2021-07-10T12:49:30,644 Created temporary directory: /tmp/pip-ephem-wheel-cache-63y774sq
2021-07-10T12:49:30,647 Created temporary directory: /tmp/pip-req-tracker-sv887ta5
2021-07-10T12:49:30,647 Initialized build tracking at /tmp/pip-req-tracker-sv887ta5
2021-07-10T12:49:30,647 Created build tracker: /tmp/pip-req-tracker-sv887ta5
2021-07-10T12:49:30,647 Entered build tracker: /tmp/pip-req-tracker-sv887ta5
2021-07-10T12:49:30,648 Created temporary directory: /tmp/pip-wheel-0t6_wtp4
2021-07-10T12:49:30,696 1 location(s) to search for versions of bhmm:
2021-07-10T12:49:30,696 * https://pypi.org/simple/bhmm/
2021-07-10T12:49:30,696 Fetching project page and analyzing links: https://pypi.org/simple/bhmm/
2021-07-10T12:49:30,697 Getting page https://pypi.org/simple/bhmm/
2021-07-10T12:49:30,699 Found index url https://pypi.org/simple
2021-07-10T12:49:30,793   Found link https://files.pythonhosted.org/packages/61/56/3de716dfa04d42acf328f665889a2ac487421543ad38ad44f4e55f8155d6/bhmm-0.3.0.tar.gz#sha256=d84fd39fcfc0b933fb835cd4af69f61fd704347e01c5eb2a3e7ce6579c184122 (from https://pypi.org/simple/bhmm/), version: 0.3.0
2021-07-10T12:49:30,793   Found link https://files.pythonhosted.org/packages/b3/52/116bf9a87fb6d56bca3d8d0c87bef8597b43e6cf0a6f2bf4aca530e4ce7f/bhmm-0.4.2.tar.gz#sha256=1bc7a713bbda2c81878d0d798d51692fedfa18707543095e2b9584989cf432b3 (from https://pypi.org/simple/bhmm/), version: 0.4.2
2021-07-10T12:49:30,794   Found link https://files.pythonhosted.org/packages/ca/58/c0eb124efbdf18cb62675a16788ec84b541a4358ebf46e1add74284c9f02/bhmm-0.5.0.tar.gz#sha256=4c094c054646e8baf850699aab398d385a79cf51d91d15f715e6c5d69d74b198 (from https://pypi.org/simple/bhmm/), version: 0.5.0
2021-07-10T12:49:30,794   Found link https://files.pythonhosted.org/packages/91/b4/c01c15efdab2a542db8cae6d49ab860644eea174a3822685cef3a3ed93ac/bhmm-0.5.1.tar.gz#sha256=7bae6d51ddfc88c2cec84ce408a2792f91bfef353621798c597773b8daab487e (from https://pypi.org/simple/bhmm/), version: 0.5.1
2021-07-10T12:49:30,794   Found link https://files.pythonhosted.org/packages/14/17/9043b8dfb2d04ab7de09b3057d37c1385056d63702e4cca539b121e806e6/bhmm-0.5.2.tar.gz#sha256=c2848188a73e7da6735ac7a636f8892f2dd939a6148437cc8fd84c4d2f5b21fb (from https://pypi.org/simple/bhmm/), version: 0.5.2
2021-07-10T12:49:30,795   Found link https://files.pythonhosted.org/packages/ee/78/d607b2d74022a4146c5d1940f9e78ffaaabc55c1defdbe9ddcba92ba08a4/bhmm-0.5.3.tar.gz#sha256=77d4e4ad546537a0f0efd78b3180a7d0d0836e92d9d5efc698fcd7740da46d6f (from https://pypi.org/simple/bhmm/), version: 0.5.3
2021-07-10T12:49:30,795   Found link https://files.pythonhosted.org/packages/a0/16/4ab0903a8a3a9ae3337193221d223b8e2fe8701960b680018bbec5342a03/bhmm-0.6.tar.gz#sha256=a5b0609801d9a61cf36892f975c67294dc24ccef8d1906031c065ec286d56fae (from https://pypi.org/simple/bhmm/), version: 0.6
2021-07-10T12:49:30,795   Found link https://files.pythonhosted.org/packages/b9/6c/552b35b4765fadfcfe796b2b6d28fe38d622a28b74dd882f7980a4acb699/bhmm-0.6.1.tar.gz#sha256=eb5a1d93d7c46f6d2ffcb6901d2bdf3297dcbd4b8835a9da1cbd98c9567f265e (from https://pypi.org/simple/bhmm/), version: 0.6.1
2021-07-10T12:49:30,795   Found link https://files.pythonhosted.org/packages/10/9c/abea596a522277674836b8ec398a30092933826cffc04ad1823be0f06b5c/bhmm-0.6.2.tar.gz#sha256=c2709c101c0e3921aac992b7b24d279f24c1455313b4eae90da83b6332cfa464 (from https://pypi.org/simple/bhmm/), version: 0.6.2
2021-07-10T12:49:30,796   Found link https://files.pythonhosted.org/packages/ac/91/27b35bfc73cfe529ed9d4133b2fa20180ccaa2c6c9f55e49779f1319ecf0/bhmm-0.6.3.tar.gz#sha256=f7a920542a18e65debb894e4287990255e32306f026892fa3b82e902d45e5dd2 (from https://pypi.org/simple/bhmm/), version: 0.6.3
2021-07-10T12:49:30,796 Skipping link: not a file: https://pypi.org/simple/bhmm/
2021-07-10T12:49:30,815 Given no hashes to check 1 links for project 'bhmm': discarding no candidates
2021-07-10T12:49:30,834 Collecting bhmm==0.6
2021-07-10T12:49:30,835   Created temporary directory: /tmp/pip-unpack-zfmguvvx
2021-07-10T12:49:31,083   Downloading bhmm-0.6.tar.gz (290 kB)
2021-07-10T12:49:31,424   Added bhmm==0.6 from https://files.pythonhosted.org/packages/a0/16/4ab0903a8a3a9ae3337193221d223b8e2fe8701960b680018bbec5342a03/bhmm-0.6.tar.gz#sha256=a5b0609801d9a61cf36892f975c67294dc24ccef8d1906031c065ec286d56fae to build tracker '/tmp/pip-req-tracker-sv887ta5'
