2021-07-10T12:58:47,727 Created temporary directory: /tmp/pip-ephem-wheel-cache-9we_sspk
2021-07-10T12:58:47,730 Created temporary directory: /tmp/pip-req-tracker-xu27tnb_
2021-07-10T12:58:47,731 Initialized build tracking at /tmp/pip-req-tracker-xu27tnb_
2021-07-10T12:58:47,731 Created build tracker: /tmp/pip-req-tracker-xu27tnb_
2021-07-10T12:58:47,731 Entered build tracker: /tmp/pip-req-tracker-xu27tnb_
2021-07-10T12:58:47,732 Created temporary directory: /tmp/pip-wheel-lvzzxrgg
2021-07-10T12:58:47,766 1 location(s) to search for versions of dark-matter:
2021-07-10T12:58:47,766 * https://pypi.org/simple/dark-matter/
2021-07-10T12:58:47,767 Fetching project page and analyzing links: https://pypi.org/simple/dark-matter/
2021-07-10T12:58:47,767 Getting page https://pypi.org/simple/dark-matter/
2021-07-10T12:58:47,769 Found index url https://pypi.org/simple
2021-07-10T12:58:47,975   Found link https://files.pythonhosted.org/packages/7a/5d/5704534d2e83673ec3c8534b39fe1a3f071291761d421803f6b2f04ca6b3/dark-matter-1.0.0.tar.gz#sha256=e915679610d0e94ca32b047d9ef8db6bb16aca43edbba1f7ea13d8f9a00b77d7 (from https://pypi.org/simple/dark-matter/), version: 1.0.0
2021-07-10T12:58:47,975   Found link https://files.pythonhosted.org/packages/4a/50/cc5fbbe75b550d6819af04e15ffc633d99b636f2e2d3c22ca4fc09ba2380/dark-matter-1.0.11.tar.gz#sha256=4157ac389269821b5c3a2de3b32922bf437df79e858f2ae8c7293479d393c90b (from https://pypi.org/simple/dark-matter/), version: 1.0.11
2021-07-10T12:58:47,976   Found link https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861 (from https://pypi.org/simple/dark-matter/), version: 1.0.12
2021-07-10T12:58:47,976   Found link https://files.pythonhosted.org/packages/42/69/f0d13d1e43ec50d1ca85b70c27cc5333f85186668700544a7661c4d6d374/dark-matter-1.0.13.tar.gz#sha256=4b061448407711cab985c60762244028d74b32a322d7329a63138e4080d110d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.13
2021-07-10T12:58:47,976   Found link https://files.pythonhosted.org/packages/30/5a/9c56b0639b13c2c78cad8ac304e9c5d834eed0cab07d0dcd780b7be47249/dark-matter-1.0.16.tar.gz#sha256=c0c11585b9a71c47aa248794779111a9ab30c48e32e17540f95347d98ce116a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.16
2021-07-10T12:58:47,977   Found link https://files.pythonhosted.org/packages/26/8d/eb629def26e051253c4070e70dfc7c8258d513b2685fe4e92bb975b6e613/dark-matter-1.0.19.tar.gz#sha256=4944ba9c898e0b956b6a8c0b8e78e5aa91579ac469885c61e70d71e89f92883d (from https://pypi.org/simple/dark-matter/), version: 1.0.19
2021-07-10T12:58:47,977   Found link https://files.pythonhosted.org/packages/6d/6f/755f4b72e91ce15571d5884761d34627eba8dc173005bc8d41a2e4d2ec81/dark-matter-1.0.27.tar.gz#sha256=70b765fdc0932137cb1ee2b9183018261c218fd27c87a3f3ab5fabb93a9d0e3c (from https://pypi.org/simple/dark-matter/), version: 1.0.27
2021-07-10T12:58:47,977   Found link https://files.pythonhosted.org/packages/c1/41/a8cb27f9a68dd388473a594c0a5cb162fb1518d16197c357ec3617e9631c/dark-matter-1.0.32.tar.gz#sha256=405b6a4a51ac4c1660435c882fb548d1e6ad1a889779b3893bddf5f876732eef (from https://pypi.org/simple/dark-matter/), version: 1.0.32
2021-07-10T12:58:47,978   Found link https://files.pythonhosted.org/packages/26/f5/ea2b1d090cd00bb769d4e07cc4b697373c58dac65a52cf442a4f60a833ba/dark-matter-1.0.34.tar.gz#sha256=8fe1d83a0b0476164c5a4ca8197890e1936ed0d66a689870a71676a14f671539 (from https://pypi.org/simple/dark-matter/), version: 1.0.34
2021-07-10T12:58:47,978   Found link https://files.pythonhosted.org/packages/1d/a3/954c4ab15080556dbb33a1c2053ce9028b51cb160099978332b9252b5f93/dark-matter-1.0.36.tar.gz#sha256=9f639deedd5d4e4da0276c9a6780288c5d78e95b0c5b69d08b312ed10cc10d25 (from https://pypi.org/simple/dark-matter/), version: 1.0.36
2021-07-10T12:58:47,978   Found link https://files.pythonhosted.org/packages/fd/f7/352dcf1f8fb13001175a73acb52fff4bc20760300f87459d7e1e967823a1/dark-matter-1.0.38.tar.gz#sha256=b506f4177d9334da17c7fdd2054944851b96c3872be6d00cd5ece2de2ddc7d82 (from https://pypi.org/simple/dark-matter/), version: 1.0.38
2021-07-10T12:58:47,978   Found link https://files.pythonhosted.org/packages/17/94/5d0c424a52cc3d16793cef2a6b38a8a3542c4bda072c49d61efd18a1ec60/dark-matter-1.0.40.tar.gz#sha256=6e38036fc94ef7817c18d607b937b916ef1caafe40fe072d4748306b2e646a1f (from https://pypi.org/simple/dark-matter/), version: 1.0.40
2021-07-10T12:58:47,979   Found link https://files.pythonhosted.org/packages/4c/d7/9fa11fcb1f9923e3e980f1b493791ca3fbe6920a68a939971fb1eb333d05/dark-matter-1.0.41.tar.gz#sha256=e6e0364aa69a1fef4621e7d016839a3dffbcddff5d575ba4ee7f4af5cebd754d (from https://pypi.org/simple/dark-matter/), version: 1.0.41
2021-07-10T12:58:47,979   Found link https://files.pythonhosted.org/packages/1b/bb/9a2bffcc74c3bb8c2f45106443174a74dbe3424e45eb483ba7bf72da1fe2/dark-matter-1.0.42.tar.gz#sha256=2540312ed60fed3f5a52b5ec60409e712c8a562569baa132be6ab0c53edbec83 (from https://pypi.org/simple/dark-matter/), version: 1.0.42
2021-07-10T12:58:47,979   Found link https://files.pythonhosted.org/packages/e2/dd/cb0a17ce78d39d3b6d6dc93f54c49069b722569042312f7044143a67af30/dark-matter-1.0.43.tar.gz#sha256=17548e06b695864df72afb4e6664261333612b991373745f4e68f99ed48ace5f (from https://pypi.org/simple/dark-matter/), version: 1.0.43
2021-07-10T12:58:47,979   Found link https://files.pythonhosted.org/packages/88/ee/c6e7d4142ee1baca46ff0d7f295b7d5a4059648c815de4223f873f17a448/dark-matter-1.0.44.tar.gz#sha256=468d2be2ad00ddcdfafe52f09a6a8971b40964e816fdb95de2772d32879d3fc5 (from https://pypi.org/simple/dark-matter/), version: 1.0.44
2021-07-10T12:58:47,980   Found link https://files.pythonhosted.org/packages/7e/71/19001567a982f1ea235095e6f2042990e0666c343bfd985b2c2b8a6a6edc/dark-matter-1.0.45.tar.gz#sha256=b60e397a82b3183fae2cdee32ac92f43f4533bcb5a7683d5fc3e58dd6ceee4fd (from https://pypi.org/simple/dark-matter/), version: 1.0.45
2021-07-10T12:58:47,980   Found link https://files.pythonhosted.org/packages/9b/71/0395a4c77fc9443e4b1c8d6d3787d527c2d06ecf56c75db9779bb602d594/dark-matter-1.0.46.tar.gz#sha256=66aaa9872db60c407b047f5e997c8155fe0626df9222b251a6f65b15ca4d3423 (from https://pypi.org/simple/dark-matter/), version: 1.0.46
2021-07-10T12:58:47,980   Found link https://files.pythonhosted.org/packages/85/3b/b68351e5280d2f65b26ca3e225a5a0385d921a6d25cef62563eeaec42343/dark-matter-1.0.47.tar.gz#sha256=b51c372b06fe94fcc93f8795aa5d2b2a547108934cc5c429e89972cdea153baf (from https://pypi.org/simple/dark-matter/), version: 1.0.47
2021-07-10T12:58:47,981   Found link https://files.pythonhosted.org/packages/fb/4c/6e27c41b817fc86240a956472978b226008da91e8c2b2b5dd991091c3a2d/dark-matter-1.0.48.tar.gz#sha256=e9ca7aad5b5631658d2ab154108568faa6196f7cea8dfaef1881d0013a3c59bd (from https://pypi.org/simple/dark-matter/), version: 1.0.48
2021-07-10T12:58:47,981   Found link https://files.pythonhosted.org/packages/07/65/1253b1fcd6c75fbbc19eee09982ec62023742959583d6687c666befffb71/dark-matter-1.0.49.tar.gz#sha256=7fe2af86f08e9e2416869c8fa571fc79b5a6965d4e2e9624536984a6ede94d5e (from https://pypi.org/simple/dark-matter/), version: 1.0.49
