2021-07-10T14:30:26,615 Created temporary directory: /tmp/pip-ephem-wheel-cache-1byg35oz 2021-07-10T14:30:26,618 Created temporary directory: /tmp/pip-req-tracker-j31im1m6 2021-07-10T14:30:26,619 Initialized build tracking at /tmp/pip-req-tracker-j31im1m6 2021-07-10T14:30:26,619 Created build tracker: /tmp/pip-req-tracker-j31im1m6 2021-07-10T14:30:26,619 Entered build tracker: /tmp/pip-req-tracker-j31im1m6 2021-07-10T14:30:26,620 Created temporary directory: /tmp/pip-wheel-ei67l_an 2021-07-10T14:30:26,653 1 location(s) to search for versions of klustakwik2: 2021-07-10T14:30:26,653 * https://pypi.org/simple/klustakwik2/ 2021-07-10T14:30:26,653 Fetching project page and analyzing links: https://pypi.org/simple/klustakwik2/ 2021-07-10T14:30:26,654 Getting page https://pypi.org/simple/klustakwik2/ 2021-07-10T14:30:26,655 Found index url https://pypi.org/simple 2021-07-10T14:30:26,757 Found link https://files.pythonhosted.org/packages/1a/d6/c9974e8c616255af108f0d944a8f5ecf6d3546511e8804c3381c5577704a/klustakwik2-0.1.0b0.tar.bz2#sha256=36190f640cae42d9a4565b054ee7803b1fd7cd0d5f7e118e636c627ccd83c23d (from https://pypi.org/simple/klustakwik2/), version: 0.1.0b0 2021-07-10T14:30:26,758 Found link https://files.pythonhosted.org/packages/92/d6/a70199d4ba94ac3d18113cc615f9f95889a606638af61d501c3dc67e27ef/klustakwik2-0.1.0b0.tar.gz#sha256=e0b7638fc7dc24f7958cae9150d1587d3605aa26d38686d290ab483234d3740b (from https://pypi.org/simple/klustakwik2/), version: 0.1.0b0 2021-07-10T14:30:26,758 Found link https://files.pythonhosted.org/packages/67/ff/a61218f8963216650da5ee80c7ce41a1359e4ddfa67a99d1465cda1ed566/klustakwik2-0.1.0b0.zip#sha256=e0d0a0d49aadbcba24a5b7a1611d6c3e59649e7179838409cccfe93347b497c5 (from https://pypi.org/simple/klustakwik2/), version: 0.1.0b0 2021-07-10T14:30:26,758 Found link https://files.pythonhosted.org/packages/f7/e1/8d1f7c3e1c35cfa44178d4640d975527846bfcf41033d9c8fd4c736858b8/klustakwik2-0.1.0.tar.bz2#sha256=dd45c7a3d3540983c1f9ec2d9d733219df627be09e8878b10539db5e5c902e5c (from https://pypi.org/simple/klustakwik2/), version: 0.1.0 2021-07-10T14:30:26,759 Found link https://files.pythonhosted.org/packages/42/60/5650e90b5f10abcb632def27109eec5a07e0f7d9f4f6668b044228f4425e/klustakwik2-0.1.0.tar.gz#sha256=eb008772e88e920a775730d850234bc73877ce034d5b774bc7d79a69bee321bf (from https://pypi.org/simple/klustakwik2/), version: 0.1.0 2021-07-10T14:30:26,759 Found link https://files.pythonhosted.org/packages/10/40/65bb0d375a6bd5a3d16dd4de829748e0964b66e9e0ec41983c4eb3e7688c/klustakwik2-0.1.0.zip#sha256=ae033329ffa70206ec1922c9b4229c63efeec42410f02c537cf13888dee7ca8c (from https://pypi.org/simple/klustakwik2/), version: 0.1.0 2021-07-10T14:30:26,759 Found link https://files.pythonhosted.org/packages/1d/a3/0ae7f737ee55436826eb946e9112d926d8eb585c043c4c46018e426d2c96/klustakwik2-0.2.0.dev0.tar.bz2#sha256=a24f2eb7947d877cded15d6dfcb453452b61d4c944bee0f7c1904f399ba6be83 (from https://pypi.org/simple/klustakwik2/), version: 0.2.0.dev0 2021-07-10T14:30:26,760 Found link