2021-07-10T12:49:31,425     Running setup.py (path:/tmp/pip-wheel-0t6_wtp4/bhmm_66921e8084b74955aea58a524caf6951/setup.py) egg_info for package bhmm
2021-07-10T12:49:31,426     Created temporary directory: /tmp/pip-pip-egg-info-n7t6hx8b
2021-07-10T12:49:31,426     Running command python setup.py egg_info
2021-07-10T12:49:32,353     running egg_info
2021-07-10T12:49:32,355     creating /tmp/pip-pip-egg-info-n7t6hx8b/bhmm.egg-info
2021-07-10T12:49:32,356     writing /tmp/pip-pip-egg-info-n7t6hx8b/bhmm.egg-info/PKG-INFO
2021-07-10T12:49:32,359     writing dependency_links to /tmp/pip-pip-egg-info-n7t6hx8b/bhmm.egg-info/dependency_links.txt
2021-07-10T12:49:32,360     writing requirements to /tmp/pip-pip-egg-info-n7t6hx8b/bhmm.egg-info/requires.txt
2021-07-10T12:49:33,530     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0t6_wtp4/bhmm_66921e8084b74955aea58a524caf6951/bhmm/hidden/impl_c/hidden.pyx
2021-07-10T12:49:33,530       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T12:49:35,160     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0t6_wtp4/bhmm_66921e8084b74955aea58a524caf6951/bhmm/output_models/impl_c/discrete.pyx
2021-07-10T12:49:35,161       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T12:49:36,474     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-0t6_wtp4/bhmm_66921e8084b74955aea58a524caf6951/bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T12:49:36,475       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T12:49:37,893     Compiling ./bhmm/hidden/impl_c/hidden.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T12:49:37,894     Compiling ./bhmm/output_models/impl_c/discrete.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T12:49:37,894     Compiling ./bhmm/output_models/impl_c/gaussian.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T12:49:37,894     [1/3] Cythonizing ./bhmm/hidden/impl_c/hidden.pyx
2021-07-10T12:49:37,894     [2/3] Cythonizing ./bhmm/output_models/impl_c/discrete.pyx
2021-07-10T12:49:37,894     [3/3] Cythonizing ./bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T12:49:37,895     writing top-level names to /tmp/pip-pip-egg-info-n7t6hx8b/bhmm.egg-info/top_level.txt
2021-07-10T12:49:37,895     writing manifest file '/tmp/pip-pip-egg-info-n7t6hx8b/bhmm.egg-info/SOURCES.txt'
2021-07-10T12:49:37,925     reading manifest file '/tmp/pip-pip-egg-info-n7t6hx8b/bhmm.egg-info/SOURCES.txt'
2021-07-10T12:49:37,926     reading manifest template 'MANIFEST.in'
2021-07-10T12:49:38,043     writing manifest file '/tmp/pip-pip-egg-info-n7t6hx8b/bhmm.egg-info/SOURCES.txt'
2021-07-10T12:49:38,272   Source in /tmp/pip-wheel-0t6_wtp4/bhmm_66921e8084b74955aea58a524caf6951 has version 0.6, which satisfies requirement bhmm==0.6 from https://files.pythonhosted.org/packages/a0/16/4ab0903a8a3a9ae3337193221d223b8e2fe8701960b680018bbec5342a03/bhmm-0.6.tar.gz#sha256=a5b0609801d9a61cf36892f975c67294dc24ccef8d1906031c065ec286d56fae
2021-07-10T12:49:38,273   Removed bhmm==0.6 from https://files.pythonhosted.org/packages/a0/16/4ab0903a8a3a9ae3337193221d223b8e2fe8701960b680018bbec5342a03/bhmm-0.6.tar.gz#sha256=a5b0609801d9a61cf36892f975c67294dc24ccef8d1906031c065ec286d56fae from build tracker '/tmp/pip-req-tracker-sv887ta5'
2021-07-10T12:49:38,278 Created temporary directory: /tmp/pip-unpack-74fjtcaq
2021-07-10T12:49:38,279 Building wheels for collected packages: bhmm
2021-07-10T12:49:38,284   Created temporary directory: /tmp/pip-wheel-l_mqmllx
2021-07-10T12:49:38,285   Building wheel for bhmm (setup.py): started
2021-07-10T12:49:38,285   Destination directory: /tmp/pip-wheel-l_mqmllx
2021-07-10T12:49:38,285   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0t6_wtp4/bhmm_66921e8084b74955aea58a524caf6951/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0t6_wtp4/bhmm_66921e8084b74955aea58a524caf6951/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-l_mqmllx
2021-07-10T12:49:39,460   running bdist_wheel
2021-07-10T12:49:40,429   running build
2021-07-10T12:49:40,430   running build_py
2021-07-10T12:49:40,435   creating build
2021-07-10T12:49:40,436   creating build/lib.linux-armv7l-3.9
2021-07-10T12:49:40,436   creating build/lib.linux-armv7l-3.9/bhmm