2021-07-10T12:58:47,981   Found link https://files.pythonhosted.org/packages/ac/93/e94fa7a2455aa54ebc294bb5bd93c11aca3c461073aee1fab28b4ee380ae/dark-matter-1.0.50.tar.gz#sha256=cd9ce5690ff46e8a27b17505dc500d0dc065bb403d6aa731615fbcfa0e9ecb50 (from https://pypi.org/simple/dark-matter/), version: 1.0.50
2021-07-10T12:58:47,981   Found link https://files.pythonhosted.org/packages/b9/ce/7d74daae572ebb32ffdbd439440361f5bf39eb9f9d0f55654878cbd7cbb2/dark-matter-1.0.51.tar.gz#sha256=ca7762302eb529ec15dbc0bba35397dc018cb3b43b371b02495ba1caa8fc6fe2 (from https://pypi.org/simple/dark-matter/), version: 1.0.51
2021-07-10T12:58:47,982   Found link https://files.pythonhosted.org/packages/cd/fb/8ff473df5992d3cdfc57151ff5595561c42fff343fcc01c76f3b95cd1eb9/dark-matter-1.0.52.tar.gz#sha256=7c5cadd1c74c4c85d55ec808f2ecd1a86abf726b7f3dc4b8755a32dc81a57094 (from https://pypi.org/simple/dark-matter/), version: 1.0.52
2021-07-10T12:58:47,982   Found link https://files.pythonhosted.org/packages/d4/a7/8e4a7fc079ce3324a605902fb7fe865ab846ba3376408987680cc68703c7/dark-matter-1.0.53.tar.gz#sha256=c06386be8fc1f85e76fc6f7c6b8ea6597503a9c238e5368e0975f18ea9fe3f6a (from https://pypi.org/simple/dark-matter/), version: 1.0.53
2021-07-10T12:58:47,982   Found link https://files.pythonhosted.org/packages/a8/50/55d45de9c1903904647e651a955b56dff452d61f9e095a5004a149ab2eca/dark-matter-1.0.54.tar.gz#sha256=cb4fefda8208eb0d40c4b172c30286b4be960018e89c89aacb94f177cbd0a77a (from https://pypi.org/simple/dark-matter/), version: 1.0.54
2021-07-10T12:58:47,983   Found link https://files.pythonhosted.org/packages/47/41/cc272f599662d184f754abc67ee763ac9da02c5d9ef5d1155effe67d132f/dark-matter-1.0.55.tar.gz#sha256=d1b4537860411417b98b32252f8a363623c263464c32d994cd442de74e36d4d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.55
2021-07-10T12:58:47,983   Found link https://files.pythonhosted.org/packages/d3/d8/250e7506219460c7da81f6f51bf93cce13d21b461392dcbfa1311e504a95/dark-matter-1.0.56.tar.gz#sha256=d5cbddab4a2b8cc948329f46660259c2bb30b866446ddfc12e8c6b8ddc9822ff (from https://pypi.org/simple/dark-matter/), version: 1.0.56
2021-07-10T12:58:47,983   Found link https://files.pythonhosted.org/packages/81/c7/3bf4ec17c4f0e02ca7741f7ede49d58680f12b48a4a7350031ffe8b38ba1/dark-matter-1.0.57.tar.gz#sha256=3d33c771486b56c8a4dd10fb70f91e4c0ce1d279d05cbdf6dac92cceffb35809 (from https://pypi.org/simple/dark-matter/), version: 1.0.57
2021-07-10T12:58:47,983   Found link https://files.pythonhosted.org/packages/f1/d5/6e02cb418664b484f16ea42b60a86add44acf56dda4875001528957c27b2/dark-matter-1.0.58.tar.gz#sha256=6a9e75658cacc7ae7e9926d0debd5605e15e5761452455e4f65c96b3cd947c6b (from https://pypi.org/simple/dark-matter/), version: 1.0.58
2021-07-10T12:58:47,984   Found link https://files.pythonhosted.org/packages/5a/d3/a69ed2feeac3afcb852a8bcce6cadd5b541cd78de3756f0519a62ca29371/dark-matter-1.0.59.tar.gz#sha256=1f0c71e01cce5ca62b1599c974ff24b8b211349f880c365ecbdce369c6877280 (from https://pypi.org/simple/dark-matter/), version: 1.0.59
2021-07-10T12:58:47,984   Found link https://files.pythonhosted.org/packages/68/70/96bd4a89d1c5f40e05d734be94ae1571be35c0b4c4e19e22c0be893c9e1c/dark-matter-1.0.60.tar.gz#sha256=933a4cc3f34ed03198cacedaab9cc0915402bfff0ad238a0f879c7b246243f02 (from https://pypi.org/simple/dark-matter/), version: 1.0.60
2021-07-10T12:58:47,984   Found link https://files.pythonhosted.org/packages/55/52/ab50ff5d12bb5efd1171a964a4f5baa03edb0091dfa5c79af08fbbe4da16/dark-matter-1.0.61.tar.gz#sha256=09e5bdfd05c954d34fc87541f61a416169ae53daea1a22723de915a9f50ea9e4 (from https://pypi.org/simple/dark-matter/), version: 1.0.61
2021-07-10T12:58:47,984   Found link https://files.pythonhosted.org/packages/ab/de/cc9a342e642f66e60c8ff98d1786229d5cfcfb0306158f0c19ef61059303/dark-matter-1.0.62.tar.gz#sha256=6f7347e0923abd2eb2118862a03966c5204262e5d496e11900de3aed43724265 (from https://pypi.org/simple/dark-matter/), version: 1.0.62
2021-07-10T12:58:47,985   Found link https://files.pythonhosted.org/packages/cd/a5/713b8a9f25437fafe2a34291ca34f945c9e1394c2e600f73e5abd8e3282e/dark-matter-1.0.63.tar.gz#sha256=fca60020cce6b249f61f6ae5e268dbd20f71a2d257bb668c84313ca29d6873b1 (from https://pypi.org/simple/dark-matter/), version: 1.0.63
2021-07-10T12:58:47,985   Found link https://files.pythonhosted.org/packages/77/fe/320a21e0c4c116bd28487af7156a9937a90dcc44f70c4f720267e9b14291/dark-matter-1.0.64.tar.gz#sha256=d1c1764b08f3fbdf71f46a5f9acbe0deadb96d5af5b4b99d8b19e13e4abe9e3d (from https://pypi.org/simple/dark-matter/), version: 1.0.64
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2021-07-10T12:58:47,985   Found link https://files.pythonhosted.org/packages/7b/61/46caedf674111789641d78a4252b26d1ea43d3d8c77f906b3abc7c638acc/dark-matter-1.0.66.tar.gz#sha256=a0ad6f3e8afe8294c1aa5011577533334d2a6cbb16eaaa9b48a451fe0a9db293 (from https://pypi.org/simple/dark-matter/), version: 1.0.66
2021-07-10T12:58:47,986   Found link https://files.pythonhosted.org/packages/97/54/fc8129e31460a4007b2d328e37efeb55a3488b7a7a34592e0c738ac27079/dark-matter-1.0.67.tar.gz#sha256=709dbe5d0c6df732587900ea0ee3a8508fd43a37d7aff3ec5387bbee7d7917cd (from https://pypi.org/simple/dark-matter/), version: 1.0.67
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2021-07-10T12:58:48,048   Found link https://files.pythonhosted.org/packages/fe/74/37ca77e38cc0080fbe164321e7ab6be1552960f966c11c12ba6a138c1cdb/dark-matter-3.2.3.tar.gz#sha256=51d99ef9b8c7628613fed3519fac86d2575c56f4977150d0ec017a440b869692 (from https://pypi.org/simple/dark-matter/), version: 3.2.3
2021-07-10T12:58:48,048   Found link https://files.pythonhosted.org/packages/bf/8e/017b2bbd617c0e4dec88b71755855fd32a8fa54ca0c114896475378d8c10/dark-matter-3.2.4.tar.gz#sha256=1bf86c2be13ad123baff3cd4cec2443bf16ec9afca83a50da3aad256033c61e3 (from https://pypi.org/simple/dark-matter/), version: 3.2.4
2021-07-10T12:58:48,048   Found link https://files.pythonhosted.org/packages/95/55/bb9433858a72e5030fe4579502698e18fe9f21ec51f4d34a9f3f33913aed/dark-matter-3.2.5.tar.gz#sha256=1a31e2be7d17f7a47cc07b566ed2a822559fb09072efda9827666ba83d560c41 (from https://pypi.org/simple/dark-matter/), version: 3.2.5
2021-07-10T12:58:48,049   Found link https://files.pythonhosted.org/packages/31/42/f98d746754c0a92d708b8c77d5cc6156cdd264c04b850f94d4b130e573e5/dark-matter-3.2.6.tar.gz#sha256=288126f141d0ec87735c121184f06121f694e6a565df8f962aec7ec84a41058a (from https://pypi.org/simple/dark-matter/), version: 3.2.6
2021-07-10T12:58:48,049   Found link https://files.pythonhosted.org/packages/91/46/1547ccfdd762ae0eca10c8781419157a1350f009d02f1eaf0f02f4666d43/dark-matter-4.0.1.tar.gz#sha256=0bc78eb30abeb495a923f91ca67042a947c142b0bfef173c9c04168521d596bb (from https://pypi.org/simple/dark-matter/), version: 4.0.1
2021-07-10T12:58:48,049   Found link https://files.pythonhosted.org/packages/39/dc/3679eaa104a9298af74106ead1b3de2e8f4105c9762d489af4ad9f31c177/dark-matter-4.0.2.tar.gz#sha256=d7c6f9fc10eafea5539e25c54752ad038d69111889588166b9c1ea34c2fcc117 (from https://pypi.org/simple/dark-matter/), version: 4.0.2
