838314ee5a2c185a73/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-op_0b3rr/parmed_88d96e87031d47838314ee5a2c185a73/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5ughfz6b
2021-07-10T11:59:11,120   running bdist_wheel
2021-07-10T11:59:11,481   running build
2021-07-10T11:59:11,481   running build_py
2021-07-10T11:59:11,483   creating build
2021-07-10T11:59:11,484   creating build/lib.linux-armv7l-3.9
2021-07-10T11:59:11,484   creating build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,486   copying parmed/scripts.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,488   copying parmed/__init__.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,490   copying parmed/parameters.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,492   copying parmed/geometry.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,495   copying parmed/exceptions.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,496   copying parmed/vec3.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,498   copying parmed/structure.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,505   copying parmed/periodic_table.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,507   copying parmed/residue.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,510   copying parmed/topologyobjects.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,516   copying parmed/constants.py -> build/lib.linux-armv7l-3.9/parmed
2021-07-10T11:59:11,519   creating build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,520   copying parmed/amber/__init__.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,522   copying parmed/amber/mask.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,525   copying parmed/amber/parameters.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,528   copying parmed/amber/offlib.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,531   copying parmed/amber/_chamberparm.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,534   copying parmed/amber/asciicrd.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,537   copying parmed/amber/netcdffiles.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,540   copying parmed/amber/amberformat.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,543   copying parmed/amber/_tinkerparm.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,547   copying parmed/amber/readparm.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,549   copying parmed/amber/_amberparm.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,554   copying parmed/amber/titratable_residues.py -> build/lib.linux-armv7l-3.9/parmed/amber
2021-07-10T11:59:11,558   creating build/lib.linux-armv7l-3.9/parmed/modeller
2021-07-10T11:59:11,559   copying parmed/modeller/__init__.py -> build/lib.linux-armv7l-3.9/parmed/modeller
2021-07-10T11:59:11,561   copying parmed/modeller/residue.py -> build/lib.linux-armv7l-3.9/parmed/modeller
2021-07-10T11:59:11,565   creating build/lib.linux-armv7l-3.9/parmed/tinker
2021-07-10T11:59:11,566   copying parmed/tinker/tinkerfiles.py -> build/lib.linux-armv7l-3.9/parmed/tinker
2021-07-10T11:59:11,568   copying parmed/tinker/__init__.py -> build/lib.linux-armv7l-3.9/parmed/tinker
2021-07-10T11:59:11,570   copying parmed/tinker/parameterfile.py -> build/lib.linux-armv7l-3.9/parmed/tinker
2021-07-10T11:59:11,573   copying parmed/tinker/system.py -> build/lib.linux-armv7l-3.9/parmed/tinker
2021-07-10T11:59:11,576   copying parmed/tinker/topologyobjects.py -> build/lib.linux-armv7l-3.9/parmed/tinker
2021-07-10T11:59:11,580   creating build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,581   copying parmed/unit/unit.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,584   copying parmed/unit/__init__.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,585   copying parmed/unit/basedimension.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,587   copying parmed/unit/mymatrix.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,590   copying parmed/unit/unit_math.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,592   copying parmed/unit/unit_definitions.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,595   copying parmed/unit/quantity.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,598   copying parmed/unit/baseunit.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,600   copying parmed/unit/prefix.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,602   copying parmed/unit/standard_dimensions.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,604   copying parmed/unit/unit_operators.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,606   copying parmed/unit/constants.py -> build/lib.linux-armv7l-3.9/parmed/unit
2021-07-10T11:59:11,609   creating build/lib.linux-armv7l-3.9/parmed/amber/mdin
2021-07-10T11:59:11,610   copying parmed/amber/mdin/mdin.py -> build/lib.linux-armv7l-3.9/parmed/amber/mdin
2021-07-10T11:59:11,613   copying parmed/amber/mdin/__init__.py -> build/lib.linux-armv7l-3.9/parmed/amber/mdin
2021-07-10T11:59:11,615   copying parmed/amber/mdin/cntrl.py -> build/lib.linux-armv7l-3.9/parmed/amber/mdin
2021-07-10T11:59:11,617   copying parmed/amber/mdin/qmmm.py -> build/lib.linux-armv7l-3.9/parmed/amber/mdin
2021-07-10T11:59:11,619   copying parmed/amber/mdin/ewald.py -> build/lib.linux-armv7l-3.9/parmed/amber/mdin
2021-07-10T11:59:11,621   copying parmed/amber/mdin/pb.py -> build/lib.linux-armv7l-3.9/parmed/amber/mdin
2021-07-10T11:59:11,626   creating build/lib.linux-armv7l-3.9/parmed/charmm
2021-07-10T11:59:11,627   copying parmed/charmm/__init__.py -> build/lib.linux-armv7l-3.9/parmed/charmm
