2021-07-10T13:09:57,411 Created temporary directory: /tmp/pip-ephem-wheel-cache-f2n818am 2021-07-10T13:09:57,414 Created temporary directory: /tmp/pip-req-tracker-s_9lb5w3 2021-07-10T13:09:57,415 Initialized build tracking at /tmp/pip-req-tracker-s_9lb5w3 2021-07-10T13:09:57,415 Created build tracker: /tmp/pip-req-tracker-s_9lb5w3 2021-07-10T13:09:57,415 Entered build tracker: /tmp/pip-req-tracker-s_9lb5w3 2021-07-10T13:09:57,416 Created temporary directory: /tmp/pip-wheel-3nqssfvx 2021-07-10T13:09:57,444 1 location(s) to search for versions of chemlab: 2021-07-10T13:09:57,444 * https://pypi.org/simple/chemlab/ 2021-07-10T13:09:57,444 Fetching project page and analyzing links: https://pypi.org/simple/chemlab/ 2021-07-10T13:09:57,445 Getting page https://pypi.org/simple/chemlab/ 2021-07-10T13:09:57,446 Found index url https://pypi.org/simple 2021-07-10T13:09:57,629 Found link https://files.pythonhosted.org/packages/fe/92/0485eac4092638f1369c0b69db145fc1ac1552a3d98597b49f5790505078/chemlab-0.1.tar.gz#sha256=abda82e0cdd07d3b4d2f718a1543ec3c419b4905f90cf37d70df22ee994f7dd3 (from https://pypi.org/simple/chemlab/), version: 0.1 2021-07-10T13:09:57,629 Found link https://files.pythonhosted.org/packages/fc/bb/c3809f22dc4bb43786328f757ccd9f0aba85a3e3a31799b8f72dcec278c6/chemlab-0.2.tar.gz#sha256=170803d9586c6e8b2b5a80dfb34954a7378a7ad5306c252e6e75657a92e811da (from https://pypi.org/simple/chemlab/), version: 0.2 2021-07-10T13:09:57,629 Found link https://files.pythonhosted.org/packages/32/fc/ef64d2415ad8d45fd5c7c2fa1a1ea707d8c27709cb75e37c7f2a70e8a752/chemlab-0.3.tar.gz#sha256=0490499a3af8959fedd9f0de8f6afa70a360685592d473891389e5116292681e (from https://pypi.org/simple/chemlab/), version: 0.3 2021-07-10T13:09:57,630 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/d0/3f/5822787996d3371adeec9fda448708cddeff6d0043ce9f09210bae17d8c7/chemlab-1.0b1-py2.7-linux-x86_64.egg#sha256=d63fc784ae5f9fc54eaf8d61f45e62e48c7d4926b843b8f8ae5b20c2a44cef91 (from https://pypi.org/simple/chemlab/) 2021-07-10T13:09:57,630 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/8b/91/0080f381cb320dda5541de750726c1ec75995da7387e757dcb62fc2e03d2/chemlab-1.0b1-py3.5-linux-x86_64.egg#sha256=a7db93e3d042310f0c03697bcab2e858ed6e0abedf29402d1f19c23057c4cf52 (from https://pypi.org/simple/chemlab/) 2021-07-10T13:09:57,630 Found link https://files.pythonhosted.org/packages/54/78/33ac14d7ceb7068a34e6e1bb3474c18e79991faba2d9cda35ceb20d7d54e/chemlab-1.0b1.tar.gz#sha256=85958bbb834b2678fa27a091bd932055896f947a021328156ac4f14705c6e3a2 (from https://pypi.org/simple/chemlab/), version: 1.0b1 2021-07-10T13:09:57,630 Found link https://files.pythonhosted.org/packages/66/ce/d4f243223b4bbc13839d5977056cc86424c66bede936ebc463c9ce40ce97/chemlab-1.1.tar.gz#sha256=21d589ee277e9d0a03024b349d75ba6adeec5527b0e68fac730c4586e63476d2 (from https://pypi.org/simple/chemlab/), version: 1.1 2021-07-10T13:09:57,631 Skipping link: not a file: https://pypi.org/simple/chemlab/ 2021-07-10T13:09:57,649 Given no hashes to check 1 links for project 'chemlab': discarding no candidates 2021-07-10T13:09:57,668 Collecting chemlab==1.0b1 2021-07-10T13:09:57,670 Created temporary directory: /tmp/pip-unpack-hh_30obl 2021-07-10T13:09:59,744 Downloading chemlab-1.0b1.tar.gz (9.9 MB) 2021-07-10T13:10:05,126 Added chemlab==1.0b1 from https://files.pythonhosted.org/packages/54/78/33ac14d7ceb7068a34e6e1bb3474c18e79991faba2d9cda35ceb20d7d54e/chemlab-1.0b1.tar.gz#sha256=85958bbb834b2678fa27a091bd932055896f947a021328156ac4f14705c6e3a2 to build tracker '/tmp/pip-req-tracker-s_9lb5w3' 2021-07-10T13:10:05,127 Running setup.py (path:/tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5/setup.py) egg_info for package chemlab 2021-07-10T13:10:05,128 Created temporary directory: /tmp/pip-pip-egg-info-4ak4io_j 2021-07-10T13:10:05,128 Running command python setup.py egg_info 2021-07-10T13:10:06,327 running egg_info 2021-07-10T13:10:06,329 creating /tmp/pip-pip-egg-info-4ak4io_j/chemlab.egg-info 2021-07-10T13:10:06,330 writing /tmp/pip-pip-egg-info-4ak4io_j/chemlab.egg-info/PKG-INFO 2021-07-10T13:10:06,332 writing dependency_links to /tmp/pip-pip-egg-info-4ak4io_j/chemlab.egg-info/dependency_links.txt 2021-07-10T13:10:06,334 writing requirements to /tmp/pip-pip-egg-info-4ak4io_j/chemlab.egg-info/requires.txt 2021-07-10T13:10:06,335 writing top-level names to /tmp/pip-pip-egg-info-4ak4io_j/chemlab.egg-info/top_level.txt 2021-07-10T13:10:06,337 writing manifest file '/tmp/pip-pip-egg-info-4ak4io_j/chemlab.egg-info/SOURCES.txt' 2021-07-10T13:10:06,537 reading manifest file '/tmp/pip-pip-egg-info-4ak4io_j/chemlab.egg-info/SOURCES.txt' 2021-07-10T13:10:06,539 reading manifest template 'MANIFEST.in' 2021-07-10T13:10:06,540 warning: no files found matching 'distribute_setup.py' 2021-07-10T13:10:07,111 warning: manifest_maker: MANIFEST.in, line 4: 'recursive-exclude' expects ... 2021-07-10T13:10:07,125 no previously-included directories found matching 'docs/_build' 2021-07-10T13:10:07,125 adding license file 'COPYING' 2021-07-10T13:10:07,140 writing manifest file '/tmp/pip-pip-egg-info-4ak4io_j/chemlab.egg-info/SOURCES.txt' 2021-07-10T13:10:07,237 Source in /tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5 has version 1.0b1, which satisfies requirement chemlab==1.0b1 from https://files.pythonhosted.org/packages/54/78/33ac14d7ceb7068a34e6e1bb3474c18e79991faba2d9cda35ceb20d7d54e/chemlab-1.0b1.tar.gz#sha256=85958bbb834b2678fa27a091bd932055896f947a021328156ac4f14705c6e3a2 2021-07-10T13:10:07,238 Removed chemlab==1.0b1 from https://files.pythonhosted.org/packages/54/78/33ac14d7ceb7068a34e6e1bb3474c18e79991faba2d9cda35ceb20d7d54e/chemlab-1.0b1.tar.gz#sha256=85958bbb834b2678fa27a091bd932055896f947a021328156ac4f14705c6e3a2 from build tracker '/tmp/pip-req-tracker-s_9lb5w3' 2021-07-10T13:10:07,242 Created temporary directory: /tmp/pip-unpack-i1ufkh_j 2021-07-10T13:10:07,243 Building wheels for collected packages: chemlab 2021-07-10T13:10:07,247 Created temporary directory: /tmp/pip-wheel-6kzg4j3x 2021-07-10T13:10:07,247 Building wheel for chemlab (setup.py): started 2021-07-10T13:10:07,247 Destination directory: /tmp/pip-wheel-6kzg4j3x 2021-07-10T13:10:07,248 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-6kzg4j3x 2021-07-10T13:10:08,436 running bdist_wheel 2021-07-10T13:10:08,441 running build 2021-07-10T13:10:08,441 running build_py 2021-07-10T13:10:10,728 creating build 2021-07-10T13:10:10,728 creating build/lib.linux-armv7l-3.9 2021-07-10T13:10:10,729 creating build/lib.linux-armv7l-3.9/chemlab 2021-07-10T13:10:10,731 copying chemlab/table.py -> build/lib.linux-armv7l-3.9/chemlab 2021-07-10T13:10:10,734 copying chemlab/ipython.py -> build/lib.linux-armv7l-3.9/chemlab 2021-07-10T13:10:10,737 copying chemlab/__init__.py -> build/lib.linux-armv7l-3.9/chemlab 2021-07-10T13:10:10,740 creating build/lib.linux-armv7l-3.9/examples 2021-07-10T13:10:10,741 copying examples/offline_rendering.py -> build/lib.linux-armv7l-3.9/examples 2021-07-10T13:10:10,744 copying examples/tetrahedra_tutorial.py -> build/lib.linux-armv7l-3.9/examples 2021-07-10T13:10:10,747 copying examples/view_trajectory.py -> build/lib.linux-armv7l-3.9/examples 2021-07-10T13:10:10,752 copying examples/nacl.py -> build/lib.linux-armv7l-3.9/examples 2021-07-10T13:10:10,755 copying examples/__init__.py -> build/lib.linux-armv7l-3.9/examples 2021-07-10T13:10:10,758 creating build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,759 copying tests/testtools.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,762 copying tests/test_covertree.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,765 copying tests/test_io.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,767 copying tests/test_base.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,771 copying tests/test_db.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,773 copying tests/mock.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,777 copying tests/test_md.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,779 copying tests/test_trajectory.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,781 copying tests/__init__.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,783 copying tests/test_utils.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,785 copying tests/test_core.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,788 copying tests/test_table.py -> build/lib.linux-armv7l-3.9/tests 2021-07-10T13:10:10,790 creating build/lib.linux-armv7l-3.9/chemlab/io 2021-07-10T13:10:10,791 copying chemlab/io/trajectory.py -> build/lib.linux-armv7l-3.9/chemlab/io 2021-07-10T13:10:10,793 copying chemlab/io/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/io 2021-07-10T13:10:10,795 copying chemlab/io/datafile.py -> build/lib.linux-armv7l-3.9/chemlab/io 2021-07-10T13:10:10,798 copying chemlab/io/textutils.py -> build/lib.linux-armv7l-3.9/chemlab/io 2021-07-10T13:10:10,801 creating build/lib.linux-armv7l-3.9/chemlab/md 2021-07-10T13:10:10,802 copying chemlab/md/simulation.py -> build/lib.linux-armv7l-3.9/chemlab/md 2021-07-10T13:10:10,804 copying chemlab/md/energy.py -> build/lib.linux-armv7l-3.9/chemlab/md 2021-07-10T13:10:10,806 copying chemlab/md/analysis.py -> build/lib.linux-armv7l-3.9/chemlab/md 2021-07-10T13:10:10,808 copying chemlab/md/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/md 2021-07-10T13:10:10,810 copying chemlab/md/potential.py -> build/lib.linux-armv7l-3.9/chemlab/md 2021-07-10T13:10:10,813 creating build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,814 copying chemlab/core/random.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,817 copying chemlab/core/system.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,820 copying chemlab/core/base.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,823 copying chemlab/core/attributes.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,826 copying chemlab/core/trajectory.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,828 copying chemlab/core/atom.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,830 copying chemlab/core/molecule.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,832 copying chemlab/core/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,834 copying chemlab/core/serialization.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,836 copying chemlab/core/fields.py -> build/lib.linux-armv7l-3.9/chemlab/core 2021-07-10T13:10:10,839 creating build/lib.linux-armv7l-3.9/chemlab/libs 2021-07-10T13:10:10,840 copying chemlab/libs/cirpy.py -> build/lib.linux-armv7l-3.9/chemlab/libs 2021-07-10T13:10:10,843 copying chemlab/libs/periodic_kdtree.py -> build/lib.linux-armv7l-3.9/chemlab/libs 2021-07-10T13:10:10,846 copying chemlab/libs/chemspipy.py -> build/lib.linux-armv7l-3.9/chemlab/libs 2021-07-10T13:10:10,848 copying chemlab/libs/termcolor.py -> build/lib.linux-armv7l-3.9/chemlab/libs 2021-07-10T13:10:10,851 copying chemlab/libs/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/libs 2021-07-10T13:10:10,854 creating build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,855 copying chemlab/graphics/textures.