2021-07-10T13:35:39,449 Created temporary directory: /tmp/pip-ephem-wheel-cache-_s0_53yf 2021-07-10T13:35:39,452 Created temporary directory: /tmp/pip-req-tracker-u5j1bhc6 2021-07-10T13:35:39,452 Initialized build tracking at /tmp/pip-req-tracker-u5j1bhc6 2021-07-10T13:35:39,452 Created build tracker: /tmp/pip-req-tracker-u5j1bhc6 2021-07-10T13:35:39,453 Entered build tracker: /tmp/pip-req-tracker-u5j1bhc6 2021-07-10T13:35:39,453 Created temporary directory: /tmp/pip-wheel-5z22inoi 2021-07-10T13:35:39,487 1 location(s) to search for versions of centrosome: 2021-07-10T13:35:39,487 * https://pypi.org/simple/centrosome/ 2021-07-10T13:35:39,488 Fetching project page and analyzing links: https://pypi.org/simple/centrosome/ 2021-07-10T13:35:39,488 Getting page https://pypi.org/simple/centrosome/ 2021-07-10T13:35:39,490 Found index url https://pypi.org/simple 2021-07-10T13:35:39,693 Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ef/32/0ebe5dd08e33dcddbf5acc9458f73fbfacbf0b1a86b1a02bc5600ea1ecb3/centrosome-1.0.1-cp27-none-macosx_10_10_x86_64.whl#sha256=82e6f56ba6a494bf9e9094a6a1e6a4a399b0ad83194d6820903899dc1f7bf223 (from https://pypi.org/simple/centrosome/) 2021-07-10T13:35:39,694 Found link https://files.pythonhosted.org/packages/d5/5b/39c53336367d2e76ef3e3698d1864f29d9e3f71e11fa6e44edb34f80ee7e/centrosome-1.0.1.tar.gz#sha256=1e6ad1eb53e5ffc911db3d89d1fa69e6a9b94602c378e0be56836a9f3c0d1f98 (from https://pypi.org/simple/centrosome/), version: 1.0.1 2021-07-10T13:35:39,694 Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fb/5c/9d92237bfe242d4407c5e6129e2e7c3467e3dd90e81f1a4e53708638b42d/centrosome-1.0.2-cp27-none-macosx_10_10_intel.whl#sha256=420875a01d797fe1497368c5fca837dbbe38b31c12a9288ea548c2d8596cd942 (from https://pypi.org/simple/centrosome/) 2021-07-10T13:35:39,695 Found link https://files.pythonhosted.org/packages/53/a1/c0ddccf5afab91da1d244230d97e033e8ba46a6f8ffdabb5cf787cbd7c46/centrosome-1.0.2.tar.gz#sha256=f2ca282de415e3c5051456b83cfe2defb9cd04299cebe3af86820ffea46567ac (from https://pypi.org/simple/centrosome/), version: 1.0.2 2021-07-10T13:35:39,695 Found link https://files.pythonhosted.org/packages/1e/35/029b29583069050f7102777139c26f1c956684ee3cf5ff5be677ca567e4b/centrosome-1.0.3.tar.gz#sha256=852910ae30baae1e590f5db11385801156b3cbb9dfd5b413ffca73cc986a878d (from https://pypi.org/simple/centrosome/), version: 1.0.3 2021-07-10T13:35:39,695 Found link https://files.pythonhosted.org/packages/d5/06/7b563c0df0b04797b6003313ee76800ee03188d9caa40e1d2c22336c90f1/centrosome-1.0.4.tar.gz#sha256=e7a952e427f8cccb16e5ba7fe71f6f28dc242ca0b96b5bd83399928cb55530e3 (from https://pypi.org/simple/centrosome/), version: 1.0.4 2021-07-10T13:35:39,695 Found link https://files.pythonhosted.org/packages/fc/75/8bd2734c337bccbc5bbc863cf8ec262abedd3bb1173136cb168ae07312ca/centrosome-1.0.5.tar.gz#sha256=45aa7c64117058a81308b08a9d35b54e64ed4a0ac5325c9e880fe85fff5cd535 (from https://pypi.org/simple/centrosome/), version: 1.0.5 2021-07-10T13:35:39,696 Found link https://files.pythonhosted.org/packages/2e/0d/b02aec55505c9c6bf086ae925c84cac69a6d8e5d4ecc43439fcab1a237db/centrosome-1.0.6.tar.gz#sha256=474b9d992458186f1da038fe43da9997a63ebb11cc5c9383cdeae41f528d6552 (from https://pypi.org/simple/centrosome/), version: 1.0.6 2021-07-10T13:35:39,696 Found link https://files.pythonhosted.org/packages/15/72/ad891b9111e74d85dc9245c34e01817ded2dfc5c3be25dd9037b100ff1ae/centrosome-1.0.7.tar.gz#sha256=659d8ab5fb207d870832df9d5a2c844be7a9d1259fabad0a2b2b14250b505de2 (from https://pypi.org/simple/centrosome/), version: 1.0.7 2021-07-10T13:35:39,696 Found link https://files.pythonhosted.org/packages/bf/43/0f7a68d756c9f5667f61d12d0b8a6016f8b0b857204b8ff83ebef973ebc8/centrosome-1.0.8.tar.gz#sha256=47dc3abcb9f4b184ad9f875bf854d3fe221628de3e5999410dba66d3873f11f6 (from https://pypi.org/simple/centrosome/), version: 1.0.8 2021-07-10T13:35:39,697 Found link https://files.pythonhosted.org/packages/eb/8a/318cf9ffff05c494d490dd04db77a7646a361b69ec039f23b9251c10b725/centrosome-1.0.9.tar.gz#sha256=114fa352c11d601c6d8c422f001c95e91cdff2335a4254c79ff7c8d0bd66afd7 (from https://pypi.org/simple/centrosome/), version: 1.0.9 2021-07-10T13:35:39,697 Found link https://files.pythonhosted.org/packages/7a/d5/cd779a0a3f70c7f343a499d56a93cd4bed8e3cac857279d48db426f3adb1/centrosome-1.1.2.tar.gz#sha256=021a8c68ff5e03ce47d33e8e9aa61e342834c02225688d63fda4b8415acb4a32 (from https://pypi.org/simple/centrosome/), version: 1.1.2 2021-07-10T13:35:39,697 Found link https://files.pythonhosted.org/packages/7b/1e/e7471f3ab26ee17ada5fb13c51b3cd368f2a716bec576568884fbea7ac42/centrosome-1.1.4.tar.gz#sha256=04d56a25f2c5420cc8b5cebcc60f687f266742083211376e2d70b69b5fa0afb0 (from