2021-07-10T12:50:32,751 Created temporary directory: /tmp/pip-ephem-wheel-cache-ct4vahna
2021-07-10T12:50:32,754 Created temporary directory: /tmp/pip-req-tracker-7mpe2q7y
2021-07-10T12:50:32,755 Initialized build tracking at /tmp/pip-req-tracker-7mpe2q7y
2021-07-10T12:50:32,755 Created build tracker: /tmp/pip-req-tracker-7mpe2q7y
2021-07-10T12:50:32,755 Entered build tracker: /tmp/pip-req-tracker-7mpe2q7y
2021-07-10T12:50:32,756 Created temporary directory: /tmp/pip-wheel-llh7v0er
2021-07-10T12:50:32,785 1 location(s) to search for versions of bhmm:
2021-07-10T12:50:32,785 * https://pypi.org/simple/bhmm/
2021-07-10T12:50:32,786 Fetching project page and analyzing links: https://pypi.org/simple/bhmm/
2021-07-10T12:50:32,786 Getting page https://pypi.org/simple/bhmm/
2021-07-10T12:50:32,788 Found index url https://pypi.org/simple
2021-07-10T12:50:32,880   Found link https://files.pythonhosted.org/packages/61/56/3de716dfa04d42acf328f665889a2ac487421543ad38ad44f4e55f8155d6/bhmm-0.3.0.tar.gz#sha256=d84fd39fcfc0b933fb835cd4af69f61fd704347e01c5eb2a3e7ce6579c184122 (from https://pypi.org/simple/bhmm/), version: 0.3.0
2021-07-10T12:50:32,880   Found link https://files.pythonhosted.org/packages/b3/52/116bf9a87fb6d56bca3d8d0c87bef8597b43e6cf0a6f2bf4aca530e4ce7f/bhmm-0.4.2.tar.gz#sha256=1bc7a713bbda2c81878d0d798d51692fedfa18707543095e2b9584989cf432b3 (from https://pypi.org/simple/bhmm/), version: 0.4.2
2021-07-10T12:50:32,881   Found link https://files.pythonhosted.org/packages/ca/58/c0eb124efbdf18cb62675a16788ec84b541a4358ebf46e1add74284c9f02/bhmm-0.5.0.tar.gz#sha256=4c094c054646e8baf850699aab398d385a79cf51d91d15f715e6c5d69d74b198 (from https://pypi.org/simple/bhmm/), version: 0.5.0
2021-07-10T12:50:32,881   Found link https://files.pythonhosted.org/packages/91/b4/c01c15efdab2a542db8cae6d49ab860644eea174a3822685cef3a3ed93ac/bhmm-0.5.1.tar.gz#sha256=7bae6d51ddfc88c2cec84ce408a2792f91bfef353621798c597773b8daab487e (from https://pypi.org/simple/bhmm/), version: 0.5.1
2021-07-10T12:50:32,881   Found link https://files.pythonhosted.org/packages/14/17/9043b8dfb2d04ab7de09b3057d37c1385056d63702e4cca539b121e806e6/bhmm-0.5.2.tar.gz#sha256=c2848188a73e7da6735ac7a636f8892f2dd939a6148437cc8fd84c4d2f5b21fb (from https://pypi.org/simple/bhmm/), version: 0.5.2
2021-07-10T12:50:32,881   Found link https://files.pythonhosted.org/packages/ee/78/d607b2d74022a4146c5d1940f9e78ffaaabc55c1defdbe9ddcba92ba08a4/bhmm-0.5.3.tar.gz#sha256=77d4e4ad546537a0f0efd78b3180a7d0d0836e92d9d5efc698fcd7740da46d6f (from https://pypi.org/simple/bhmm/), version: 0.5.3
2021-07-10T12:50:32,882   Found link https://files.pythonhosted.org/packages/a0/16/4ab0903a8a3a9ae3337193221d223b8e2fe8701960b680018bbec5342a03/bhmm-0.6.tar.gz#sha256=a5b0609801d9a61cf36892f975c67294dc24ccef8d1906031c065ec286d56fae (from https://pypi.org/simple/bhmm/), version: 0.6
2021-07-10T12:50:32,882   Found link https://files.pythonhosted.org/packages/b9/6c/552b35b4765fadfcfe796b2b6d28fe38d622a28b74dd882f7980a4acb699/bhmm-0.6.1.tar.gz#sha256=eb5a1d93d7c46f6d2ffcb6901d2bdf3297dcbd4b8835a9da1cbd98c9567f265e (from https://pypi.org/simple/bhmm/), version: 0.6.1
2021-07-10T12:50:32,882   Found link https://files.pythonhosted.org/packages/10/9c/abea596a522277674836b8ec398a30092933826cffc04ad1823be0f06b5c/bhmm-0.6.2.tar.gz#sha256=c2709c101c0e3921aac992b7b24d279f24c1455313b4eae90da83b6332cfa464 (from https://pypi.org/simple/bhmm/), version: 0.6.2
2021-07-10T12:50:32,883   Found link https://files.pythonhosted.org/packages/ac/91/27b35bfc73cfe529ed9d4133b2fa20180ccaa2c6c9f55e49779f1319ecf0/bhmm-0.6.3.tar.gz#sha256=f7a920542a18e65debb894e4287990255e32306f026892fa3b82e902d45e5dd2 (from https://pypi.org/simple/bhmm/), version: 0.6.3
2021-07-10T12:50:32,883 Skipping link: not a file: https://pypi.org/simple/bhmm/
2021-07-10T12:50:32,902 Given no hashes to check 1 links for project 'bhmm': discarding no candidates
2021-07-10T12:50:32,920 Collecting bhmm==0.6.1
2021-07-10T12:50:32,922   Created temporary directory: /tmp/pip-unpack-4_w4zbhw
2021-07-10T12:50:33,102   Downloading bhmm-0.6.1.tar.gz (290 kB)
2021-07-10T12:50:33,405   Added bhmm==0.6.1 from https://files.pythonhosted.org/packages/b9/6c/552b35b4765fadfcfe796b2b6d28fe38d622a28b74dd882f7980a4acb699/bhmm-0.6.1.tar.gz#sha256=eb5a1d93d7c46f6d2ffcb6901d2bdf3297dcbd4b8835a9da1cbd98c9567f265e to build tracker '/tmp/pip-req-tracker-7mpe2q7y'
2021-07-10T12:50:33,406     Running setup.py (path:/tmp/pip-wheel-llh7v0er/bhmm_74ecf2c7dae74ad4ac9ca4b488b63b7e/setup.py) egg_info for package bhmm
2021-07-10T12:50:33,407     Created temporary directory: /tmp/pip-pip-egg-info-2x2f2k00