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,857 copying chemlab/graphics/qtviewer.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,860 copying chemlab/graphics/transformations.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,864 copying chemlab/graphics/octree.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,866 copying chemlab/graphics/pickers.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,869 copying chemlab/graphics/processviewer.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,871 copying chemlab/graphics/camera.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,874 copying chemlab/graphics/buffers.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,876 copying chemlab/graphics/shaders.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,878 copying chemlab/graphics/qchemlabwidget.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,881 copying chemlab/graphics/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,883 copying chemlab/graphics/uis.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,886 copying chemlab/graphics/shapes.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,888 copying chemlab/graphics/colors.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,891 copying chemlab/graphics/qttrajectory.py -> build/lib.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:10:10,895 creating build/lib.linux-armv7l-3.9/chemlab/resources 2021-07-10T13:10:10,895 copying chemlab/resources/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/resources 2021-07-10T13:10:10,898 creating build/lib.linux-armv7l-3.9/chemlab/qc 2021-07-10T13:10:10,899 copying chemlab/qc/pgbf.py -> build/lib.linux-armv7l-3.9/chemlab/qc 2021-07-10T13:10:10,901 copying chemlab/qc/wavefunction.py -> build/lib.linux-armv7l-3.9/chemlab/qc 2021-07-10T13:10:10,903 copying chemlab/qc/cgbf.py -> build/lib.linux-armv7l-3.9/chemlab/qc 2021-07-10T13:10:10,906 copying chemlab/qc/one.py -> build/lib.linux-armv7l-3.9/chemlab/qc 2021-07-10T13:10:10,909 copying chemlab/qc/utils.py -> build/lib.linux-armv7l-3.9/chemlab/qc 2021-07-10T13:10:10,911 copying chemlab/qc/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/qc 2021-07-10T13:10:10,914 creating build/lib.linux-armv7l-3.9/chemlab/contrib 2021-07-10T13:10:10,915 copying chemlab/contrib/gromacs.py -> build/lib.linux-armv7l-3.9/chemlab/contrib 2021-07-10T13:10:10,917 copying chemlab/contrib/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/contrib 2021-07-10T13:10:10,920 creating build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,921 copying chemlab/db/chemspiderdb.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,924 copying chemlab/db/rcsbdb.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,926 copying chemlab/db/base.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,928 copying chemlab/db/toxnetdb.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,930 copying chemlab/db/lj.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,936 copying chemlab/db/cirdb.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,938 copying chemlab/db/units.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,940 copying chemlab/db/local.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,942 copying chemlab/db/chemlabdb.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,944 copying chemlab/db/utils.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,946 copying chemlab/db/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/db 2021-07-10T13:10:10,949 creating build/lib.linux-armv7l-3.9/chemlab/notebook 2021-07-10T13:10:10,950 copying chemlab/notebook/display.py -> build/lib.linux-armv7l-3.9/chemlab/notebook 2021-07-10T13:10:10,952 copying chemlab/notebook/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/notebook 2021-07-10T13:10:10,956 creating build/lib.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:10:10,957 copying chemlab/utils/progressbar.py -> build/lib.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:10:10,959 copying chemlab/utils/distances.py -> build/lib.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:10:10,962 copying chemlab/utils/covertree.py -> build/lib.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:10:10,965 copying chemlab/utils/pbc.py -> build/lib.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:10:10,967 copying chemlab/utils/geometry.py -> build/lib.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:10:10,969 copying chemlab/utils/neighbors.py -> build/lib.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:10:10,971 copying chemlab/utils/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:10:10,973 copying chemlab/utils/formula.py -> build/lib.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:10:10,975 creating build/lib.linux-armv7l-3.9/chemlab/mviewer 2021-07-10T13:10:10,977 copying chemlab/mviewer/qtmolecularviewer.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer 2021-07-10T13:10:10,979 copying chemlab/mviewer/events.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer 2021-07-10T13:10:10,981 copying chemlab/mviewer/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer 2021-07-10T13:10:10,983 copying chemlab/mviewer/QIPythonWidget.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer 2021-07-10T13:10:10,986 creating build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:10,987 copying chemlab/io/handlers/gro_map.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:10,990 copying chemlab/io/handlers/gro.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:10,992 copying chemlab/io/handlers/_cclib.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:10,994 copying chemlab/io/handlers/cml.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:10,996 copying chemlab/io/handlers/base.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:10,999 copying chemlab/io/handlers/mol2.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,001 copying chemlab/io/handlers/xyz.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,003 copying chemlab/io/handlers/tinker.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,005 copying chemlab/io/handlers/edr.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,007 copying chemlab/io/handlers/cif.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,009 copying chemlab/io/handlers/xtctrr.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,012 copying chemlab/io/handlers/utils.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,014 copying chemlab/io/handlers/pdb.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,016 copying chemlab/io/handlers/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,018 copying chemlab/io/handlers/mol.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,021 copying chemlab/io/handlers/gamess.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,023 copying chemlab/io/handlers/hdf.py -> build/lib.linux-armv7l-3.9/chemlab/io/handlers 2021-07-10T13:10:11,026 creating build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,027 copying chemlab/core/spacegroup/spacegroup.py -> build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,031 copying chemlab/core/spacegroup/cell.py -> build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,033 copying chemlab/core/spacegroup/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,035 copying chemlab/core/spacegroup/crystal.py -> build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,038 creating build/lib.linux-armv7l-3.9/chemlab/libs/pyxdr 2021-07-10T13:10:11,039 copying chemlab/libs/pyxdr/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/libs/pyxdr 2021-07-10T13:10:11,042 creating build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing 2021-07-10T13:10:11,043 copying chemlab/graphics/postprocessing/noeffect.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing 2021-07-10T13:10:11,046 copying chemlab/graphics/postprocessing/fxaa.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing 2021-07-10T13:10:11,048 copying chemlab/graphics/postprocessing/ssao.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing 2021-07-10T13:10:11,051 copying chemlab/graphics/postprocessing/glow.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing 2021-07-10T13:10:11,053 copying chemlab/graphics/postprocessing/base.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing 2021-07-10T13:10:11,056 copying chemlab/graphics/postprocessing/gamma.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing 2021-07-10T13:10:11,058 copying chemlab/graphics/postprocessing/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing 2021-07-10T13:10:11,060 copying chemlab/graphics/postprocessing/outline.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing 2021-07-10T13:10:11,063 creating build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,064 copying chemlab/graphics/renderers/wireframe.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,067 copying chemlab/graphics/renderers/triangles.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,069 copying chemlab/graphics/renderers/point.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,071 copying chemlab/graphics/renderers/base.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,073 copying chemlab/graphics/renderers/bond.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,076 copying chemlab/graphics/renderers/box.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,078 copying chemlab/graphics/renderers/cylinder.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,080 copying chemlab/graphics/renderers/atom.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,082 copying chemlab/graphics/renderers/arrow.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,085 copying chemlab/graphics/renderers/line.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,087 copying chemlab/graphics/renderers/cylinder_imp.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,089 copying chemlab/graphics/renderers/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,091 copying chemlab/graphics/renderers/ballandstick.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,093 copying chemlab/graphics/renderers/sphere_imp.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,096 copying chemlab/graphics/renderers/sphere.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:10:11,100 creating build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,100 copying chemlab/graphics/postprocessing/shaders/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,103 creating build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,104 copying chemlab/graphics/renderers/shaders/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,106 creating build/lib.linux-armv7l-3.9/chemlab/db/localdb 2021-07-10T13:10:11,107 copying chemlab/db/localdb/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/db/localdb 2021-07-10T13:10:11,110 creating build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,111 copying chemlab/db/localdb/molecule/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,113 creating build/lib.linux-armv7l-3.9/chemlab/db/localdb/data 2021-07-10T13:10:11,114 copying chemlab/db/localdb/data/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/data 2021-07-10T13:10:11,117 creating build/lib.linux-armv7l-3.9/chemlab/mviewer/api 2021-07-10T13:10:11,118 copying chemlab/mviewer/api/init.