2021-07-10T12:05:59,096 Created temporary directory: /tmp/pip-ephem-wheel-cache-hyw78haj 2021-07-10T12:05:59,099 Created temporary directory: /tmp/pip-req-tracker-ml1z8_2l 2021-07-10T12:05:59,099 Initialized build tracking at /tmp/pip-req-tracker-ml1z8_2l 2021-07-10T12:05:59,099 Created build tracker: /tmp/pip-req-tracker-ml1z8_2l 2021-07-10T12:05:59,099 Entered build tracker: /tmp/pip-req-tracker-ml1z8_2l 2021-07-10T12:05:59,100 Created temporary directory: /tmp/pip-wheel-i60izkq_ 2021-07-10T12:05:59,127 1 location(s) to search for versions of msmtools: 2021-07-10T12:05:59,127 * https://pypi.org/simple/msmtools/ 2021-07-10T12:05:59,128 Fetching project page and analyzing links: https://pypi.org/simple/msmtools/ 2021-07-10T12:05:59,128 Getting page https://pypi.org/simple/msmtools/ 2021-07-10T12:05:59,130 Found index url https://pypi.org/simple 2021-07-10T12:05:59,225 Found link https://files.pythonhosted.org/packages/06/eb/7ea49c965c6d6cc5d49cf7619eb365b9f80f92d449fa2d83286d57c23b09/msmtools-1.0.tar.gz#sha256=cd2cfbb47327eb24d4855b7585868fbbc3be14c824a2eaa3fa0c2a7e76310595 (from https://pypi.org/simple/msmtools/), version: 1.0 2021-07-10T12:05:59,225 Found link https://files.pythonhosted.org/packages/c4/ca/50da8c42c7aad77f9d8f5c5cf1aa0f8812c01b78ea07c4719daca73a90fb/msmtools-1.0.1.tar.gz#sha256=b6704dea0bb816e3aca0be871f15199a18964a799854a000135ffe95a13ea0d6 (from https://pypi.org/simple/msmtools/), version: 1.0.1 2021-07-10T12:05:59,225 Found link https://files.pythonhosted.org/packages/f7/e7/8fad6dccdaf5c35379a3d670c5b17546fcf5e9b2c7feec293dec0e9fc935/msmtools-1.0.2.tar.gz#sha256=f5f9cb4a2b10f7d7f2d5b7cf520703011e6d6f7961a858c5a88b82f0ad2c494a (from https://pypi.org/simple/msmtools/), version: 1.0.2 2021-07-10T12:05:59,226 Found link https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 (from https://pypi.org/simple/msmtools/), version: 1.0.3 2021-07-10T12:05:59,226 Found link https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 (from https://pypi.org/simple/msmtools/), version: 1.0.4 2021-07-10T12:05:59,226 Found link https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 (from https://pypi.org/simple/msmtools/), version: 1.1 2021-07-10T12:05:59,226 Found link https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b (from https://pypi.org/simple/msmtools/), version: 1.1.1 2021-07-10T12:05:59,227 Found link https://files.pythonhosted.org/packages/d8/83/2de718bea8c6ffd64287549e1f443695c9c7eae576e4ec8b695748735bcc/msmtools-1.1.2.tar.gz#sha256=1ae40e839dff551575e38bb8c061073a2f1e69279e53ed62f66c88006a1f0a4f (from https://pypi.org/simple/msmtools/), version: 1.1.2 2021-07-10T12:05:59,227 Found link https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b (from https://pypi.org/simple/msmtools/), version: 1.1.3 2021-07-10T12:05:59,227 Found link https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 (from https://pypi.org/simple/msmtools/), version: 1.1.4 2021-07-10T12:05:59,228 Found link https://files.pythonhosted.org/packages/5e/a2/42d30177e9f8b9071a5cf17c6cd0a75b9b245d708fc626b015599308a898/msmtools-1.2.tar.gz#sha256=eb509f9b2bebd5a07896ec563b14df3ebee2b9871730f5ac87e1ab3179c8c6c4 (from https://pypi.org/simple/msmtools/), version: 1.2 2021-07-10T12:05:59,228 Found link https://files.pythonhosted.org/packages/c5/bb/79aa3617eed8eaea3c2639d172929079b680e1904d4e19b50d35612c5db3/msmtools-1.2.1.tar.gz#sha256=7282cec96360372e8440146dfe27848273bc3d83d18806ea56e3986a14d5bdec (from https://pypi.org/simple/msmtools/), version: 1.2.1 2021-07-10T12:05:59,228 Found link https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 (from https://pypi.org/simple/msmtools/), version: 1.2.2 2021-07-10T12:05:59,228 Found link https://files.pythonhosted.org/packages/53/84/416bd9c21c408ef59953804c1b4ec805950adfd89102c43c54685b6f3cdf/msmtools-1.2.3.tar.gz#sha256=3f3c39a4558887575dd2bfdb0711b6d073446cb0b8767eafda16bfe0b92409c9 (from https://pypi.org/simple/msmtools/), version: 1.2.3 2021-07-10T12:05:59,229 Found link https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b (from https://pypi.org/simple/msmtools/), version: 1.2.4 2021-07-10T12:05:59,229 Found link https://files.pythonhosted.org/packages/9e/95/ac5dfa19f13379490dbef764a994c6d564b32de2d68e712042af8ff84d2a/msmtools-1.2.5.tar.gz#sha256=e07b73ad9e4e8ef8aca82e6b5bb55f57f8400a65fb2fd656b521f72237a7310a (from https://pypi.org/simple/msmtools/), version: 1.2.5 2021-07-10T12:05:59,229 Found link https://files.pythonhosted.org/packages/e4/1f/366f5c37c1231f87b6789f904e4e68ae47b4b910119da9ec5905e9fa1387/msmtools-1.2.6.tar.gz#sha256=2bfa6c02fff9ed9433c90d7ddc7860a8e2cf881fc67ec1ea5ef93f34a7e03541 (from https://pypi.org/simple/msmtools/), version: 1.2.6 2021-07-10T12:05:59,230 Skipping link: not a file: https://pypi.org/simple/msmtools/ 2021-07-10T12:05:59,249 Given no hashes to check 1 links for project 'msmtools': discarding no candidates 2021-07-10T12:05:59,268 Collecting msmtools==1.1.1 2021-07-10T12:05:59,270 Created temporary directory: /tmp/pip-unpack-kjm94tyz 2021-07-10T12:05:59,731 Downloading msmtools-1.1.1.tar.gz (700 kB) 2021-07-10T12:06:00,460 Added msmtools==1.1.1 from https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b to build tracker '/tmp/pip-req-tracker-ml1z8_2l' 2021-07-10T12:06:00,461 Running setup.py (path:/tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/setup.py) egg_info for package msmtools 2021-07-10T12:06:00,462 Created temporary directory: /tmp/pip-pip-egg-info-1yysr9bg 2021-07-10T12:06:00,462 Running command python setup.py egg_info 2021-07-10T12:06:01,388 running egg_info 2021-07-10T12:06:01,391 creating /tmp/pip-pip-egg-info-1yysr9bg/msmtools.egg-info 2021-07-10T12:06:01,392 writing /tmp/pip-pip-egg-info-1yysr9bg/msmtools.egg-info/PKG-INFO 2021-07-10T12:06:01,395 writing dependency_links to /tmp/pip-pip-egg-info-1yysr9bg/msmtools.egg-info/dependency_links.txt 2021-07-10T12:06:01,397 writing requirements to /tmp/pip-pip-egg-info-1yysr9bg/msmtools.egg-info/requires.txt 2021-07-10T12:06:01,596 creating /tmp/hasfunction-p6x72f8c/tmp 2021-07-10T12:06:01,596 creating /tmp/hasfunction-p6x72f8c/tmp/hasfunction-p6x72f8c 2021-07-10T12:06:01,597 cc -c /tmp/hasfunction-p6x72f8c/funcname.c -o /tmp/hasfunction-p6x72f8c/tmp/hasfunction-p6x72f8c/funcname.o 2021-07-10T12:06:01,682 cc /tmp/hasfunction-p6x72f8c/tmp/hasfunction-p6x72f8c/funcname.o -o /tmp/hasfunction-p6x72f8c/a.out 2021-07-10T12:06:01,812 creating /tmp/hasfunction-sk2euq7g/tmp 2021-07-10T12:06:01,812 creating /tmp/hasfunction-sk2euq7g/tmp/hasfunction-sk2euq7g 2021-07-10T12:06:01,813 cc -c /tmp/hasfunction-sk2euq7g/funcname.c -o /tmp/hasfunction-sk2euq7g/tmp/hasfunction-sk2euq7g/funcname.o 2021-07-10T12:06:01,899 cc /tmp/hasfunction-sk2euq7g/tmp/hasfunction-sk2euq7g/funcname.o -lgomp -o /tmp/hasfunction-sk2euq7g/a.out 2021-07-10T12:06:03,031 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/msmtools/estimation/dense/mle_trev.pyx 2021-07-10T12:06:03,032 