2021-07-10T12:50:33,407     Running command python setup.py egg_info
2021-07-10T12:50:34,454     running egg_info
2021-07-10T12:50:34,456     creating /tmp/pip-pip-egg-info-2x2f2k00/bhmm.egg-info
2021-07-10T12:50:34,457     writing /tmp/pip-pip-egg-info-2x2f2k00/bhmm.egg-info/PKG-INFO
2021-07-10T12:50:34,460     writing dependency_links to /tmp/pip-pip-egg-info-2x2f2k00/bhmm.egg-info/dependency_links.txt
2021-07-10T12:50:34,462     writing requirements to /tmp/pip-pip-egg-info-2x2f2k00/bhmm.egg-info/requires.txt
2021-07-10T12:50:35,646     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-llh7v0er/bhmm_74ecf2c7dae74ad4ac9ca4b488b63b7e/bhmm/hidden/impl_c/hidden.pyx
2021-07-10T12:50:35,646       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T12:50:37,285     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-llh7v0er/bhmm_74ecf2c7dae74ad4ac9ca4b488b63b7e/bhmm/output_models/impl_c/discrete.pyx
2021-07-10T12:50:37,286       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T12:50:38,607     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-llh7v0er/bhmm_74ecf2c7dae74ad4ac9ca4b488b63b7e/bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T12:50:38,608       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-10T12:50:40,038     Compiling ./bhmm/hidden/impl_c/hidden.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T12:50:40,038     Compiling ./bhmm/output_models/impl_c/discrete.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T12:50:40,038     Compiling ./bhmm/output_models/impl_c/gaussian.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-10T12:50:40,038     [1/3] Cythonizing ./bhmm/hidden/impl_c/hidden.pyx
2021-07-10T12:50:40,038     [2/3] Cythonizing ./bhmm/output_models/impl_c/discrete.pyx
2021-07-10T12:50:40,039     [3/3] Cythonizing ./bhmm/output_models/impl_c/gaussian.pyx
2021-07-10T12:50:40,039     writing top-level names to /tmp/pip-pip-egg-info-2x2f2k00/bhmm.egg-info/top_level.txt
2021-07-10T12:50:40,040     writing manifest file '/tmp/pip-pip-egg-info-2x2f2k00/bhmm.egg-info/SOURCES.txt'
2021-07-10T12:50:40,114     reading manifest file '/tmp/pip-pip-egg-info-2x2f2k00/bhmm.egg-info/SOURCES.txt'
2021-07-10T12:50:40,116     reading manifest template 'MANIFEST.in'
2021-07-10T12:50:40,245     writing manifest file '/tmp/pip-pip-egg-info-2x2f2k00/bhmm.egg-info/SOURCES.txt'
2021-07-10T12:50:40,484   Source in /tmp/pip-wheel-llh7v0er/bhmm_74ecf2c7dae74ad4ac9ca4b488b63b7e has version 0.6.1, which satisfies requirement bhmm==0.6.1 from https://files.pythonhosted.org/packages/b9/6c/552b35b4765fadfcfe796b2b6d28fe38d622a28b74dd882f7980a4acb699/bhmm-0.6.1.tar.gz#sha256=eb5a1d93d7c46f6d2ffcb6901d2bdf3297dcbd4b8835a9da1cbd98c9567f265e
2021-07-10T12:50:40,485   Removed bhmm==0.6.1 from https://files.pythonhosted.org/packages/b9/6c/552b35b4765fadfcfe796b2b6d28fe38d622a28b74dd882f7980a4acb699/bhmm-0.6.1.tar.gz#sha256=eb5a1d93d7c46f6d2ffcb6901d2bdf3297dcbd4b8835a9da1cbd98c9567f265e from build tracker '/tmp/pip-req-tracker-7mpe2q7y'
2021-07-10T12:50:40,489 Created temporary directory: /tmp/pip-unpack-grll6i2w
2021-07-10T12:50:40,490 Building wheels for collected packages: bhmm
2021-07-10T12:50:40,494   Created temporary directory: /tmp/pip-wheel-u0i4t5jh
2021-07-10T12:50:40,495   Building wheel for bhmm (setup.py): started
2021-07-10T12:50:40,495   Destination directory: /tmp/pip-wheel-u0i4t5jh
2021-07-10T12:50:40,495   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-llh7v0er/bhmm_74ecf2c7dae74ad4ac9ca4b488b63b7e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-llh7v0er/bhmm_74ecf2c7dae74ad4ac9ca4b488b63b7e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-u0i4t5jh
2021-07-10T12:50:41,538   running bdist_wheel
2021-07-10T12:50:42,508   running build
2021-07-10T12:50:42,508   running build_py
2021-07-10T12:50:42,514   creating build
2021-07-10T12:50:42,514   creating build/lib.linux-armv7l-3.9
2021-07-10T12:50:42,515   creating build/lib.linux-armv7l-3.9/bhmm
2021-07-10T12:50:42,516   copying bhmm/version.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T12:50:42,518   copying bhmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T12:50:42,520   copying bhmm/api.py -> build/lib.linux-armv7l-3.9/bhmm
2021-07-10T12:50:42,523   creating build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:50:42,524   copying bhmm/estimators/bayesian_sampling.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:50:42,527   copying bhmm/estimators/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:50:42,529   copying bhmm/estimators/_tmatrix_disconnected.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:50:42,531   copying bhmm/estimators/maximum_likelihood.py -> build/lib.linux-armv7l-3.9/bhmm/estimators