https://pypi.org/simple/centrosome/), version: 1.1.4 2021-07-10T13:35:39,697 Found link https://files.pythonhosted.org/packages/a3/a9/2ff82b223acda9404ef1d0c2aace37fde9c7266e80e1e2e959da60da8012/centrosome-1.1.5.tar.gz#sha256=b1dfbe45c3755837a350a855f47123ed306fdd306726fd0c69bb0900b38a5b4c (from https://pypi.org/simple/centrosome/), version: 1.1.5 2021-07-10T13:35:39,698 Found link https://files.pythonhosted.org/packages/8e/4d/246b4e375be61fb6a51a4511d749cb5aa845dc5e61d799eece6a1a87f7d1/centrosome-1.1.6.tar.gz#sha256=b253df00a19f51887de660033a28cac573930cf24b59a43599d9f4d60e12e9e8 (from https://pypi.org/simple/centrosome/), version: 1.1.6 2021-07-10T13:35:39,698 Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/87/07/1368796bbf9e61e307e73c8370a6eab1c76b23d2c0e66594a3b6b11575d5/centrosome-1.1.7-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=18df933288b1728b5e26a4f481689d8dbc7b043c70f56853f1f6c9de53366fca (from https://pypi.org/simple/centrosome/) 2021-07-10T13:35:39,698 Found link https://files.pythonhosted.org/packages/ac/01/7f46b624571a67082e8db4c2441609eefe05c655b3baca71316025122d95/centrosome-1.1.7.tar.gz#sha256=d82d14e0488ef93ef7872e73306d7481d605ca7eb46ce529d2d08d45783fce17 (from https://pypi.org/simple/centrosome/), version: 1.1.7 2021-07-10T13:35:39,699 Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ea/d8/7cda6ed98b8a45f79cba773ec6f9fd0034dc30596b518f76e34f38b05788/centrosome-1.2.0-cp38-cp38-macosx_10_15_x86_64.whl#sha256=06824e698104afabfd9f41e7ac479f26543fe55f1859d2540779621edf050d16 (from https://pypi.org/simple/centrosome/) 2021-07-10T13:35:39,699 Found link https://files.pythonhosted.org/packages/61/c7/e1a31b6a092a5b91952fe96801b2d3167fcb3bad8386c023dd83de4c4ab8/centrosome-1.2.0.tar.gz#sha256=c0b834e2e749c586077af95ab307c15d9bf498c4667f6031b0915efb94674bff (from https://pypi.org/simple/centrosome/), version: 1.2.0 2021-07-10T13:35:39,699 Skipping link: not a file: https://pypi.org/simple/centrosome/ 2021-07-10T13:35:39,702 Given no hashes to check 1 links for project 'centrosome': discarding no candidates 2021-07-10T13:35:39,721 Collecting centrosome==1.0.4 2021-07-10T13:35:39,723 Created temporary directory: /tmp/pip-unpack-iuhmap8d 2021-07-10T13:35:39,930 Downloading centrosome-1.0.4.tar.gz (631 kB) 2021-07-10T13:35:41,054 Added centrosome==1.0.4 from https://files.pythonhosted.org/packages/d5/06/7b563c0df0b04797b6003313ee76800ee03188d9caa40e1d2c22336c90f1/centrosome-1.0.4.tar.gz#sha256=e7a952e427f8cccb16e5ba7fe71f6f28dc242ca0b96b5bd83399928cb55530e3 to build tracker '/tmp/pip-req-tracker-u5j1bhc6' 2021-07-10T13:35:41,055 Running setup.py (path:/tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8/setup.py) egg_info for package centrosome 2021-07-10T13:35:41,056 Created temporary directory: /tmp/pip-pip-egg-info-d42oriek 2021-07-10T13:35:41,056 Running command python setup.py egg_info 2021-07-10T13:35:42,769 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8/centrosome/_fastemd.pyx 2021-07-10T13:35:42,770 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:35:45,656 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8/centrosome/_convex_hull.pyx 2021-07-10T13:35:45,656 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:35:47,333 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8/centrosome/_cpmorphology2.pyx 2021-07-10T13:35:47,333 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:35:49,863 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8/centrosome/_filter.pyx 2021-07-10T13:35:49,864 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:35:52,460 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8/centrosome/_lapjv.pyx 2021-07-10T13:35:52,461 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:35:53,893 warning: centrosome/_lapjv.pyx:280:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:35:53,893 warning: centrosome/_lapjv.pyx:280:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. 2021-07-10T13:35:54,349 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8/centrosome/_propagate.pyx 2021-07-10T13:35:54,349 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T13:35:58,106 Compiling centrosome/_propagate.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T13:35:58,107 Compiling centrosome/_convex_hull.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T13:35:58,107 Compiling centrosome/_cpmorphology2.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T13:35:58,107 Compiling centrosome/_fastemd.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-10T13:35:58,107 Compiling centrosome/_filter.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T13:35:58,108 Compiling centrosome/_lapjv.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T13:35:58,108 Compiling centrosome/_propagate.