2021-07-10T11:59:11,629   copying parmed/charmm/parameters.py -> build/lib.linux-armv7l-3.9/parmed/charmm
2021-07-10T11:59:11,632   copying parmed/charmm/_charmmfile.py -> build/lib.linux-armv7l-3.9/parmed/charmm
2021-07-10T11:59:11,635   copying parmed/charmm/charmmcrds.py -> build/lib.linux-armv7l-3.9/parmed/charmm
2021-07-10T11:59:11,637   copying parmed/charmm/psf.py -> build/lib.linux-armv7l-3.9/parmed/charmm
2021-07-10T11:59:11,641   creating build/lib.linux-armv7l-3.9/parmed/formats
2021-07-10T11:59:11,642   creating build/lib.linux-armv7l-3.9/parmed/formats/pdbx
2021-07-10T11:59:11,643   copying parmed/formats/pdbx/PdbxReader.py -> build/lib.linux-armv7l-3.9/parmed/formats/pdbx
2021-07-10T11:59:11,646   copying parmed/formats/pdbx/PdbxWriter.py -> build/lib.linux-armv7l-3.9/parmed/formats/pdbx
2021-07-10T11:59:11,649   copying parmed/formats/pdbx/__init__.py -> build/lib.linux-armv7l-3.9/parmed/formats/pdbx
2021-07-10T11:59:11,650   copying parmed/formats/pdbx/PdbxContainers.py -> build/lib.linux-armv7l-3.9/parmed/formats/pdbx
2021-07-10T11:59:11,654   creating build/lib.linux-armv7l-3.9/parmed/rosetta
2021-07-10T11:59:11,655   copying parmed/rosetta/pose.py -> build/lib.linux-armv7l-3.9/parmed/rosetta
2021-07-10T11:59:11,657   copying parmed/rosetta/__init__.py -> build/lib.linux-armv7l-3.9/parmed/rosetta
2021-07-10T11:59:11,660   copying parmed/formats/__init__.py -> build/lib.linux-armv7l-3.9/parmed/formats
2021-07-10T11:59:11,662   copying parmed/formats/mol2.py -> build/lib.linux-armv7l-3.9/parmed/formats
2021-07-10T11:59:11,665   copying parmed/formats/pqr.py -> build/lib.linux-armv7l-3.9/parmed/formats
2021-07-10T11:59:11,667   copying parmed/formats/pdb.py -> build/lib.linux-armv7l-3.9/parmed/formats
2021-07-10T11:59:11,671   copying parmed/formats/psf.py -> build/lib.linux-armv7l-3.9/parmed/formats
2021-07-10T11:59:11,674   copying parmed/formats/registry.py -> build/lib.linux-armv7l-3.9/parmed/formats
2021-07-10T11:59:11,677   creating build/lib.linux-armv7l-3.9/parmed/utils
2021-07-10T11:59:11,678   creating build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,679   copying parmed/utils/fortranformat/_exceptions.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,681   copying parmed/utils/fortranformat/config.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,683   copying parmed/utils/fortranformat/__init__.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,684   copying parmed/utils/fortranformat/_parser.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,687   copying parmed/utils/fortranformat/_lexer.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,689   copying parmed/utils/fortranformat/FortranRecordWriter.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,691   copying parmed/utils/fortranformat/_output.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,693   copying parmed/utils/fortranformat/FortranRecordReader.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,695   copying parmed/utils/fortranformat/_misc.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,697   copying parmed/utils/fortranformat/_edit_descriptors.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,700   copying parmed/utils/fortranformat/_input.py -> build/lib.linux-armv7l-3.9/parmed/utils/fortranformat
2021-07-10T11:59:11,703   creating build/lib.linux-armv7l-3.9/parmed/openmm
2021-07-10T11:59:11,704   copying parmed/openmm/reporters.py -> build/lib.linux-armv7l-3.9/parmed/openmm
2021-07-10T11:59:11,707   copying parmed/openmm/__init__.py -> build/lib.linux-armv7l-3.9/parmed/openmm
2021-07-10T11:59:11,709   copying parmed/openmm/xmlfile.py -> build/lib.linux-armv7l-3.9/parmed/openmm
2021-07-10T11:59:11,711   copying parmed/openmm/utils.py -> build/lib.linux-armv7l-3.9/parmed/openmm
2021-07-10T11:59:11,713   copying parmed/openmm/topsystem.py -> build/lib.linux-armv7l-3.9/parmed/openmm
2021-07-10T11:59:11,716   copying parmed/utils/netcdf.py -> build/lib.linux-armv7l-3.9/parmed/utils
2021-07-10T11:59:11,720   copying parmed/utils/__init__.py -> build/lib.linux-armv7l-3.9/parmed/utils
2021-07-10T11:59:11,722   copying parmed/utils/timer.py -> build/lib.linux-armv7l-3.9/parmed/utils
2021-07-10T11:59:11,724   copying parmed/utils/io.py -> build/lib.linux-armv7l-3.9/parmed/utils
2021-07-10T11:59:11,726   copying parmed/utils/six.py -> build/lib.linux-armv7l-3.9/parmed/utils
2021-07-10T11:59:11,729   copying parmed/utils/decorators.py -> build/lib.linux-armv7l-3.9/parmed/utils
2021-07-10T11:59:11,731   copying parmed/utils/pandautils.py -> build/lib.linux-armv7l-3.9/parmed/utils
2021-07-10T11:59:11,734   creating build/lib.linux-armv7l-3.9/parmed/gromacs
2021-07-10T11:59:11,735   copying parmed/gromacs/_gromacsfile.py -> build/lib.linux-armv7l-3.9/parmed/gromacs
2021-07-10T11:59:11,737   copying parmed/gromacs/gromacsgro.py -> build/lib.linux-armv7l-3.9/parmed/gromacs
2021-07-10T11:59:11,740   copying parmed/gromacs/__init__.py -> build/lib.linux-armv7l-3.9/parmed/gromacs
2021-07-10T11:59:11,742   copying parmed/gromacs/_cpp.py -> build/lib.linux-armv7l-3.9/parmed/gromacs
2021-07-10T11:59:11,745   copying parmed/gromacs/gromacstop.py -> build/lib.linux-armv7l-3.9/parmed/gromacs