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T12:06:04,452 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-10T12:06:04,452 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T12:06:05,831 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/msmtools/estimation/dense/sampler_rev.pyx 2021-07-10T12:06:05,832 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T12:06:07,446 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/msmtools/estimation/dense/sampler_revpi.pyx 2021-07-10T12:06:07,446 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T12:06:09,264 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/msmtools/estimation/sparse/mle_trev.pyx 2021-07-10T12:06:09,264 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T12:06:10,643 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-10T12:06:10,644 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T12:06:12,143 Compiling msmtools/estimation/dense/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T12:06:12,144 Compiling msmtools/estimation/sparse/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T12:06:12,144 Compiling msmtools/estimation/dense/mle_trev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T12:06:12,144 Compiling msmtools/estimation/sparse/mle_trev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T12:06:12,144 Compiling msmtools/estimation/dense/sampler_rev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T12:06:12,144 Compiling msmtools/estimation/dense/sampler_revpi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T12:06:12,144 [1/6] Cythonizing msmtools/estimation/dense/mle_trev.pyx 2021-07-10T12:06:12,144 [2/6] Cythonizing msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-10T12:06:12,145 [3/6] Cythonizing msmtools/estimation/dense/sampler_rev.pyx 2021-07-10T12:06:12,145 [4/6] Cythonizing msmtools/estimation/dense/sampler_revpi.pyx 2021-07-10T12:06:12,145 [5/6] Cythonizing msmtools/estimation/sparse/mle_trev.pyx 2021-07-10T12:06:12,145 [6/6] Cythonizing msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-10T12:06:12,145 /tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/setup.py:155: UserWarning: enabled openmp 2021-07-10T12:06:12,145 warnings.warn('enabled openmp') 2021-07-10T12:06:12,146 writing top-level names to /tmp/pip-pip-egg-info-1yysr9bg/msmtools.egg-info/top_level.txt 2021-07-10T12:06:12,146 writing manifest file '/tmp/pip-pip-egg-info-1yysr9bg/msmtools.egg-info/SOURCES.txt' 2021-07-10T12:06:12,185 reading manifest file '/tmp/pip-pip-egg-info-1yysr9bg/msmtools.egg-info/SOURCES.txt' 2021-07-10T12:06:12,187 reading manifest template 'MANIFEST.in' 2021-07-10T12:06:12,303 warning: no files found matching 'tests/data/*' under directory 'msmtools' 2021-07-10T12:06:12,360 warning: no files found matching 'testfiles/' under directory 'msmtools' 2021-07-10T12:06:12,628 adding license file 'LICENSE.txt' 2021-07-10T12:06:12,639 writing manifest file '/tmp/pip-pip-egg-info-1yysr9bg/msmtools.egg-info/SOURCES.txt' 2021-07-10T12:06:12,872 Source in /tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907 has version 1.1.1, which satisfies requirement msmtools==1.1.1 from https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b 2021-07-10T12:06:12,873 Removed msmtools==1.1.1 from https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b from build tracker '/tmp/pip-req-tracker-ml1z8_2l' 2021-07-10T12:06:12,878 Created temporary directory: /tmp/pip-unpack-vpnmcvh2 2021-07-10T12:06:12,878 Building wheels for collected packages: msmtools 2021-07-10T12:06:12,882 Created temporary directory: /tmp/pip-wheel-x0agjd3z 2021-07-10T12:06:12,883 Building wheel for msmtools (setup.py): started 2021-07-10T12:06:12,883 Destination directory: /tmp/pip-wheel-x0agjd3z 2021-07-10T12:06:12,883 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-x0agjd3z 2021-07-10T12:06:13,805 running bdist_wheel 2021-07-10T12:06:13,996 creating /tmp/hasfunction-lnlwfwb4/tmp 2021-07-10T12:06:13,996 creating /tmp/hasfunction-lnlwfwb4/tmp/hasfunction-lnlwfwb4 2021-07-10T12:06:13,997 cc -c /tmp/hasfunction-lnlwfwb4/funcname.c -o /tmp/hasfunction-lnlwfwb4/tmp/hasfunction-lnlwfwb4/funcname.o 2021-07-10T12:06:14,080 cc /tmp/hasfunction-lnlwfwb4/tmp/hasfunction-lnlwfwb4/funcname.o -o /tmp/hasfunction-lnlwfwb4/a.out 2021-07-10T12:06:14,196 creating /tmp/hasfunction-qyf_sqqj/tmp 2021-07-10T12:06:14,196 creating /tmp/hasfunction-qyf_sqqj/tmp/hasfunction-qyf_sqqj 2021-07-10T12:06:14,197 cc -c /tmp/hasfunction-qyf_sqqj/funcname.c -o /tmp/hasfunction-qyf_sqqj/tmp/hasfunction-qyf_sqqj/funcname.o 2021-07-10T12:06:14,284 cc /tmp/hasfunction-qyf_sqqj/tmp/hasfunction-qyf_sqqj/funcname.o -lgomp -o /tmp/hasfunction-qyf_sqqj/a.out 2021-07-10T12:06:15,209 /tmp/pip-wheel-i60izkq_/msmtools_2699cc8cc6e4455caf80a615cca7d907/setup.py:155: UserWarning: enabled openmp 2021-07-10T12:06:15,209 warnings.warn('enabled openmp') 2021-07-10T12:06:15,212 running build 2021-07-10T12:06:15,212 running build_py 2021-07-10T12:06:15,221 creating build 2021-07-10T12:06:15,221 creating build/lib.linux-armv7l-3.9 2021-07-10T12:06:15,222 creating build/lib.linux-armv7l-3.9/msmtools 2021-07-10T12:06:15,223 copying msmtools/__init__.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-10T12:06:15,225 copying msmtools/_version.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-10T12:06:15,227 creating build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-10T12:06:15,228 copying msmtools/estimation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-10T12:06:15,230 copying msmtools/estimation/api.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-10T12:06:15,234 creating build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-10T12:06:15,235 copying msmtools/flux/reactive_flux.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-10T12:06:15,237 copying msmtools/flux/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-10T12:06:15,239 copying msmtools/flux/api.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-10T12:06:15,242 copying msmtools/flux/reactive_flux_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-10T12:06:15,244 creating build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-10T12:06:15,245 copying msmtools/dtraj/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-10T12:06:15,247 copying msmtools/dtraj/api.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-10T12:06:15,251 creating build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-10T12:06:15,252 copying msmtools/generation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-10T12:06:15,254 copying msmtools/generation/api.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-10T12:06:15,257 creating build/lib.linux-armv7l-3.9/msmtools/util 2021-07-10T12:06:15,258 copying msmtools/util/annotators.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-10T12:06:15,261 copying msmtools/util/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-10T12:06:15,263 copying msmtools/util/types.