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T13:35:58,108 [1/7] Cythonizing centrosome/_fastemd.pyx 2021-07-10T13:35:58,108 [2/7] Cythonizing centrosome/_convex_hull.pyx 2021-07-10T13:35:58,108 [3/7] Cythonizing centrosome/_cpmorphology2.pyx 2021-07-10T13:35:58,109 [4/7] Cythonizing centrosome/_filter.pyx 2021-07-10T13:35:58,109 [5/7] Cythonizing centrosome/_lapjv.pyx 2021-07-10T13:35:58,109 [6/7] Cythonizing centrosome/_propagate.pyx 2021-07-10T13:35:58,109 [7/7] Cythonizing centrosome/_propagate.pyx 2021-07-10T13:36:09,283 running egg_info 2021-07-10T13:36:09,285 creating /tmp/pip-pip-egg-info-d42oriek/centrosome.egg-info 2021-07-10T13:36:09,286 writing /tmp/pip-pip-egg-info-d42oriek/centrosome.egg-info/PKG-INFO 2021-07-10T13:36:09,288 writing dependency_links to /tmp/pip-pip-egg-info-d42oriek/centrosome.egg-info/dependency_links.txt 2021-07-10T13:36:09,290 writing requirements to /tmp/pip-pip-egg-info-d42oriek/centrosome.egg-info/requires.txt 2021-07-10T13:36:09,292 writing top-level names to /tmp/pip-pip-egg-info-d42oriek/centrosome.egg-info/top_level.txt 2021-07-10T13:36:09,293 writing manifest file '/tmp/pip-pip-egg-info-d42oriek/centrosome.egg-info/SOURCES.txt' 2021-07-10T13:36:09,490 reading manifest file '/tmp/pip-pip-egg-info-d42oriek/centrosome.egg-info/SOURCES.txt' 2021-07-10T13:36:09,492 reading manifest template 'MANIFEST.in' 2021-07-10T13:36:09,611 adding license file 'LICENSE' 2021-07-10T13:36:09,626 writing manifest file '/tmp/pip-pip-egg-info-d42oriek/centrosome.egg-info/SOURCES.txt' 2021-07-10T13:36:09,811 Source in /tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8 has version 1.0.4, which satisfies requirement centrosome==1.0.4 from https://files.pythonhosted.org/packages/d5/06/7b563c0df0b04797b6003313ee76800ee03188d9caa40e1d2c22336c90f1/centrosome-1.0.4.tar.gz#sha256=e7a952e427f8cccb16e5ba7fe71f6f28dc242ca0b96b5bd83399928cb55530e3 2021-07-10T13:36:09,812 Removed centrosome==1.0.4 from https://files.pythonhosted.org/packages/d5/06/7b563c0df0b04797b6003313ee76800ee03188d9caa40e1d2c22336c90f1/centrosome-1.0.4.tar.gz#sha256=e7a952e427f8cccb16e5ba7fe71f6f28dc242ca0b96b5bd83399928cb55530e3 from build tracker '/tmp/pip-req-tracker-u5j1bhc6' 2021-07-10T13:36:09,816 Created temporary directory: /tmp/pip-unpack-rkmisisy 2021-07-10T13:36:09,817 Building wheels for collected packages: centrosome 2021-07-10T13:36:09,821 Created temporary directory: /tmp/pip-wheel-k5l6ki2o 2021-07-10T13:36:09,822 Building wheel for centrosome (setup.py): started 2021-07-10T13:36:09,822 Destination directory: /tmp/pip-wheel-k5l6ki2o 2021-07-10T13:36:09,822 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-5z22inoi/centrosome_d63447f425214eeaa33c3eaa4cd8abe8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-k5l6ki2o 2021-07-10T13:36:12,155 running bdist_wheel 2021-07-10T13:36:12,159 running build 2021-07-10T13:36:12,159 running build_py 2021-07-10T13:36:12,301 creating build 2021-07-10T13:36:12,301 creating build/lib.linux-armv7l-3.9 2021-07-10T13:36:12,302 creating build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,303 copying centrosome/mode.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,305 copying centrosome/threshold.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,308 copying centrosome/rankorder.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,310 copying centrosome/otsu.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,312 copying centrosome/haralick.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,314 copying centrosome/cpmorphology.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,321 copying centrosome/radial_power_spectrum.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,323 copying centrosome/zernike.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,325 copying centrosome/princomp.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,327 copying centrosome/smooth.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,329 copying centrosome/index.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,331 copying centrosome/propagate.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,334 copying centrosome/outline.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,336 copying centrosome/lapjv.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,339 copying centrosome/watershed.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,341 copying centrosome/fastemd.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,343 copying centrosome/filter.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,347 copying centrosome/kirsch.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,349 copying centrosome/bg_compensate.