2021-07-10T11:59:11,751   creating build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,751   copying parmed/tools/parmlist.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,754   copying parmed/tools/coarsegrain.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,756   copying parmed/tools/changeradii.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,759   copying parmed/tools/__init__.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,761   copying parmed/tools/parmed_cmd.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,764   copying parmed/tools/exceptions.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,766   copying parmed/tools/checkvalidity.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,769   copying parmed/tools/actions.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,776   copying parmed/tools/logos.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,780   copying parmed/tools/argumentlist.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,783   copying parmed/tools/add1264.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,786   copying parmed/tools/arraytools.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,789   copying parmed/tools/addljtype.py -> build/lib.linux-armv7l-3.9/parmed/tools
2021-07-10T11:59:11,792   creating build/lib.linux-armv7l-3.9/parmed/namd
2021-07-10T11:59:11,793   copying parmed/namd/__init__.py -> build/lib.linux-armv7l-3.9/parmed/namd
2021-07-10T11:59:11,796   copying parmed/namd/namdbinfiles.py -> build/lib.linux-armv7l-3.9/parmed/namd
2021-07-10T11:59:11,800   creating build/lib.linux-armv7l-3.9/parmed/tools/gui
2021-07-10T11:59:11,801   copying parmed/tools/gui/__init__.py -> build/lib.linux-armv7l-3.9/parmed/tools/gui
2021-07-10T11:59:11,804   copying parmed/tools/gui/_guiwidgets.py -> build/lib.linux-armv7l-3.9/parmed/tools/gui
2021-07-10T11:59:11,806   copying parmed/tools/gui/guiactions.py -> build/lib.linux-armv7l-3.9/parmed/tools/gui
2021-07-10T11:59:11,809   copying parmed/tools/gui/guifiletools.py -> build/lib.linux-armv7l-3.9/parmed/tools/gui
2021-07-10T11:59:11,811   copying parmed/tools/gui/guitools.py -> build/lib.linux-armv7l-3.9/parmed/tools/gui
2021-07-10T11:59:11,814   copying parmed/tools/gui/_guiactions.py -> build/lib.linux-armv7l-3.9/parmed/tools/gui
2021-07-10T11:59:11,819   creating build/lib.linux-armv7l-3.9/parmed/tools/simulations
2021-07-10T11:59:11,820   copying parmed/tools/simulations/__init__.py -> build/lib.linux-armv7l-3.9/parmed/tools/simulations
2021-07-10T11:59:11,823   copying parmed/tools/simulations/sanderapi.py -> build/lib.linux-armv7l-3.9/parmed/tools/simulations
2021-07-10T11:59:11,825   copying parmed/tools/simulations/openmm.py -> build/lib.linux-armv7l-3.9/parmed/tools/simulations
2021-07-10T11:59:11,845   running build_ext
2021-07-10T11:59:11,851   building 'parmed.amber._rdparm' extension
2021-07-10T11:59:11,852   creating build/temp.linux-armv7l-3.9
2021-07-10T11:59:11,853   creating build/temp.linux-armv7l-3.9/src
2021-07-10T11:59:11,854   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-op_0b3rr/parmed_88d96e87031d47838314ee5a2c185a73/src -I/usr/include/python3.9 -c src/_rdparm.cpp -o build/temp.linux-armv7l-3.9/src/_rdparm.o
2021-07-10T11:59:16,517   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/tmp/pip-wheel-op_0b3rr/parmed_88d96e87031d47838314ee5a2c185a73/src -I/usr/include/python3.9 -c src/readparm.cpp -o build/temp.linux-armv7l-3.9/src/readparm.o
2021-07-10T11:59:19,114   In file included from /usr/include/c++/10/vector:72,
2021-07-10T11:59:19,114                    from src/readparm.h:8,
2021-07-10T11:59:19,114                    from src/readparm.cpp:10:
2021-07-10T11:59:19,114   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const ParmData&}; _Tp = ParmData; _Alloc = std::allocator<ParmData>]’:
2021-07-10T11:59:19,114   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<ParmData>::iterator’ changed in GCC 7.1
2021-07-10T11:59:19,115     426 |       vector<_Tp, _Alloc>::
2021-07-10T11:59:19,115         |       ^~~~~~~~~~~~~~~~~~~
2021-07-10T11:59:20,096   In file included from /usr/include/string.h:495,
2021-07-10T11:59:20,096                    from /usr/include/c++/10/cstring:42,
2021-07-10T11:59:20,096                    from src/readparm.cpp:8:
2021-07-10T11:59:20,096   In function ‘char* strncpy(char*, const char*, size_t)’,
2021-07-10T11:59:20,097       inlined from ‘ExitStatus readparm(const string&, std::vector<std::__cxx11::basic_string<char> >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’ at src/readparm.cpp:143:28:
2021-07-10T11:59:20,097   /usr/include/arm-linux-gnueabihf/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, unsigned int)’ specified bound 8 equals destination size [-Wstringop-truncation]
2021-07-10T11:59:20,097     106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
2021-07-10T11:59:20,097         |          ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-10T11:59:20,204   In file included from /usr/include/c++/10/vector:67,
2021-07-10T11:59:20,204                    from src/readparm.h:8,
2021-07-10T11:59:20,204                    from src/readparm.cpp:10:
2021-07-10T11:59:20,204   /usr/include/c++/10/bits/stl_vector.h: In function ‘ExitStatus readparm(const string&, std::vector<std::__cxx11::basic_string<char> >&, ParmDataMap&, ParmStringMap&, ParmStringMap&, ParmFormatMap&, std::string&)’:
2021-07-10T11:59:20,204   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ParmData*, std::vector<ParmData> >’ changed in GCC 7.1
2021-07-10T11:59:20,204    1198 |    _M_realloc_insert(end(), __x);
2021-07-10T11:59:20,205         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-10T11:59:20,206   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ParmData*, std::vector<ParmData> >’ changed in GCC 7.1
2021-07-10T11:59:20,206    1198 |    _M_realloc_insert(end(), __x);