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-10T12:06:15,265 copying msmtools/util/statistics.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-10T12:06:15,268 copying msmtools/util/numeric.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-10T12:06:15,270 copying msmtools/util/exceptions.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-10T12:06:15,273 creating build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-10T12:06:15,274 copying msmtools/analysis/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-10T12:06:15,276 copying msmtools/analysis/api.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-10T12:06:15,280 creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,281 copying msmtools/estimation/dense/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,284 copying msmtools/estimation/dense/bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,286 copying msmtools/estimation/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,288 copying msmtools/estimation/dense/covariance.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,291 copying msmtools/estimation/dense/tmatrix_sampler.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,293 copying msmtools/estimation/dense/covariance_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,295 copying msmtools/estimation/dense/sampler_nrev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,297 copying msmtools/estimation/dense/tmatrix_sampler_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,300 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,301 copying msmtools/estimation/sparse/connectivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,303 copying msmtools/estimation/sparse/likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,305 copying msmtools/estimation/sparse/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,307 copying msmtools/estimation/sparse/prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,309 copying msmtools/estimation/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,311 copying msmtools/estimation/sparse/count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,313 copying msmtools/estimation/sparse/connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,316 copying msmtools/estimation/sparse/count_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,318 copying msmtools/estimation/sparse/transition_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,320 copying msmtools/estimation/sparse/effective_counts.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,323 copying msmtools/estimation/sparse/likelihood_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,325 copying msmtools/estimation/sparse/prior_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:15,327 creating build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-10T12:06:15,328 copying msmtools/flux/dense/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-10T12:06:15,331 copying msmtools/flux/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-10T12:06:15,332 copying msmtools/flux/dense/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-10T12:06:15,336 creating build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-10T12:06:15,336 copying msmtools/flux/sparse/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-10T12:06:15,339 copying msmtools/flux/sparse/pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-10T12:06:15,341 copying msmtools/flux/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-10T12:06:15,343 copying msmtools/flux/sparse/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-10T12:06:15,345 copying msmtools/flux/sparse/pathways_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-10T12:06:15,348 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-10T12:06:15,349 copying msmtools/util/matrix/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-10T12:06:15,351 copying msmtools/util/matrix/matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-10T12:06:15,353 copying msmtools/util/matrix/matrix.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-10T12:06:15,358 creating build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,358 copying msmtools/analysis/dense/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,361 copying msmtools/analysis/dense/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,364 copying msmtools/analysis/dense/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,366 copying msmtools/analysis/dense/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,368 copying msmtools/analysis/dense/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,371 copying msmtools/analysis/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,374 copying msmtools/analysis/dense/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,376 copying msmtools/analysis/dense/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,378 copying msmtools/analysis/dense/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,380 copying msmtools/analysis/dense/correlations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,382 copying msmtools/analysis/dense/sensitivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,385 copying msmtools/analysis/dense/hitting_probability_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,387 copying msmtools/analysis/dense/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,389 copying msmtools/analysis/dense/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,391 copying msmtools/analysis/dense/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,392 copying msmtools/analysis/dense/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,395 copying msmtools/analysis/dense/hitting_probability.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,397 copying msmtools/analysis/dense/pcca_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,399 copying msmtools/analysis/dense/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,401 copying msmtools/analysis/dense/sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,403 copying msmtools/analysis/dense/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,406 copying msmtools/analysis/dense/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,408 copying msmtools/analysis/dense/pcca.