2021-07-10T12:58:48,049   Found link https://files.pythonhosted.org/packages/89/97/e6498f8e9ec143776ae410e0ffb0c6167e66178e338662a8b159f65f8f27/dark-matter-4.0.3.tar.gz#sha256=781729df875c97b926a1e754892012ee23fe4da008e34ba596255006f2591bf9 (from https://pypi.org/simple/dark-matter/), version: 4.0.3
2021-07-10T12:58:48,050 Skipping link: not a file: https://pypi.org/simple/dark-matter/
2021-07-10T12:58:48,104 Given no hashes to check 1 links for project 'dark-matter': discarding no candidates
2021-07-10T12:58:48,125 Collecting dark-matter==1.0.12
2021-07-10T12:58:48,127   Created temporary directory: /tmp/pip-unpack-o5ct8uzs
2021-07-10T12:58:48,365   Downloading dark-matter-1.0.12.tar.gz (186 kB)
2021-07-10T12:58:48,734   Added dark-matter==1.0.12 from https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861 to build tracker '/tmp/pip-req-tracker-xu27tnb_'
2021-07-10T12:58:48,735     Running setup.py (path:/tmp/pip-wheel-lvzzxrgg/dark-matter_86227d229ec94fcf85f19fe99f1f1411/setup.py) egg_info for package dark-matter
2021-07-10T12:58:48,735     Created temporary directory: /tmp/pip-pip-egg-info-qfw178fe
2021-07-10T12:58:48,736     Running command python setup.py egg_info
2021-07-10T12:58:49,878     running egg_info
2021-07-10T12:58:49,881     creating /tmp/pip-pip-egg-info-qfw178fe/dark_matter.egg-info
2021-07-10T12:58:49,882     writing /tmp/pip-pip-egg-info-qfw178fe/dark_matter.egg-info/PKG-INFO
2021-07-10T12:58:49,885     writing dependency_links to /tmp/pip-pip-egg-info-qfw178fe/dark_matter.egg-info/dependency_links.txt
2021-07-10T12:58:49,888     writing requirements to /tmp/pip-pip-egg-info-qfw178fe/dark_matter.egg-info/requires.txt
2021-07-10T12:58:49,889     writing top-level names to /tmp/pip-pip-egg-info-qfw178fe/dark_matter.egg-info/top_level.txt
2021-07-10T12:58:49,894     writing manifest file '/tmp/pip-pip-egg-info-qfw178fe/dark_matter.egg-info/SOURCES.txt'
2021-07-10T12:58:50,331     reading manifest file '/tmp/pip-pip-egg-info-qfw178fe/dark_matter.egg-info/SOURCES.txt'
2021-07-10T12:58:50,333     reading manifest template 'MANIFEST.in'
2021-07-10T12:58:50,345     writing manifest file '/tmp/pip-pip-egg-info-qfw178fe/dark_matter.egg-info/SOURCES.txt'
2021-07-10T12:58:50,439   Source in /tmp/pip-wheel-lvzzxrgg/dark-matter_86227d229ec94fcf85f19fe99f1f1411 has version 1.0.12, which satisfies requirement dark-matter==1.0.12 from https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861
2021-07-10T12:58:50,440   Removed dark-matter==1.0.12 from https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861 from build tracker '/tmp/pip-req-tracker-xu27tnb_'
2021-07-10T12:58:50,444 Created temporary directory: /tmp/pip-unpack-tjan6g7w
2021-07-10T12:58:50,445 Building wheels for collected packages: dark-matter
2021-07-10T12:58:50,449   Created temporary directory: /tmp/pip-wheel-m1cnj64i
2021-07-10T12:58:50,450   Building wheel for dark-matter (setup.py): started
2021-07-10T12:58:50,450   Destination directory: /tmp/pip-wheel-m1cnj64i
2021-07-10T12:58:50,450   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-lvzzxrgg/dark-matter_86227d229ec94fcf85f19fe99f1f1411/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-lvzzxrgg/dark-matter_86227d229ec94fcf85f19fe99f1f1411/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-m1cnj64i
2021-07-10T12:58:51,567   running bdist_wheel
2021-07-10T12:58:51,571   running build
2021-07-10T12:58:51,572   running build_py
2021-07-10T12:58:51,712   creating build
2021-07-10T12:58:51,713   creating build/lib.linux-armv7l-3.9
2021-07-10T12:58:51,713   creating build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,714   copying dark/ipynb.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,716   copying dark/fasta.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,718   copying dark/aa.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,721   copying dark/baseimage.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,722   copying dark/hsp.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,725   copying dark/entrez.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,726   copying dark/distance.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,728   copying dark/ncbidb.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,730   copying dark/codonDistance.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,732   copying dark/taxonomy.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,734   copying dark/titles.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,736   copying dark/gor4.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,738   copying dark/features.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,740   copying dark/html.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,743   copying dark/local_align.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,745   copying dark/consensus.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,748   copying dark/reads.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,751   copying dark/fastq.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,753   copying dark/analyze_reads.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,755   copying dark/summarize.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,756   copying dark/intervals.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,759   copying dark/orfs.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,761   copying dark/database.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,763   copying dark/filter.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,765   copying dark/graphics.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,768   copying dark/simplify.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,770   copying dark/mutations.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,773   copying dark/utils.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,775   copying dark/dimension.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,777   copying dark/sequence.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,779   copying dark/alignments.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,782   copying dark/__init__.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,784   copying dark/score.py -> build/lib.linux-armv7l-3.9/dark
2021-07-10T12:58:51,786   running egg_info
2021-07-10T12:58:51,801   writing dark_matter.egg-info/PKG-INFO
2021-07-10T12:58:51,803   writing dependency_links to dark_matter.egg-info/dependency_links.txt
2021-07-10T12:58:51,805   writing requirements to dark_matter.egg-info/requires.txt
2021-07-10T12:58:51,806   writing top-level names to dark_matter.egg-info/top_level.txt
2021-07-10T12:58:51,857   reading manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-07-10T12:58:51,863   reading manifest template 'MANIFEST.in'
2021-07-10T12:58:51,874   writing manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-07-10T12:58:51,878   creating build/lib.linux-armv7l-3.9/dark/data
2021-07-10T12:58:51,878   creating build/lib.linux-armv7l-3.9/dark/data/gor4