2021-07-10T11:59:20,206         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-10T11:59:20,209   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<ParmData*, std::vector<ParmData> >’ changed in GCC 7.1
2021-07-10T11:59:20,209    1198 |    _M_realloc_insert(end(), __x);
2021-07-10T11:59:20,209         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2021-07-10T11:59:22,091   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/src/_rdparm.o build/temp.linux-armv7l-3.9/src/readparm.o -o build/lib.linux-armv7l-3.9/parmed/amber/_rdparm.cpython-39-arm-linux-gnueabihf.so
2021-07-10T11:59:22,422   running build_scripts
2021-07-10T11:59:22,424   creating build/scripts-3.9
2021-07-10T11:59:22,425   copying and adjusting scripts/parmed -> build/scripts-3.9
2021-07-10T11:59:22,427   copying and adjusting scripts/xparmed -> build/scripts-3.9
2021-07-10T11:59:22,429   changing mode of build/scripts-3.9/parmed from 644 to 755
2021-07-10T11:59:22,429   changing mode of build/scripts-3.9/xparmed from 644 to 755
2021-07-10T11:59:22,438   installing to build/bdist.linux-armv7l/wheel
2021-07-10T11:59:22,439   running install
2021-07-10T11:59:22,441   running install_lib
2021-07-10T11:59:22,446   creating build/bdist.linux-armv7l
2021-07-10T11:59:22,447   creating build/bdist.linux-armv7l/wheel
2021-07-10T11:59:22,450   creating build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,452   creating build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,453   copying build/lib.linux-armv7l-3.9/parmed/amber/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,456   copying build/lib.linux-armv7l-3.9/parmed/amber/mask.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,459   copying build/lib.linux-armv7l-3.9/parmed/amber/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,462   copying build/lib.linux-armv7l-3.9/parmed/amber/offlib.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,465   copying build/lib.linux-armv7l-3.9/parmed/amber/_chamberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,469   creating build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2021-07-10T11:59:22,471   copying build/lib.linux-armv7l-3.9/parmed/amber/mdin/mdin.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2021-07-10T11:59:22,474   copying build/lib.linux-armv7l-3.9/parmed/amber/mdin/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2021-07-10T11:59:22,476   copying build/lib.linux-armv7l-3.9/parmed/amber/mdin/cntrl.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2021-07-10T11:59:22,480   copying build/lib.linux-armv7l-3.9/parmed/amber/mdin/qmmm.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2021-07-10T11:59:22,482   copying build/lib.linux-armv7l-3.9/parmed/amber/mdin/ewald.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2021-07-10T11:59:22,484   copying build/lib.linux-armv7l-3.9/parmed/amber/mdin/pb.py -> build/bdist.linux-armv7l/wheel/parmed/amber/mdin
2021-07-10T11:59:22,487   copying build/lib.linux-armv7l-3.9/parmed/amber/_rdparm.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,513   copying build/lib.linux-armv7l-3.9/parmed/amber/asciicrd.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,516   copying build/lib.linux-armv7l-3.9/parmed/amber/netcdffiles.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,519   copying build/lib.linux-armv7l-3.9/parmed/amber/amberformat.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,522   copying build/lib.linux-armv7l-3.9/parmed/amber/_tinkerparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,526   copying build/lib.linux-armv7l-3.9/parmed/amber/readparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,529   copying build/lib.linux-armv7l-3.9/parmed/amber/_amberparm.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,533   copying build/lib.linux-armv7l-3.9/parmed/amber/titratable_residues.py -> build/bdist.linux-armv7l/wheel/parmed/amber
2021-07-10T11:59:22,538   creating build/bdist.linux-armv7l/wheel/parmed/rosetta
2021-07-10T11:59:22,539   copying build/lib.linux-armv7l-3.9/parmed/rosetta/pose.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta
2021-07-10T11:59:22,542   copying build/lib.linux-armv7l-3.9/parmed/rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/rosetta
2021-07-10T11:59:22,544   copying build/lib.linux-armv7l-3.9/parmed/scripts.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,547   copying build/lib.linux-armv7l-3.9/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,551   creating build/bdist.linux-armv7l/wheel/parmed/utils
2021-07-10T11:59:22,552   copying build/lib.linux-armv7l-3.9/parmed/utils/netcdf.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2021-07-10T11:59:22,557   creating build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,558   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/_exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,561   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/config.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,563   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,565   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/_parser.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,569   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/_lexer.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,572   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/FortranRecordWriter.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,574   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/_output.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,578   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/FortranRecordReader.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,580   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/_misc.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,583   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/_edit_descriptors.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,586   copying build/lib.linux-armv7l-3.9/parmed/utils/fortranformat/_input.py -> build/bdist.linux-armv7l/wheel/parmed/utils/fortranformat