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,411 copying msmtools/analysis/dense/correlations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-10T12:06:15,414 creating build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,415 copying msmtools/analysis/sparse/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,418 copying msmtools/analysis/sparse/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,420 copying msmtools/analysis/sparse/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,423 copying msmtools/analysis/sparse/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,425 copying msmtools/analysis/sparse/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,427 copying msmtools/analysis/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,429 copying msmtools/analysis/sparse/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,431 copying msmtools/analysis/sparse/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,433 copying msmtools/analysis/sparse/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,436 copying msmtools/analysis/sparse/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,438 copying msmtools/analysis/sparse/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,440 copying msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,442 copying msmtools/analysis/sparse/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,444 copying msmtools/analysis/sparse/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,446 copying msmtools/analysis/sparse/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,448 copying msmtools/analysis/sparse/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-10T12:06:15,451 creating build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,451 copying msmtools/analysis/tests/P_rev_251x251.dat -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,492 copying msmtools/analysis/tests/test_sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,495 copying msmtools/analysis/tests/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,497 copying msmtools/analysis/tests/test_committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,499 copying msmtools/analysis/tests/test_assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,501 copying msmtools/analysis/tests/test_fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,504 copying msmtools/analysis/tests/test_expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,506 copying msmtools/analysis/tests/test_mfpt.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,508 copying msmtools/analysis/tests/test_decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-10T12:06:15,512 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:15,513 copying msmtools/estimation/sparse/testfiles/dtraj.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:15,517 copying msmtools/estimation/sparse/testfiles/C_7_lag.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:15,519 copying msmtools/estimation/sparse/testfiles/C_1_sliding.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:15,521 copying msmtools/estimation/sparse/testfiles/C_13_lag.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:15,524 copying msmtools/estimation/sparse/testfiles/C_1_lag.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:15,526 copying msmtools/estimation/sparse/testfiles/C_7_sliding.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:15,528 copying msmtools/estimation/sparse/testfiles/C_13_sliding.dat -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:15,530 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,532 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,534 copying msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,536 copying msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,539 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,541 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,543 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,546 copying msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,548 copying msmtools/util/matrix/testfiles/matrix_float.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,550 copying msmtools/util/matrix/testfiles/matrix_complex.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,552 copying msmtools/util/matrix/testfiles/matrix_float.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,554 copying msmtools/util/matrix/testfiles/matrix_complex.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,556 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,558 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,560 copying msmtools/util/matrix/testfiles/matrix_int.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,563 copying msmtools/util/matrix/testfiles/matrix_int.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-10T12:06:15,577 running build_ext 2021-07-10T12:06:15,582 building 'msmtools.estimation.dense.mle_trev_given_pi' extension 2021-07-10T12:06:15,583 creating build/temp.linux-armv7l-3.9 2021-07-10T12:06:15,583 creating build/temp.linux-armv7l-3.9/msmtools 2021-07-10T12:06:15,584 creating build/temp.linux-armv7l-3.9/msmtools/estimation 2021-07-10T12:06:15,585 creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-10T12:06:15,586 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o -fopenmp 2021-07-10T12:06:15,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -fopenmp 2021-07-10T12:06:16,372 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T12:06:16,373 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T12:06:16,373 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T12:06:16,373 from msmtools/estimation/dense/mle_trev_given_pi.c:638: 2021-07-10T12:06:16,373 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T12:06:16,373 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T12:06:16,373 | ^~~~~~~ 2021-07-10T12:06:19,358 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-10T12:06:19,499 building 'msmtools.estimation.sparse.mle_trev_given_pi' extension 2021-07-10T12:06:19,500 creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-10T12:06:19,501 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o -fopenmp 2021-07-10T12:06:19,872 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -fopenmp 2021-07-10T12:06:20,487 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T12:06:20,487 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T12:06:20,487 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T12:06:20,488 from msmtools/estimation/sparse/mle_trev_given_pi.c:639: 2021-07-10T12:06:20,488 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T12:06:20,488 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T12:06:20,488 | ^~~~~~~ 2021-07-10T12:06:24,836 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-10T12:06:24,976 building 'msmtools.estimation.dense.mle_trev' extension 2021-07-10T12:06:24,977 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o -fopenmp 2021-07-10T12:06:25,128 msmtools/estimation/dense/_mle_trev.c: In function ‘_mle_trev_dense’: 2021-07-10T12:06:25,129 msmtools/estimation/dense/_mle_trev.c:62:27: warning: unused variable ‘value’ [-Wunused-variable] 2021-07-10T12:06:25,129 62 | double rel_err, x_norm, value; 2021-07-10T12:06:25,129 | ^~~~~ 2021-07-10T12:06:25,349 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -fopenmp 2021-07-10T12:06:25,735 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T12:06:25,735 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T12:06:25,736 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T12:06:25,736 from msmtools/estimation/dense/mle_trev.c:638: 2021-07-10T12:06:25,736 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T12:06:25,736 