2021-07-10T12:49:40,437   copying bhmm/version.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T12:49:40,439   copying bhmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T12:49:40,441   copying bhmm/api.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T12:49:40,444   creating build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T12:49:40,445   copying bhmm/init/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T12:49:40,448   copying bhmm/init/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T12:49:40,449   copying bhmm/init/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T12:49:40,452   creating build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,454   copying bhmm/tests/test_testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,456   copying bhmm/tests/test_mlhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,459   copying bhmm/tests/test_hidden.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,462   copying bhmm/tests/test_mlhmm_patho.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,464   copying bhmm/tests/benchmark_hidden.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,467   copying bhmm/tests/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,469   copying bhmm/tests/test_output_gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,471   copying bhmm/tests/test_init_discrete.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,473   copying bhmm/tests/test_bhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,476   copying bhmm/tests/test_bhmm_patho.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,479   copying bhmm/tests/test_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:49:40,482   creating build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T12:49:40,482   copying bhmm/hidden/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T12:49:40,485   copying bhmm/hidden/api.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T12:49:40,489   creating build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:49:40,490   copying bhmm/util/config.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:49:40,492   copying bhmm/util/types.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:49:40,495   copying bhmm/util/statistics.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:49:40,497   copying bhmm/util/testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:49:40,500   copying bhmm/util/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:49:40,502   copying bhmm/util/logger.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:49:40,504   copying bhmm/util/analysis.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:49:40,507   creating build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:49:40,508   copying bhmm/estimators/bayesian_sampling.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:49:40,511   copying bhmm/estimators/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:49:40,513   copying bhmm/estimators/_tmatrix_disconnected.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:49:40,516   copying bhmm/estimators/maximum_likelihood.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:49:40,520   creating build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:49:40,521   copying bhmm/output_models/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:49:40,524   copying bhmm/output_models/outputmodel.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:49:40,527   copying bhmm/output_models/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:49:40,529   copying bhmm/output_models/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:49:40,533   creating build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-10T12:49:40,533   copying bhmm/_external/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-10T12:49:40,536   creating build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:49:40,537   copying bhmm/hmm/generic_sampled_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:49:40,540   copying bhmm/hmm/gaussian_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:49:40,542   copying bhmm/hmm/generic_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:49:40,545   copying bhmm/hmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:49:40,547   copying bhmm/hmm/discrete_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:49:40,550   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T12:49:40,551   copying bhmm/hidden/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T12:49:40,553   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T12:49:40,554   copying bhmm/hidden/impl_python/hidden.