2021-07-10T12:50:42,534   creating build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-10T12:50:42,535   copying bhmm/_external/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external
2021-07-10T12:50:42,537   creating build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:50:42,538   copying bhmm/output_models/outputmodel.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:50:42,540   copying bhmm/output_models/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:50:42,543   copying bhmm/output_models/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:50:42,545   copying bhmm/output_models/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:50:42,549   creating build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:50:42,550   copying bhmm/hmm/gaussian_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:50:42,553   copying bhmm/hmm/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:50:42,555   copying bhmm/hmm/generic_sampled_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:50:42,557   copying bhmm/hmm/generic_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:50:42,561   copying bhmm/hmm/discrete_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/hmm
2021-07-10T12:50:42,563   creating build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T12:50:42,564   copying bhmm/hidden/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T12:50:42,567   copying bhmm/hidden/api.py -> build/lib.linux-armv7l-3.9/bhmm/hidden
2021-07-10T12:50:42,570   creating build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T12:50:42,571   copying bhmm/init/discrete.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T12:50:42,574   copying bhmm/init/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T12:50:42,576   copying bhmm/init/gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/init
2021-07-10T12:50:42,579   creating build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:50:42,580   copying bhmm/util/analysis.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:50:42,583   copying bhmm/util/testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:50:42,585   copying bhmm/util/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:50:42,587   copying bhmm/util/logger.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:50:42,589   copying bhmm/util/statistics.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:50:42,592   copying bhmm/util/config.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:50:42,593   copying bhmm/util/types.py -> build/lib.linux-armv7l-3.9/bhmm/util
2021-07-10T12:50:42,597   creating build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,598   copying bhmm/tests/test_output_gaussian.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,600   copying bhmm/tests/benchmark_hidden.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,603   copying bhmm/tests/test_bhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,605   copying bhmm/tests/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,607   copying bhmm/tests/test_init_discrete.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,609   copying bhmm/tests/test_hmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,612   copying bhmm/tests/test_hidden.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,614   copying bhmm/tests/test_testsystems.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,616   copying bhmm/tests/test_mlhmm_patho.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,618   copying bhmm/tests/test_bhmm_patho.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,620   copying bhmm/tests/test_mlhmm.py -> build/lib.linux-armv7l-3.9/bhmm/tests
2021-07-10T12:50:42,623   creating build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T12:50:42,624   copying bhmm/_external/clustering/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T12:50:42,626   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T12:50:42,627   copying bhmm/_external/sklearn/utils.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T12:50:42,630   copying bhmm/_external/sklearn/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T12:50:42,632   copying bhmm/_external/sklearn/base.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn
2021-07-10T12:50:42,635   creating build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T12:50:42,636   copying bhmm/_external/sklearn/mixture/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T12:50:42,638   copying bhmm/_external/sklearn/mixture/gmm.py -> build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture
2021-07-10T12:50:42,642   creating build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T12:50:42,643   copying bhmm/output_models/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T12:50:42,646   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T12:50:42,646   copying bhmm/hidden/impl_python/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T12:50:42,648   copying bhmm/hidden/impl_python/hidden.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python
2021-07-10T12:50:42,651   creating build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T12:50:42,652   copying bhmm/hidden/impl_c/__init__.py -> build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T12:50:42,654   creating build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T12:50:42,655   copying bhmm/tests/data/2well_traj_100K.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T12:50:42,666   copying bhmm/tests/data/2well_energy.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T12:50:42,668   copying bhmm/tests/data/2well_P.dat -> build/lib.linux-armv7l-3.9/bhmm/tests/data
2021-07-10T12:50:42,683   running build_ext
2021-07-10T12:50:42,689   building 'bhmm.hidden.impl_c.hidden' extension
2021-07-10T12:50:42,690   creating build/temp.linux-armv7l-3.9
2021-07-10T12:50:42,690   creating build/temp.linux-armv7l-3.9/bhmm
2021-07-10T12:50:42,691   creating build/temp.linux-armv7l-3.9/bhmm/hidden
2021-07-10T12:50:42,692   creating build/temp.linux-armv7l-3.9/bhmm/hidden/impl_c
2021-07-10T12:50:42,692   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/_hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o
2021-07-10T12:50:42,838   ./bhmm/hidden/impl_c/_hidden.c: In function ‘_compute_viterbi’:
2021-07-10T12:50:42,838   ./bhmm/hidden/impl_c/_hidden.c:207:26: warning: unused variable ‘p’ [-Wunused-variable]
2021-07-10T12:50:42,838     207 |     double sum, maxprod, p;
2021-07-10T12:50:42,838         |                          ^
2021-07-10T12:50:42,838   ./bhmm/hidden/impl_c/_hidden.c:207:17: warning: unused variable ‘maxprod’ [-Wunused-variable]
2021-07-10T12:50:42,839     207 |     double sum, maxprod, p;
2021-07-10T12:50:42,839         |                 ^~~~~~~
2021-07-10T12:50:43,298   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/hidden/impl_c -I/bhmm/hidden/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/hidden/impl_c/hidden.c -o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o
2021-07-10T12:50:43,696   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:50:43,696                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:50:43,696                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:50:43,696                    from ./bhmm/hidden/impl_c/hidden.c:638:
2021-07-10T12:50:43,696   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:50:43,697      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:50:43,697         |  ^~~~~~~
2021-07-10T12:50:50,000   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/_hidden.o build/temp.linux-armv7l-3.9/./bhmm/hidden/impl_c/hidden.o -o build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so
2021-07-10T12:50:50,148   building 'bhmm.output_models.impl_c.discrete' extension
2021-07-10T12:50:50,148   creating build/temp.linux-armv7l-3.9/bhmm/output_models
2021-07-10T12:50:50,149   creating build/temp.linux-armv7l-3.9/bhmm/output_models/impl_c
2021-07-10T12:50:50,149   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o
2021-07-10T12:50:50,207   ./bhmm/output_models/impl_c/_discrete.c: In function ‘_update_pout’:
2021-07-10T12:50:50,207   ./bhmm/output_models/impl_c/_discrete.c:22:12: warning: unused variable ‘j’ [-Wunused-variable]
2021-07-10T12:50:50,208      22 |     int i, j, t, o;
2021-07-10T12:50:50,208         |            ^
2021-07-10T12:50:50,264   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/discrete.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o
2021-07-10T12:50:50,657   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:50:50,657                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:50:50,657                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:50:50,658                    from ./bhmm/output_models/impl_c/discrete.c:638:
2021-07-10T12:50:50,658   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:50:50,658      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:50:50,658         |  ^~~~~~~
2021-07-10T12:50:52,673   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_discrete.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/discrete.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so