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,352 copying centrosome/__init__.py -> build/lib.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,356 running build_ext 2021-07-10T13:36:12,639 building '_cpmorphology' extension 2021-07-10T13:36:12,640 creating build/temp.linux-armv7l-3.9 2021-07-10T13:36:12,640 creating build/temp.linux-armv7l-3.9/centrosome 2021-07-10T13:36:12,641 creating build/temp.linux-armv7l-3.9/centrosome/src 2021-07-10T13:36:12,641 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/src/_cpmorphology.c -o build/temp.linux-armv7l-3.9/centrosome/src/_cpmorphology.o 2021-07-10T13:36:13,003 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T13:36:13,003 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:36:13,003 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:36:13,004 from centrosome/src/_cpmorphology.c:25: 2021-07-10T13:36:13,004 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:36:13,004 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:36:13,005 | ^~~~~~~ 2021-07-10T13:36:13,038 centrosome/src/_cpmorphology.c: In function ‘cpmaximum’: 2021-07-10T13:36:13,038 centrosome/src/_cpmorphology.c:111:25: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration] 2021-07-10T13:36:13,039 111 | *(slots[i]) = PyInt_AsLong(obDim); 2021-07-10T13:36:13,039 | ^~~~~~~~~~~~ 2021-07-10T13:36:13,039 | PyLong_AsLong 2021-07-10T13:36:13,051 centrosome/src/_cpmorphology.c:236:20: warning: implicit declaration of function ‘PyString_FromString’; did you mean ‘PyLong_FromString’? [-Wimplicit-function-declaration] 2021-07-10T13:36:13,051 236 | output = PyString_FromString(error); 2021-07-10T13:36:13,051 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T13:36:13,052 | PyLong_FromString 2021-07-10T13:36:13,052 centrosome/src/_cpmorphology.c:236:18: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-10T13:36:13,052 236 | output = PyString_FromString(error); 2021-07-10T13:36:13,052 | ^ 2021-07-10T13:36:13,059 centrosome/src/_cpmorphology.c: In function ‘init_cpmorphology’: 2021-07-10T13:36:13,059 centrosome/src/_cpmorphology.c:251:5: warning: implicit declaration of function ‘Py_InitModule’ [-Wimplicit-function-declaration] 2021-07-10T13:36:13,060 251 | Py_InitModule("_cpmorphology", methods); 2021-07-10T13:36:13,061 | ^~~~~~~~~~~~~ 2021-07-10T13:36:13,063 centrosome/src/_cpmorphology.c:253:1: warning: control reaches end of non-void function [-Wreturn-type] 2021-07-10T13:36:13,063 253 | } 2021-07-10T13:36:13,063 | ^ 2021-07-10T13:36:13,066 At top level: 2021-07-10T13:36:13,067 centrosome/src/_cpmorphology.c:27:13: warning: ‘to_stdout’ defined but not used [-Wunused-function] 2021-07-10T13:36:13,067 27 | static void to_stdout(const char *text) 2021-07-10T13:36:13,067 | ^~~~~~~~~ 2021-07-10T13:36:13,430 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/src/_cpmorphology.o -o build/lib.linux-armv7l-3.9/_cpmorphology.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:36:13,541 building '_propagate' extension 2021-07-10T13:36:13,542 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_propagate.c -o build/temp.linux-armv7l-3.9/centrosome/_propagate.o 2021-07-10T13:36:13,921 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T13:36:13,922 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:36:13,922 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:36:13,922 from centrosome/_propagate.c:624: 2021-07-10T13:36:13,922 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:36:13,922 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:36:13,922 | ^~~~~~~ 2021-07-10T13:36:14,011 centrosome/_propagate.c: In function ‘__pyx_f_10centrosome_4heap_heap_from_numpy2’: 2021-07-10T13:36:14,013 centrosome/_propagate.c:4798:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare] 2021-07-10T13:36:14,013 4798 | if (((__pyx_t_4 > __pyx_t_3) != 0)) { 2021-07-10T13:36:14,013 | ^ 2021-07-10T13:36:14,045 centrosome/_propagate.c: In function ‘__pyx_pymod_exec__propagate’: 2021-07-10T13:36:14,047 centrosome/_propagate.c:6302:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion] 2021-07-10T13:36:14,048 6302 | import_array(); 2021-07-10T13:36:14,048 | ^~~~~~~~~~~~ 2021-07-10T13:36:18,685 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_propagate.o -o build/lib.linux-armv7l-3.9/_propagate.