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T12:49:40,557   copying bhmm/hidden/impl_python/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T12:49:40,559   creating build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T12:49:40,560   copying bhmm/output_models/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T12:49:40,563   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T12:49:40,564   copying bhmm/_external/sklearn/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T12:49:40,565   copying bhmm/_external/sklearn/base.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T12:49:40,567   copying bhmm/_external/sklearn/utils.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T12:49:40,570   creating build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T12:49:40,571   copying bhmm/_external/clustering/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T12:49:40,574   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T12:49:40,574   copying bhmm/_external/sklearn/mixture/gmm.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T12:49:40,578   copying bhmm/_external/sklearn/mixture/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T12:49:40,579   creating build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T12:49:40,580   copying bhmm/tests/data/2well_energy.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T12:49:40,582   copying bhmm/tests/data/2well_traj_100K.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T12:49:40,594   copying bhmm/tests/data/2well_P.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T12:49:40,605   running build_ext
2021-07-10T12:49:40,610   building 'bhmm.hidden.impl_c.hidden' extension
2021-07-10T12:49:40,611   creating build/temp.linux-armv7l-3.9
2021-07-10T12:49:40,611   creating build/temp.linux-armv7l-3.9/bhmm
2021-07-10T12:49:40,612   creating build/temp.linux-armv7l-3.9/bhmm/hidden
2021-07-10T12:49:40,613   creating build/temp.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T12:49:40,613   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/_hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o
2021-07-10T12:49:40,760   ./bhmm/hidden/impl_c/_hidden.c: In function ‘_compute_viterbi’:
2021-07-10T12:49:40,760   ./bhmm/hidden/impl_c/_hidden.c:207:26: warning: unused variable ‘p’ [-Wunused-variable]
2021-07-10T12:49:40,760     207 |     double sum, maxprod, p;
2021-07-10T12:49:40,761         |                          ^
2021-07-10T12:49:40,761   ./bhmm/hidden/impl_c/_hidden.c:207:17: warning: unused variable ‘maxprod’ [-Wunused-variable]
2021-07-10T12:49:40,761     207 |     double sum, maxprod, p;
2021-07-10T12:49:40,761         |                 ^~~~~~~
2021-07-10T12:49:41,224   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o
2021-07-10T12:49:41,611   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:49:41,611                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:49:41,611                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:49:41,612                    from ./bhmm/hidden/impl_c/hidden.c:638:
2021-07-10T12:49:41,612   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:49:41,612      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:49:41,612         |  ^~~~~~~
2021-07-10T12:49:47,931   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o -o build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so
2021-07-10T12:49:48,080   building 'bhmm.output_models.impl_c.discrete' extension
2021-07-10T12:49:48,080   creating build/temp.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:49:48,081   creating build/temp.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T12:49:48,081   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o
2021-07-10T12:49:48,135   ./bhmm/output_models/impl_c/_discrete.c: In function ‘_update_pout’:
2021-07-10T12:49:48,136   ./bhmm/output_models/impl_c/_discrete.c:22:12: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T12:49:48,136      22 |     int i, j, t, o;
2021-07-10T12:49:48,136         |            ^
2021-07-10T12:49:48,194   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o
2021-07-10T12:49:48,579   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:49:48,580                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:49:48,580                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:49:48,580                    from ./bhmm/output_models/impl_c/discrete.c:638:
2021-07-10T12:49:48,580   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:49:48,580      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:49:48,580         |  ^~~~~~~
2021-07-10T12:49:50,603   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so
2021-07-10T12:49:50,723   building 'bhmm.output_models.impl_c.gaussian' extension
2021-07-10T12:49:50,724   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o
2021-07-10T12:49:50,893   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o
2021-07-10T12:49:51,280   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:49:51,280                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:49:51,280                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:49:51,280                    from ./bhmm/output_models/impl_c/gaussian.c:638:
2021-07-10T12:49:51,280   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:49:51,280      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:49:51,281         |  ^~~~~~~
2021-07-10T12:49:56,094   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so
2021-07-10T12:49:56,229   building 'bhmm._external.clustering.kmeans_clustering' extension
2021-07-10T12:49:56,230   creating build/temp.linux-armv7l-3.9/bhmm/_external
2021-07-10T12:49:56,230   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T12:49:56,231   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering/src
2021-07-10T12:49:56,231   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/clustering.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o -std=c99 -O3
2021-07-10T12:49:56,609   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:49:56,610                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:49:56,610                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:49:56,610                    from ./bhmm/_external/clustering/include/clustering.h:34,
2021-07-10T12:49:56,610                    from ./bhmm/_external/clustering/src/clustering.c:27:
2021-07-10T12:49:56,610   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:49:56,610      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:49:56,611         |  ^~~~~~~
2021-07-10T12:49:56,807   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/kmeans.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -std=c99 -O3
2021-07-10T12:49:57,111   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:49:57,111                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:49:57,112                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:49:57,112                    from ./bhmm/_external/clustering/include/clustering.h:34,
2021-07-10T12:49:57,112                    from ./bhmm/_external/clustering/src/kmeans.c:27:
2021-07-10T12:49:57,112   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:49:57,112      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:49:57,112         |  ^~~~~~~
2021-07-10T12:49:57,135   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-10T12:49:57,135   ./bhmm/_external/clustering/src/kmeans.c:58:38: warning: variable ‘py_res’ set but not used [-Wunused-but-set-variable]
2021-07-10T12:49:57,135      58 |     PyObject *py_centers, *py_item, *py_res;
2021-07-10T12:49:57,135         |                                      ^~~~~~
2021-07-10T12:49:57,151   At top level:
2021-07-10T12:49:57,152   ./bhmm/_external/clustering/src/kmeans.c:526:1: warning: ‘error_out’ defined but not used [-Wunused-function]
2021-07-10T12:49:57,152     526 | error_out(PyObject *m) {
2021-07-10T12:49:57,152         | ^~~~~~~~~
2021-07-10T12:49:57,265   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-10T12:49:57,266   ./bhmm/_external/clustering/src/kmeans.c:178:50: warning: ‘closest_center_index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T12:49:57,266     178 |          new_centers[closest_center_index*dim+j] += chunk[i*dim+j];
2021-07-10T12:49:57,266         |                                                  ^~
2021-07-10T12:49:57,773   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -o build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so
2021-07-10T12:49:57,900   installing to build/bdist.linux-armv7l/wheel
2021-07-10T12:49:57,901   running install