2021-07-10T12:50:52,790   building 'bhmm.output_models.impl_c.gaussian' extension
2021-07-10T12:50:52,791   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/_gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o
2021-07-10T12:50:52,963   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/output_models/impl_c -I/bhmm/output_models/impl_c/ -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/output_models/impl_c/gaussian.c -o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o
2021-07-10T12:50:53,359   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:50:53,359                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:50:53,360                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:50:53,360                    from ./bhmm/output_models/impl_c/gaussian.c:638:
2021-07-10T12:50:53,360   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:50:53,360      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:50:53,360         |  ^~~~~~~
2021-07-10T12:50:58,148   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/_gaussian.o build/temp.linux-armv7l-3.9/./bhmm/output_models/impl_c/gaussian.o -o build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so
2021-07-10T12:50:58,285   building 'bhmm._external.clustering.kmeans_clustering' extension
2021-07-10T12:50:58,285   creating build/temp.linux-armv7l-3.9/bhmm/_external
2021-07-10T12:50:58,286   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering
2021-07-10T12:50:58,286   creating build/temp.linux-armv7l-3.9/bhmm/_external/clustering/src
2021-07-10T12:50:58,287   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/clustering.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o -std=c99 -O3
2021-07-10T12:50:58,665   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:50:58,665                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:50:58,666                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:50:58,666                    from ./bhmm/_external/clustering/include/clustering.h:34,
2021-07-10T12:50:58,666                    from ./bhmm/_external/clustering/src/clustering.c:27:
2021-07-10T12:50:58,666   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:50:58,666      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:50:58,666         |  ^~~~~~~
2021-07-10T12:50:58,864   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./bhmm/_external/clustering/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c ./bhmm/_external/clustering/src/kmeans.c -o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -std=c99 -O3
2021-07-10T12:50:59,186   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-10T12:50:59,186                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-10T12:50:59,187                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-10T12:50:59,187                    from ./bhmm/_external/clustering/include/clustering.h:34,
2021-07-10T12:50:59,187                    from ./bhmm/_external/clustering/src/kmeans.c:27:
2021-07-10T12:50:59,187   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-10T12:50:59,187      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-10T12:50:59,187         |  ^~~~~~~
2021-07-10T12:50:59,213   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-10T12:50:59,213   ./bhmm/_external/clustering/src/kmeans.c:58:38: warning: variable ‘py_res’ set but not used [-Wunused-but-set-variable]
2021-07-10T12:50:59,214      58 |     PyObject *py_centers, *py_item, *py_res;
2021-07-10T12:50:59,214         |                                      ^~~~~~
2021-07-10T12:50:59,231   At top level:
2021-07-10T12:50:59,231   ./bhmm/_external/clustering/src/kmeans.c:526:1: warning: ‘error_out’ defined but not used [-Wunused-function]
2021-07-10T12:50:59,231     526 | error_out(PyObject *m) {
2021-07-10T12:50:59,232         | ^~~~~~~~~
2021-07-10T12:50:59,344   ./bhmm/_external/clustering/src/kmeans.c: In function ‘cluster’:
2021-07-10T12:50:59,344   ./bhmm/_external/clustering/src/kmeans.c:178:50: warning: ‘closest_center_index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T12:50:59,345     178 |          new_centers[closest_center_index*dim+j] += chunk[i*dim+j];
2021-07-10T12:50:59,345         |                                                  ^~
2021-07-10T12:50:59,852   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/clustering.o build/temp.linux-armv7l-3.9/./bhmm/_external/clustering/src/kmeans.o -o build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so
2021-07-10T12:50:59,978   installing to build/bdist.linux-armv7l/wheel
2021-07-10T12:50:59,978   running install