2021-07-10T11:59:22,589   copying build/lib.linux-armv7l-3.9/parmed/utils/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2021-07-10T11:59:22,592   copying build/lib.linux-armv7l-3.9/parmed/utils/timer.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2021-07-10T11:59:22,594   copying build/lib.linux-armv7l-3.9/parmed/utils/io.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2021-07-10T11:59:22,597   copying build/lib.linux-armv7l-3.9/parmed/utils/six.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2021-07-10T11:59:22,601   copying build/lib.linux-armv7l-3.9/parmed/utils/decorators.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2021-07-10T11:59:22,603   copying build/lib.linux-armv7l-3.9/parmed/utils/pandautils.py -> build/bdist.linux-armv7l/wheel/parmed/utils
2021-07-10T11:59:22,607   copying build/lib.linux-armv7l-3.9/parmed/parameters.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,610   copying build/lib.linux-armv7l-3.9/parmed/geometry.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,613   copying build/lib.linux-armv7l-3.9/parmed/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,616   creating build/bdist.linux-armv7l/wheel/parmed/namd
2021-07-10T11:59:22,618   copying build/lib.linux-armv7l-3.9/parmed/namd/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/namd
2021-07-10T11:59:22,620   copying build/lib.linux-armv7l-3.9/parmed/namd/namdbinfiles.py -> build/bdist.linux-armv7l/wheel/parmed/namd
2021-07-10T11:59:22,623   copying build/lib.linux-armv7l-3.9/parmed/vec3.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,626   copying build/lib.linux-armv7l-3.9/parmed/structure.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,633   copying build/lib.linux-armv7l-3.9/parmed/periodic_table.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,637   creating build/bdist.linux-armv7l/wheel/parmed/formats
2021-07-10T11:59:22,638   copying build/lib.linux-armv7l-3.9/parmed/formats/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2021-07-10T11:59:22,641   copying build/lib.linux-armv7l-3.9/parmed/formats/mol2.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2021-07-10T11:59:22,644   copying build/lib.linux-armv7l-3.9/parmed/formats/pqr.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2021-07-10T11:59:22,648   creating build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2021-07-10T11:59:22,650   copying build/lib.linux-armv7l-3.9/parmed/formats/pdbx/PdbxReader.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2021-07-10T11:59:22,653   copying build/lib.linux-armv7l-3.9/parmed/formats/pdbx/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2021-07-10T11:59:22,656   copying build/lib.linux-armv7l-3.9/parmed/formats/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2021-07-10T11:59:22,659   copying build/lib.linux-armv7l-3.9/parmed/formats/pdbx/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/parmed/formats/pdbx
2021-07-10T11:59:22,663   copying build/lib.linux-armv7l-3.9/parmed/formats/pdb.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2021-07-10T11:59:22,667   copying build/lib.linux-armv7l-3.9/parmed/formats/psf.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2021-07-10T11:59:22,671   copying build/lib.linux-armv7l-3.9/parmed/formats/registry.py -> build/bdist.linux-armv7l/wheel/parmed/formats
2021-07-10T11:59:22,674   creating build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,676   creating build/bdist.linux-armv7l/wheel/parmed/tools/simulations
2021-07-10T11:59:22,677   copying build/lib.linux-armv7l-3.9/parmed/tools/simulations/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations
2021-07-10T11:59:22,680   copying build/lib.linux-armv7l-3.9/parmed/tools/simulations/sanderapi.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations
2021-07-10T11:59:22,683   copying build/lib.linux-armv7l-3.9/parmed/tools/simulations/openmm.py -> build/bdist.linux-armv7l/wheel/parmed/tools/simulations
2021-07-10T11:59:22,687   copying build/lib.linux-armv7l-3.9/parmed/tools/parmlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,690   copying build/lib.linux-armv7l-3.9/parmed/tools/coarsegrain.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,693   copying build/lib.linux-armv7l-3.9/parmed/tools/changeradii.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,696   copying build/lib.linux-armv7l-3.9/parmed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,698   copying build/lib.linux-armv7l-3.9/parmed/tools/parmed_cmd.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,702   copying build/lib.linux-armv7l-3.9/parmed/tools/exceptions.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,705   copying build/lib.linux-armv7l-3.9/parmed/tools/checkvalidity.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,708   copying build/lib.linux-armv7l-3.9/parmed/tools/actions.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,715   copying build/lib.linux-armv7l-3.9/parmed/tools/logos.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,717   copying build/lib.linux-armv7l-3.9/parmed/tools/argumentlist.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,720   copying build/lib.linux-armv7l-3.9/parmed/tools/add1264.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,723   copying build/lib.linux-armv7l-3.9/parmed/tools/arraytools.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,726   creating build/bdist.linux-armv7l/wheel/parmed/tools/gui