2021-07-10T12:49:57,902   running install_lib
2021-07-10T12:49:57,907   creating build/bdist.linux-armv7l
2021-07-10T12:49:57,907   creating build/bdist.linux-armv7l/wheel
2021-07-10T12:49:57,909   creating build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T12:49:57,911   creating build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T12:49:57,912   copying build/lib.linux-armv7l-3.9/bhmm/init/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T12:49:57,916   copying build/lib.linux-armv7l-3.9/bhmm/init/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T12:49:57,918   copying build/lib.linux-armv7l-3.9/bhmm/init/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T12:49:57,921   creating build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,923   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,926   creating build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T12:49:57,927   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_energy.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T12:49:57,929   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_traj_100K.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T12:49:57,938   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_P.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T12:49:57,941   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_mlhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,943   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,946   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_mlhmm_patho.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,948   copying build/lib.linux-armv7l-3.9/bhmm/tests/benchmark_hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,951   copying build/lib.linux-armv7l-3.9/bhmm/tests/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,953   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_output_gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,955   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_init_discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,958   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_bhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,960   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_bhmm_patho.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,963   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:49:57,965   copying build/lib.linux-armv7l-3.9/bhmm/version.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T12:49:57,967   creating build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T12:49:57,969   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T12:49:57,970   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T12:49:57,984   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T12:49:57,987   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T12:49:57,987   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T12:49:57,990   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T12:49:57,992   copying build/lib.linux-armv7l-3.9/bhmm/hidden/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T12:49:57,994   copying build/lib.linux-armv7l-3.9/bhmm/hidden/api.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T12:49:57,997   creating build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:49:57,998   copying build/lib.linux-armv7l-3.9/bhmm/util/config.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:49:58,000   copying build/lib.linux-armv7l-3.9/bhmm/util/types.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:49:58,003   copying build/lib.linux-armv7l-3.9/bhmm/util/statistics.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:49:58,005   copying build/lib.linux-armv7l-3.9/bhmm/util/testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:49:58,008   copying build/lib.linux-armv7l-3.9/bhmm/util/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:49:58,010   copying build/lib.linux-armv7l-3.9/bhmm/util/logger.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:49:58,013   copying build/lib.linux-armv7l-3.9/bhmm/util/analysis.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:49:58,015   copying build/lib.linux-armv7l-3.9/bhmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T12:49:58,018   creating build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:49:58,019   copying build/lib.linux-armv7l-3.9/bhmm/estimators/bayesian_sampling.