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/api 2021-07-10T13:10:11,121 copying chemlab/mviewer/api/display.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/api 2021-07-10T13:10:11,123 copying chemlab/mviewer/api/selections.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/api 2021-07-10T13:10:11,126 copying chemlab/mviewer/api/appeareance.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/api 2021-07-10T13:10:11,129 copying chemlab/mviewer/api/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/api 2021-07-10T13:10:11,131 copying chemlab/mviewer/api/ui.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/api 2021-07-10T13:10:11,133 copying chemlab/mviewer/api/core.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/api 2021-07-10T13:10:11,136 creating build/lib.linux-armv7l-3.9/chemlab/mviewer/representations 2021-07-10T13:10:11,137 copying chemlab/mviewer/representations/vdw.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/representations 2021-07-10T13:10:11,140 copying chemlab/mviewer/representations/state.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/representations 2021-07-10T13:10:11,142 copying chemlab/mviewer/representations/__init__.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/representations 2021-07-10T13:10:11,144 copying chemlab/mviewer/representations/ballandstick.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/representations 2021-07-10T13:10:11,147 copying chemlab/mviewer/representations/obsarray.py -> build/lib.linux-armv7l-3.9/chemlab/mviewer/representations 2021-07-10T13:10:11,187 copying chemlab/resources/select_atoms.svg -> build/lib.linux-armv7l-3.9/chemlab/resources 2021-07-10T13:10:11,189 copying chemlab/resources/show_icon.svg -> build/lib.linux-armv7l-3.9/chemlab/resources 2021-07-10T13:10:11,191 copying chemlab/resources/pause_icon.svg -> build/lib.linux-armv7l-3.9/chemlab/resources 2021-07-10T13:10:11,194 copying chemlab/resources/play_icon.svg -> build/lib.linux-armv7l-3.9/chemlab/resources 2021-07-10T13:10:11,196 copying chemlab/resources/settings_icon.svg -> build/lib.linux-armv7l-3.9/chemlab/resources 2021-07-10T13:10:11,199 copying chemlab/resources/hide_icon.svg -> build/lib.linux-armv7l-3.9/chemlab/resources 2021-07-10T13:10:11,201 copying chemlab/resources/select_molecules.svg -> build/lib.linux-armv7l-3.9/chemlab/resources 2021-07-10T13:10:11,204 copying chemlab/core/spacegroup/spacegroup.pyc -> build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,208 copying chemlab/core/spacegroup/crystal.pyc -> build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,210 copying chemlab/core/spacegroup/spacegroup.dat -> build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,221 copying chemlab/core/spacegroup/cell.pyc -> build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,223 copying chemlab/core/spacegroup/__init__.pyc -> build/lib.linux-armv7l-3.9/chemlab/core/spacegroup 2021-07-10T13:10:11,226 copying chemlab/graphics/postprocessing/shaders/noeffect.vert -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,229 copying chemlab/graphics/postprocessing/shaders/text.vert -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,231 copying chemlab/graphics/postprocessing/shaders/glow3.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,234 copying chemlab/graphics/postprocessing/shaders/outline.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,236 copying chemlab/graphics/postprocessing/shaders/ssao_blur.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,238 copying chemlab/graphics/postprocessing/shaders/ssao.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,241 copying chemlab/graphics/postprocessing/shaders/text.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,243 copying chemlab/graphics/postprocessing/shaders/noeffect.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,246 copying chemlab/graphics/postprocessing/shaders/glow2.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,248 copying chemlab/graphics/postprocessing/shaders/gamma.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,250 copying chemlab/graphics/postprocessing/shaders/glow1.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,253 copying chemlab/graphics/postprocessing/shaders/fxaa.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders 2021-07-10T13:10:11,255 copying chemlab/graphics/renderers/shaders/cylinderimp.vert -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,257 copying chemlab/graphics/renderers/shaders/default_persp.vert -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,260 copying chemlab/graphics/renderers/shaders/sphereimp.vert -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,262 copying chemlab/graphics/renderers/shaders/default_light.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,264 copying chemlab/graphics/renderers/shaders/sphereimp_writenormal.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,267 copying chemlab/graphics/renderers/shaders/no_light.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,269 copying chemlab/graphics/renderers/shaders/sphereimp.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,271 copying chemlab/graphics/renderers/shaders/cylinderimp.frag -> build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders 2021-07-10T13:10:11,274 copying chemlab/db/localdb/molecule/gromacs.cl-.json -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,276 copying chemlab/db/localdb/molecule/gromacs.urea.json -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,279 copying chemlab/db/localdb/molecule/gromacs.spc.json -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,281 copying chemlab/db/localdb/molecule/example.water.json -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,283 copying chemlab/db/localdb/molecule/gromacs.br-.json -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,286 copying chemlab/db/localdb/molecule/gromacs.na+.json -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,288 copying chemlab/db/localdb/molecule/gromacs.spce.json -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,291 copying chemlab/db/localdb/molecule/gromacs.li+.json -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,293 copying chemlab/db/localdb/molecule/example.norbornene.json -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule 2021-07-10T13:10:11,296 copying chemlab/db/localdb/data/element.txt -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/data 2021-07-10T13:10:11,299 copying chemlab/db/localdb/data/covalent_radii.dat -> build/lib.linux-armv7l-3.9/chemlab/db/localdb/data 2021-07-10T13:10:11,322 running build_ext 2021-07-10T13:10:11,389 cythoning chemlab/libs/ckdtree.pyx to chemlab/libs/ckdtree.c 2021-07-10T13:10:12,009 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5/chemlab/libs/ckdtree.pyx 2021-07-10T13:10:12,009 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:10:14,800 warning: chemlab/libs/ckdtree.pyx:206:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,801 warning: chemlab/libs/ckdtree.pyx:206:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,926 warning: chemlab/libs/ckdtree.pyx:1414:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,927 warning: chemlab/libs/ckdtree.pyx:1414:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,928 warning: chemlab/libs/ckdtree.pyx:1447:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,929 warning: chemlab/libs/ckdtree.pyx:1447:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,933 warning: chemlab/libs/ckdtree.pyx:1581:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,933 warning: chemlab/libs/ckdtree.pyx:1581:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,935 warning: chemlab/libs/ckdtree.pyx:1627:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,936 warning: chemlab/libs/ckdtree.pyx:1627:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,940 warning: chemlab/libs/ckdtree.pyx:1768:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,940 warning: chemlab/libs/ckdtree.pyx:1768:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,948 warning: chemlab/libs/ckdtree.pyx:1953:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:14,949 warning: chemlab/libs/ckdtree.pyx:1953:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:10:15,758 warning: chemlab/libs/ckdtree.pyx:1214:24: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-10T13:10:15,761 warning: chemlab/libs/ckdtree.pyx:1224:33: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2021-07-10T13:10:17,277 cythoning chemlab/utils/_covertree.pyx to chemlab/utils/_covertree.c 2021-07-10T13:10:17,284 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5/chemlab/utils/_covertree.pyx 2021-07-10T13:10:17,284 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:10:21,571 warning: chemlab/utils/_covertree.pyx:31:15: local variable 'abs_' referenced before assignment 2021-07-10T13:10:21,571 warning: chemlab/utils/_covertree.pyx:32:45: local variable 'abs_' referenced before assignment 2021-07-10T13:10:24,896 cythoning chemlab/utils/celllinkedlist.pyx to chemlab/utils/celllinkedlist.c 2021-07-10T13:10:24,902 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5/chemlab/utils/celllinkedlist.pyx 2021-07-10T13:10:24,903 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:10:32,248 cythoning chemlab/utils/cdist.pyx to chemlab/utils/cdist.c 2021-07-10T13:10:32,255 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5/chemlab/utils/cdist.pxd 2021-07-10T13:10:32,255 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:10:38,989 cythoning chemlab/graphics/renderers/utils.pyx to chemlab/graphics/renderers/utils.c 2021-07-10T13:10:38,996 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5/chemlab/graphics/renderers/utils.pyx 2021-07-10T13:10:38,997 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:10:46,117 cythoning chemlab/libs/pyxdr/_xdrfile.pyx to chemlab/libs/pyxdr/_xdrfile.c 2021-07-10T13:10:46,124 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-3nqssfvx/chemlab_8c1dbb6695f64a16ae65f3b30d0958a5/chemlab/libs/pyxdr/_xdrfile.pxd 2021-07-10T13:10:46,125 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:10:48,202 building 'chemlab.libs.ckdtree' extension 2021-07-10T13:10:48,203 creating build/temp.linux-armv7l-3.9 2021-07-10T13:10:48,204 creating build/temp.linux-armv7l-3.9/chemlab 2021-07-10T13:10:48,205 creating build/temp.linux-armv7l-3.9/chemlab/libs 2021-07-10T13:10:48,206 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c chemlab/libs/ckdtree.c -o build/temp.linux-armv7l-3.9/chemlab/libs/ckdtree.o 2021-07-10T13:10:48,623 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-07-10T13:10:48,624 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:10:48,624 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:10:48,624 from chemlab/libs/ckdtree.c:612: 2021-07-10T13:10:48,624 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:10:48,624 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:10:48,624 | ^~~~~~~ 2021-07-10T13:11:01,827 In file included from /usr/include/python3.9/tupleobject.h:39, 2021-07-10T13:11:01,827 from /usr/include/python3.9/Python.h:105, 2021-07-10T13:11:01,827 from chemlab/libs/ckdtree.c:6: 2021-07-10T13:11:01,828 chemlab/libs/ckdtree.c: In function ‘__pyx_pf_7chemlab_4libs_7ckdtree_7cKDTree_4query’: 2021-07-10T13:11:01,843 /usr/include/python3.9/cpython/tupleobject.h:27:60: warning: array subscript -1 is below array bounds of ‘PyObject *[1]’ {aka ‘struct _object *[1]’} [-Warray-bounds] 2021-07-10T13:11:01,843 27 | #define PyTuple_GET_ITEM(op, i) (_PyTuple_CAST(op)->ob_item[i]) 2021-07-10T13:11:01,844 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ 2021-07-10T13:11:01,844 chemlab/libs/ckdtree.c:25841:27: note: in expansion of macro ‘PyTuple_GET_ITEM’ 2021-07-10T13:11:01,844 25841 | PyObject *r = PyTuple_GET_ITEM(o, n); 2021-07-10T13:11:01,844 | ^~~~~~~~~~~~~~~~ 2021-07-10T13:11:01,844 /usr/include/python3.9/cpython/tupleobject.h:14:15: note: while referencing ‘ob_item’ 2021-07-10T13:11:01,844 14 | PyObject *ob_item[1]; 2021-07-10T13:11:01,844 | ^~~~~~~ 2021-07-10T13:11:06,557 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/chemlab/libs/ckdtree.o -o build/lib.linux-armv7l-3.9/chemlab/libs/ckdtree.