https://files.pythonhosted.org/packages/e8/22/58fa76b2af0b1ec5d002c825a054488a43e6bbfe57cb9770b179f92fb2c8/klustakwik2-0.2.0.dev0.tar.gz#sha256=67ad3a76da4eda184bfe5e5d90585e2bb05793515cdfa3e26d48bbd8fd1062ac (from https://pypi.org/simple/klustakwik2/), version: 0.2.0.dev0 2021-07-10T14:30:26,760 Found link https://files.pythonhosted.org/packages/17/5f/62f475d3df5478a036610fe2b731d5ae3e8e909429e0b9d2a9afa6cec3dd/klustakwik2-0.2.0.dev0.zip#sha256=844e20e921e6b9ce1b423a197488d404f294a8688113d015753c4c5a39772880 (from https://pypi.org/simple/klustakwik2/), version: 0.2.0.dev0 2021-07-10T14:30:26,760 Found link https://files.pythonhosted.org/packages/63/08/e757b5696add47bf7ab4862dbf4601049a364ef294fc32656ddc429e9595/klustakwik2-0.2.0.tar.bz2#sha256=783b87fc4d89816ea9d586171b2d9bc3026bee49a8f7cda407528747e383f746 (from https://pypi.org/simple/klustakwik2/), version: 0.2.0 2021-07-10T14:30:26,761 Found link https://files.pythonhosted.org/packages/28/eb/815bb83c5b164317f81dc5ab55c960517b84dfb601fc751cf30387080952/klustakwik2-0.2.0.tar.gz#sha256=3172b4a0756b5176d336af6e30a4c04a5dd27e39d8ecd0252e0008b0608847e0 (from https://pypi.org/simple/klustakwik2/), version: 0.2.0 2021-07-10T14:30:26,761 Found link https://files.pythonhosted.org/packages/7f/79/b506eaf810914722b74979b52d23b27ffd933c1e8ea7a5920240ffaa59eb/klustakwik2-0.2.0.zip#sha256=6e7b4227807baca9035ea87db5ef740a7247cc94cbcd0edf72fb4775db48fb79 (from https://pypi.org/simple/klustakwik2/), version: 0.2.0 2021-07-10T14:30:26,761 Found link https://files.pythonhosted.org/packages/3a/65/7f1597859f12bab5743ce39fc3bccffa895b499d56b76c80f67d686f9def/klustakwik2-0.2.1.tar.bz2#sha256=ffe4454baf70ae69476fbd3a70724605c74e29341c4559932f4e6f6ab2132a24 (from https://pypi.org/simple/klustakwik2/), version: 0.2.1 2021-07-10T14:30:26,762 Found link https://files.pythonhosted.org/packages/4e/4a/8ad93eda1789275fc2bd9793a2db6128e1aae7bdc8f1394271000e231ff4/klustakwik2-0.2.1.tar.gz#sha256=d3eb905aeca1127756d5babca411606acda70caddd65f0fdec75f5f85bdb05a0 (from https://pypi.org/simple/klustakwik2/), version: 0.2.1 2021-07-10T14:30:26,762 Found link https://files.pythonhosted.org/packages/bb/49/d2ce65bd43a1200ea59d0c9ec7dc4685961bf0c31bba895096e34d54267f/klustakwik2-0.2.1.zip#sha256=c7a3c4d078b1a7928d1449ab45b4848260bb7b020ec6d360662ef2fb04b74714 (from https://pypi.org/simple/klustakwik2/), version: 0.2.1 2021-07-10T14:30:26,762 Found link https://files.pythonhosted.org/packages/ec/a6/1fdd5fdae30662f38be1e2c1d3294694e3e31c573c5a9c142c6e3e09c5c6/klustakwik2-0.2.2.tar.bz2#sha256=54470d2f0c8b6c403d1011f0c36109125137ddb1d73a35aff8180a5cc816ceb9 (from https://pypi.org/simple/klustakwik2/), version: 0.2.2 2021-07-10T14:30:26,762 Found link https://files.pythonhosted.org/packages/68/45/6ec4583f79a6b4828390a85824c50473ebd9ffcaebb0c024e953ffb39ea2/klustakwik2-0.2.2.tar.gz#sha256=f825c55cdf2d3dab96ee1c0255ff78629c6f8a3dffd192a458a7fe93eda23957 (from https://pypi.org/simple/klustakwik2/), version: 0.2.2 2021-07-10T14:30:26,763 Found link