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:49:58,022   copying build/lib.linux-armv7l-3.9/bhmm/estimators/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:49:58,024   copying build/lib.linux-armv7l-3.9/bhmm/estimators/_tmatrix_disconnected.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:49:58,027   copying build/lib.linux-armv7l-3.9/bhmm/estimators/maximum_likelihood.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:49:58,031   creating build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:49:58,032   copying build/lib.linux-armv7l-3.9/bhmm/output_models/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:49:58,036   creating build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T12:49:58,037   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T12:49:58,039   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T12:49:58,052   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T12:49:58,058   copying build/lib.linux-armv7l-3.9/bhmm/output_models/outputmodel.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:49:58,060   copying build/lib.linux-armv7l-3.9/bhmm/output_models/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:49:58,062   copying build/lib.linux-armv7l-3.9/bhmm/output_models/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:49:58,065   creating build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-10T12:49:58,067   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T12:49:58,068   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T12:49:58,070   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/base.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T12:49:58,073   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T12:49:58,074   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/gmm.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T12:49:58,077   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T12:49:58,079   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/utils.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T12:49:58,082   creating build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T12:49:58,083   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T12:49:58,085   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T12:49:58,089   copying build/lib.linux-armv7l-3.9/bhmm/_external/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-10T12:49:58,091   copying build/lib.linux-armv7l-3.9/bhmm/api.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T12:49:58,094   creating build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:49:58,095   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_sampled_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:49:58,098   copying build/lib.linux-armv7l-3.9/bhmm/hmm/gaussian_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:49:58,100   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:49:58,103   copying build/lib.linux-armv7l-3.9/bhmm/hmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:49:58,105   copying build/lib.linux-armv7l-3.9/bhmm/hmm/discrete_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:49:58,107   running install_egg_info
2021-07-10T12:49:58,133   running egg_info
2021-07-10T12:49:58,134   writing bhmm.egg-info/PKG-INFO
2021-07-10T12:49:58,136   writing dependency_links to bhmm.egg-info/dependency_links.txt
2021-07-10T12:49:58,138   writing requirements to bhmm.egg-info/requires.txt
2021-07-10T12:49:58,139   writing top-level names to bhmm.egg-info/top_level.txt
2021-07-10T12:49:58,161   reading manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T12:49:58,166   reading manifest template 'MANIFEST.in'
2021-07-10T12:49:58,303   writing manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T12:49:58,304   Copying bhmm.egg-info to build/bdist.linux-armv7l/wheel/bhmm-0.6-py3.9.egg-info
2021-07-10T12:49:58,321   running install_scripts
2021-07-10T12:49:58,368   creating build/bdist.linux-armv7l/wheel/bhmm-0.6.dist-info/WHEEL
2021-07-10T12:49:58,371   creating '/tmp/pip-wheel-l_mqmllx/bhmm-0.6-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T12:49:58,373   adding 'bhmm/__init__.py'
2021-07-10T12:49:58,377   adding 'bhmm/api.py'
2021-07-10T12:49:58,378   adding 'bhmm/version.py'
2021-07-10T12:49:58,380   adding 'bhmm/_external/__init__.py'