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:36:18,819 building 'centrosome._convex_hull' extension 2021-07-10T13:36:18,820 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_convex_hull.cpp -o build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o 2021-07-10T13:36:19,120 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T13:36:19,121 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:36:19,121 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:36:19,121 from centrosome/_convex_hull.cpp:640: 2021-07-10T13:36:19,121 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:36:19,122 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:36:19,122 | ^~~~~~~ 2021-07-10T13:36:26,695 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o -o build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:36:26,882 building 'centrosome._cpmorphology2' extension 2021-07-10T13:36:26,882 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_cpmorphology2.cpp -o build/temp.linux-armv7l-3.9/centrosome/_cpmorphology2.o 2021-07-10T13:36:27,170 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T13:36:27,170 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:36:27,170 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:36:27,170 from centrosome/_cpmorphology2.cpp:640: 2021-07-10T13:36:27,170 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:36:27,171 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:36:27,171 | ^~~~~~~ 2021-07-10T13:36:28,433 centrosome/_cpmorphology2.cpp: In function ‘PyObject* __pyx_pf_10centrosome_14_cpmorphology2_8index_lookup(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyObject*, PyObject*)’: 2021-07-10T13:36:28,433 centrosome/_cpmorphology2.cpp:6191:29: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_5numpy_uint32_t’ {aka ‘long unsigned int’} [-Wsign-compare] 2021-07-10T13:36:28,434 6191 | __pyx_t_6 = ((__pyx_t_9 == __pyx_v_hit_count) != 0); 2021-07-10T13:36:28,434 | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ 2021-07-10T13:36:28,589 centrosome/_cpmorphology2.cpp: In function ‘int __pyx_pymod_exec__cpmorphology2(PyObject*)’: 2021-07-10T13:36:28,590 centrosome/_cpmorphology2.cpp:10431:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null] 2021-07-10T13:36:28,590 10431 | import_array(); 2021-07-10T13:36:28,590 | ^~~~~~~~~~~~ 2021-07-10T13:36:38,423 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_cpmorphology2.o -o build/lib.linux-armv7l-3.9/centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:36:38,616 building 'centrosome._fastemd' extension 2021-07-10T13:36:38,617 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_fastemd.cpp -o build/temp.linux-armv7l-3.9/centrosome/_fastemd.o 2021-07-10T13:36:38,900 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T13:36:38,900 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T13:36:38,900 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T13:36:38,901 from centrosome/_fastemd.cpp:640: 2021-07-10T13:36:38,901 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T13:36:38,901 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T13:36:38,901 | ^~~~~~~ 2021-07-10T13:36:40,455 centrosome/_fastemd.cpp: In function ‘PyObject* __pyx_pf_10centrosome_8_fastemd_emd_hat_int32(PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*)’: 2021-07-10T13:36:40,455 centrosome/_fastemd.cpp:2765:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,456 2765 | __pyx_t_10 = ((__pyx_v_plen < __pyx_v_vf.size()) != 0); 2021-07-10T13:36:40,456 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2021-07-10T13:36:40,456 centrosome/_fastemd.cpp:2798:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,456 2798 | __pyx_t_10 = ((__pyx_v_qlen < (__pyx_v_vf[0]).size()) != 0); 2021-07-10T13:36:40,456 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T13:36:40,692 In file included from centrosome/include/emd_hat.hpp:59, 2021-07-10T13:36:40,692 from centrosome/include/fastemd_hat.hpp:18, 2021-07-10T13:36:40,692 from centrosome/_fastemd.cpp:655: 2021-07-10T13:36:40,692 centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’: 2021-07-10T13:36:40,692 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:40,693 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-10T13:36:40,693 centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,693 41 | {for (NODE_T i=0; i::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’: 2021-07-10T13:36:40,694 centrosome/include/fastemd_hat.hpp:39:65: required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:40,694 centrosome/_fastemd.cpp:2597:349: required from here 2021-07-10T13:36:40,695 centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,696 centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’: 2021-07-10T13:36:40,696 centrosome/include/fastemd_hat.hpp:51:63: required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:40,696 centrosome/_fastemd.cpp:2649:346: required from here 2021-07-10T13:36:40,697 centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,735 centrosome/include/emd_hat_impl.hpp: In instantiation of ‘void fillFWithZeros(std::vector >&) [with NUM_T = long int]’: 2021-07-10T13:36:40,735 centrosome/include/emd_hat_impl.hpp:33:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-10T13:36:40,735 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:40,736 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-10T13:36:40,736 centrosome/include/emd_hat_impl.hpp:17:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,736 17 | for (NODE_T i= 0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,736 18 | for (NODE_T j= 0; j::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’: 2021-07-10T13:36:40,806 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-10T13:36:40,806 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-10T13:36:40,806 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:40,806 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-10T13:36:40,807 centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,807 255 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,807 263 | {for (NODE_T i=0; i::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’: 2021-07-10T13:36:40,843 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-10T13:36:40,843 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’ 2021-07-10T13:36:40,843 centrosome/include/fastemd_hat.hpp:39:65: required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:40,843 centrosome/_fastemd.cpp:2597:349: required from here 2021-07-10T13:36:40,843 centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,843 255 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,844 263 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,845 296 | for (NODE_T new_name_from=0; new_name_from::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’: 2021-07-10T13:36:40,854 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-10T13:36:40,854 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’ 2021-07-10T13:36:40,854 centrosome/include/fastemd_hat.hpp:51:63: required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:40,854 centrosome/_fastemd.cpp:2649:346: required from here 2021-07-10T13:36:40,854 centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,854 255 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,855 263 | {for (NODE_T i=0; i, std::allocator > >, std::allocator, std::allocator > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:40,856 296 | for (NODE_T new_name_from=0; new_name_from::compute_shortest_path(std::vector&, std::vector&, NODE_T, std::vector > >&, std::vector > >&, const std::vector&, NODE_T&) [with NUM_T = long int; NODE_T = int]’: 2021-07-10T13:36:41,050 centrosome/include/min_cost_flow.hpp:155:17: required from ‘NUM_T min_cost_flow::operator()(std::vector&, const std::vector > >&, std::vector > >&) [with NUM_T = long int]’ 2021-07-10T13:36:41,050 centrosome/include/emd_hat_impl.hpp:291:24: required from ‘NUM_T emd_hat_impl_integral_types::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-10T13:36:41,050 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-10T13:36:41,051 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-10T13:36:41,051 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:41,051 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-10T13:36:41,051 centrosome/include/min_cost_flow.hpp:321:37: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:41,051 321 | if ( (_nodes_to_Q[v], int>::value_type’ {aka ‘int’} and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:41,052 332 | if ( (_nodes_to_Q[v] >&, const std::vector&, const std::vector&, std::vector&, std::vector&) [with NUM_T = long int]’: 2021-07-10T13:36:41,058 centrosome/include/flow_utils.hpp:46:44: required from ‘void transform_flow_to_regular(std::vector >&, const std::vector&, const std::vector&) [with NUM_T = long int]’ 2021-07-10T13:36:41,058 centrosome/include/emd_hat_impl.hpp:322:70: required from ‘NUM_T emd_hat_impl_integral_types::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-10T13:36:41,058 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-10T13:36:41,059 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-10T13:36:41,059 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:41,059 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-10T13:36:41,059 centrosome/include/flow_utils.hpp:25:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:41,059 25 | for (NODE_T i= 0; i::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:41,060 26 | for (NODE_T j= 0; j::heapify(std::vector >&, std::vector&, NODE_T) [with NUM_T = long int; NODE_T = int]’: 2021-07-10T13:36:41,179 centrosome/include/min_cost_flow.hpp:392:9: required from ‘void min_cost_flow::heap_remove_first(std::vector >&, std::vector&) [with NUM_T = long int]’ 2021-07-10T13:36:41,179 