2021-07-10T11:59:22,727   copying build/lib.linux-armv7l-3.9/parmed/tools/gui/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2021-07-10T11:59:22,729   copying build/lib.linux-armv7l-3.9/parmed/tools/gui/_guiwidgets.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2021-07-10T11:59:22,732   copying build/lib.linux-armv7l-3.9/parmed/tools/gui/guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2021-07-10T11:59:22,734   copying build/lib.linux-armv7l-3.9/parmed/tools/gui/guifiletools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2021-07-10T11:59:22,737   copying build/lib.linux-armv7l-3.9/parmed/tools/gui/guitools.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2021-07-10T11:59:22,739   copying build/lib.linux-armv7l-3.9/parmed/tools/gui/_guiactions.py -> build/bdist.linux-armv7l/wheel/parmed/tools/gui
2021-07-10T11:59:22,744   copying build/lib.linux-armv7l-3.9/parmed/tools/addljtype.py -> build/bdist.linux-armv7l/wheel/parmed/tools
2021-07-10T11:59:22,747   creating build/bdist.linux-armv7l/wheel/parmed/openmm
2021-07-10T11:59:22,748   copying build/lib.linux-armv7l-3.9/parmed/openmm/reporters.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2021-07-10T11:59:22,751   copying build/lib.linux-armv7l-3.9/parmed/openmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2021-07-10T11:59:22,754   copying build/lib.linux-armv7l-3.9/parmed/openmm/xmlfile.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2021-07-10T11:59:22,756   copying build/lib.linux-armv7l-3.9/parmed/openmm/utils.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2021-07-10T11:59:22,759   copying build/lib.linux-armv7l-3.9/parmed/openmm/topsystem.py -> build/bdist.linux-armv7l/wheel/parmed/openmm
2021-07-10T11:59:22,763   creating build/bdist.linux-armv7l/wheel/parmed/charmm
2021-07-10T11:59:22,763   copying build/lib.linux-armv7l-3.9/parmed/charmm/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2021-07-10T11:59:22,766   copying build/lib.linux-armv7l-3.9/parmed/charmm/parameters.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2021-07-10T11:59:22,769   copying build/lib.linux-armv7l-3.9/parmed/charmm/_charmmfile.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2021-07-10T11:59:22,772   copying build/lib.linux-armv7l-3.9/parmed/charmm/charmmcrds.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2021-07-10T11:59:22,775   copying build/lib.linux-armv7l-3.9/parmed/charmm/psf.py -> build/bdist.linux-armv7l/wheel/parmed/charmm
2021-07-10T11:59:22,778   copying build/lib.linux-armv7l-3.9/parmed/residue.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,781   copying build/lib.linux-armv7l-3.9/parmed/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,788   creating build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,790   copying build/lib.linux-armv7l-3.9/parmed/unit/unit.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,793   copying build/lib.linux-armv7l-3.9/parmed/unit/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,795   copying build/lib.linux-armv7l-3.9/parmed/unit/basedimension.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,797   copying build/lib.linux-armv7l-3.9/parmed/unit/mymatrix.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,800   copying build/lib.linux-armv7l-3.9/parmed/unit/unit_math.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,803   copying build/lib.linux-armv7l-3.9/parmed/unit/unit_definitions.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,805   copying build/lib.linux-armv7l-3.9/parmed/unit/quantity.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,809   copying build/lib.linux-armv7l-3.9/parmed/unit/baseunit.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,811   copying build/lib.linux-armv7l-3.9/parmed/unit/prefix.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,814   copying build/lib.linux-armv7l-3.9/parmed/unit/standard_dimensions.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,816   copying build/lib.linux-armv7l-3.9/parmed/unit/unit_operators.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,819   copying build/lib.linux-armv7l-3.9/parmed/unit/constants.py -> build/bdist.linux-armv7l/wheel/parmed/unit
2021-07-10T11:59:22,821   copying build/lib.linux-armv7l-3.9/parmed/constants.py -> build/bdist.linux-armv7l/wheel/parmed
2021-07-10T11:59:22,824   creating build/bdist.linux-armv7l/wheel/parmed/tinker
2021-07-10T11:59:22,825   copying build/lib.linux-armv7l-3.9/parmed/tinker/tinkerfiles.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2021-07-10T11:59:22,828   copying build/lib.linux-armv7l-3.9/parmed/tinker/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2021-07-10T11:59:22,830   copying build/lib.linux-armv7l-3.9/parmed/tinker/parameterfile.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2021-07-10T11:59:22,834   copying build/lib.linux-armv7l-3.9/parmed/tinker/system.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2021-07-10T11:59:22,836   copying build/lib.linux-armv7l-3.9/parmed/tinker/topologyobjects.py -> build/bdist.linux-armv7l/wheel/parmed/tinker
2021-07-10T11:59:22,840   creating build/bdist.linux-armv7l/wheel/parmed/modeller