2021-07-10T12:58:51,879   copying dark/data/gor4/New_KS.267.obs -> build/lib.linux-armv7l-3.9/dark/data/gor4
2021-07-10T12:58:51,884   copying dark/data/gor4/New_KS.267.seq -> build/lib.linux-armv7l-3.9/dark/data/gor4
2021-07-10T12:58:51,890   running build_ext
2021-07-10T12:58:51,890   generating cffi module 'build/temp.linux-armv7l-3.9/dark._gor4.c'
2021-07-10T12:58:51,891   creating build/temp.linux-armv7l-3.9
2021-07-10T12:58:51,908   building 'dark._gor4' extension
2021-07-10T12:58:51,908   creating build/temp.linux-armv7l-3.9/build
2021-07-10T12:58:51,908   creating build/temp.linux-armv7l-3.9/build/temp.linux-armv7l-3.9
2021-07-10T12:58:51,909   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c build/temp.linux-armv7l-3.9/dark._gor4.c -o build/temp.linux-armv7l-3.9/build/temp.linux-armv7l-3.9/dark._gor4.o
2021-07-10T12:58:52,306   build/temp.linux-armv7l-3.9/dark._gor4.c:628:22: warning: ‘iminarg2’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,306     628 | static int iminarg1, iminarg2;
2021-07-10T12:58:52,306         |                      ^~~~~~~~
2021-07-10T12:58:52,307   build/temp.linux-armv7l-3.9/dark._gor4.c:628:12: warning: ‘iminarg1’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,307     628 | static int iminarg1, iminarg2;
2021-07-10T12:58:52,307         |            ^~~~~~~~
2021-07-10T12:58:52,307   build/temp.linux-armv7l-3.9/dark._gor4.c:625:22: warning: ‘imaxarg2’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,307     625 | static int imaxarg1, imaxarg2;
2021-07-10T12:58:52,307         |                      ^~~~~~~~
2021-07-10T12:58:52,308   build/temp.linux-armv7l-3.9/dark._gor4.c:625:12: warning: ‘imaxarg1’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,308     625 | static int imaxarg1, imaxarg2;
2021-07-10T12:58:52,308         |            ^~~~~~~~
2021-07-10T12:58:52,308   build/temp.linux-armv7l-3.9/dark._gor4.c:622:23: warning: ‘lminarg2’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,308     622 | static long lminarg1, lminarg2;
2021-07-10T12:58:52,309         |                       ^~~~~~~~
2021-07-10T12:58:52,309   build/temp.linux-armv7l-3.9/dark._gor4.c:622:13: warning: ‘lminarg1’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,309     622 | static long lminarg1, lminarg2;
2021-07-10T12:58:52,309         |             ^~~~~~~~
2021-07-10T12:58:52,309   build/temp.linux-armv7l-3.9/dark._gor4.c:619:23: warning: ‘lmaxarg2’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,309     619 | static long lmaxarg1, lmaxarg2;
2021-07-10T12:58:52,310         |                       ^~~~~~~~
2021-07-10T12:58:52,310   build/temp.linux-armv7l-3.9/dark._gor4.c:619:13: warning: ‘lmaxarg1’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,310     619 | static long lmaxarg1, lmaxarg2;
2021-07-10T12:58:52,310         |             ^~~~~~~~
2021-07-10T12:58:52,310   build/temp.linux-armv7l-3.9/dark._gor4.c:616:23: warning: ‘minarg2’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,310     616 | static float minarg1, minarg2;
2021-07-10T12:58:52,311         |                       ^~~~~~~
2021-07-10T12:58:52,311   build/temp.linux-armv7l-3.9/dark._gor4.c:616:14: warning: ‘minarg1’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,311     616 | static float minarg1, minarg2;
2021-07-10T12:58:52,311         |              ^~~~~~~
2021-07-10T12:58:52,311   build/temp.linux-armv7l-3.9/dark._gor4.c:613:23: warning: ‘maxarg2’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,311     613 | static float maxarg1, maxarg2;
2021-07-10T12:58:52,312         |                       ^~~~~~~
2021-07-10T12:58:52,312   build/temp.linux-armv7l-3.9/dark._gor4.c:613:14: warning: ‘maxarg1’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,312     613 | static float maxarg1, maxarg2;
2021-07-10T12:58:52,312         |              ^~~~~~~
2021-07-10T12:58:52,312   build/temp.linux-armv7l-3.9/dark._gor4.c:610:25: warning: ‘dminarg2’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,313     610 | static double dminarg1, dminarg2;
2021-07-10T12:58:52,313         |                         ^~~~~~~~
2021-07-10T12:58:52,313   build/temp.linux-armv7l-3.9/dark._gor4.c:610:15: warning: ‘dminarg1’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,313     610 | static double dminarg1, dminarg2;
2021-07-10T12:58:52,313         |               ^~~~~~~~
2021-07-10T12:58:52,313   build/temp.linux-armv7l-3.9/dark._gor4.c:607:25: warning: ‘dmaxarg2’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,314     607 | static double dmaxarg1, dmaxarg2;
2021-07-10T12:58:52,314         |                         ^~~~~~~~
2021-07-10T12:58:52,314   build/temp.linux-armv7l-3.9/dark._gor4.c:607:15: warning: ‘dmaxarg1’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,314     607 | static double dmaxarg1, dmaxarg2;
2021-07-10T12:58:52,314         |               ^~~~~~~~
2021-07-10T12:58:52,314   build/temp.linux-armv7l-3.9/dark._gor4.c:604:15: warning: ‘dsqrarg’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,315     604 | static double dsqrarg;
2021-07-10T12:58:52,315         |               ^~~~~~~
2021-07-10T12:58:52,315   build/temp.linux-armv7l-3.9/dark._gor4.c:601:14: warning: ‘sqrarg’ defined but not used [-Wunused-variable]
2021-07-10T12:58:52,315     601 | static float sqrarg;
2021-07-10T12:58:52,315         |              ^~~~~~
2021-07-10T12:58:53,413   build/temp.linux-armv7l-3.9/dark._gor4.c: In function ‘Second_Pass’:
2021-07-10T12:58:53,414   build/temp.linux-armv7l-3.9/dark._gor4.c:1935:22: warning: ‘KeepCterm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T12:58:53,415    1935 |    pred[ires1] = conf[KeepCterm];
2021-07-10T12:58:53,415         |                  ~~~~^~~~~~~~~~~
2021-07-10T12:58:53,416   build/temp.linux-armv7l-3.9/dark._gor4.c:1933:22: warning: ‘KeepNterm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T12:58:53,416    1933 |    pred[ires1] = conf[KeepNterm];
2021-07-10T12:58:53,416         |                  ~~~~^~~~~~~~~~~
2021-07-10T12:58:53,417   build/temp.linux-armv7l-3.9/dark._gor4.c:1934:2: warning: ‘Lim4’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T12:58:53,417    1934 |  for(ires1 = Lim3; ires1 <= Lim4; ires1++)
2021-07-10T12:58:53,417         |  ^~~
2021-07-10T12:58:53,418   build/temp.linux-armv7l-3.9/dark._gor4.c:1860:43: warning: ‘Lim3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T12:58:53,419    1860 |   int lim1, lim2, lim3, lim4, Lim1, Lim2, Lim3, Lim4, KeepNterm, KeepCterm;
2021-07-10T12:58:53,419         |                                           ^~~~
2021-07-10T12:58:53,420   build/temp.linux-armv7l-3.9/dark._gor4.c:1932:2: warning: ‘Lim2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T12:58:53,420    1932 |  for(ires1 = Lim1; ires1 <= Lim2; ires1++)
2021-07-10T12:58:53,420         |  ^~~
2021-07-10T12:58:53,421   build/temp.linux-armv7l-3.9/dark._gor4.c:1860:31: warning: ‘Lim1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-10T12:58:53,421    1860 |   int lim1, lim2, lim3, lim4, Lim1, Lim2, Lim3, Lim4, KeepNterm, KeepCterm;