centrosome/include/min_cost_flow.hpp:313:13: required from ‘void min_cost_flow::compute_shortest_path(std::vector&, std::vector&, NODE_T, std::vector > >&, std::vector > >&, const std::vector&, NODE_T&) [with NUM_T = long int; NODE_T = int]’ 2021-07-10T13:36:41,179 centrosome/include/min_cost_flow.hpp:155:17: required from ‘NUM_T min_cost_flow::operator()(std::vector&, const std::vector > >&, std::vector > >&) [with NUM_T = long int]’ 2021-07-10T13:36:41,179 centrosome/include/emd_hat_impl.hpp:291:24: required from ‘NUM_T emd_hat_impl_integral_types::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-10T13:36:41,179 centrosome/include/emd_hat_impl.hpp:368:62: required from ‘emd_hat_impl::NUM_T emd_hat_impl::operator()(const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector >&, emd_hat_impl::NUM_T, std::vector >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl::NUM_T = long int]’ 2021-07-10T13:36:41,179 centrosome/include/emd_hat_impl.hpp:57:43: required from ‘NUM_T emd_hat_gd_metric::operator()(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’ 2021-07-10T13:36:41,179 centrosome/include/fastemd_hat.hpp:28:38: required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector&, const std::vector&, const std::vector >&, NUM_T, std::vector >*) [with NUM_T = long int]’ 2021-07-10T13:36:41,180 centrosome/_fastemd.cpp:2489:330: required from here 2021-07-10T13:36:41,180 centrosome/include/min_cost_flow.hpp:405:20: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:41,180 405 | if ( (l, std::allocator > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T13:36:41,180 410 | if ( (r __pyx_t_3) != 0)) { 2021-07-10T13:37:10,482 | ~~~~~~~~~~^~~~~~~~~~~ 2021-07-10T13:37:10,517 centrosome/_propagate.cpp: In function ‘int __pyx_pymod_exec__propagate(PyObject*)’: 2021-07-10T13:37:10,517 centrosome/_propagate.cpp:6316:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null] 2021-07-10T13:37:10,517 6316 | import_array(); 2021-07-10T13:37:10,517 | ^~~~~~~~~~~~ 2021-07-10T13:37:15,328 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_propagate.o -o build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so 2021-07-10T13:37:15,534 installing to build/bdist.linux-armv7l/wheel 2021-07-10T13:37:15,534 running install 2021-07-10T13:37:15,536 running install_lib 2021-07-10T13:37:15,540 creating build/bdist.linux-armv7l 2021-07-10T13:37:15,541 creating build/bdist.linux-armv7l/wheel 2021-07-10T13:37:15,542 copying build/lib.linux-armv7l-3.9/_propagate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-10T13:37:15,552 copying build/lib.linux-armv7l-3.9/_cpmorphology.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-10T13:37:15,556 creating build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,557 copying build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,568 copying build/lib.linux-armv7l-3.9/centrosome/mode.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,570 copying build/lib.linux-armv7l-3.9/centrosome/threshold.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,574 copying build/lib.linux-armv7l-3.9/centrosome/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,589 copying build/lib.linux-armv7l-3.9/centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,626 copying build/lib.linux-armv7l-3.9/centrosome/rankorder.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,628 copying build/lib.linux-armv7l-3.9/centrosome/otsu.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,631 copying build/lib.linux-armv7l-3.9/centrosome/haralick.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,634 copying build/lib.linux-armv7l-3.9/centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,654 copying build/lib.linux-armv7l-3.9/centrosome/cpmorphology.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,662 copying build/lib.linux-armv7l-3.9/centrosome/radial_power_spectrum.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,664 copying build/lib.linux-armv7l-3.9/centrosome/zernike.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,667 copying build/lib.linux-armv7l-3.9/centrosome/princomp.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,669 copying build/lib.linux-armv7l-3.9/centrosome/smooth.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,672 copying build/lib.linux-armv7l-3.9/centrosome/index.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,675 copying build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,688 copying build/lib.linux-armv7l-3.9/centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,704 copying build/lib.linux-armv7l-3.9/centrosome/propagate.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,706 copying build/lib.linux-armv7l-3.9/centrosome/outline.