2021-07-10T11:59:22,841   copying build/lib.linux-armv7l-3.9/parmed/modeller/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/modeller
2021-07-10T11:59:22,843   copying build/lib.linux-armv7l-3.9/parmed/modeller/residue.py -> build/bdist.linux-armv7l/wheel/parmed/modeller
2021-07-10T11:59:22,847   creating build/bdist.linux-armv7l/wheel/parmed/gromacs
2021-07-10T11:59:22,848   copying build/lib.linux-armv7l-3.9/parmed/gromacs/_gromacsfile.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2021-07-10T11:59:22,850   copying build/lib.linux-armv7l-3.9/parmed/gromacs/gromacsgro.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2021-07-10T11:59:22,853   copying build/lib.linux-armv7l-3.9/parmed/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2021-07-10T11:59:22,855   copying build/lib.linux-armv7l-3.9/parmed/gromacs/_cpp.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2021-07-10T11:59:22,858   copying build/lib.linux-armv7l-3.9/parmed/gromacs/gromacstop.py -> build/bdist.linux-armv7l/wheel/parmed/gromacs
2021-07-10T11:59:22,863   running install_egg_info
2021-07-10T11:59:22,890   running egg_info
2021-07-10T11:59:22,890   creating ParmEd.egg-info
2021-07-10T11:59:22,891   writing ParmEd.egg-info/PKG-INFO
2021-07-10T11:59:22,893   writing dependency_links to ParmEd.egg-info/dependency_links.txt
2021-07-10T11:59:22,895   writing top-level names to ParmEd.egg-info/top_level.txt
2021-07-10T11:59:22,897   writing manifest file 'ParmEd.egg-info/SOURCES.txt'
2021-07-10T11:59:22,942   reading manifest file 'ParmEd.egg-info/SOURCES.txt'
2021-07-10T11:59:22,952   writing manifest file 'ParmEd.egg-info/SOURCES.txt'
2021-07-10T11:59:22,954   Copying ParmEd.egg-info to build/bdist.linux-armv7l/wheel/ParmEd-2.1.10-py3.9.egg-info
2021-07-10T11:59:22,965   running install_scripts
2021-07-10T11:59:22,993   creating build/bdist.linux-armv7l/wheel/ParmEd-2.1.10.data
2021-07-10T11:59:22,993   creating build/bdist.linux-armv7l/wheel/ParmEd-2.1.10.data/scripts
2021-07-10T11:59:22,995   copying build/scripts-3.9/xparmed -> build/bdist.linux-armv7l/wheel/ParmEd-2.1.10.data/scripts
2021-07-10T11:59:22,997   copying build/scripts-3.9/parmed -> build/bdist.linux-armv7l/wheel/ParmEd-2.1.10.data/scripts
2021-07-10T11:59:22,998   changing mode of build/bdist.linux-armv7l/wheel/ParmEd-2.1.10.data/scripts/xparmed to 755
2021-07-10T11:59:22,998   changing mode of build/bdist.linux-armv7l/wheel/ParmEd-2.1.10.data/scripts/parmed to 755
2021-07-10T11:59:23,014   creating build/bdist.linux-armv7l/wheel/ParmEd-2.1.10.dist-info/WHEEL
2021-07-10T11:59:23,017   creating '/tmp/pip-wheel-5ughfz6b/ParmEd-2.1.10-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T11:59:23,020   adding 'ParmEd-2.1.10.data/scripts/parmed'
2021-07-10T11:59:23,021   adding 'ParmEd-2.1.10.data/scripts/xparmed'
2021-07-10T11:59:23,025   adding 'parmed/__init__.py'
2021-07-10T11:59:23,026   adding 'parmed/constants.py'
2021-07-10T11:59:23,027   adding 'parmed/exceptions.py'
2021-07-10T11:59:23,029   adding 'parmed/geometry.py'
2021-07-10T11:59:23,032   adding 'parmed/parameters.py'
2021-07-10T11:59:23,035   adding 'parmed/periodic_table.py'
2021-07-10T11:59:23,037   adding 'parmed/residue.py'
2021-07-10T11:59:23,039   adding 'parmed/scripts.py'
2021-07-10T11:59:23,060   adding 'parmed/structure.py'
2021-07-10T11:59:23,082   adding 'parmed/topologyobjects.py'
2021-07-10T11:59:23,085   adding 'parmed/vec3.py'
2021-07-10T11:59:23,087   adding 'parmed/amber/__init__.py'
2021-07-10T11:59:23,097   adding 'parmed/amber/_amberparm.py'
2021-07-10T11:59:23,102   adding 'parmed/amber/_chamberparm.py'
2021-07-10T11:59:23,276   adding 'parmed/amber/_rdparm.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T11:59:23,289   adding 'parmed/amber/_tinkerparm.py'
2021-07-10T11:59:23,293   adding 'parmed/amber/amberformat.py'
2021-07-10T11:59:23,296   adding 'parmed/amber/asciicrd.py'
2021-07-10T11:59:23,300   adding 'parmed/amber/mask.py'
2021-07-10T11:59:23,303   adding 'parmed/amber/netcdffiles.py'
2021-07-10T11:59:23,306   adding 'parmed/amber/offlib.py'
2021-07-10T11:59:23,309   adding 'parmed/amber/parameters.py'
2021-07-10T11:59:23,311   adding 'parmed/amber/readparm.py'
2021-07-10T11:59:23,315   adding 'parmed/amber/titratable_residues.py'
2021-07-10T11:59:23,317   adding 'parmed/amber/mdin/__init__.py'
2021-07-10T11:59:23,319   adding 'parmed/amber/mdin/cntrl.py'
2021-07-10T11:59:23,320   adding 'parmed/amber/mdin/ewald.py'
2021-07-10T11:59:23,322   adding 'parmed/amber/mdin/mdin.py'
2021-07-10T11:59:23,324   adding 'parmed/amber/mdin/pb.py'
2021-07-10T11:59:23,325   adding 'parmed/amber/mdin/qmmm.py'
2021-07-10T11:59:23,327   adding 'parmed/charmm/__init__.py'
2021-07-10T11:59:23,329   adding 'parmed/charmm/_charmmfile.py'
2021-07-10T11:59:23,331   adding 'parmed/charmm/charmmcrds.py'
2021-07-10T11:59:23,337   adding 'parmed/charmm/parameters.py'
2021-07-10T11:59:23,341   adding 'parmed/charmm/psf.py'
2021-07-10T11:59:23,343   adding 'parmed/formats/__init__.py'
2021-07-10T11:59:23,346   adding 'parmed/formats/mol2.py'
2021-07-10T11:59:23,353   adding 'parmed/formats/pdb.py'
2021-07-10T11:59:23,356   adding 'parmed/formats/pqr.py'
2021-07-10T11:59:23,358   adding 'parmed/formats/psf.py'
2021-07-10T11:59:23,360   adding 'parmed/formats/registry.py'
2021-07-10T11:59:23,364   adding 'parmed/formats/pdbx/PdbxContainers.py'
2021-07-10T11:59:23,366   adding 'parmed/formats/pdbx/PdbxReader.py'
2021-07-10T11:59:23,368   adding 'parmed/formats/pdbx/PdbxWriter.py'
2021-07-10T11:59:23,369   adding 'parmed/formats/pdbx/__init__.py'