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T12:06:25,736 | ^~~~~~~ 2021-07-10T12:06:29,408 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-10T12:06:29,539 building 'msmtools.estimation.sparse.mle_trev' extension 2021-07-10T12:06:29,540 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o -fopenmp 2021-07-10T12:06:29,925 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -fopenmp 2021-07-10T12:06:30,310 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T12:06:30,310 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T12:06:30,310 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T12:06:30,311 from msmtools/estimation/sparse/mle_trev.c:638: 2021-07-10T12:06:30,311 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T12:06:30,311 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T12:06:30,311 | ^~~~~~~ 2021-07-10T12:06:34,553 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-10T12:06:34,685 building 'msmtools.estimation.dense.sampler_rev' extension 2021-07-10T12:06:34,686 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp 2021-07-10T12:06:34,846 msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’: 2021-07-10T12:06:34,846 msmtools/estimation/dense/_ranlib.c:1567:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-10T12:06:34,846 1567 | int m; 2021-07-10T12:06:34,847 | ^ 2021-07-10T12:06:36,310 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp 2021-07-10T12:06:36,426 msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’: 2021-07-10T12:06:36,427 msmtools/estimation/dense/_rnglib.c:467:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-10T12:06:36,427 467 | int j; 2021-07-10T12:06:36,427 | ^ 2021-07-10T12:06:36,433 msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’: 2021-07-10T12:06:36,434 msmtools/estimation/dense/_rnglib.c:1628:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-10T12:06:36,434 1628 | int i; 2021-07-10T12:06:36,434 | ^ 2021-07-10T12:06:36,434 msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’: 2021-07-10T12:06:36,435 msmtools/estimation/dense/_rnglib.c:1727:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-10T12:06:36,435 1727 | int i; 2021-07-10T12:06:36,435 | ^ 2021-07-10T12:06:36,955 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o -fopenmp 2021-07-10T12:06:37,561 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -fopenmp 2021-07-10T12:06:37,950 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T12:06:37,950 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T12:06:37,950 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T12:06:37,950 from msmtools/estimation/dense/sampler_rev.c:640: 2021-07-10T12:06:37,950 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T12:06:37,951 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T12:06:37,951 | ^~~~~~~ 2021-07-10T12:06:46,040 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-10T12:06:46,217 building 'msmtools.estimation.dense.sampler_revpi' extension 2021-07-10T12:06:46,218 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp 2021-07-10T12:06:46,388 msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’: 2021-07-10T12:06:46,388 msmtools/estimation/dense/_ranlib.c:1567:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-10T12:06:46,388 1567 | int m; 2021-07-10T12:06:46,389 | ^ 2021-07-10T12:06:47,855 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp 2021-07-10T12:06:47,970 msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’: 2021-07-10T12:06:47,970 msmtools/estimation/dense/_rnglib.c:467:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-10T12:06:47,971 467 | int j; 2021-07-10T12:06:47,971 | ^ 2021-07-10T12:06:47,978 msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’: 2021-07-10T12:06:47,979 msmtools/estimation/dense/_rnglib.c:1628:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-10T12:06:47,979 1628 | int i; 2021-07-10T12:06:47,979 | ^ 2021-07-10T12:06:47,980 msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’: 2021-07-10T12:06:47,981 msmtools/estimation/dense/_rnglib.c:1727:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-10T12:06:47,981 1727 | int i; 2021-07-10T12:06:47,981 | ^ 2021-07-10T12:06:48,545 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o -fopenmp 2021-07-10T12:06:48,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -fopenmp 2021-07-10T12:06:49,386 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T12:06:49,387 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T12:06:49,387 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T12:06:49,387 from msmtools/estimation/dense/sampler_revpi.c:640: 2021-07-10T12:06:49,387 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T12:06:49,387 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T12:06:49,387 | ^~~~~~~ 2021-07-10T12:06:58,873 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-10T12:06:59,059 installing to build/bdist.linux-armv7l/wheel 2021-07-10T12:06:59,059 running install 2021-07-10T12:06:59,061 running install_lib 2021-07-10T12:06:59,066 creating build/bdist.linux-armv7l 2021-07-10T12:06:59,067 creating build/bdist.linux-armv7l/wheel 2021-07-10T12:06:59,069 creating build/bdist.linux-armv7l/wheel/msmtools 2021-07-10T12:06:59,071 copying build/lib.linux-armv7l-3.9/msmtools/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-10T12:06:59,077 creating build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-10T12:06:59,081 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,084 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,099 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,102 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,105 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,108 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,110 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,112 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,125 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,144 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,146 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,165 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_nrev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,167 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-10T12:06:59,169 copying build/lib.linux-armv7l-3.9/msmtools/estimation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-10T12:06:59,172 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,173 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,176 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,178 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,187 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,189 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,191 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,193 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,196 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,199 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,208 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,211 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,214 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/effective_counts.