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:11:06,736 building 'chemlab.utils._covertree' extension 2021-07-10T13:11:06,736 creating build/temp.linux-armv7l-3.9/chemlab/utils 2021-07-10T13:11:06,737 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c chemlab/utils/_covertree.c -o build/temp.linux-armv7l-3.9/chemlab/utils/_covertree.o 2021-07-10T13:11:07,125 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-07-10T13:11:07,125 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:11:07,125 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:11:07,125 from chemlab/utils/_covertree.c:612: 2021-07-10T13:11:07,126 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:11:07,126 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:11:07,126 | ^~~~~~~ 2021-07-10T13:11:27,742 chemlab/utils/_covertree.c: In function ‘__pyx_f_7chemlab_5utils_10_covertree_14PeriodicMetric_distance’: 2021-07-10T13:11:27,744 chemlab/utils/_covertree.c:3731:8: warning: ‘__pyx_v_abs_’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-10T13:11:27,744 3731 | if (__pyx_t_12) { 2021-07-10T13:11:27,744 | ^ 2021-07-10T13:11:39,321 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/chemlab/utils/_covertree.o -o build/lib.linux-armv7l-3.9/chemlab/utils/_covertree.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:11:39,555 building 'chemlab.utils.celllinkedlist' extension 2021-07-10T13:11:39,555 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c chemlab/utils/celllinkedlist.c -o build/temp.linux-armv7l-3.9/chemlab/utils/celllinkedlist.o 2021-07-10T13:11:39,932 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-07-10T13:11:39,932 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:11:39,932 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:11:39,933 from chemlab/utils/celllinkedlist.c:612: 2021-07-10T13:11:39,933 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:11:39,933 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:11:39,933 | ^~~~~~~ 2021-07-10T13:11:55,987 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/chemlab/utils/celllinkedlist.o -o build/lib.linux-armv7l-3.9/chemlab/utils/celllinkedlist.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:11:56,175 building 'chemlab.utils.cdist' extension 2021-07-10T13:11:56,175 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c chemlab/utils/cdist.c -o build/temp.linux-armv7l-3.9/chemlab/utils/cdist.o 2021-07-10T13:11:56,554 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-07-10T13:11:56,554 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:11:56,554 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:11:56,554 from chemlab/utils/cdist.c:613: 2021-07-10T13:11:56,554 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:11:56,554 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:11:56,555 | ^~~~~~~ 2021-07-10T13:12:09,225 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/chemlab/utils/cdist.o -o build/lib.linux-armv7l-3.9/chemlab/utils/cdist.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:12:09,396 building 'chemlab.graphics.renderers.utils' extension 2021-07-10T13:12:09,397 creating build/temp.linux-armv7l-3.9/chemlab/graphics 2021-07-10T13:12:09,398 creating build/temp.linux-armv7l-3.9/chemlab/graphics/renderers 2021-07-10T13:12:09,398 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c chemlab/graphics/renderers/utils.c -o build/temp.linux-armv7l-3.9/chemlab/graphics/renderers/utils.o 2021-07-10T13:12:09,779 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-07-10T13:12:09,779 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:12:09,779 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:12:09,779 from chemlab/graphics/renderers/utils.c:612: 2021-07-10T13:12:09,780 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:12:09,780 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:12:09,780 | ^~~~~~~ 2021-07-10T13:12:11,007 chemlab/graphics/renderers/utils.c:3536:13: warning: ‘__pyx_f_7chemlab_8graphics_9renderers_5utils_mat3_transpose’ defined but not used [-Wunused-function] 2021-07-10T13:12:11,008 3536 | static void __pyx_f_7chemlab_8graphics_9renderers_5utils_mat3_transpose(__Pyx_memviewslice __pyx_v_M) { 2021-07-10T13:12:11,008 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T13:12:23,824 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/chemlab/graphics/renderers/utils.o -o build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/utils.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:12:23,994 building 'chemlab.libs.pyxdr._xdrfile' extension 2021-07-10T13:12:23,995 creating build/temp.linux-armv7l-3.9/chemlab/libs/pyxdr 2021-07-10T13:12:23,996 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./chemlab/libs/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c chemlab/libs/pyxdr/_xdrfile.c -o build/temp.linux-armv7l-3.9/chemlab/libs/pyxdr/_xdrfile.o 2021-07-10T13:12:24,385 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, 2021-07-10T13:12:24,386 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:12:24,386 from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:12:24,386 from chemlab/libs/pyxdr/_xdrfile.c:614: 2021-07-10T13:12:24,386 /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:12:24,386 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:12:24,386 | ^~~~~~~ 2021-07-10T13:12:24,475 chemlab/libs/pyxdr/_xdrfile.c: In function ‘__pyx_pf_7chemlab_4libs_5pyxdr_8_xdrfile_9XTCReader_8readframe’: 2021-07-10T13:12:24,477 chemlab/libs/pyxdr/_xdrfile.c:3350:94: warning: passing argument 5 of ‘read_xtc’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-10T13:12:24,477 3350 | __pyx_v_rc = read_xtc(__pyx_v_xd, __pyx_v_natoms, (&__pyx_v_step), (&__pyx_v_time), ((float *)__pyx_v_box->data), ((rvec *)__pyx_v_x->data), (&__pyx_v_prec)); 2021-07-10T13:12:24,477 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T13:12:24,477 | | 2021-07-10T13:12:24,477 | float * 2021-07-10T13:12:24,478 In file included from chemlab/libs/pyxdr/_xdrfile.c:611: 2021-07-10T13:12:24,478 chemlab/libs/pyxdr/xdrfile_xtc.h:32:16: note: expected ‘float (*)[3]’ but argument is of type ‘float *’ 2021-07-10T13:12:24,478 32 | matrix box,rvec *x,float *prec); 2021-07-10T13:12:24,478 | ~~~~~~~^~~ 2021-07-10T13:12:30,596 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./chemlab/libs/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c chemlab/libs/pyxdr/xdrfile.c -o build/temp.linux-armv7l-3.9/chemlab/libs/pyxdr/xdrfile.o 2021-07-10T13:12:30,752 chemlab/libs/pyxdr/xdrfile.c: In function ‘sizeofint’: 2021-07-10T13:12:30,752 chemlab/libs/pyxdr/xdrfile.c:479:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-10T13:12:30,752 479 | while (size >= num && num_of_bits < 32) 2021-07-10T13:12:30,752 | ^~ 2021-07-10T13:12:30,753 chemlab/libs/pyxdr/xdrfile.c: In function ‘sizeofints’: 2021-07-10T13:12:30,753 chemlab/libs/pyxdr/xdrfile.c:525:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T13:12:30,753 525 | while (bytes[num_of_bytes] >= num) 2021-07-10T13:12:30,753 | ^~ 2021-07-10T13:12:30,754 chemlab/libs/pyxdr/xdrfile.c: In function ‘encodeints’: 2021-07-10T13:12:30,754 chemlab/libs/pyxdr/xdrfile.c:634:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-10T13:12:30,754 634 | if (num_of_bits >= num_of_bytes * 8) 2021-07-10T13:12:30,754 | ^~ 2021-07-10T13:12:30,754 chemlab/libs/pyxdr/xdrfile.c:636:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-10T13:12:30,754 636 | for (i = 0; i < num_of_bytes; i++) 2021-07-10T13:12:30,755 | ^ 2021-07-10T13:12:30,755 chemlab/libs/pyxdr/xdrfile.c:644:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-10T13:12:30,755 644 | for (i = 0; i < num_of_bytes-1; i++) 2021-07-10T13:12:30,755 | ^ 2021-07-10T13:12:30,755 chemlab/libs/pyxdr/xdrfile.c: In function ‘decodebits’: 2021-07-10T13:12:30,755 chemlab/libs/pyxdr/xdrfile.c:684:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T13:12:30,755 684 | if (lastbits < num_of_bits) 2021-07-10T13:12:30,756 | ^ 2021-07-10T13:12:30,757 chemlab/libs/pyxdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’: 2021-07-10T13:12:30,757 chemlab/libs/pyxdr/xdrfile.c:794:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T13:12:30,757 794 | if(size3>xfp->buf1size) 2021-07-10T13:12:30,757 | ^ 2021-07-10T13:12:30,758 chemlab/libs/pyxdr/xdrfile.c:846:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T13:12:30,759 846 | maxidx = (LASTIDXxfp->buf1size) 2021-07-10T13:12:30,763 | ^ 2021-07-10T13:12:30,768 chemlab/libs/pyxdr/xdrfile.c:1113:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-10T13:12:30,768 1113 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) 2021-07-10T13:12:30,768 | ^ 2021-07-10T13:12:30,768 chemlab/libs/pyxdr/xdrfile.c:1119:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T13:12:30,768 1119 | maxidx = (LASTIDXxfp->buf1size) 2021-07-10T13:12:30,774 | ^ 2021-07-10T13:12:30,776 chemlab/libs/pyxdr/xdrfile.c:1346:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T13:12:30,776 1346 | maxidx = (LASTIDXxfp->buf1size) { 2021-07-10T13:12:30,782 | ^ 2021-07-10T13:12:30,788 chemlab/libs/pyxdr/xdrfile.c:1597:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-10T13:12:30,788 1597 | while (smallidx < LASTIDX && magicints[smallidx] < mindiff) { 2021-07-10T13:12:30,788 | ^ 2021-07-10T13:12:30,789 chemlab/libs/pyxdr/xdrfile.c:1602:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2021-07-10T13:12:30,789 1602 | maxidx = (LASTIDX build/scripts-3.9 2021-07-10T13:12:33,969 changing mode of build/scripts-3.9/chemlab from 644 to 755 2021-07-10T13:12:33,981 installing to build/bdist.linux-armv7l/wheel 2021-07-10T13:12:33,981 running install 2021-07-10T13:12:33,983 running install_lib 2021-07-10T13:12:33,988 creating build/bdist.linux-armv7l 2021-07-10T13:12:33,989 creating build/bdist.linux-armv7l/wheel 2021-07-10T13:12:33,991 creating build/bdist.linux-armv7l/wheel/chemlab 2021-07-10T13:12:33,993 creating build/bdist.linux-armv7l/wheel/chemlab/io 2021-07-10T13:12:33,994 copying build/lib.linux-armv7l-3.9/chemlab/io/trajectory.py -> build/bdist.linux-armv7l/wheel/chemlab/io 2021-07-10T13:12:33,996 creating build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:33,997 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/gro_map.