2021-07-10T12:50:59,979   running install_lib
2021-07-10T12:50:59,984   creating build/bdist.linux-armv7l
2021-07-10T12:50:59,984   creating build/bdist.linux-armv7l/wheel
2021-07-10T12:50:59,987   creating build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T12:50:59,988   copying build/lib.linux-armv7l-3.9/bhmm/version.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T12:50:59,991   creating build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:50:59,992   copying build/lib.linux-armv7l-3.9/bhmm/estimators/bayesian_sampling.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:50:59,994   copying build/lib.linux-armv7l-3.9/bhmm/estimators/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:50:59,996   copying build/lib.linux-armv7l-3.9/bhmm/estimators/_tmatrix_disconnected.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:50:59,998   copying build/lib.linux-armv7l-3.9/bhmm/estimators/maximum_likelihood.py -> build/bdist.linux-armv7l/wheel/bhmm/estimators
2021-07-10T12:51:00,001   creating build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-10T12:51:00,003   creating build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T12:51:00,004   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T12:51:00,005   copying build/lib.linux-armv7l-3.9/bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/_external/clustering
2021-07-10T12:51:00,009   copying build/lib.linux-armv7l-3.9/bhmm/_external/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external
2021-07-10T12:51:00,011   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T12:51:00,012   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/utils.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T12:51:00,015   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T12:51:00,017   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/base.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn
2021-07-10T12:51:00,019   creating build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T12:51:00,020   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T12:51:00,022   copying build/lib.linux-armv7l-3.9/bhmm/_external/sklearn/mixture/gmm.py -> build/bdist.linux-armv7l/wheel/bhmm/_external/sklearn/mixture
2021-07-10T12:51:00,026   creating build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:51:00,027   copying build/lib.linux-armv7l-3.9/bhmm/output_models/outputmodel.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:51:00,029   copying build/lib.linux-armv7l-3.9/bhmm/output_models/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:51:00,032   copying build/lib.linux-armv7l-3.9/bhmm/output_models/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:51:00,034   copying build/lib.linux-armv7l-3.9/bhmm/output_models/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models
2021-07-10T12:51:00,038   creating build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T12:51:00,038   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T12:51:00,045   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T12:51:00,047   copying build/lib.linux-armv7l-3.9/bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/output_models/impl_c
2021-07-10T12:51:00,063   creating build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:51:00,064   copying build/lib.linux-armv7l-3.9/bhmm/hmm/gaussian_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:51:00,066   copying build/lib.linux-armv7l-3.9/bhmm/hmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:51:00,068   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_sampled_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:51:00,071   copying build/lib.linux-armv7l-3.9/bhmm/hmm/generic_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:51:00,074   copying build/lib.linux-armv7l-3.9/bhmm/hmm/discrete_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/hmm
2021-07-10T12:51:00,076   copying build/lib.linux-armv7l-3.9/bhmm/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T12:51:00,079   creating build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T12:51:00,079   copying build/lib.linux-armv7l-3.9/bhmm/hidden/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T12:51:00,082   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T12:51:00,083   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T12:51:00,084   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_python/hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_python
2021-07-10T12:51:00,087   copying build/lib.linux-armv7l-3.9/bhmm/hidden/api.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden
2021-07-10T12:51:00,090   creating build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T12:51:00,091   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T12:51:00,103   copying build/lib.linux-armv7l-3.9/bhmm/hidden/impl_c/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/hidden/impl_c
2021-07-10T12:51:00,106   creating build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T12:51:00,107   copying build/lib.linux-armv7l-3.9/bhmm/init/discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T12:51:00,110   copying build/lib.linux-armv7l-3.9/bhmm/init/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T12:51:00,112   copying build/lib.linux-armv7l-3.9/bhmm/init/gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/init
2021-07-10T12:51:00,114   creating build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:51:00,115   copying build/lib.linux-armv7l-3.9/bhmm/util/analysis.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:51:00,118   copying build/lib.linux-armv7l-3.9/bhmm/util/testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:51:00,120   copying build/lib.linux-armv7l-3.9/bhmm/util/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:51:00,122   copying build/lib.linux-armv7l-3.9/bhmm/util/logger.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:51:00,124   copying build/lib.linux-armv7l-3.9/bhmm/util/statistics.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:51:00,126   copying build/lib.linux-armv7l-3.9/bhmm/util/config.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:51:00,128   copying build/lib.linux-armv7l-3.9/bhmm/util/types.py -> build/bdist.linux-armv7l/wheel/bhmm/util
2021-07-10T12:51:00,131   creating build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,132   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_output_gaussian.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,134   copying build/lib.linux-armv7l-3.9/bhmm/tests/benchmark_hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,137   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_bhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,140   copying build/lib.linux-armv7l-3.9/bhmm/tests/__init__.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,142   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_init_discrete.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,145   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,147   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_hidden.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,150   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_testsystems.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,153   creating build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T12:51:00,154   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_traj_100K.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T12:51:00,165   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_energy.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T12:51:00,167   copying build/lib.linux-armv7l-3.9/bhmm/tests/data/2well_P.dat -> build/bdist.linux-armv7l/wheel/bhmm/tests/data
2021-07-10T12:51:00,170   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_mlhmm_patho.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,172   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_bhmm_patho.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,174   copying build/lib.linux-armv7l-3.9/bhmm/tests/test_mlhmm.py -> build/bdist.linux-armv7l/wheel/bhmm/tests
2021-07-10T12:51:00,176   copying build/lib.linux-armv7l-3.9/bhmm/api.py -> build/bdist.linux-armv7l/wheel/bhmm
2021-07-10T12:51:00,178   running install_egg_info
2021-07-10T12:51:00,199   running egg_info
2021-07-10T12:51:00,200   writing bhmm.egg-info/PKG-INFO
2021-07-10T12:51:00,202   writing dependency_links to bhmm.egg-info/dependency_links.txt
2021-07-10T12:51:00,204   writing requirements to bhmm.egg-info/requires.txt
2021-07-10T12:51:00,205   writing top-level names to bhmm.egg-info/top_level.txt
2021-07-10T12:51:00,258   reading manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T12:51:00,263   reading manifest template 'MANIFEST.in'
2021-07-10T12:51:00,379   writing manifest file 'bhmm.egg-info/SOURCES.txt'
2021-07-10T12:51:00,380   Copying bhmm.egg-info to build/bdist.linux-armv7l/wheel/bhmm-0.6.1-py3.9.egg-info
2021-07-10T12:51:00,396   running install_scripts
2021-07-10T12:51:00,443   creating build/bdist.linux-armv7l/wheel/bhmm-0.6.1.dist-info/WHEEL
2021-07-10T12:51:00,446   creating '/tmp/pip-wheel-u0i4t5jh/bhmm-0.6.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T12:51:00,448   adding 'bhmm/__init__.py'
2021-07-10T12:51:00,452   adding 'bhmm/api.py'