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,217 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,219 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-10T12:06:59,222 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:59,223 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles/dtraj.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:59,227 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles/C_7_lag.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:59,229 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles/C_1_sliding.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:59,231 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles/C_13_lag.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:59,234 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles/C_1_lag.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:59,236 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles/C_7_sliding.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:59,238 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/testfiles/C_13_sliding.dat -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse/testfiles 2021-07-10T12:06:59,241 copying build/lib.linux-armv7l-3.9/msmtools/estimation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-10T12:06:59,245 copying build/lib.linux-armv7l-3.9/msmtools/_version.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-10T12:06:59,248 creating build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-10T12:06:59,249 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-10T12:06:59,252 creating build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-10T12:06:59,254 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-10T12:06:59,257 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-10T12:06:59,259 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-10T12:06:59,262 copying build/lib.linux-armv7l-3.9/msmtools/flux/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-10T12:06:59,266 creating build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-10T12:06:59,267 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-10T12:06:59,271 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-10T12:06:59,274 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-10T12:06:59,277 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-10T12:06:59,281 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-10T12:06:59,285 copying build/lib.linux-armv7l-3.9/msmtools/flux/api.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-10T12:06:59,288 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-10T12:06:59,292 creating build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-10T12:06:59,294 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-10T12:06:59,297 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/api.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-10T12:06:59,301 creating build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-10T12:06:59,302 copying build/lib.linux-armv7l-3.9/msmtools/generation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-10T12:06:59,305 copying build/lib.linux-armv7l-3.9/msmtools/generation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-10T12:06:59,309 creating build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-10T12:06:59,311 copying build/lib.linux-armv7l-3.9/msmtools/util/annotators.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-10T12:06:59,314 copying build/lib.linux-armv7l-3.9/msmtools/util/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-10T12:06:59,318 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-10T12:06:59,319 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-10T12:06:59,321 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-10T12:06:59,325 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-10T12:06:59,329 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,330 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,333 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,336 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,339 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,341 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,344 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,347 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,349 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,351 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,354 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,356 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,359 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,362 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,364 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,367 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-10T12:06:59,369 copying build/lib.linux-armv7l-3.9/msmtools/util/types.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-10T12:06:59,373 copying build/lib.linux-armv7l-3.9/msmtools/util/statistics.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-10T12:06:59,378 copying build/lib.linux-armv7l-3.9/msmtools/util/numeric.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-10T12:06:59,380 copying build/lib.linux-armv7l-3.9/msmtools/util/exceptions.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-10T12:06:59,384 creating build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-10T12:06:59,386 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,388 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,391 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,395 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,399 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,402 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,406 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,408 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,411 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,414 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,417 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,421 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,424 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,426 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,429 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,432 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,435 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,438 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,441 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,444 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,447 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,450 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,454 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,676 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,682 