https://files.pythonhosted.org/packages/e7/8c/a9f0f04b632db38004da1c9f20602388610e48fe142cbf9eb1e91626dd0f/klustakwik2-0.2.2.zip#sha256=f3489f7b0f7277b6017daf49cf500e700716b07ebd242f4f48b743faa43b377e (from https://pypi.org/simple/klustakwik2/), version: 0.2.2 2021-07-10T14:30:26,763 Found link https://files.pythonhosted.org/packages/da/c7/92e6d81a3b37f73384257723e81005ceb9ef51522167cf68efd04f0b9919/klustakwik2-0.2.3.tar.bz2#sha256=d1506e7607d0ed7a64fe829acd3328ddc640f402702f20f7ce3e29e37c407b26 (from https://pypi.org/simple/klustakwik2/), version: 0.2.3 2021-07-10T14:30:26,763 Found link https://files.pythonhosted.org/packages/44/02/5266a171217e49af76dfb8b98786f23fc3ffb0aa1019958c961969ae2043/klustakwik2-0.2.3.tar.gz#sha256=04d7166c3f364c2441c0312a892f152c436039f59f3a7fcefbc4cca10a160583 (from https://pypi.org/simple/klustakwik2/), version: 0.2.3 2021-07-10T14:30:26,763 Found link https://files.pythonhosted.org/packages/88/2c/b25b5efa3cc8167a28343d1cb80751761664b3c3b4cf8b398a3f616fb008/klustakwik2-0.2.3.zip#sha256=f53fb91310b0d47aaf0d1bc24690dd5dbe17c8e1c13f23cbb558d3fab127208d (from https://pypi.org/simple/klustakwik2/), version: 0.2.3 2021-07-10T14:30:26,764 Found link https://files.pythonhosted.org/packages/10/02/c786b26d177453450bd98f3608d5a7b7a08f6f3ff471114653829329b6e3/klustakwik2-0.2.4.tar.bz2#sha256=84acee4bb81418d9418791b282053e63aa2d2303e6bf1f54d53ca5a428da16b9 (from https://pypi.org/simple/klustakwik2/), version: 0.2.4 2021-07-10T14:30:26,764 Found link https://files.pythonhosted.org/packages/27/9b/39f9f939eef7492b936a1650056cb9bf3b925df4865ee51a3c615283c179/klustakwik2-0.2.4.tar.gz#sha256=fafcd4c8ec68fa4869c725c6f5ff14b3e3dde0686a875db53c699eb7d92d791a (from https://pypi.org/simple/klustakwik2/), version: 0.2.4 2021-07-10T14:30:26,764 Found link https://files.pythonhosted.org/packages/17/5e/e0cc4f3d7b0ef58e849e094f1ba6f93f1b8b9e4c2bdf6d6f3139046591aa/klustakwik2-0.2.4.zip#sha256=ba4c7412bceee00c946476f448cd6d46afcd55e2732f4797b84ab0697b253fe0 (from https://pypi.org/simple/klustakwik2/), version: 0.2.4 2021-07-10T14:30:26,781 Skipping link: none of the wheel's tags (cp35-cp35m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/9f/99/9374d711717c7ea4b4dbe7d069b3bf0c39ffd99dda9f728e756a22721ff7/klustakwik2-0.2.5-cp35-cp35m-win_amd64.whl#sha256=7bf7b1bce6350558803b8559495877cbd48833ef2e0098f11e134127ea347d1f (from https://pypi.org/simple/klustakwik2/) 2021-07-10T14:30:26,782 Found link https://files.pythonhosted.org/packages/5c/6d/b2d4c080aebafb6db4593fb468d71631bc4ca1e6a080f5c86d4b5a0aadfc/klustakwik2-0.2.5.tar.gz#sha256=60ea38620b2c7bd37df480f034f5b96837a907da709cf029db463f477e511a3f (from https://pypi.org/simple/klustakwik2/), version: 0.2.5 2021-07-10T14:30:26,782 Skipping link: none of the wheel's tags (cp27-cp27m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/cd/12/eb680c3ee6e3effba51a8539e90d1091edc260ecfbb71e5d5dd63537695f/klustakwik2-0.2.6-cp27-cp27m-win_amd64.whl#sha256=60c03fce4bb36425b3f69360d5b441048712d22d343ed98ea8cf609ec847ebb1 (from https://pypi.org/simple/klustakwik2/) 2021-07-10T14:30:26,783 Skipping link: none of the wheel's tags (cp35-cp35m-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ac/29/3964e52e5476c5912c52dd1c51979df0aad107efe2bbb8b9fe0bd362bdd2/klustakwik2-0.2.6-cp35-cp35m-win_amd64.whl#sha256=7e11788c1fe50078cfe563b26df630b5a1d09507fcdbedcc3d463958a09c7660 (from https://pypi.org/simple/klustakwik2/) 2021-07-10T14:30:26,783 Found link https://files.pythonhosted.org/packages/fc/65/d105474b087a7e4624e7200a753ec7b37b26d2f866e31b523ff24b366ec7/klustakwik2-0.2.6.zip#sha256=fa97e786dae2877da5a9ead6b5d3b6d63f93f67dc2113b7c13f7592df85eb062 (from https://pypi.org/simple/klustakwik2/), version: 0.2.6 2021-07-10T14:30:26,784 Skipping link: none of the wheel's tags (cp27-cp27m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/1e/d2/85b391ecb17cfc75b2766aa3035b6b91cdd8ed3118676fa5f8cc46d8597d/klustakwik2-0.2.7-cp27-cp27m-manylinux1_x86_64.whl#sha256=2d9510048cc7b9cb5725ca8a2c44fdf5ad0db41fc96179a68314fe2b538caa24 (from https://pypi.org/simple/klustakwik2/) 2021-07-10T14:30:26,784 Skipping link: none of the wheel's tags (cp36-cp36m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6c/4d/840da8eb78038dec6c1b3ffdf02dfd30f02ad8c32ad64aae732c81df2f39/klustakwik2-0.2.7-cp36-cp36m-manylinux1_x86_64.whl#sha256=2c9821086513f4563446a0519181538aef08711a0a702a393ccacb7004244bcd (from https://pypi.org/simple/klustakwik2/) 2021-07-10T14:30:26,785 Skipping link: none of the wheel's tags (cp37-cp37m-manylinux1_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ee/32/5c5d17c23af19bc85a7ad5a74d1a604d47de6761af88bcc2069eafb9b9c1/klustakwik2-0.2.7-cp37-cp37m-manylinux1_x86_64.whl#sha256=09c45022f11d5c6aaa1b05d43f6d32bfda1cf079fc38f0d18810d814914953f7 (from https://pypi.org/simple/klustakwik2/) 2021-07-10T14:30:26,785 Skipping link: not a file: https://pypi.org/simple/klustakwik2/ 2021-07-10T14:30:26,789 Given no hashes to check 1 links for project 'klustakwik2': discarding no candidates 2021-07-10T14:30:26,808 Collecting klustakwik2==0.2.5 2021-07-10T14:30:26,809 Created temporary directory: /tmp/pip-unpack-pbsgiyk5 2021-07-10T14:30:27,114 Downloading klustakwik2-0.2.5.tar.gz (704 kB) 2021-07-10T14:30:27,562 Added klustakwik2==0.2.5 from https://files.pythonhosted.org/packages/5c/6d/b2d4c080aebafb6db4593fb468d71631bc4ca1e6a080f5c86d4b5a0aadfc/klustakwik2-0.2.5.tar.gz#sha256=60ea38620b2c7bd37df480f034f5b96837a907da709cf029db463f477e511a3f to build tracker '/tmp/pip-req-tracker-j31im1m6' 2021-07-10T14:30:27,563 Running setup.py (path:/tmp/pip-wheel-ei67l_an/klustakwik2_97833b35c46d4861b5b5801327ff98ca/setup.py) egg_info for package klustakwik2 2021-07-10T14:30:27,564 Created temporary directory: /tmp/pip-pip-egg-info-rpj3uenf 2021-07-10T14:30:27,564 Running command python setup.py egg_info 2021-07-10T14:30:29,492 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ei67l_an/klustakwik2_97833b35c46d4861b5b5801327ff98ca/klustakwik2/numerics/cylib/masks_cy.pyx 2021-07-10T14:30:29,492 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T14:30:36,526 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ei67l_an/klustakwik2_97833b35c46d4861b5b5801327ff98ca/klustakwik2/numerics/cylib/compute_cluster_masks_cy.pyx 