2021-07-10T12:58:53,421         |                               ^~~~
2021-07-10T12:58:54,157   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/build/temp.linux-armv7l-3.9/dark._gor4.o -o build/lib.linux-armv7l-3.9/dark/_gor4.abi3.so
2021-07-10T12:58:54,271   running build_scripts
2021-07-10T12:58:54,272   creating build/scripts-3.9
2021-07-10T12:58:54,273   copying and adjusting bin/aa-info.py -> build/scripts-3.9
2021-07-10T12:58:54,275   copying and adjusting bin/aa-to-properties.py -> build/scripts-3.9
2021-07-10T12:58:54,276   copying and adjusting bin/adaptor-distances.py -> build/scripts-3.9
2021-07-10T12:58:54,277   copying and adjusting bin/alignments-per-read.py -> build/scripts-3.9
2021-07-10T12:58:54,278   copying and adjusting bin/bit-score-to-e-value.py -> build/scripts-3.9
2021-07-10T12:58:54,279   copying and adjusting bin/cat-json-blast-records.py -> build/scripts-3.9
2021-07-10T12:58:54,281   copying and adjusting bin/check-fasta-json-blast-consistency.py -> build/scripts-3.9
2021-07-10T12:58:54,282   copying and adjusting bin/codon-distance.py -> build/scripts-3.9
2021-07-10T12:58:54,283   copying and adjusting bin/convert-blast-xml-to-json.py -> build/scripts-3.9
2021-07-10T12:58:54,284   copying and adjusting bin/convert-fasta-to-one-sequence-per-line.py -> build/scripts-3.9
2021-07-10T12:58:54,286   copying and adjusting bin/convert-fastq-to-fasta.py -> build/scripts-3.9
2021-07-10T12:58:54,288   copying bin/convert-sam-to-fastq.sh -> build/scripts-3.9
2021-07-10T12:58:54,290   copying and adjusting bin/dna-to-aa.py -> build/scripts-3.9
2021-07-10T12:58:54,292   copying and adjusting bin/e-value-to-bit-score.py -> build/scripts-3.9
2021-07-10T12:58:54,294   copying and adjusting bin/extract-ORFs.py -> build/scripts-3.9
2021-07-10T12:58:54,296   copying and adjusting bin/fasta-subset.py -> build/scripts-3.9
2021-07-10T12:58:54,297   copying and adjusting bin/fasta-subtraction.py -> build/scripts-3.9
2021-07-10T12:58:54,299   copying and adjusting bin/filter-fasta-by-complexity.py -> build/scripts-3.9
2021-07-10T12:58:54,301   copying and adjusting bin/filter-fasta-by-taxonomy.py -> build/scripts-3.9
2021-07-10T12:58:54,302   copying and adjusting bin/filter-fasta.py -> build/scripts-3.9
2021-07-10T12:58:54,304   copying and adjusting bin/filter-hits-to-fasta.py -> build/scripts-3.9
2021-07-10T12:58:54,307   copying and adjusting bin/find-hits.py -> build/scripts-3.9
2021-07-10T12:58:54,308   copying and adjusting bin/get-features.py -> build/scripts-3.9
2021-07-10T12:58:54,310   copying and adjusting bin/get-reads.py -> build/scripts-3.9
2021-07-10T12:58:54,312   copying and adjusting bin/graph-evalues.py -> build/scripts-3.9
2021-07-10T12:58:54,313   copying and adjusting bin/local-align.py -> build/scripts-3.9
2021-07-10T12:58:54,315   copying and adjusting bin/noninteractive-alignment-panel.py -> build/scripts-3.9
2021-07-10T12:58:54,317   copying and adjusting bin/position-summary.py -> build/scripts-3.9
2021-07-10T12:58:54,319   copying bin/pre-commit.sh -> build/scripts-3.9
2021-07-10T12:58:54,320   copying and adjusting bin/print-blast-xml-for-derek.py -> build/scripts-3.9
2021-07-10T12:58:54,322   copying and adjusting bin/print-blast-xml.py -> build/scripts-3.9
2021-07-10T12:58:54,323   copying and adjusting bin/print-read-lengths.py -> build/scripts-3.9
2021-07-10T12:58:54,325   copying and adjusting bin/randomize-fasta.py -> build/scripts-3.9
2021-07-10T12:58:54,326   copying and adjusting bin/read-blast-json.py -> build/scripts-3.9
2021-07-10T12:58:54,327   copying and adjusting bin/read-blast-xml.py -> build/scripts-3.9
2021-07-10T12:58:54,329   copying and adjusting bin/sff-to-fastq.py -> build/scripts-3.9
2021-07-10T12:58:54,330   copying and adjusting bin/split-fasta-by-adaptors.py -> build/scripts-3.9
2021-07-10T12:58:54,332   copying and adjusting bin/summarize-reads.py -> build/scripts-3.9
2021-07-10T12:58:54,333   copying and adjusting bin/trim-primers.py -> build/scripts-3.9
2021-07-10T12:58:54,335   copying and adjusting bin/trim-reads.py -> build/scripts-3.9
2021-07-10T12:58:54,336   copying and adjusting bin/write-htcondor-job-spec.py -> build/scripts-3.9
2021-07-10T12:58:54,338   changing mode of build/scripts-3.9/aa-info.py from 644 to 755
2021-07-10T12:58:54,339   changing mode of build/scripts-3.9/aa-to-properties.py from 644 to 755
2021-07-10T12:58:54,339   changing mode of build/scripts-3.9/adaptor-distances.py from 644 to 755
2021-07-10T12:58:54,339   changing mode of build/scripts-3.9/alignments-per-read.py from 644 to 755
2021-07-10T12:58:54,339   changing mode of build/scripts-3.9/bit-score-to-e-value.py from 644 to 755
2021-07-10T12:58:54,340   changing mode of build/scripts-3.9/cat-json-blast-records.py from 644 to 755
2021-07-10T12:58:54,340   changing mode of build/scripts-3.9/check-fasta-json-blast-consistency.py from 644 to 755
2021-07-10T12:58:54,340   changing mode of build/scripts-3.9/codon-distance.py from 644 to 755
2021-07-10T12:58:54,341   changing mode of build/scripts-3.9/convert-blast-xml-to-json.py from 644 to 755
2021-07-10T12:58:54,341   changing mode of build/scripts-3.9/convert-fasta-to-one-sequence-per-line.py from 644 to 755
2021-07-10T12:58:54,341   changing mode of build/scripts-3.9/convert-fastq-to-fasta.py from 644 to 755
2021-07-10T12:58:54,341   changing mode of build/scripts-3.9/dna-to-aa.py from 644 to 755
2021-07-10T12:58:54,342   changing mode of build/scripts-3.9/e-value-to-bit-score.py from 644 to 755
2021-07-10T12:58:54,342   changing mode of build/scripts-3.9/extract-ORFs.py from 644 to 755
2021-07-10T12:58:54,342   changing mode of build/scripts-3.9/fasta-subset.py from 644 to 755
2021-07-10T12:58:54,342   changing mode of build/scripts-3.9/fasta-subtraction.py from 644 to 755
2021-07-10T12:58:54,343   changing mode of build/scripts-3.9/filter-fasta-by-complexity.py from 644 to 755
2021-07-10T12:58:54,343   changing mode of build/scripts-3.9/filter-fasta-by-taxonomy.py from 644 to 755
2021-07-10T12:58:54,343   changing mode of build/scripts-3.9/filter-fasta.py from 644 to 755
2021-07-10T12:58:54,343   changing mode of build/scripts-3.9/filter-hits-to-fasta.py from 644 to 755
2021-07-10T12:58:54,344   changing mode of build/scripts-3.9/find-hits.py from 644 to 755
2021-07-10T12:58:54,344   changing mode of build/scripts-3.9/get-features.py from 644 to 755
2021-07-10T12:58:54,344   changing mode of build/scripts-3.9/get-reads.py from 644 to 755
2021-07-10T12:58:54,345   changing mode of build/scripts-3.9/graph-evalues.py from 644 to 755
2021-07-10T12:58:54,345   changing mode of build/scripts-3.9/local-align.py from 644 to 755
2021-07-10T12:58:54,345   changing mode of build/scripts-3.9/noninteractive-alignment-panel.py from 644 to 755
2021-07-10T12:58:54,345   changing mode of build/scripts-3.9/position-summary.py from 644 to 755
2021-07-10T12:58:54,346   changing mode of build/scripts-3.9/print-blast-xml-for-derek.py from 644 to 755
2021-07-10T12:58:54,346   changing mode of build/scripts-3.9/print-blast-xml.py from 644 to 755