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-10T12:06:59,688 copying build/lib.linux-armv7l-3.9/msmtools/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-10T12:06:59,908 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,912 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,956 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,962 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,968 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,972 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,976 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,980 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,986 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,990 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,995 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:06:59,998 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:07:00,001 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:07:00,003 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:07:00,007 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:07:00,010 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:07:00,013 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-10T12:07:00,016 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,017 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/P_rev_251x251.dat -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,082 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,085 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,087 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,090 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,093 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,096 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,099 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_mfpt.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,102 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-10T12:07:00,106 copying build/lib.linux-armv7l-3.9/msmtools/analysis/api.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-10T12:07:00,110 running install_egg_info 2021-07-10T12:07:00,136 running egg_info 2021-07-10T12:07:00,137 writing msmtools.egg-info/PKG-INFO 2021-07-10T12:07:00,139 writing dependency_links to msmtools.egg-info/dependency_links.txt 2021-07-10T12:07:00,140 writing requirements to msmtools.egg-info/requires.txt 2021-07-10T12:07:00,141 writing top-level names to msmtools.egg-info/top_level.txt 2021-07-10T12:07:00,189 reading manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-10T12:07:00,208 reading manifest template 'MANIFEST.in' 2021-07-10T12:07:00,559 warning: no files found matching 'tests/data/*' under directory 'msmtools' 2021-07-10T12:07:00,842 warning: no files found matching 'testfiles/' under directory 'msmtools' 2021-07-10T12:07:01,418 adding license file 'LICENSE.txt' 2021-07-10T12:07:01,434 writing manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-10T12:07:01,436 Copying msmtools.egg-info to build/bdist.linux-armv7l/wheel/msmtools-1.1.1-py3.9.egg-info 2021-07-10T12:07:01,458 running install_scripts 2021-07-10T12:07:01,509 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-10T12:07:01,516 creating build/bdist.linux-armv7l/wheel/msmtools-1.1.1.dist-info/WHEEL 2021-07-10T12:07:01,519 creating '/tmp/pip-wheel-x0agjd3z/msmtools-1.1.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T12:07:01,522 adding 'msmtools/__init__.py' 2021-07-10T12:07:01,524 adding 'msmtools/_version.py' 2021-07-10T12:07:01,526 adding 'msmtools/analysis/__init__.py' 2021-07-10T12:07:01,534 adding 'msmtools/analysis/api.py' 2021-07-10T12:07:01,537 adding 'msmtools/analysis/dense/__init__.py' 2021-07-10T12:07:01,538 adding 'msmtools/analysis/dense/assessment.py' 2021-07-10T12:07:01,540 adding 'msmtools/analysis/dense/assessment_test.py' 2021-07-10T12:07:01,541 adding 'msmtools/analysis/dense/birth_death_chain.py' 2021-07-10T12:07:01,543 adding 'msmtools/analysis/dense/committor.py' 2021-07-10T12:07:01,545 adding 'msmtools/analysis/dense/committor_test.py' 2021-07-10T12:07:01,547 adding 'msmtools/analysis/dense/correlations.py' 2021-07-10T12:07:01,549 adding 'msmtools/analysis/dense/correlations_test.py' 2021-07-10T12:07:01,551 adding 'msmtools/analysis/dense/decomposition.py' 2021-07-10T12:07:01,553 adding 'msmtools/analysis/dense/decomposition_test.py' 2021-07-10T12:07:01,555 adding 'msmtools/analysis/dense/expectations.py' 2021-07-10T12:07:01,557 adding 'msmtools/analysis/dense/expectations_test.py' 2021-07-10T12:07:01,559 adding 'msmtools/analysis/dense/fingerprints.py' 2021-07-10T12:07:01,561 adding 'msmtools/analysis/dense/fingerprints_test.py' 2021-07-10T12:07:01,562 adding 'msmtools/analysis/dense/hitting_probability.py' 2021-07-10T12:07:01,564 adding 'msmtools/analysis/dense/hitting_probability_test.py' 2021-07-10T12:07:01,565 adding 'msmtools/analysis/dense/mean_first_passage_time.py' 2021-07-10T12:07:01,567 adding 'msmtools/analysis/dense/mean_first_passage_time_test.py' 2021-07-10T12:07:01,570 adding 'msmtools/analysis/dense/pcca.py' 2021-07-10T12:07:01,572 adding 'msmtools/analysis/dense/pcca_test.py' 2021-07-10T12:07:01,574 adding 'msmtools/analysis/dense/sensitivity.py' 2021-07-10T12:07:01,576 adding 'msmtools/analysis/dense/sensitivity_test.py' 2021-07-10T12:07:01,577 adding 'msmtools/analysis/dense/stationary_vector.py' 2021-07-10T12:07:01,579 adding 'msmtools/analysis/dense/stationary_vector_test.py' 2021-07-10T12:07:01,581 adding 'msmtools/analysis/sparse/__init__.py' 2021-07-10T12:07:01,582 adding 'msmtools/analysis/sparse/assessment.py' 2021-07-10T12:07:01,584 adding 'msmtools/analysis/sparse/assessment_test.py' 2021-07-10T12:07:01,586 adding 'msmtools/analysis/sparse/birth_death_chain.py' 2021-07-10T12:07:01,588 adding 'msmtools/analysis/sparse/committor.py' 2021-07-10T12:07:01,590 adding 'msmtools/analysis/sparse/committor_test.py' 2021-07-10T12:07:01,592 adding 'msmtools/analysis/sparse/decomposition.py' 2021-07-10T12:07:01,594 adding 'msmtools/analysis/sparse/decomposition_test.py' 2021-07-10T12:07:01,596 adding 'msmtools/analysis/sparse/expectations.py' 2021-07-10T12:07:01,598 adding 'msmtools/analysis/sparse/expectations_test.py' 2021-07-10T12:07:01,601 adding 'msmtools/analysis/sparse/fingerprints.py' 2021-07-10T12:07:01,602 adding 'msmtools/analysis/sparse/fingerprints_test.py' 2021-07-10T12:07:01,604 adding 'msmtools/analysis/sparse/mean_first_passage_time.py' 2021-07-10T12:07:01,606 adding 'msmtools/analysis/sparse/mean_first_passage_time_test.py' 2021-07-10T12:07:01,607 adding 'msmtools/analysis/sparse/stationary_vector.py' 2021-07-10T12:07:01,609 adding 'msmtools/analysis/sparse/stationary_vector_test.py' 2021-07-10T12:07:01,693 adding 'msmtools/analysis/tests/P_rev_251x251.dat' 2021-07-10T12:07:01,707 adding 'msmtools/analysis/tests/birth_death_chain.py' 2021-07-10T12:07:01,709 adding 'msmtools/analysis/tests/test_assessment.py' 2021-07-10T12:07:01,711 adding 'msmtools/analysis/tests/test_committor.py' 2021-07-10T12:07:01,713 