2021-07-10T14:30:36,527 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T14:30:43,592 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ei67l_an/klustakwik2_97833b35c46d4861b5b5801327ff98ca/klustakwik2/numerics/cylib/compute_cluster_penalties_cy.pyx 2021-07-10T14:30:43,592 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T14:30:50,942 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ei67l_an/klustakwik2_97833b35c46d4861b5b5801327ff98ca/klustakwik2/numerics/cylib/e_step_cy.pyx 2021-07-10T14:30:50,942 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T14:31:00,640 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ei67l_an/klustakwik2_97833b35c46d4861b5b5801327ff98ca/klustakwik2/numerics/cylib/m_step_cy.pyx 2021-07-10T14:31:00,641 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-10T14:31:11,319 Compiling klustakwik2/numerics/cylib/compute_cluster_masks_cy.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T14:31:11,319 Compiling klustakwik2/numerics/cylib/compute_cluster_penalties_cy.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T14:31:11,319 Compiling klustakwik2/numerics/cylib/e_step_cy.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T14:31:11,319 Compiling klustakwik2/numerics/cylib/m_step_cy.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-10T14:31:11,319 Compiling klustakwik2/numerics/cylib/masks_cy.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd. 2021-07-10T14:31:11,320 [1/5] Cythonizing klustakwik2/numerics/cylib/masks_cy.pyx 2021-07-10T14:31:11,320 [2/5] Cythonizing klustakwik2/numerics/cylib/compute_cluster_masks_cy.pyx 2021-07-10T14:31:11,320 [3/5] Cythonizing klustakwik2/numerics/cylib/compute_cluster_penalties_cy.pyx 2021-07-10T14:31:11,320 [4/5] Cythonizing klustakwik2/numerics/cylib/e_step_cy.pyx 2021-07-10T14:31:11,320 [5/5] Cythonizing klustakwik2/numerics/cylib/m_step_cy.pyx 2021-07-10T14:31:11,463 running egg_info 2021-07-10T14:31:11,466 creating /tmp/pip-pip-egg-info-rpj3uenf/klustakwik2.egg-info 2021-07-10T14:31:11,466 writing /tmp/pip-pip-egg-info-rpj3uenf/klustakwik2.egg-info/PKG-INFO 2021-07-10T14:31:11,469 writing dependency_links to /tmp/pip-pip-egg-info-rpj3uenf/klustakwik2.egg-info/dependency_links.txt 2021-07-10T14:31:11,471 writing entry points to /tmp/pip-pip-egg-info-rpj3uenf/klustakwik2.egg-info/entry_points.txt 2021-07-10T14:31:11,473 writing top-level names to /tmp/pip-pip-egg-info-rpj3uenf/klustakwik2.egg-info/top_level.txt 2021-07-10T14:31:11,474 writing manifest file '/tmp/pip-pip-egg-info-rpj3uenf/klustakwik2.egg-info/SOURCES.txt' 2021-07-10T14:31:11,631 reading manifest file '/tmp/pip-pip-egg-info-rpj3uenf/klustakwik2.egg-info/SOURCES.txt' 2021-07-10T14:31:11,633 reading manifest template 'MANIFEST.in' 2021-07-10T14:31:11,648 warning: no files found matching '*.pyxbld' under directory 'klustakwik2/numerics/cylib' 2021-07-10T14:31:11,649 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-07-10T14:31:11,650 warning: no previously-included files matching '*.py[co]' found under directory '*' 2021-07-10T14:31:11,650 adding license file 'LICENSE' 2021-07-10T14:31:11,653 writing manifest file '/tmp/pip-pip-egg-info-rpj3uenf/klustakwik2.egg-info/SOURCES.txt' 2021-07-10T14:31:12,165 Source in /tmp/pip-wheel-ei67l_an/klustakwik2_97833b35c46d4861b5b5801327ff98ca has version 0.2.5, which satisfies requirement klustakwik2==0.2.5 from https://files.pythonhosted.org/packages/5c/6d/b2d4c080aebafb6db4593fb468d71631bc4ca1e6a080f5c86d4b5a0aadfc/klustakwik2-0.2.5.tar.gz#sha256=60ea38620b2c7bd37df480f034f5b96837a907da709cf029db463f477e511a3f 2021-07-10T14:31:12,166 Removed klustakwik2==0.2.5 from https://files.pythonhosted.org/packages/5c/6d/b2d4c080aebafb6db4593fb468d71631bc4ca1e6a080f5c86d4b5a0aadfc/klustakwik2-0.2.5.tar.gz#sha256=60ea38620b2c7bd37df480f034f5b96837a907da709cf029db463f477e511a3f from build tracker '/tmp/pip-req-tracker-j31im1m6' 2021-07-10T14:31:12,170 Created temporary directory: /tmp/pip-unpack-avjjums8 2021-07-10T14:31:12,171 Building wheels for collected packages: klustakwik2 2021-07-10T14:31:12,175 Created temporary directory: /tmp/pip-wheel-2qzogs_m 2021-07-10T14:31:12,175 Building wheel for klustakwik2 (setup.py): started 2021-07-10T14:31:12,176 Destination directory: /tmp/pip-wheel-2qzogs_m 2021-07-10T14:31:12,176 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-ei67l_an/klustakwik2_97833b35c46d4861b5b5801327ff98ca/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-ei67l_an/klustakwik2_97833b35c46d4861b5b5801327ff98ca/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-2qzogs_m 2021-07-10T14:31:14,001 running bdist_wheel 2021-07-10T14:31:14,006 running build 2021-07-10T14:31:14,006 running build_py 2021-07-10T14:31:14,141 creating build 2021-07-10T14:31:14,141 creating build/lib.linux-armv7l-3.9 2021-07-10T14:31:14,142 creating build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,143 copying klustakwik2/__init__.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,145 copying klustakwik2/logger.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,147 copying klustakwik2/monitoring.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,149 copying klustakwik2/clustering.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,153 copying klustakwik2/default_parameters.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,154 copying klustakwik2/data.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,157 copying klustakwik2/debugtools.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,160 copying klustakwik2/linear_algebra.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,162 copying klustakwik2/mask_starts.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,164 copying klustakwik2/precomputations.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,166 copying klustakwik2/input_output.py -> build/lib.