2021-07-10T12:58:54,346   changing mode of build/scripts-3.9/print-read-lengths.py from 644 to 755
2021-07-10T12:58:54,346   changing mode of build/scripts-3.9/randomize-fasta.py from 644 to 755
2021-07-10T12:58:54,347   changing mode of build/scripts-3.9/read-blast-json.py from 644 to 755
2021-07-10T12:58:54,347   changing mode of build/scripts-3.9/read-blast-xml.py from 644 to 755
2021-07-10T12:58:54,347   changing mode of build/scripts-3.9/sff-to-fastq.py from 644 to 755
2021-07-10T12:58:54,347   changing mode of build/scripts-3.9/split-fasta-by-adaptors.py from 644 to 755
2021-07-10T12:58:54,348   changing mode of build/scripts-3.9/summarize-reads.py from 644 to 755
2021-07-10T12:58:54,348   changing mode of build/scripts-3.9/trim-primers.py from 644 to 755
2021-07-10T12:58:54,348   changing mode of build/scripts-3.9/trim-reads.py from 644 to 755
2021-07-10T12:58:54,348   changing mode of build/scripts-3.9/write-htcondor-job-spec.py from 644 to 755
2021-07-10T12:58:54,356   installing to build/bdist.linux-armv7l/wheel
2021-07-10T12:58:54,356   running install
2021-07-10T12:58:54,358   running install_lib
2021-07-10T12:58:54,362   creating build/bdist.linux-armv7l
2021-07-10T12:58:54,362   creating build/bdist.linux-armv7l/wheel
2021-07-10T12:58:54,365   creating build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,366   copying build/lib.linux-armv7l-3.9/dark/ipynb.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,368   copying build/lib.linux-armv7l-3.9/dark/_gor4.abi3.so -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,373   copying build/lib.linux-armv7l-3.9/dark/fasta.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,375   copying build/lib.linux-armv7l-3.9/dark/aa.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,377   copying build/lib.linux-armv7l-3.9/dark/baseimage.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,379   copying build/lib.linux-armv7l-3.9/dark/hsp.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,381   copying build/lib.linux-armv7l-3.9/dark/entrez.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,383   copying build/lib.linux-armv7l-3.9/dark/distance.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,385   copying build/lib.linux-armv7l-3.9/dark/ncbidb.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,387   copying build/lib.linux-armv7l-3.9/dark/codonDistance.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,388   copying build/lib.linux-armv7l-3.9/dark/taxonomy.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,391   copying build/lib.linux-armv7l-3.9/dark/titles.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,393   copying build/lib.linux-armv7l-3.9/dark/gor4.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,396   copying build/lib.linux-armv7l-3.9/dark/features.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,398   copying build/lib.linux-armv7l-3.9/dark/html.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,401   copying build/lib.linux-armv7l-3.9/dark/local_align.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,404   copying build/lib.linux-armv7l-3.9/dark/consensus.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,407   copying build/lib.linux-armv7l-3.9/dark/reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,410   copying build/lib.linux-armv7l-3.9/dark/fastq.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,411   copying build/lib.linux-armv7l-3.9/dark/analyze_reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,413   copying build/lib.linux-armv7l-3.9/dark/summarize.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,415   copying build/lib.linux-armv7l-3.9/dark/intervals.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,418   copying build/lib.linux-armv7l-3.9/dark/orfs.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,420   copying build/lib.linux-armv7l-3.9/dark/database.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,421   copying build/lib.linux-armv7l-3.9/dark/filter.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,424   copying build/lib.linux-armv7l-3.9/dark/graphics.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,428   creating build/bdist.linux-armv7l/wheel/dark/data
2021-07-10T12:58:54,430   creating build/bdist.linux-armv7l/wheel/dark/data/gor4
2021-07-10T12:58:54,431   copying build/lib.linux-armv7l-3.9/dark/data/gor4/New_KS.267.seq -> build/bdist.linux-armv7l/wheel/dark/data/gor4
2021-07-10T12:58:54,436   copying build/lib.linux-armv7l-3.9/dark/data/gor4/New_KS.267.obs -> build/bdist.linux-armv7l/wheel/dark/data/gor4
2021-07-10T12:58:54,442   copying build/lib.linux-armv7l-3.9/dark/simplify.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,445   copying build/lib.linux-armv7l-3.9/dark/mutations.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,448   copying build/lib.linux-armv7l-3.9/dark/utils.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,450   copying build/lib.linux-armv7l-3.9/dark/dimension.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,452   copying build/lib.linux-armv7l-3.9/dark/sequence.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,454   copying build/lib.linux-armv7l-3.9/dark/alignments.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,457   copying build/lib.linux-armv7l-3.9/dark/__init__.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,459   copying build/lib.linux-armv7l-3.9/dark/score.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-10T12:58:54,460   running install_egg_info
2021-07-10T12:58:54,466   Copying dark_matter.egg-info to build/bdist.linux-armv7l/wheel/dark_matter-1.0.12-py3.9.egg-info
2021-07-10T12:58:54,477   running install_scripts
2021-07-10T12:58:54,541   creating build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data
2021-07-10T12:58:54,542   creating build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,543   copying build/scripts-3.9/adaptor-distances.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,544   copying build/scripts-3.9/get-features.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,546   copying build/scripts-3.9/split-fasta-by-adaptors.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,548   copying build/scripts-3.9/fasta-subset.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,550   copying build/scripts-3.9/print-blast-xml-for-derek.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,551   copying build/scripts-3.9/noninteractive-alignment-panel.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,554   copying build/scripts-3.9/filter-fasta-by-complexity.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,555   copying build/scripts-3.9/cat-json-blast-records.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,557   copying build/scripts-3.9/local-align.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,559   copying build/scripts-3.9/filter-fasta-by-taxonomy.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,561   copying build/scripts-3.9/print-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,563   copying build/scripts-3.9/print-read-lengths.