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,708 copying build/lib.linux-armv7l-3.9/centrosome/lapjv.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,711 copying build/lib.linux-armv7l-3.9/centrosome/watershed.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,713 copying build/lib.linux-armv7l-3.9/centrosome/fastemd.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,715 copying build/lib.linux-armv7l-3.9/centrosome/filter.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,720 copying build/lib.linux-armv7l-3.9/centrosome/kirsch.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,722 copying build/lib.linux-armv7l-3.9/centrosome/bg_compensate.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,725 copying build/lib.linux-armv7l-3.9/centrosome/__init__.py -> build/bdist.linux-armv7l/wheel/centrosome 2021-07-10T13:37:15,726 running install_egg_info 2021-07-10T13:37:15,742 running egg_info 2021-07-10T13:37:15,742 writing centrosome.egg-info/PKG-INFO 2021-07-10T13:37:15,745 writing dependency_links to centrosome.egg-info/dependency_links.txt 2021-07-10T13:37:15,747 writing requirements to centrosome.egg-info/requires.txt 2021-07-10T13:37:15,748 writing top-level names to centrosome.egg-info/top_level.txt 2021-07-10T13:37:15,793 reading manifest file 'centrosome.egg-info/SOURCES.txt' 2021-07-10T13:37:15,867 reading manifest template 'MANIFEST.in' 2021-07-10T13:37:16,010 adding license file 'LICENSE' 2021-07-10T13:37:16,031 writing manifest file 'centrosome.egg-info/SOURCES.txt' 2021-07-10T13:37:16,034 Copying centrosome.egg-info to build/bdist.linux-armv7l/wheel/centrosome-1.0.4-py3.9.egg-info 2021-07-10T13:37:16,044 running install_scripts 2021-07-10T13:37:16,082 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-10T13:37:16,086 creating build/bdist.linux-armv7l/wheel/centrosome-1.0.4.dist-info/WHEEL 2021-07-10T13:37:16,089 creating '/tmp/pip-wheel-k5l6ki2o/centrosome-1.0.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T13:37:16,097 adding '_cpmorphology.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:37:16,163 adding '_propagate.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:37:16,166 adding 'centrosome/__init__.py' 2021-07-10T13:37:16,242 adding 'centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:37:16,369 adding 'centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:37:16,578 adding 'centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:37:16,674 adding 'centrosome/_filter.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:37:16,768 adding 'centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:37:16,840 adding 'centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T13:37:16,845 adding 'centrosome/bg_compensate.py' 2021-07-10T13:37:16,869 adding 'centrosome/cpmorphology.py' 2021-07-10T13:37:16,871 adding 'centrosome/fastemd.py' 2021-07-10T13:37:16,881 adding 'centrosome/filter.py' 2021-07-10T13:37:16,883 adding 'centrosome/haralick.py' 2021-07-10T13:37:16,885 adding 'centrosome/index.py' 2021-07-10T13:37:16,886 adding 'centrosome/kirsch.py' 2021-07-10T13:37:16,888 adding 'centrosome/lapjv.py' 2021-07-10T13:37:16,889 adding 'centrosome/mode.py' 2021-07-10T13:37:16,891 adding 'centrosome/otsu.py' 2021-07-10T13:37:16,892 adding 'centrosome/outline.py' 2021-07-10T13:37:16,894 adding 'centrosome/princomp.py' 2021-07-10T13:37:16,895 adding 'centrosome/propagate.py' 2021-07-10T13:37:16,896 adding 'centrosome/radial_power_spectrum.py' 2021-07-10T13:37:16,897 adding 'centrosome/rankorder.py' 2021-07-10T13:37:16,899 adding 'centrosome/smooth.py' 2021-07-10T13:37:16,903 adding 'centrosome/threshold.py' 2021-07-10T13:37:16,905 adding 'centrosome/watershed.py' 2021-07-10T13:37:16,907 adding 'centrosome/zernike.py' 2021-07-10T13:37:16,909 adding 'centrosome-1.0.4.dist-info/LICENSE' 2021-07-10T13:37:16,910 adding 'centrosome-1.0.4.dist-info/METADATA' 2021-07-10T13:37:16,911 adding 'centrosome-1.0.4.dist-info/WHEEL' 2021-07-10T13:37:16,912 adding 'centrosome-1.0.4.dist-info/top_level.txt' 2021-07-10T13:37:16,913 adding 'centrosome-1.0.4.dist-info/RECORD' 2021-07-10T13:37:16,935 removing build/bdist.linux-armv7l/wheel 2021-07-10T13:37:17,101 Building wheel for centrosome (setup.py): finished with status 'done' 2021-07-10T13:37:17,122 Created wheel for centrosome: filename=centrosome-1.0.4-cp39-cp39-linux_armv7l.whl size=1455328 sha256=00e6d59184c3c093363629da455c1d49ebb69ec2d411fdb04f63572f8a630af4 2021-07-10T13:37:17,122 Stored in directory: /tmp/pip-ephem-wheel-cache-_s0_53yf/wheels/85/69/e1/a84f1644e10db64acf6c69b216737bdcbf06412a04d67849e4 2021-07-10T13:37:17,133 Successfully built centrosome 2021-07-10T13:37:17,184 Removed build tracker: '/tmp/pip-req-tracker-u5j1bhc6'