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:33,999 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/gro.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,002 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/_cclib.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,004 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/cml.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,006 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/base.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,008 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/mol2.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,009 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/xyz.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,011 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/tinker.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,013 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/edr.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,016 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/cif.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,017 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/xtctrr.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,020 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/utils.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,022 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/pdb.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,024 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,026 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/mol.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,028 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/gamess.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,030 copying build/lib.linux-armv7l-3.9/chemlab/io/handlers/hdf.py -> build/bdist.linux-armv7l/wheel/chemlab/io/handlers 2021-07-10T13:12:34,032 copying build/lib.linux-armv7l-3.9/chemlab/io/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/io 2021-07-10T13:12:34,034 copying build/lib.linux-armv7l-3.9/chemlab/io/datafile.py -> build/bdist.linux-armv7l/wheel/chemlab/io 2021-07-10T13:12:34,036 copying build/lib.linux-armv7l-3.9/chemlab/io/textutils.py -> build/bdist.linux-armv7l/wheel/chemlab/io 2021-07-10T13:12:34,038 creating build/bdist.linux-armv7l/wheel/chemlab/md 2021-07-10T13:12:34,039 copying build/lib.linux-armv7l-3.9/chemlab/md/simulation.py -> build/bdist.linux-armv7l/wheel/chemlab/md 2021-07-10T13:12:34,041 copying build/lib.linux-armv7l-3.9/chemlab/md/energy.py -> build/bdist.linux-armv7l/wheel/chemlab/md 2021-07-10T13:12:34,043 copying build/lib.linux-armv7l-3.9/chemlab/md/analysis.py -> build/bdist.linux-armv7l/wheel/chemlab/md 2021-07-10T13:12:34,045 copying build/lib.linux-armv7l-3.9/chemlab/md/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/md 2021-07-10T13:12:34,047 copying build/lib.linux-armv7l-3.9/chemlab/md/potential.py -> build/bdist.linux-armv7l/wheel/chemlab/md 2021-07-10T13:12:34,050 creating build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,051 copying build/lib.linux-armv7l-3.9/chemlab/core/random.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,053 copying build/lib.linux-armv7l-3.9/chemlab/core/system.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,057 creating build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,058 copying build/lib.linux-armv7l-3.9/chemlab/core/spacegroup/spacegroup.py -> build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,062 copying build/lib.linux-armv7l-3.9/chemlab/core/spacegroup/cell.py -> build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,063 copying build/lib.linux-armv7l-3.9/chemlab/core/spacegroup/spacegroup.pyc -> build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,067 copying build/lib.linux-armv7l-3.9/chemlab/core/spacegroup/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,069 copying build/lib.linux-armv7l-3.9/chemlab/core/spacegroup/crystal.pyc -> build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,071 copying build/lib.linux-armv7l-3.9/chemlab/core/spacegroup/spacegroup.dat -> build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,086 copying build/lib.linux-armv7l-3.9/chemlab/core/spacegroup/cell.pyc -> build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,088 copying build/lib.linux-armv7l-3.9/chemlab/core/spacegroup/__init__.pyc -> build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,090 copying build/lib.linux-armv7l-3.9/chemlab/core/spacegroup/crystal.py -> build/bdist.linux-armv7l/wheel/chemlab/core/spacegroup 2021-07-10T13:12:34,092 copying build/lib.linux-armv7l-3.9/chemlab/core/base.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,096 copying build/lib.linux-armv7l-3.9/chemlab/core/attributes.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,098 copying build/lib.linux-armv7l-3.9/chemlab/core/trajectory.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,100 copying build/lib.linux-armv7l-3.9/chemlab/core/atom.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,102 copying build/lib.linux-armv7l-3.9/chemlab/core/molecule.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,103 copying build/lib.linux-armv7l-3.9/chemlab/core/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,105 copying build/lib.linux-armv7l-3.9/chemlab/core/serialization.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,107 copying build/lib.linux-armv7l-3.9/chemlab/core/fields.py -> build/bdist.linux-armv7l/wheel/chemlab/core 2021-07-10T13:12:34,109 creating build/bdist.linux-armv7l/wheel/chemlab/libs 2021-07-10T13:12:34,110 copying build/lib.linux-armv7l-3.9/chemlab/libs/cirpy.py -> build/bdist.linux-armv7l/wheel/chemlab/libs 2021-07-10T13:12:34,113 copying build/lib.linux-armv7l-3.9/chemlab/libs/ckdtree.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/chemlab/libs 2021-07-10T13:12:34,144 copying build/lib.linux-armv7l-3.9/chemlab/libs/periodic_kdtree.py -> build/bdist.linux-armv7l/wheel/chemlab/libs 2021-07-10T13:12:34,147 copying build/lib.linux-armv7l-3.9/chemlab/libs/chemspipy.py -> build/bdist.linux-armv7l/wheel/chemlab/libs 2021-07-10T13:12:34,149 copying build/lib.linux-armv7l-3.9/chemlab/libs/termcolor.py -> build/bdist.linux-armv7l/wheel/chemlab/libs 2021-07-10T13:12:34,151 copying build/lib.linux-armv7l-3.9/chemlab/libs/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/libs 2021-07-10T13:12:34,153 creating build/bdist.linux-armv7l/wheel/chemlab/libs/pyxdr 2021-07-10T13:12:34,154 copying build/lib.linux-armv7l-3.9/chemlab/libs/pyxdr/_xdrfile.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/chemlab/libs/pyxdr 2021-07-10T13:12:34,174 copying build/lib.linux-armv7l-3.9/chemlab/libs/pyxdr/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/libs/pyxdr 2021-07-10T13:12:34,176 creating build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,177 copying build/lib.linux-armv7l-3.9/chemlab/graphics/textures.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,179 copying build/lib.linux-armv7l-3.9/chemlab/graphics/qtviewer.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,181 copying build/lib.linux-armv7l-3.9/chemlab/graphics/transformations.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,185 copying build/lib.linux-armv7l-3.9/chemlab/graphics/octree.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,186 copying build/lib.linux-armv7l-3.9/chemlab/graphics/pickers.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,188 copying build/lib.linux-armv7l-3.9/chemlab/graphics/processviewer.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,190 copying build/lib.linux-armv7l-3.9/chemlab/graphics/camera.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,192 copying build/lib.linux-armv7l-3.9/chemlab/graphics/buffers.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,194 copying build/lib.linux-armv7l-3.9/chemlab/graphics/shaders.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,198 creating build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing 2021-07-10T13:12:34,199 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/noeffect.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing 2021-07-10T13:12:34,201 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/fxaa.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing 2021-07-10T13:12:34,203 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/ssao.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing 2021-07-10T13:12:34,206 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/glow.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing 2021-07-10T13:12:34,208 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/base.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing 2021-07-10T13:12:34,210 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/gamma.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing 2021-07-10T13:12:34,212 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing 2021-07-10T13:12:34,215 creating build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,216 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/glow3.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,218 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/noeffect.vert -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,220 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/outline.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,222 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/ssao_blur.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,224 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/ssao.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,226 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/text.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,228 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/noeffect.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,229 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/glow2.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,232 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,233 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/gamma.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,235 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/glow1.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,237 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/text.vert -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,239 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/shaders/fxaa.