2021-07-10T12:49:58,381   adding 'bhmm/_external/clustering/__init__.py'
2021-07-10T12:49:58,395   adding 'bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T12:49:58,397   adding 'bhmm/_external/sklearn/__init__.py'
2021-07-10T12:49:58,399   adding 'bhmm/_external/sklearn/base.py'
2021-07-10T12:49:58,401   adding 'bhmm/_external/sklearn/utils.py'
2021-07-10T12:49:58,403   adding 'bhmm/_external/sklearn/mixture/__init__.py'
2021-07-10T12:49:58,406   adding 'bhmm/_external/sklearn/mixture/gmm.py'
2021-07-10T12:49:58,408   adding 'bhmm/estimators/__init__.py'
2021-07-10T12:49:58,410   adding 'bhmm/estimators/_tmatrix_disconnected.py'
2021-07-10T12:49:58,412   adding 'bhmm/estimators/bayesian_sampling.py'
2021-07-10T12:49:58,415   adding 'bhmm/estimators/maximum_likelihood.py'
2021-07-10T12:49:58,417   adding 'bhmm/hidden/__init__.py'
2021-07-10T12:49:58,418   adding 'bhmm/hidden/api.py'
2021-07-10T12:49:58,420   adding 'bhmm/hidden/impl_c/__init__.py'
2021-07-10T12:49:58,510   adding 'bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T12:49:58,515   adding 'bhmm/hidden/impl_python/__init__.py'
2021-07-10T12:49:58,517   adding 'bhmm/hidden/impl_python/hidden.py'
2021-07-10T12:49:58,518   adding 'bhmm/hmm/__init__.py'
2021-07-10T12:49:58,520   adding 'bhmm/hmm/discrete_hmm.py'
2021-07-10T12:49:58,521   adding 'bhmm/hmm/gaussian_hmm.py'
2021-07-10T12:49:58,523   adding 'bhmm/hmm/generic_hmm.py'
2021-07-10T12:49:58,525   adding 'bhmm/hmm/generic_sampled_hmm.py'
2021-07-10T12:49:58,527   adding 'bhmm/init/__init__.py'
2021-07-10T12:49:58,529   adding 'bhmm/init/discrete.py'
2021-07-10T12:49:58,530   adding 'bhmm/init/gaussian.py'
2021-07-10T12:49:58,532   adding 'bhmm/output_models/__init__.py'
2021-07-10T12:49:58,534   adding 'bhmm/output_models/discrete.py'
2021-07-10T12:49:58,536   adding 'bhmm/output_models/gaussian.py'
2021-07-10T12:49:58,538   adding 'bhmm/output_models/outputmodel.py'
2021-07-10T12:49:58,540   adding 'bhmm/output_models/impl_c/__init__.py'
2021-07-10T12:49:58,571   adding 'bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T12:49:58,643   adding 'bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T12:49:58,647   adding 'bhmm/tests/__init__.py'
2021-07-10T12:49:58,649   adding 'bhmm/tests/benchmark_hidden.py'
2021-07-10T12:49:58,650   adding 'bhmm/tests/test_bhmm.py'
2021-07-10T12:49:58,651   adding 'bhmm/tests/test_bhmm_patho.py'
2021-07-10T12:49:58,653   adding 'bhmm/tests/test_hidden.py'
2021-07-10T12:49:58,654   adding 'bhmm/tests/test_hmm.py'
2021-07-10T12:49:58,656   adding 'bhmm/tests/test_init_discrete.py'
2021-07-10T12:49:58,657   adding 'bhmm/tests/test_mlhmm.py'
2021-07-10T12:49:58,658   adding 'bhmm/tests/test_mlhmm_patho.py'
2021-07-10T12:49:58,660   adding 'bhmm/tests/test_output_gaussian.py'
2021-07-10T12:49:58,661   adding 'bhmm/tests/test_testsystems.py'
2021-07-10T12:49:58,663   adding 'bhmm/tests/data/2well_P.dat'
2021-07-10T12:49:58,664   adding 'bhmm/tests/data/2well_energy.dat'
2021-07-10T12:49:58,739   adding 'bhmm/tests/data/2well_traj_100K.dat'
2021-07-10T12:49:58,743   adding 'bhmm/util/__init__.py'
2021-07-10T12:49:58,745   adding 'bhmm/util/analysis.py'
2021-07-10T12:49:58,746   adding 'bhmm/util/config.py'
2021-07-10T12:49:58,747   adding 'bhmm/util/logger.py'
2021-07-10T12:49:58,748   adding 'bhmm/util/statistics.py'
2021-07-10T12:49:58,750   adding 'bhmm/util/testsystems.py'
2021-07-10T12:49:58,752   adding 'bhmm/util/types.py'
2021-07-10T12:49:58,754   adding 'bhmm-0.6.dist-info/METADATA'
2021-07-10T12:49:58,755   adding 'bhmm-0.6.dist-info/WHEEL'
2021-07-10T12:49:58,756   adding 'bhmm-0.6.dist-info/pbr.json'
2021-07-10T12:49:58,757   adding 'bhmm-0.6.dist-info/top_level.txt'
2021-07-10T12:49:58,758   adding 'bhmm-0.6.dist-info/RECORD'
2021-07-10T12:49:58,769   removing build/bdist.linux-armv7l/wheel
2021-07-10T12:49:58,940   Building wheel for bhmm (setup.py): finished with status 'done'
2021-07-10T12:49:58,949   Created wheel for bhmm: filename=bhmm-0.6-cp39-cp39-linux_armv7l.whl size=537006 sha256=5f78f1788ead63c7b135da11057a1f93bb9ee9b53ee60d6a23ec66c68029d69a
2021-07-10T12:49:58,949   Stored in directory: /tmp/pip-ephem-wheel-cache-63y774sq/wheels/df/e0/ed/fbab1118a5c09f0e5bf82786a0d93bb4fa8932ba7fad406988
2021-07-10T12:49:58,962 Successfully built bhmm
2021-07-10T12:49:58,987 Removed build tracker: '/tmp/pip-req-tracker-sv887ta5'