2021-07-10T12:51:00,453   adding 'bhmm/version.py'
2021-07-10T12:51:00,455   adding 'bhmm/_external/__init__.py'
2021-07-10T12:51:00,456   adding 'bhmm/_external/clustering/__init__.py'
2021-07-10T12:51:00,469   adding 'bhmm/_external/clustering/kmeans_clustering.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T12:51:00,472   adding 'bhmm/_external/sklearn/__init__.py'
2021-07-10T12:51:00,473   adding 'bhmm/_external/sklearn/base.py'
2021-07-10T12:51:00,475   adding 'bhmm/_external/sklearn/utils.py'
2021-07-10T12:51:00,477   adding 'bhmm/_external/sklearn/mixture/__init__.py'
2021-07-10T12:51:00,481   adding 'bhmm/_external/sklearn/mixture/gmm.py'
2021-07-10T12:51:00,482   adding 'bhmm/estimators/__init__.py'
2021-07-10T12:51:00,484   adding 'bhmm/estimators/_tmatrix_disconnected.py'
2021-07-10T12:51:00,486   adding 'bhmm/estimators/bayesian_sampling.py'
2021-07-10T12:51:00,489   adding 'bhmm/estimators/maximum_likelihood.py'
2021-07-10T12:51:00,491   adding 'bhmm/hidden/__init__.py'
2021-07-10T12:51:00,492   adding 'bhmm/hidden/api.py'
2021-07-10T12:51:00,494   adding 'bhmm/hidden/impl_c/__init__.py'
2021-07-10T12:51:00,582   adding 'bhmm/hidden/impl_c/hidden.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T12:51:00,587   adding 'bhmm/hidden/impl_python/__init__.py'
2021-07-10T12:51:00,589   adding 'bhmm/hidden/impl_python/hidden.py'
2021-07-10T12:51:00,591   adding 'bhmm/hmm/__init__.py'
2021-07-10T12:51:00,592   adding 'bhmm/hmm/discrete_hmm.py'
2021-07-10T12:51:00,593   adding 'bhmm/hmm/gaussian_hmm.py'
2021-07-10T12:51:00,596   adding 'bhmm/hmm/generic_hmm.py'
2021-07-10T12:51:00,597   adding 'bhmm/hmm/generic_sampled_hmm.py'
2021-07-10T12:51:00,599   adding 'bhmm/init/__init__.py'
2021-07-10T12:51:00,601   adding 'bhmm/init/discrete.py'
2021-07-10T12:51:00,602   adding 'bhmm/init/gaussian.py'
2021-07-10T12:51:00,604   adding 'bhmm/output_models/__init__.py'
2021-07-10T12:51:00,606   adding 'bhmm/output_models/discrete.py'
2021-07-10T12:51:00,608   adding 'bhmm/output_models/gaussian.py'
2021-07-10T12:51:00,610   adding 'bhmm/output_models/outputmodel.py'
2021-07-10T12:51:00,612   adding 'bhmm/output_models/impl_c/__init__.py'
2021-07-10T12:51:00,643   adding 'bhmm/output_models/impl_c/discrete.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T12:51:00,714   adding 'bhmm/output_models/impl_c/gaussian.cpython-39-arm-linux-gnueabihf.so'
2021-07-10T12:51:00,718   adding 'bhmm/tests/__init__.py'
2021-07-10T12:51:00,719   adding 'bhmm/tests/benchmark_hidden.py'
2021-07-10T12:51:00,721   adding 'bhmm/tests/test_bhmm.py'
2021-07-10T12:51:00,722   adding 'bhmm/tests/test_bhmm_patho.py'
2021-07-10T12:51:00,724   adding 'bhmm/tests/test_hidden.py'
2021-07-10T12:51:00,725   adding 'bhmm/tests/test_hmm.py'
2021-07-10T12:51:00,727   adding 'bhmm/tests/test_init_discrete.py'
2021-07-10T12:51:00,728   adding 'bhmm/tests/test_mlhmm.py'
2021-07-10T12:51:00,729   adding 'bhmm/tests/test_mlhmm_patho.py'
2021-07-10T12:51:00,730   adding 'bhmm/tests/test_output_gaussian.py'
2021-07-10T12:51:00,732   adding 'bhmm/tests/test_testsystems.py'
2021-07-10T12:51:00,734   adding 'bhmm/tests/data/2well_P.dat'
2021-07-10T12:51:00,735   adding 'bhmm/tests/data/2well_energy.dat'
2021-07-10T12:51:00,809   adding 'bhmm/tests/data/2well_traj_100K.dat'
2021-07-10T12:51:00,813   adding 'bhmm/util/__init__.py'
2021-07-10T12:51:00,814   adding 'bhmm/util/analysis.py'
2021-07-10T12:51:00,816   adding 'bhmm/util/config.py'
2021-07-10T12:51:00,817   adding 'bhmm/util/logger.py'
2021-07-10T12:51:00,818   adding 'bhmm/util/statistics.py'
2021-07-10T12:51:00,820   adding 'bhmm/util/testsystems.py'
2021-07-10T12:51:00,822   adding 'bhmm/util/types.py'
2021-07-10T12:51:00,824   adding 'bhmm-0.6.1.dist-info/METADATA'
2021-07-10T12:51:00,825   adding 'bhmm-0.6.1.dist-info/WHEEL'
2021-07-10T12:51:00,825   adding 'bhmm-0.6.1.dist-info/pbr.json'
2021-07-10T12:51:00,826   adding 'bhmm-0.6.1.dist-info/top_level.txt'
2021-07-10T12:51:00,827   adding 'bhmm-0.6.1.dist-info/RECORD'
2021-07-10T12:51:00,838   removing build/bdist.linux-armv7l/wheel
2021-07-10T12:51:01,006   Building wheel for bhmm (setup.py): finished with status 'done'
2021-07-10T12:51:01,015   Created wheel for bhmm: filename=bhmm-0.6.1-cp39-cp39-linux_armv7l.whl size=537018 sha256=bdde2fb855e13c3cdf17d9cd584f787f701e5f0702e9dab89fb3a6cf47cae083
2021-07-10T12:51:01,015   Stored in directory: /tmp/pip-ephem-wheel-cache-ct4vahna/wheels/91/3b/c7/c280e6cd14673db67f61a090f83cad73031ae6b81486f38ada
2021-07-10T12:51:01,027 Successfully built bhmm
2021-07-10T12:51:01,050 Removed build tracker: '/tmp/pip-req-tracker-7mpe2q7y'