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing/shaders 2021-07-10T13:12:34,241 copying build/lib.linux-armv7l-3.9/chemlab/graphics/postprocessing/outline.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/postprocessing 2021-07-10T13:12:34,243 copying build/lib.linux-armv7l-3.9/chemlab/graphics/qchemlabwidget.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,246 copying build/lib.linux-armv7l-3.9/chemlab/graphics/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,249 creating build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,250 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/wireframe.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,252 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/triangles.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,254 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/point.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,256 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/base.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,258 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/bond.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,260 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/box.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,262 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/cylinder.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,265 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/atom.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,268 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/arrow.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,270 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/line.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,272 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/cylinder_imp.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,274 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,276 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/ballandstick.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,278 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,304 creating build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,304 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders/cylinderimp.vert -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,307 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders/default_persp.vert -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,309 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders/default_light.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,312 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders/sphereimp_writenormal.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,314 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders/sphereimp.vert -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,317 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders/no_light.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,319 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,321 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders/sphereimp.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,323 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/shaders/cylinderimp.frag -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers/shaders 2021-07-10T13:12:34,325 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/sphere_imp.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,327 copying build/lib.linux-armv7l-3.9/chemlab/graphics/renderers/sphere.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics/renderers 2021-07-10T13:12:34,329 copying build/lib.linux-armv7l-3.9/chemlab/graphics/uis.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,332 copying build/lib.linux-armv7l-3.9/chemlab/graphics/shapes.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,335 copying build/lib.linux-armv7l-3.9/chemlab/graphics/colors.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,338 copying build/lib.linux-armv7l-3.9/chemlab/graphics/qttrajectory.py -> build/bdist.linux-armv7l/wheel/chemlab/graphics 2021-07-10T13:12:34,340 copying build/lib.linux-armv7l-3.9/chemlab/table.py -> build/bdist.linux-armv7l/wheel/chemlab 2021-07-10T13:12:34,343 creating build/bdist.linux-armv7l/wheel/chemlab/resources 2021-07-10T13:12:34,344 copying build/lib.linux-armv7l-3.9/chemlab/resources/select_atoms.svg -> build/bdist.linux-armv7l/wheel/chemlab/resources 2021-07-10T13:12:34,346 copying build/lib.linux-armv7l-3.9/chemlab/resources/show_icon.svg -> build/bdist.linux-armv7l/wheel/chemlab/resources 2021-07-10T13:12:34,349 copying build/lib.linux-armv7l-3.9/chemlab/resources/pause_icon.svg -> build/bdist.linux-armv7l/wheel/chemlab/resources 2021-07-10T13:12:34,351 copying build/lib.linux-armv7l-3.9/chemlab/resources/play_icon.svg -> build/bdist.linux-armv7l/wheel/chemlab/resources 2021-07-10T13:12:34,353 copying build/lib.linux-armv7l-3.9/chemlab/resources/settings_icon.svg -> build/bdist.linux-armv7l/wheel/chemlab/resources 2021-07-10T13:12:34,355 copying build/lib.linux-armv7l-3.9/chemlab/resources/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/resources 2021-07-10T13:12:34,357 copying build/lib.linux-armv7l-3.9/chemlab/resources/hide_icon.svg -> build/bdist.linux-armv7l/wheel/chemlab/resources 2021-07-10T13:12:34,359 copying build/lib.linux-armv7l-3.9/chemlab/resources/select_molecules.svg -> build/bdist.linux-armv7l/wheel/chemlab/resources 2021-07-10T13:12:34,362 creating build/bdist.linux-armv7l/wheel/chemlab/qc 2021-07-10T13:12:34,363 copying build/lib.linux-armv7l-3.9/chemlab/qc/pgbf.py -> build/bdist.linux-armv7l/wheel/chemlab/qc 2021-07-10T13:12:34,365 copying build/lib.linux-armv7l-3.9/chemlab/qc/wavefunction.py -> build/bdist.linux-armv7l/wheel/chemlab/qc 2021-07-10T13:12:34,367 copying build/lib.linux-armv7l-3.9/chemlab/qc/cgbf.py -> build/bdist.linux-armv7l/wheel/chemlab/qc 2021-07-10T13:12:34,370 copying build/lib.linux-armv7l-3.9/chemlab/qc/one.py -> build/bdist.linux-armv7l/wheel/chemlab/qc 2021-07-10T13:12:34,372 copying build/lib.linux-armv7l-3.9/chemlab/qc/utils.py -> build/bdist.linux-armv7l/wheel/chemlab/qc 2021-07-10T13:12:34,375 copying build/lib.linux-armv7l-3.9/chemlab/qc/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/qc 2021-07-10T13:12:34,376 copying build/lib.linux-armv7l-3.9/chemlab/ipython.py -> build/bdist.linux-armv7l/wheel/chemlab 2021-07-10T13:12:34,379 creating build/bdist.linux-armv7l/wheel/chemlab/contrib 2021-07-10T13:12:34,380 copying build/lib.linux-armv7l-3.9/chemlab/contrib/gromacs.py -> build/bdist.linux-armv7l/wheel/chemlab/contrib 2021-07-10T13:12:34,382 copying build/lib.linux-armv7l-3.9/chemlab/contrib/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/contrib 2021-07-10T13:12:34,384 creating build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,385 copying build/lib.linux-armv7l-3.9/chemlab/db/chemspiderdb.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,387 copying build/lib.linux-armv7l-3.9/chemlab/db/rcsbdb.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,389 copying build/lib.linux-armv7l-3.9/chemlab/db/base.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,391 copying build/lib.linux-armv7l-3.9/chemlab/db/toxnetdb.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,394 creating build/bdist.linux-armv7l/wheel/chemlab/db/localdb 2021-07-10T13:12:34,395 creating build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,396 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/gromacs.cl-.json -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,399 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/gromacs.urea.json -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,401 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/gromacs.spc.json -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,403 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/example.water.json -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,405 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/gromacs.br-.json -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,407 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/gromacs.na+.json -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,409 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/gromacs.spce.json -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,411 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,412 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/gromacs.li+.json -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,414 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/molecule/example.norbornene.json -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/molecule 2021-07-10T13:12:34,417 creating build/bdist.linux-armv7l/wheel/chemlab/db/localdb/data 2021-07-10T13:12:34,418 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/data/element.txt -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/data 2021-07-10T13:12:34,421 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/data/covalent_radii.dat -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/data 2021-07-10T13:12:34,422 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/data/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb/data 2021-07-10T13:12:34,424 copying build/lib.linux-armv7l-3.9/chemlab/db/localdb/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/db/localdb 2021-07-10T13:12:34,426 copying build/lib.linux-armv7l-3.9/chemlab/db/lj.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,428 copying build/lib.linux-armv7l-3.9/chemlab/db/cirdb.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,430 copying build/lib.linux-armv7l-3.9/chemlab/db/units.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,432 copying build/lib.linux-armv7l-3.9/chemlab/db/local.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,434 copying build/lib.linux-armv7l-3.9/chemlab/db/chemlabdb.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,437 copying build/lib.linux-armv7l-3.9/chemlab/db/utils.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,439 copying build/lib.linux-armv7l-3.9/chemlab/db/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/db 2021-07-10T13:12:34,442 copying build/lib.linux-armv7l-3.9/chemlab/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab 2021-07-10T13:12:34,445 creating build/bdist.linux-armv7l/wheel/chemlab/notebook 2021-07-10T13:12:34,446 copying build/lib.linux-armv7l-3.9/chemlab/notebook/display.py -> build/bdist.linux-armv7l/wheel/chemlab/notebook 2021-07-10T13:12:34,450 copying build/lib.linux-armv7l-3.9/chemlab/notebook/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/notebook 2021-07-10T13:12:34,453 creating build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,454 copying build/lib.linux-armv7l-3.9/chemlab/utils/progressbar.py -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,457 copying build/lib.linux-armv7l-3.9/chemlab/utils/distances.py -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,460 copying build/lib.linux-armv7l-3.9/chemlab/utils/covertree.py -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,463 copying build/lib.linux-armv7l-3.9/chemlab/utils/pbc.py -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,465 copying build/lib.linux-armv7l-3.9/chemlab/utils/_covertree.