2021-07-10T11:59:23,371   adding 'parmed/gromacs/__init__.py'
2021-07-10T11:59:23,374   adding 'parmed/gromacs/_cpp.py'
2021-07-10T11:59:23,375   adding 'parmed/gromacs/_gromacsfile.py'
2021-07-10T11:59:23,377   adding 'parmed/gromacs/gromacsgro.py'
2021-07-10T11:59:23,388   adding 'parmed/gromacs/gromacstop.py'
2021-07-10T11:59:23,390   adding 'parmed/modeller/__init__.py'
2021-07-10T11:59:23,394   adding 'parmed/modeller/residue.py'
2021-07-10T11:59:23,396   adding 'parmed/namd/__init__.py'
2021-07-10T11:59:23,397   adding 'parmed/namd/namdbinfiles.py'
2021-07-10T11:59:23,399   adding 'parmed/openmm/__init__.py'
2021-07-10T11:59:23,403   adding 'parmed/openmm/reporters.py'
2021-07-10T11:59:23,406   adding 'parmed/openmm/topsystem.py'
2021-07-10T11:59:23,408   adding 'parmed/openmm/utils.py'
2021-07-10T11:59:23,410   adding 'parmed/openmm/xmlfile.py'
2021-07-10T11:59:23,412   adding 'parmed/rosetta/__init__.py'
2021-07-10T11:59:23,414   adding 'parmed/rosetta/pose.py'
2021-07-10T11:59:23,417   adding 'parmed/tinker/__init__.py'
2021-07-10T11:59:23,420   adding 'parmed/tinker/parameterfile.py'
2021-07-10T11:59:23,422   adding 'parmed/tinker/system.py'
2021-07-10T11:59:23,424   adding 'parmed/tinker/tinkerfiles.py'
2021-07-10T11:59:23,427   adding 'parmed/tinker/topologyobjects.py'
2021-07-10T11:59:23,429   adding 'parmed/tools/__init__.py'
2021-07-10T11:59:23,451   adding 'parmed/tools/actions.py'
2021-07-10T11:59:23,454   adding 'parmed/tools/add1264.py'
2021-07-10T11:59:23,456   adding 'parmed/tools/addljtype.py'
2021-07-10T11:59:23,457   adding 'parmed/tools/argumentlist.py'
2021-07-10T11:59:23,458   adding 'parmed/tools/arraytools.py'
2021-07-10T11:59:23,460   adding 'parmed/tools/changeradii.py'
2021-07-10T11:59:23,462   adding 'parmed/tools/checkvalidity.py'
2021-07-10T11:59:23,464   adding 'parmed/tools/coarsegrain.py'
2021-07-10T11:59:23,466   adding 'parmed/tools/exceptions.py'
2021-07-10T11:59:23,468   adding 'parmed/tools/logos.py'
2021-07-10T11:59:23,470   adding 'parmed/tools/parmed_cmd.py'
2021-07-10T11:59:23,472   adding 'parmed/tools/parmlist.py'
2021-07-10T11:59:23,474   adding 'parmed/tools/gui/__init__.py'
2021-07-10T11:59:23,478   adding 'parmed/tools/gui/_guiactions.py'
2021-07-10T11:59:23,481   adding 'parmed/tools/gui/_guiwidgets.py'
2021-07-10T11:59:23,482   adding 'parmed/tools/gui/guiactions.py'
2021-07-10T11:59:23,483   adding 'parmed/tools/gui/guifiletools.py'
2021-07-10T11:59:23,485   adding 'parmed/tools/gui/guitools.py'
2021-07-10T11:59:23,487   adding 'parmed/tools/simulations/__init__.py'
2021-07-10T11:59:23,492   adding 'parmed/tools/simulations/openmm.py'
2021-07-10T11:59:23,494   adding 'parmed/tools/simulations/sanderapi.py'
2021-07-10T11:59:23,496   adding 'parmed/unit/__init__.py'
2021-07-10T11:59:23,497   adding 'parmed/unit/basedimension.py'
2021-07-10T11:59:23,499   adding 'parmed/unit/baseunit.py'
2021-07-10T11:59:23,501   adding 'parmed/unit/constants.py'
2021-07-10T11:59:23,503   adding 'parmed/unit/mymatrix.py'
2021-07-10T11:59:23,504   adding 'parmed/unit/prefix.py'
2021-07-10T11:59:23,508   adding 'parmed/unit/quantity.py'
2021-07-10T11:59:23,510   adding 'parmed/unit/standard_dimensions.py'
2021-07-10T11:59:23,513   adding 'parmed/unit/unit.py'
2021-07-10T11:59:23,516   adding 'parmed/unit/unit_definitions.py'
2021-07-10T11:59:23,517   adding 'parmed/unit/unit_math.py'
2021-07-10T11:59:23,519   adding 'parmed/unit/unit_operators.py'
2021-07-10T11:59:23,521   adding 'parmed/utils/__init__.py'
2021-07-10T11:59:23,522   adding 'parmed/utils/decorators.py'
2021-07-10T11:59:23,524   adding 'parmed/utils/io.py'
2021-07-10T11:59:23,529   adding 'parmed/utils/netcdf.py'
2021-07-10T11:59:23,531   adding 'parmed/utils/pandautils.py'
2021-07-10T11:59:23,535   adding 'parmed/utils/six.py'
2021-07-10T11:59:23,537   adding 'parmed/utils/timer.py'
2021-07-10T11:59:23,539   adding 'parmed/utils/fortranformat/FortranRecordReader.py'
2021-07-10T11:59:23,540   adding 'parmed/utils/fortranformat/FortranRecordWriter.py'
2021-07-10T11:59:23,541   adding 'parmed/utils/fortranformat/__init__.py'
2021-07-10T11:59:23,543   adding 'parmed/utils/fortranformat/_edit_descriptors.py'
2021-07-10T11:59:23,544   adding 'parmed/utils/fortranformat/_exceptions.py'
2021-07-10T11:59:23,546   adding 'parmed/utils/fortranformat/_input.py'
2021-07-10T11:59:23,548   adding 'parmed/utils/fortranformat/_lexer.py'
2021-07-10T11:59:23,549   adding 'parmed/utils/fortranformat/_misc.py'
2021-07-10T11:59:23,552   adding 'parmed/utils/fortranformat/_output.py'
2021-07-10T11:59:23,554   adding 'parmed/utils/fortranformat/_parser.py'
2021-07-10T11:59:23,556   adding 'parmed/utils/fortranformat/config.py'
2021-07-10T11:59:23,557   adding 'ParmEd-2.1.10.dist-info/METADATA'
2021-07-10T11:59:23,557   adding 'ParmEd-2.1.10.dist-info/WHEEL'
2021-07-10T11:59:23,558   adding 'ParmEd-2.1.10.dist-info/top_level.txt'
2021-07-10T11:59:23,560   adding 'ParmEd-2.1.10.dist-info/RECORD'
2021-07-10T11:59:23,575   removing build/bdist.linux-armv7l/wheel
2021-07-10T11:59:23,835   Building wheel for parmed (setup.py): finished with status 'done'
2021-07-10T11:59:23,847   Created wheel for parmed: filename=ParmEd-2.1.10-cp39-cp39-linux_armv7l.whl size=807131 sha256=14be7d2a461926bbae33d82c7180c8f99c41c7c0ed0f93289ce6eb2a3c30e4e2
2021-07-10T11:59:23,847   Stored in directory: /tmp/pip-ephem-wheel-cache-7b26wwmr/wheels/a5/be/09/cf15496d7bc887010aa32c21fc934f71ad60de647a5d249112
2021-07-10T11:59:23,859 Successfully built parmed
2021-07-10T11:59:23,892 Removed build tracker: '/tmp/pip-req-tracker-mid_mnkl'