adding 'msmtools/analysis/tests/test_decomposition.py' 2021-07-10T12:07:01,715 adding 'msmtools/analysis/tests/test_expectations.py' 2021-07-10T12:07:01,717 adding 'msmtools/analysis/tests/test_fingerprints.py' 2021-07-10T12:07:01,719 adding 'msmtools/analysis/tests/test_mfpt.py' 2021-07-10T12:07:01,724 adding 'msmtools/analysis/tests/test_sensitivity.py' 2021-07-10T12:07:01,726 adding 'msmtools/dtraj/__init__.py' 2021-07-10T12:07:01,728 adding 'msmtools/dtraj/api.py' 2021-07-10T12:07:01,730 adding 'msmtools/estimation/__init__.py' 2021-07-10T12:07:01,736 adding 'msmtools/estimation/api.py' 2021-07-10T12:07:01,739 adding 'msmtools/estimation/dense/__init__.py' 2021-07-10T12:07:01,740 adding 'msmtools/estimation/dense/bootstrapping.py' 2021-07-10T12:07:01,742 adding 'msmtools/estimation/dense/covariance.py' 2021-07-10T12:07:01,744 adding 'msmtools/estimation/dense/covariance_test.py' 2021-07-10T12:07:01,800 adding 'msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T12:07:01,847 adding 'msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T12:07:01,850 adding 'msmtools/estimation/dense/sampler_nrev.py' 2021-07-10T12:07:02,002 adding 'msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T12:07:02,162 adding 'msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T12:07:02,169 adding 'msmtools/estimation/dense/tmatrix_sampler.py' 2021-07-10T12:07:02,171 adding 'msmtools/estimation/dense/tmatrix_sampler_test.py' 2021-07-10T12:07:02,173 adding 'msmtools/estimation/dense/transition_matrix.py' 2021-07-10T12:07:02,175 adding 'msmtools/estimation/sparse/__init__.py' 2021-07-10T12:07:02,176 adding 'msmtools/estimation/sparse/connectivity.py' 2021-07-10T12:07:02,178 adding 'msmtools/estimation/sparse/connectivity_test.py' 2021-07-10T12:07:02,180 adding 'msmtools/estimation/sparse/count_matrix.py' 2021-07-10T12:07:02,182 adding 'msmtools/estimation/sparse/count_matrix_test.py' 2021-07-10T12:07:02,184 adding 'msmtools/estimation/sparse/effective_counts.py' 2021-07-10T12:07:02,185 adding 'msmtools/estimation/sparse/likelihood.py' 2021-07-10T12:07:02,186 adding 'msmtools/estimation/sparse/likelihood_test.py' 2021-07-10T12:07:02,247 adding 'msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T12:07:02,306 adding 'msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T12:07:02,310 adding 'msmtools/estimation/sparse/prior.py' 2021-07-10T12:07:02,311 adding 'msmtools/estimation/sparse/prior_test.py' 2021-07-10T12:07:02,312 adding 'msmtools/estimation/sparse/transition_matrix.py' 2021-07-10T12:07:02,314 adding 'msmtools/estimation/sparse/transition_matrix_test.py' 2021-07-10T12:07:02,316 adding 'msmtools/estimation/sparse/testfiles/C_13_lag.dat' 2021-07-10T12:07:02,317 adding 'msmtools/estimation/sparse/testfiles/C_13_sliding.dat' 2021-07-10T12:07:02,318 adding 'msmtools/estimation/sparse/testfiles/C_1_lag.dat' 2021-07-10T12:07:02,320 adding 'msmtools/estimation/sparse/testfiles/C_1_sliding.dat' 2021-07-10T12:07:02,321 adding 'msmtools/estimation/sparse/testfiles/C_7_lag.dat' 2021-07-10T12:07:02,322 adding 'msmtools/estimation/sparse/testfiles/C_7_sliding.dat' 2021-07-10T12:07:02,333 adding 'msmtools/estimation/sparse/testfiles/dtraj.dat' 2021-07-10T12:07:02,335 adding 'msmtools/flux/__init__.py' 2021-07-10T12:07:02,338 adding 'msmtools/flux/api.py' 2021-07-10T12:07:02,340 adding 'msmtools/flux/reactive_flux.py' 2021-07-10T12:07:02,342 adding 'msmtools/flux/reactive_flux_test.py' 2021-07-10T12:07:02,344 adding 'msmtools/flux/dense/__init__.py' 2021-07-10T12:07:02,345 adding 'msmtools/flux/dense/tpt.py' 2021-07-10T12:07:02,347 adding 'msmtools/flux/dense/tpt_test.py' 2021-07-10T12:07:02,349 adding 'msmtools/flux/sparse/__init__.py' 2021-07-10T12:07:02,351 adding 'msmtools/flux/sparse/pathways.py' 2021-07-10T12:07:02,352 adding 'msmtools/flux/sparse/pathways_test.py' 2021-07-10T12:07:02,354 adding 'msmtools/flux/sparse/tpt.py' 2021-07-10T12:07:02,356 adding 'msmtools/flux/sparse/tpt_test.py' 2021-07-10T12:07:02,358 adding 'msmtools/generation/__init__.py' 2021-07-10T12:07:02,360 adding 'msmtools/generation/api.py' 2021-07-10T12:07:02,362 adding 'msmtools/util/__init__.py' 2021-07-10T12:07:02,364 adding 'msmtools/util/annotators.py' 2021-07-10T12:07:02,365 adding 'msmtools/util/exceptions.py' 2021-07-10T12:07:02,367 adding 'msmtools/util/numeric.py' 2021-07-10T12:07:02,368 adding 'msmtools/util/statistics.py' 2021-07-10T12:07:02,371 adding 'msmtools/util/types.py' 2021-07-10T12:07:02,373 adding 'msmtools/util/matrix/__init__.py' 2021-07-10T12:07:02,375 adding 'msmtools/util/matrix/matrix.py' 2021-07-10T12:07:02,377 adding 'msmtools/util/matrix/matrix_test.py' 2021-07-10T12:07:02,379 adding 'msmtools/util/matrix/testfiles/matrix_complex.dat' 2021-07-10T12:07:02,380 adding 'msmtools/util/matrix/testfiles/matrix_complex.npy' 2021-07-10T12:07:02,381 adding 'msmtools/util/matrix/testfiles/matrix_float.dat' 2021-07-10T12:07:02,383 adding 'msmtools/util/matrix/testfiles/matrix_float.npy' 2021-07-10T12:07:02,384 adding 'msmtools/util/matrix/testfiles/matrix_int.dat' 2021-07-10T12:07:02,385 adding 'msmtools/util/matrix/testfiles/matrix_int.npy' 2021-07-10T12:07:02,386 adding 'msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat' 2021-07-10T12:07:02,387 adding 'msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy' 2021-07-10T12:07:02,389 adding 'msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat' 2021-07-10T12:07:02,390 adding 'msmtools/util/matrix/testfiles/spmatrix_float.coo.dat' 2021-07-10T12:07:02,391 adding 'msmtools/util/matrix/testfiles/spmatrix_float.coo.npy' 2021-07-10T12:07:02,392 adding 'msmtools/util/matrix/testfiles/spmatrix_float_reference.dat' 2021-07-10T12:07:02,394 adding 'msmtools/util/matrix/testfiles/spmatrix_int.coo.dat' 2021-07-10T12:07:02,395 adding 'msmtools/util/matrix/testfiles/spmatrix_int.coo.npy' 2021-07-10T12:07:02,396 adding 'msmtools/util/matrix/testfiles/spmatrix_int_reference.dat' 2021-07-10T12:07:02,399 adding 'msmtools-1.1.1.dist-info/LICENSE.txt' 2021-07-10T12:07:02,401 adding 'msmtools-1.1.1.dist-info/METADATA' 2021-07-10T12:07:02,402 adding 'msmtools-1.1.1.dist-info/WHEEL' 2021-07-10T12:07:02,402 adding 'msmtools-1.1.1.dist-info/pbr.json' 2021-07-10T12:07:02,404 adding 'msmtools-1.1.1.dist-info/top_level.txt' 2021-07-10T12:07:02,406 adding 'msmtools-1.1.1.dist-info/RECORD' 2021-07-10T12:07:02,433 removing build/bdist.linux-armv7l/wheel 2021-07-10T12:07:02,630 Building wheel for msmtools (setup.py): finished with status 'done' 2021-07-10T12:07:02,657 Created wheel for msmtools: filename=msmtools-1.1.1-cp39-cp39-linux_armv7l.whl size=1348086 sha256=8442c1d00eee62ac169461cdc9c94f3256942fce39b8cbe721ccaea91bc276b5 2021-07-10T12:07:02,657 Stored in directory: /tmp/pip-ephem-wheel-cache-hyw78haj/wheels/dd/24/45/c10611e931ace38135a1d05ccbba1a3bc02fecf5907c92dc21 2021-07-10T12:07:02,672 Successfully built msmtools 2021-07-10T12:07:02,732 Removed build tracker: '/tmp/pip-req-tracker-ml1z8_2l'