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,514 copying build/lib.linux-armv7l-3.9/chemlab/utils/celllinkedlist.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,542 copying build/lib.linux-armv7l-3.9/chemlab/utils/geometry.py -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,543 copying build/lib.linux-armv7l-3.9/chemlab/utils/neighbors.py -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,545 copying build/lib.linux-armv7l-3.9/chemlab/utils/cdist.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,566 copying build/lib.linux-armv7l-3.9/chemlab/utils/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,568 copying build/lib.linux-armv7l-3.9/chemlab/utils/formula.py -> build/bdist.linux-armv7l/wheel/chemlab/utils 2021-07-10T13:12:34,571 creating build/bdist.linux-armv7l/wheel/chemlab/mviewer 2021-07-10T13:12:34,572 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/qtmolecularviewer.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer 2021-07-10T13:12:34,574 creating build/bdist.linux-armv7l/wheel/chemlab/mviewer/api 2021-07-10T13:12:34,575 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/api/init.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/api 2021-07-10T13:12:34,577 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/api/display.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/api 2021-07-10T13:12:34,579 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/api/selections.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/api 2021-07-10T13:12:34,582 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/api/appeareance.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/api 2021-07-10T13:12:34,584 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/api/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/api 2021-07-10T13:12:34,586 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/api/ui.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/api 2021-07-10T13:12:34,588 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/api/core.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/api 2021-07-10T13:12:34,590 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/events.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer 2021-07-10T13:12:34,592 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer 2021-07-10T13:12:34,595 creating build/bdist.linux-armv7l/wheel/chemlab/mviewer/representations 2021-07-10T13:12:34,596 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/representations/vdw.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/representations 2021-07-10T13:12:34,599 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/representations/state.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/representations 2021-07-10T13:12:34,601 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/representations/__init__.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/representations 2021-07-10T13:12:34,603 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/representations/ballandstick.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/representations 2021-07-10T13:12:34,605 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/representations/obsarray.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer/representations 2021-07-10T13:12:34,608 copying build/lib.linux-armv7l-3.9/chemlab/mviewer/QIPythonWidget.py -> build/bdist.linux-armv7l/wheel/chemlab/mviewer 2021-07-10T13:12:34,610 creating build/bdist.linux-armv7l/wheel/examples 2021-07-10T13:12:34,611 copying build/lib.linux-armv7l-3.9/examples/offline_rendering.py -> build/bdist.linux-armv7l/wheel/examples 2021-07-10T13:12:34,613 copying build/lib.linux-armv7l-3.9/examples/tetrahedra_tutorial.py -> build/bdist.linux-armv7l/wheel/examples 2021-07-10T13:12:34,615 copying build/lib.linux-armv7l-3.9/examples/view_trajectory.py -> build/bdist.linux-armv7l/wheel/examples 2021-07-10T13:12:34,617 copying build/lib.linux-armv7l-3.9/examples/nacl.py -> build/bdist.linux-armv7l/wheel/examples 2021-07-10T13:12:34,619 copying build/lib.linux-armv7l-3.9/examples/__init__.py -> build/bdist.linux-armv7l/wheel/examples 2021-07-10T13:12:34,622 creating build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,623 copying build/lib.linux-armv7l-3.9/tests/testtools.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,625 copying build/lib.linux-armv7l-3.9/tests/test_covertree.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,627 copying build/lib.linux-armv7l-3.9/tests/test_io.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,629 copying build/lib.linux-armv7l-3.9/tests/test_base.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,632 copying build/lib.linux-armv7l-3.9/tests/test_db.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,634 copying build/lib.linux-armv7l-3.9/tests/mock.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,637 copying build/lib.linux-armv7l-3.9/tests/test_md.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,639 copying build/lib.linux-armv7l-3.9/tests/test_trajectory.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,641 copying build/lib.linux-armv7l-3.9/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,643 copying build/lib.linux-armv7l-3.9/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,645 copying build/lib.linux-armv7l-3.9/tests/test_core.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,648 copying build/lib.linux-armv7l-3.9/tests/test_table.py -> build/bdist.linux-armv7l/wheel/tests 2021-07-10T13:12:34,650 running install_egg_info 2021-07-10T13:12:34,684 running egg_info 2021-07-10T13:12:34,685 writing chemlab.egg-info/PKG-INFO 2021-07-10T13:12:34,687 writing dependency_links to chemlab.egg-info/dependency_links.txt 2021-07-10T13:12:34,689 writing requirements to chemlab.egg-info/requires.txt 2021-07-10T13:12:34,690 writing top-level names to chemlab.egg-info/top_level.txt 2021-07-10T13:12:34,741 reading manifest file 'chemlab.egg-info/SOURCES.txt' 2021-07-10T13:12:34,767 reading manifest template 'MANIFEST.in' 2021-07-10T13:12:34,768 warning: no files found matching 'distribute_setup.py' 2021-07-10T13:12:35,330 warning: manifest_maker: MANIFEST.in, line 4: 'recursive-exclude' expects ... 2021-07-10T13:12:35,343 no previously-included directories found matching 'docs/_build' 2021-07-10T13:12:35,343 adding license file 'COPYING' 2021-07-10T13:12:35,364 writing manifest file 'chemlab.egg-info/SOURCES.txt' 2021-07-10T13:12:35,366 Copying chemlab.egg-info to build/bdist.linux-armv7l/wheel/chemlab-1.0b1-py3.9.egg-info 2021-07-10T13:12:35,378 running install_scripts 2021-07-10T13:12:35,403 creating build/bdist.linux-armv7l/wheel/chemlab-1.0b1.data 2021-07-10T13:12:35,404 creating build/bdist.linux-armv7l/wheel/chemlab-1.0b1.data/scripts 2021-07-10T13:12:35,405 copying build/scripts-3.9/chemlab -> build/bdist.linux-armv7l/wheel/chemlab-1.0b1.data/scripts 2021-07-10T13:12:35,408 changing mode of build/bdist.linux-armv7l/wheel/chemlab-1.0b1.data/scripts/chemlab to 755 2021-07-10T13:12:35,430 adding license file "COPYING" (matched pattern "COPYING*") 2021-07-10T13:12:35,435 creating build/bdist.linux-armv7l/wheel/chemlab-1.0b1.dist-info/WHEEL 2021-07-10T13:12:35,438 creating '/tmp/pip-wheel-6kzg4j3x/chemlab-1.0b1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T13:12:35,441 adding 'chemlab/__init__.py' 2021-07-10T13:12:35,442 adding 'chemlab/ipython.py' 2021-07-10T13:12:35,443 adding 'chemlab/table.py' 2021-07-10T13:12:35,445 adding 'chemlab/contrib/__init__.py' 2021-07-10T13:12:35,446 adding 'chemlab/contrib/gromacs.py' 2021-07-10T13:12:35,448 adding 'chemlab/core/__init__.py' 2021-07-10T13:12:35,449 adding 'chemlab/core/atom.py' 2021-07-10T13:12:35,451 adding 'chemlab/core/attributes.py' 2021-07-10T13:12:35,456 adding 'chemlab/core/base.py' 2021-07-10T13:12:35,457 adding 'chemlab/core/fields.py' 2021-07-10T13:12:35,458 adding 'chemlab/core/molecule.py' 2021-07-10T13:12:35,460 adding 'chemlab/core/random.py' 2021-07-10T13:12:35,461 adding 'chemlab/core/serialization.py' 2021-07-10T13:12:35,464 adding 'chemlab/core/system.py' 2021-07-10T13:12:35,465 adding 'chemlab/core/trajectory.py' 2021-07-10T13:12:35,467 adding 'chemlab/core/spacegroup/__init__.py' 2021-07-10T13:12:35,469 adding 'chemlab/core/spacegroup/__init__.pyc' 2021-07-10T13:12:35,470 adding 'chemlab/core/spacegroup/cell.py' 2021-07-10T13:12:35,471 adding 'chemlab/core/spacegroup/cell.pyc' 2021-07-10T13:12:35,473 adding 'chemlab/core/spacegroup/crystal.py' 2021-07-10T13:12:35,474 adding 'chemlab/core/spacegroup/crystal.pyc' 2021-07-10T13:12:35,489 adding 'chemlab/core/spacegroup/spacegroup.dat' 2021-07-10T13:12:35,495 adding 'chemlab/core/spacegroup/spacegroup.py' 2021-07-10T13:12:35,499 adding 'chemlab/core/spacegroup/spacegroup.pyc' 2021-07-10T13:12:35,501 adding 'chemlab/db/__init__.py' 2021-07-10T13:12:35,502 adding 'chemlab/db/base.py' 2021-07-10T13:12:35,504 adding 'chemlab/db/chemlabdb.py' 2021-07-10T13:12:35,505 adding 'chemlab/db/chemspiderdb.py' 2021-07-10T13:12:35,506 adding 'chemlab/db/cirdb.py' 2021-07-10T13:12:35,508 adding 'chemlab/db/lj.py' 2021-07-10T13:12:35,509 adding 'chemlab/db/local.py' 2021-07-10T13:12:35,510 adding 'chemlab/db/rcsbdb.py' 2021-07-10T13:12:35,512 adding 'chemlab/db/toxnetdb.py' 2021-07-10T13:12:35,513 adding 'chemlab/db/units.py' 2021-07-10T13:12:35,514 adding 'chemlab/db/utils.py' 2021-07-10T13:12:35,516 adding 'chemlab/db/localdb/__init__.py' 2021-07-10T13:12:35,517 adding 'chemlab/db/localdb/data/__init__.py' 2021-07-10T13:12:35,519 adding 'chemlab/db/localdb/data/covalent_radii.dat' 2021-07-10T13:12:35,521 adding 'chemlab/db/localdb/data/element.txt' 2021-07-10T13:12:35,523 adding 'chemlab/db/localdb/molecule/__init__.py' 2021-07-10T13:12:35,525 adding 'chemlab/db/localdb/molecule/example.norbornene.json' 2021-07-10T13:12:35,526 adding 'chemlab/db/localdb/molecule/example.water.json' 2021-07-10T13:12:35,527 adding 'chemlab/db/localdb/molecule/gromacs.br-.json' 2021-07-10T13:12:35,528 adding 'chemlab/db/localdb/molecule/gromacs.cl-.json' 2021-07-10T13:12:35,529 adding 'chemlab/db/localdb/molecule/gromacs.li+.json' 2021-07-10T13:12:35,530 adding 'chemlab/db/localdb/molecule/gromacs.na+.json' 2021-07-10T13:12:35,531 adding 'chemlab/db/localdb/molecule/gromacs.spc.json' 2021-07-10T13:12:35,533 adding 'chemlab/db/localdb/molecule/gromacs.spce.json' 2021-07-10T13:12:35,534 adding 'chemlab/db/localdb/molecule/gromacs.urea.json' 2021-07-10T13:12:35,536 adding 'chemlab/graphics/__init__.py' 2021-07-10T13:12:35,537 adding 'chemlab/graphics/buffers.py' 2021-07-10T13:12:35,539 adding 'chemlab/graphics/camera.py' 2021-07-10T13:12:35,542 adding 'chemlab/graphics/colors.py' 2021-07-10T13:12:35,543 adding 'chemlab/graphics/octree.py' 2021-07-10T13:12:35,545 adding 'chemlab/graphics/pickers.py' 2021-07-10T13:12:35,546 