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,565   copying build/scripts-3.9/e-value-to-bit-score.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,566   copying build/scripts-3.9/alignments-per-read.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,568   copying build/scripts-3.9/write-htcondor-job-spec.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,571   copying build/scripts-3.9/trim-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,572   copying build/scripts-3.9/find-hits.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,574   copying build/scripts-3.9/filter-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,576   copying build/scripts-3.9/aa-to-properties.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,578   copying build/scripts-3.9/check-fasta-json-blast-consistency.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,580   copying build/scripts-3.9/convert-sam-to-fastq.sh -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,582   copying build/scripts-3.9/fasta-subtraction.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,584   copying build/scripts-3.9/randomize-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,586   copying build/scripts-3.9/convert-fastq-to-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,588   copying build/scripts-3.9/filter-hits-to-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,590   copying build/scripts-3.9/trim-primers.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,592   copying build/scripts-3.9/graph-evalues.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,594   copying build/scripts-3.9/aa-info.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,596   copying build/scripts-3.9/convert-blast-xml-to-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,598   copying build/scripts-3.9/position-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,600   copying build/scripts-3.9/summarize-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,602   copying build/scripts-3.9/read-blast-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,604   copying build/scripts-3.9/dna-to-aa.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,606   copying build/scripts-3.9/pre-commit.sh -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,608   copying build/scripts-3.9/codon-distance.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,610   copying build/scripts-3.9/extract-ORFs.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,612   copying build/scripts-3.9/bit-score-to-e-value.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,613   copying build/scripts-3.9/convert-fasta-to-one-sequence-per-line.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,615   copying build/scripts-3.9/sff-to-fastq.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,617   copying build/scripts-3.9/get-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,620   copying build/scripts-3.9/read-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts
2021-07-10T12:58:54,621   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/adaptor-distances.py to 755
2021-07-10T12:58:54,622   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/get-features.py to 755
2021-07-10T12:58:54,622   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/split-fasta-by-adaptors.py to 755
2021-07-10T12:58:54,622   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/fasta-subset.py to 755
2021-07-10T12:58:54,622   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/print-blast-xml-for-derek.py to 755
2021-07-10T12:58:54,623   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/noninteractive-alignment-panel.py to 755
2021-07-10T12:58:54,623   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/filter-fasta-by-complexity.py to 755
2021-07-10T12:58:54,623   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/cat-json-blast-records.py to 755
2021-07-10T12:58:54,624   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/local-align.py to 755
2021-07-10T12:58:54,624   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/filter-fasta-by-taxonomy.py to 755
2021-07-10T12:58:54,624   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/print-blast-xml.py to 755
2021-07-10T12:58:54,624   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/print-read-lengths.py to 755
2021-07-10T12:58:54,625   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/e-value-to-bit-score.py to 755
2021-07-10T12:58:54,625   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/alignments-per-read.py to 755
2021-07-10T12:58:54,625   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/write-htcondor-job-spec.py to 755
2021-07-10T12:58:54,626   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/trim-reads.py to 755
2021-07-10T12:58:54,626   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/find-hits.py to 755
2021-07-10T12:58:54,626   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/filter-fasta.py to 755
2021-07-10T12:58:54,626   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/aa-to-properties.py to 755
2021-07-10T12:58:54,627   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/check-fasta-json-blast-consistency.py to 755
2021-07-10T12:58:54,627   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/convert-sam-to-fastq.sh to 755
2021-07-10T12:58:54,627   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/fasta-subtraction.py to 755
2021-07-10T12:58:54,628   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/randomize-fasta.py to 755
2021-07-10T12:58:54,628   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/convert-fastq-to-fasta.py to 755
2021-07-10T12:58:54,628   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/filter-hits-to-fasta.py to 755
2021-07-10T12:58:54,628   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/trim-primers.py to 755
2021-07-10T12:58:54,629   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/graph-evalues.py to 755
2021-07-10T12:58:54,629   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/aa-info.py to 755
2021-07-10T12:58:54,629   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/convert-blast-xml-to-json.py to 755
2021-07-10T12:58:54,630   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/position-summary.py to 755
2021-07-10T12:58:54,630   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/summarize-reads.py to 755
2021-07-10T12:58:54,630   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/read-blast-json.py to 755
2021-07-10T12:58:54,630   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/dna-to-aa.py to 755
2021-07-10T12:58:54,631   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/pre-commit.sh to 755
2021-07-10T12:58:54,631   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/codon-distance.py to 755
2021-07-10T12:58:54,631   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/extract-ORFs.py to 755
2021-07-10T12:58:54,632   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/bit-score-to-e-value.py to 755
2021-07-10T12:58:54,632   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/convert-fasta-to-one-sequence-per-line.py to 755
2021-07-10T12:58:54,632   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/sff-to-fastq.py to 755
2021-07-10T12:58:54,632   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/get-reads.py to 755
2021-07-10T12:58:54,633   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.data/scripts/read-blast-xml.py to 755
2021-07-10T12:58:54,655   creating build/bdist.linux-armv7l/wheel/dark_matter-1.0.12.dist-info/WHEEL
2021-07-10T12:58:54,658   creating '/tmp/pip-wheel-m1cnj64i/dark_matter-1.0.12-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-10T12:58:54,661   adding 'dark/__init__.py'
2021-07-10T12:58:54,685   adding 'dark/_gor4.abi3.so'
2021-07-10T12:58:54,688   adding 'dark/aa.py'
2021-07-10T12:58:54,691   adding 'dark/alignments.py'
2021-07-10T12:58:54,692   adding 'dark/analyze_reads.py'
2021-07-10T12:58:54,693   adding 'dark/baseimage.py'
2021-07-10T12:58:54,695   adding 'dark/codonDistance.py'
2021-07-10T12:58:54,696   adding 'dark/consensus.py'
2021-07-10T12:58:54,697   adding 'dark/database.py'
2021-07-10T12:58:54,698   adding 'dark/dimension.py'
2021-07-10T12:58:54,699   adding 'dark/distance.py'
2021-07-10T12:58:54,701   adding 'dark/entrez.py'
2021-07-10T12:58:54,702   adding 'dark/fasta.py'
2021-07-10T12:58:54,703   adding 'dark/fastq.py'
2021-07-10T12:58:54,705   adding 'dark/features.py'
2021-07-10T12:58:54,707   adding 'dark/filter.py'
2021-07-10T12:58:54,708   adding 'dark/gor4.py'
2021-07-10T12:58:54,712   adding 'dark/graphics.py'
2021-07-10T12:58:54,714   adding 'dark/hsp.py'
2021-07-10T12:58:54,715   adding 'dark/html.py'
2021-07-10T12:58:54,717   adding 'dark/intervals.py'
2021-07-10T12:58:54,718   adding 'dark/ipynb.py'
2021-07-10T12:58:54,720   adding 'dark/local_align.py'
2021-07-10T12:58:54,722   adding 'dark/mutations.py'
2021-07-10T12:58:54,724   adding 'dark/ncbidb.py'
2021-07-10T12:58:54,725   adding 'dark/orfs.py'
2021-07-10T12:58:54,728   adding 'dark/reads.py'
2021-07-10T12:58:54,729   adding 'dark/score.py'
2021-07-10T12:58:54,731   adding 'dark/sequence.py'
2021-07-10T12:58:54,732   adding 'dark/simplify.py'
2021-07-10T12:58:54,733   adding 'dark/summarize.py'
2021-07-10T12:58:54,734   adding 'dark/taxonomy.py'
2021-07-10T12:58:54,736   adding 'dark/titles.py'
2021-07-10T12:58:54,738   adding 'dark/utils.py'
2021-07-10T12:58:54,755   adding 'dark/data/gor4/New_KS.267.obs'
2021-07-10T12:58:54,769   adding 'dark/data/gor4/New_KS.267.seq'
2021-07-10T12:58:54,772   adding 'dark_matter-1.0.12.data/scripts/aa-info.py'
2021-07-10T12:58:54,773   adding 'dark_matter-1.0.12.data/scripts/aa-to-properties.py'
2021-07-10T12:58:54,774   adding 'dark_matter-1.0.12.data/scripts/adaptor-distances.py'
2021-07-10T12:58:54,775   adding 'dark_matter-1.0.12.data/scripts/alignments-per-read.py'
2021-07-10T12:58:54,777   adding 'dark_matter-1.0.12.data/scripts/bit-score-to-e-value.py'
2021-07-10T12:58:54,778   adding 'dark_matter-1.0.12.data/scripts/cat-json-blast-records.py'
2021-07-10T12:58:54,779   adding 'dark_matter-1.0.12.data/scripts/check-fasta-json-blast-consistency.py'
2021-07-10T12:58:54,780   adding 'dark_matter-1.0.12.data/scripts/codon-distance.py'
2021-07-10T12:58:54,781   adding 'dark_matter-1.0.12.data/scripts/convert-blast-xml-to-json.py'
2021-07-10T12:58:54,782   adding 'dark_matter-1.0.12.data/scripts/convert-fasta-to-one-sequence-per-line.py'
2021-07-10T12:58:54,783   adding 'dark_matter-1.0.12.data/scripts/convert-fastq-to-fasta.py'
2021-07-10T12:58:54,784   adding 'dark_matter-1.0.12.data/scripts/convert-sam-to-fastq.sh'
2021-07-10T12:58:54,785   adding 'dark_matter-1.0.12.data/scripts/dna-to-aa.py'
2021-07-10T12:58:54,787   adding 'dark_matter-1.0.12.data/scripts/e-value-to-bit-score.py'
2021-07-10T12:58:54,788   adding 'dark_matter-1.0.12.data/scripts/extract-ORFs.py'
2021-07-10T12:58:54,789   adding 'dark_matter-1.0.12.data/scripts/fasta-subset.py'
2021-07-10T12:58:54,790   adding 'dark_matter-1.0.12.data/scripts/fasta-subtraction.py'
2021-07-10T12:58:54,791   adding 'dark_matter-1.0.12.data/scripts/filter-fasta-by-complexity.py'
2021-07-10T12:58:54,793   adding 'dark_matter-1.0.12.data/scripts/filter-fasta-by-taxonomy.py'
2021-07-10T12:58:54,794   adding 'dark_matter-1.0.12.data/scripts/filter-fasta.py'
2021-07-10T12:58:54,796   adding 'dark_matter-1.0.12.data/scripts/filter-hits-to-fasta.py'
2021-07-10T12:58:54,797   adding 'dark_matter-1.0.12.data/scripts/find-hits.py'
2021-07-10T12:58:54,798   adding 'dark_matter-1.0.12.data/scripts/get-features.py'
2021-07-10T12:58:54,800   adding 'dark_matter-1.0.12.data/scripts/get-reads.py'
2021-07-10T12:58:54,801   adding 'dark_matter-1.0.12.data/scripts/graph-evalues.py'
2021-07-10T12:58:54,802   adding 'dark_matter-1.0.12.data/scripts/local-align.py'
2021-07-10T12:58:54,804   adding 'dark_matter-1.0.12.data/scripts/noninteractive-alignment-panel.py'
2021-07-10T12:58:54,805   adding 'dark_matter-1.0.12.data/scripts/position-summary.py'
2021-07-10T12:58:54,806   adding 'dark_matter-1.0.12.data/scripts/pre-commit.sh'
2021-07-10T12:58:54,807   adding 'dark_matter-1.0.12.data/scripts/print-blast-xml-for-derek.py'
2021-07-10T12:58:54,809   adding 'dark_matter-1.0.12.data/scripts/print-blast-xml.py'
2021-07-10T12:58:54,810   adding 'dark_matter-1.0.12.data/scripts/print-read-lengths.py'
2021-07-10T12:58:54,811   adding 'dark_matter-1.0.12.data/scripts/randomize-fasta.py'
2021-07-10T12:58:54,813   adding 'dark_matter-1.0.12.data/scripts/read-blast-json.py'
2021-07-10T12:58:54,814   adding 'dark_matter-1.0.12.data/scripts/read-blast-xml.py'
2021-07-10T12:58:54,815   adding 'dark_matter-1.0.12.data/scripts/sff-to-fastq.py'
2021-07-10T12:58:54,817   adding 'dark_matter-1.0.12.data/scripts/split-fasta-by-adaptors.py'
2021-07-10T12:58:54,818   adding 'dark_matter-1.0.12.data/scripts/summarize-reads.py'
2021-07-10T12:58:54,819   adding 'dark_matter-1.0.12.data/scripts/trim-primers.py'
2021-07-10T12:58:54,820   adding 'dark_matter-1.0.12.data/scripts/trim-reads.py'
2021-07-10T12:58:54,822   adding 'dark_matter-1.0.12.data/scripts/write-htcondor-job-spec.py'
2021-07-10T12:58:55,037   adding 'dark_matter-1.0.12.dist-info/METADATA'
2021-07-10T12:58:55,039   adding 'dark_matter-1.0.12.dist-info/WHEEL'
2021-07-10T12:58:55,041   adding 'dark_matter-1.0.12.dist-info/top_level.txt'
2021-07-10T12:58:55,044   adding 'dark_matter-1.0.12.dist-info/RECORD'
2021-07-10T12:58:55,057   removing build/bdist.linux-armv7l/wheel
2021-07-10T12:58:55,180   Building wheel for dark-matter (setup.py): finished with status 'done'
2021-07-10T12:58:55,185   Created wheel for dark-matter: filename=dark_matter-1.0.12-cp39-cp39-linux_armv7l.whl size=213693 sha256=0624625a3b1b011b7528b86bc136c101929b8b68aeb0dc64f9d05c8c2a4d9f6c
2021-07-10T12:58:55,186   Stored in directory: /tmp/pip-ephem-wheel-cache-9we_sspk/wheels/88/d1/00/d0df7a03c70bae4029f1c3c428d6561ec3f043da1dabf64e17
2021-07-10T12:58:55,196 Successfully built dark-matter
2021-07-10T12:58:55,206 Removed build tracker: '/tmp/pip-req-tracker-xu27tnb_'