adding 'chemlab/graphics/processviewer.py' 2021-07-10T13:12:35,549 adding 'chemlab/graphics/qchemlabwidget.py' 2021-07-10T13:12:35,551 adding 'chemlab/graphics/qttrajectory.py' 2021-07-10T13:12:35,552 adding 'chemlab/graphics/qtviewer.py' 2021-07-10T13:12:35,554 adding 'chemlab/graphics/shaders.py' 2021-07-10T13:12:35,555 adding 'chemlab/graphics/shapes.py' 2021-07-10T13:12:35,557 adding 'chemlab/graphics/textures.py' 2021-07-10T13:12:35,565 adding 'chemlab/graphics/transformations.py' 2021-07-10T13:12:35,568 adding 'chemlab/graphics/uis.py' 2021-07-10T13:12:35,569 adding 'chemlab/graphics/postprocessing/__init__.py' 2021-07-10T13:12:35,571 adding 'chemlab/graphics/postprocessing/base.py' 2021-07-10T13:12:35,572 adding 'chemlab/graphics/postprocessing/fxaa.py' 2021-07-10T13:12:35,573 adding 'chemlab/graphics/postprocessing/gamma.py' 2021-07-10T13:12:35,575 adding 'chemlab/graphics/postprocessing/glow.py' 2021-07-10T13:12:35,576 adding 'chemlab/graphics/postprocessing/noeffect.py' 2021-07-10T13:12:35,578 adding 'chemlab/graphics/postprocessing/outline.py' 2021-07-10T13:12:35,580 adding 'chemlab/graphics/postprocessing/ssao.py' 2021-07-10T13:12:35,581 adding 'chemlab/graphics/postprocessing/shaders/__init__.py' 2021-07-10T13:12:35,583 adding 'chemlab/graphics/postprocessing/shaders/fxaa.frag' 2021-07-10T13:12:35,584 adding 'chemlab/graphics/postprocessing/shaders/gamma.frag' 2021-07-10T13:12:35,585 adding 'chemlab/graphics/postprocessing/shaders/glow1.frag' 2021-07-10T13:12:35,586 adding 'chemlab/graphics/postprocessing/shaders/glow2.frag' 2021-07-10T13:12:35,587 adding 'chemlab/graphics/postprocessing/shaders/glow3.frag' 2021-07-10T13:12:35,588 adding 'chemlab/graphics/postprocessing/shaders/noeffect.frag' 2021-07-10T13:12:35,590 adding 'chemlab/graphics/postprocessing/shaders/noeffect.vert' 2021-07-10T13:12:35,591 adding 'chemlab/graphics/postprocessing/shaders/outline.frag' 2021-07-10T13:12:35,592 adding 'chemlab/graphics/postprocessing/shaders/ssao.frag' 2021-07-10T13:12:35,593 adding 'chemlab/graphics/postprocessing/shaders/ssao_blur.frag' 2021-07-10T13:12:35,594 adding 'chemlab/graphics/postprocessing/shaders/text.frag' 2021-07-10T13:12:35,595 adding 'chemlab/graphics/postprocessing/shaders/text.vert' 2021-07-10T13:12:35,598 adding 'chemlab/graphics/renderers/__init__.py' 2021-07-10T13:12:35,599 adding 'chemlab/graphics/renderers/arrow.py' 2021-07-10T13:12:35,600 adding 'chemlab/graphics/renderers/atom.py' 2021-07-10T13:12:35,601 adding 'chemlab/graphics/renderers/ballandstick.py' 2021-07-10T13:12:35,603 adding 'chemlab/graphics/renderers/base.py' 2021-07-10T13:12:35,604 adding 'chemlab/graphics/renderers/bond.py' 2021-07-10T13:12:35,606 adding 'chemlab/graphics/renderers/box.py' 2021-07-10T13:12:35,608 adding 'chemlab/graphics/renderers/cylinder.py' 2021-07-10T13:12:35,609 adding 'chemlab/graphics/renderers/cylinder_imp.py' 2021-07-10T13:12:35,611 adding 'chemlab/graphics/renderers/line.py' 2021-07-10T13:12:35,612 adding 'chemlab/graphics/renderers/point.py' 2021-07-10T13:12:35,614 adding 'chemlab/graphics/renderers/sphere.py' 2021-07-10T13:12:35,615 adding 'chemlab/graphics/renderers/sphere_imp.py' 2021-07-10T13:12:35,617 adding 'chemlab/graphics/renderers/triangles.py' 2021-07-10T13:12:35,810 adding 'chemlab/graphics/renderers/utils.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:12:35,819 adding 'chemlab/graphics/renderers/wireframe.py' 2021-07-10T13:12:35,821 adding 'chemlab/graphics/renderers/shaders/__init__.py' 2021-07-10T13:12:35,822 adding 'chemlab/graphics/renderers/shaders/cylinderimp.frag' 2021-07-10T13:12:35,823 adding 'chemlab/graphics/renderers/shaders/cylinderimp.vert' 2021-07-10T13:12:35,824 adding 'chemlab/graphics/renderers/shaders/default_light.frag' 2021-07-10T13:12:35,825 adding 'chemlab/graphics/renderers/shaders/default_persp.vert' 2021-07-10T13:12:35,826 adding 'chemlab/graphics/renderers/shaders/no_light.frag' 2021-07-10T13:12:35,828 adding 'chemlab/graphics/renderers/shaders/sphereimp.frag' 2021-07-10T13:12:35,829 adding 'chemlab/graphics/renderers/shaders/sphereimp.vert' 2021-07-10T13:12:35,831 adding 'chemlab/graphics/renderers/shaders/sphereimp_writenormal.frag' 2021-07-10T13:12:35,832 adding 'chemlab/io/__init__.py' 2021-07-10T13:12:35,834 adding 'chemlab/io/datafile.py' 2021-07-10T13:12:35,835 adding 'chemlab/io/textutils.py' 2021-07-10T13:12:35,836 adding 'chemlab/io/trajectory.py' 2021-07-10T13:12:35,838 adding 'chemlab/io/handlers/__init__.py' 2021-07-10T13:12:35,839 adding 'chemlab/io/handlers/_cclib.py' 2021-07-10T13:12:35,841 adding 'chemlab/io/handlers/base.py' 2021-07-10T13:12:35,842 adding 'chemlab/io/handlers/cif.py' 2021-07-10T13:12:35,843 adding 'chemlab/io/handlers/cml.py' 2021-07-10T13:12:35,845 adding 'chemlab/io/handlers/edr.py' 2021-07-10T13:12:35,846 adding 'chemlab/io/handlers/gamess.py' 2021-07-10T13:12:35,848 adding 'chemlab/io/handlers/gro.py' 2021-07-10T13:12:35,850 adding 'chemlab/io/handlers/gro_map.py' 2021-07-10T13:12:35,851 adding 'chemlab/io/handlers/hdf.py' 2021-07-10T13:12:35,852 adding 'chemlab/io/handlers/mol.py' 2021-07-10T13:12:35,854 adding 'chemlab/io/handlers/mol2.py' 2021-07-10T13:12:35,856 adding 'chemlab/io/handlers/pdb.py' 2021-07-10T13:12:35,858 adding 'chemlab/io/handlers/tinker.py' 2021-07-10T13:12:35,859 adding 'chemlab/io/handlers/utils.py' 2021-07-10T13:12:35,860 adding 'chemlab/io/handlers/xtctrr.py' 2021-07-10T13:12:35,862 adding 'chemlab/io/handlers/xyz.py' 2021-07-10T13:12:35,864 adding 'chemlab/libs/__init__.py' 2021-07-10T13:12:35,865 adding 'chemlab/libs/chemspipy.py' 2021-07-10T13:12:35,867 adding 'chemlab/libs/cirpy.py' 2021-07-10T13:12:36,093 adding 'chemlab/libs/ckdtree.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:12:36,105 adding 'chemlab/libs/periodic_kdtree.py' 2021-07-10T13:12:36,106 adding 'chemlab/libs/termcolor.py' 2021-07-10T13:12:36,108 adding 'chemlab/libs/pyxdr/__init__.py' 2021-07-10T13:12:36,237 adding 'chemlab/libs/pyxdr/_xdrfile.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:12:36,243 adding 'chemlab/md/__init__.py' 2021-07-10T13:12:36,244 adding 'chemlab/md/analysis.py' 2021-07-10T13:12:36,245 adding 'chemlab/md/energy.py' 2021-07-10T13:12:36,247 adding 'chemlab/md/potential.py' 2021-07-10T13:12:36,248 adding 'chemlab/md/simulation.py' 2021-07-10T13:12:36,250 adding 'chemlab/mviewer/QIPythonWidget.py' 2021-07-10T13:12:36,251 adding 'chemlab/mviewer/__init__.py' 2021-07-10T13:12:36,253 adding 'chemlab/mviewer/events.py' 2021-07-10T13:12:36,254 adding 'chemlab/mviewer/qtmolecularviewer.py' 2021-07-10T13:12:36,256 adding 'chemlab/mviewer/api/__init__.py' 2021-07-10T13:12:36,257 adding 'chemlab/mviewer/api/appeareance.py' 2021-07-10T13:12:36,259 adding 'chemlab/mviewer/api/core.py' 2021-07-10T13:12:36,260 adding 'chemlab/mviewer/api/display.py' 2021-07-10T13:12:36,262 adding 'chemlab/mviewer/api/init.py' 2021-07-10T13:12:36,263 adding 'chemlab/mviewer/api/selections.py' 2021-07-10T13:12:36,264 adding 'chemlab/mviewer/api/ui.py' 2021-07-10T13:12:36,266 adding 'chemlab/mviewer/representations/__init__.py' 2021-07-10T13:12:36,268 adding 'chemlab/mviewer/representations/ballandstick.py' 2021-07-10T13:12:36,270 adding 'chemlab/mviewer/representations/obsarray.py' 2021-07-10T13:12:36,271 adding 'chemlab/mviewer/representations/state.py' 2021-07-10T13:12:36,272 adding 'chemlab/mviewer/representations/vdw.py' 2021-07-10T13:12:36,275 adding 'chemlab/notebook/__init__.py' 2021-07-10T13:12:36,276 adding 'chemlab/notebook/display.py' 2021-07-10T13:12:36,278 adding 'chemlab/qc/__init__.py' 2021-07-10T13:12:36,280 adding 'chemlab/qc/cgbf.py' 2021-07-10T13:12:36,281 adding 'chemlab/qc/one.py' 2021-07-10T13:12:36,283 adding 'chemlab/qc/pgbf.py' 2021-07-10T13:12:36,285 adding 'chemlab/qc/utils.py' 2021-07-10T13:12:36,286 adding 'chemlab/qc/wavefunction.py' 2021-07-10T13:12:36,288 adding 'chemlab/resources/__init__.py' 2021-07-10T13:12:36,289 adding 'chemlab/resources/hide_icon.svg' 2021-07-10T13:12:36,291 adding 'chemlab/resources/pause_icon.svg' 2021-07-10T13:12:36,292 adding 'chemlab/resources/play_icon.svg' 2021-07-10T13:12:36,293 adding 'chemlab/resources/select_atoms.svg' 2021-07-10T13:12:36,295 adding 'chemlab/resources/select_molecules.svg' 2021-07-10T13:12:36,296 adding 'chemlab/resources/settings_icon.svg' 2021-07-10T13:12:36,297 adding 'chemlab/resources/show_icon.svg' 2021-07-10T13:12:36,300 adding 'chemlab/utils/__init__.py' 2021-07-10T13:12:36,698 adding 'chemlab/utils/_covertree.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:12:36,886 adding 'chemlab/utils/cdist.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:12:37,108 adding 'chemlab/utils/celllinkedlist.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:12:37,118 adding 'chemlab/utils/covertree.py' 2021-07-10T13:12:37,120 adding 'chemlab/utils/distances.py' 2021-07-10T13:12:37,121 adding 'chemlab/utils/formula.py' 2021-07-10T13:12:37,122 adding 'chemlab/utils/geometry.py' 2021-07-10T13:12:37,123 adding 'chemlab/utils/neighbors.py' 2021-07-10T13:12:37,125 adding 'chemlab/utils/pbc.py' 2021-07-10T13:12:37,126 adding 'chemlab/utils/progressbar.py' 2021-07-10T13:12:37,129 adding 'chemlab-1.0b1.data/scripts/chemlab' 2021-07-10T13:12:37,131 adding 'examples/__init__.py' 2021-07-10T13:12:37,132 adding 'examples/nacl.py' 2021-07-10T13:12:37,133 adding 'examples/offline_rendering.py' 2021-07-10T13:12:37,135 adding 'examples/tetrahedra_tutorial.py' 2021-07-10T13:12:37,136 adding 'examples/view_trajectory.py' 2021-07-10T13:12:37,138 adding 'tests/__init__.py' 2021-07-10T13:12:37,142 adding 'tests/mock.py' 2021-07-10T13:12:37,144 adding 'tests/test_base.py' 2021-07-10T13:12:37,146 adding 'tests/test_core.py' 2021-07-10T13:12:37,148 adding 'tests/test_covertree.py' 2021-07-10T13:12:37,149 adding 'tests/test_db.py' 2021-07-10T13:12:37,151 adding 'tests/test_io.py' 2021-07-10T13:12:37,152 adding 'tests/test_md.py' 2021-07-10T13:12:37,153 adding 'tests/test_table.py' 2021-07-10T13:12:37,154 adding 'tests/test_trajectory.py' 2021-07-10T13:12:37,155 adding 'tests/test_utils.py' 2021-07-10T13:12:37,157 adding 'tests/testtools.py' 2021-07-10T13:12:37,163 adding 'chemlab-1.0b1.dist-info/COPYING' 2021-07-10T13:12:37,164 adding 'chemlab-1.0b1.dist-info/METADATA' 2021-07-10T13:12:37,165 adding 'chemlab-1.0b1.dist-info/WHEEL' 2021-07-10T13:12:37,166 adding 'chemlab-1.0b1.dist-info/top_level.txt' 2021-07-10T13:12:37,169 adding 'chemlab-1.0b1.dist-info/RECORD' 2021-07-10T13:12:37,216 removing build/bdist.linux-armv7l/wheel 2021-07-10T13:12:37,800 Building wheel for chemlab (setup.py): finished with status 'done' 2021-07-10T13:12:37,841 Created wheel for chemlab: filename=chemlab-1.0b1-cp39-cp39-linux_armv7l.whl size=2704235 sha256=01759ff6bcf247337fc81e17bade582f937b96dd51011fd0834f548faeea4df3 2021-07-10T13:12:37,841 Stored in directory: /tmp/pip-ephem-wheel-cache-f2n818am/wheels/d3/70/53/10fbd44f0d201875533bf8c48d2a487de0bb1780730d992192 2021-07-10T13:12:37,860 Successfully built chemlab 2021-07-10T13:12:37,950 Removed build tracker: '/tmp/pip-req-tracker-s_9lb5w3'