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,170 creating build/lib.linux-armv7l-3.9/klustakwik2/numerics 2021-07-10T14:31:14,171 copying klustakwik2/numerics/__init__.py -> build/lib.linux-armv7l-3.9/klustakwik2/numerics 2021-07-10T14:31:14,174 creating build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,175 copying klustakwik2/numerics/cylib/__init__.py -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,177 copying klustakwik2/numerics/cylib/e_step.py -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,180 copying klustakwik2/numerics/cylib/compute_cluster_masks.py -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,182 copying klustakwik2/numerics/cylib/m_step.py -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,184 copying klustakwik2/numerics/cylib/compute_cluster_penalties.py -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,186 copying klustakwik2/numerics/cylib/masks.py -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,189 creating build/lib.linux-armv7l-3.9/klustakwik2/numerics/numbalib 2021-07-10T14:31:14,190 copying klustakwik2/numerics/numbalib/__init__.py -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/numbalib 2021-07-10T14:31:14,191 copying klustakwik2/numerics/numbalib/m_step.py -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/numbalib 2021-07-10T14:31:14,194 creating build/lib.linux-armv7l-3.9/klustakwik2/tests 2021-07-10T14:31:14,195 copying klustakwik2/tests/__init__.py -> build/lib.linux-armv7l-3.9/klustakwik2/tests 2021-07-10T14:31:14,197 copying klustakwik2/tests/test_io.py -> build/lib.linux-armv7l-3.9/klustakwik2/tests 2021-07-10T14:31:14,200 copying klustakwik2/tests/test_compute_cluster_masks.py -> build/lib.linux-armv7l-3.9/klustakwik2/tests 2021-07-10T14:31:14,202 copying klustakwik2/tests/test_mask_starts.py -> build/lib.linux-armv7l-3.9/klustakwik2/tests 2021-07-10T14:31:14,204 copying klustakwik2/tests/test_synthetic_data.py -> build/lib.linux-armv7l-3.9/klustakwik2/tests 2021-07-10T14:31:14,206 copying klustakwik2/tests/test_partitioning.py -> build/lib.linux-armv7l-3.9/klustakwik2/tests 2021-07-10T14:31:14,209 copying klustakwik2/tests/test_compute_covariance_matrix.py -> build/lib.linux-armv7l-3.9/klustakwik2/tests 2021-07-10T14:31:14,211 copying klustakwik2/tests/test_linear_algebra.py -> build/lib.linux-armv7l-3.9/klustakwik2/tests 2021-07-10T14:31:14,213 creating build/lib.linux-armv7l-3.9/klustakwik2/scripts 2021-07-10T14:31:14,214 copying klustakwik2/scripts/tools.py -> build/lib.linux-armv7l-3.9/klustakwik2/scripts 2021-07-10T14:31:14,216 copying klustakwik2/scripts/__init__.py -> build/lib.linux-armv7l-3.9/klustakwik2/scripts 2021-07-10T14:31:14,218 copying klustakwik2/scripts/kk2_legacy.py -> build/lib.linux-armv7l-3.9/klustakwik2/scripts 2021-07-10T14:31:14,220 running egg_info 2021-07-10T14:31:14,235 writing klustakwik2.egg-info/PKG-INFO 2021-07-10T14:31:14,237 writing dependency_links to klustakwik2.egg-info/dependency_links.txt 2021-07-10T14:31:14,239 writing entry points to klustakwik2.egg-info/entry_points.txt 2021-07-10T14:31:14,241 writing top-level names to klustakwik2.egg-info/top_level.txt 2021-07-10T14:31:14,251 reading manifest file 'klustakwik2.egg-info/SOURCES.txt' 2021-07-10T14:31:14,254 reading manifest template 'MANIFEST.in' 2021-07-10T14:31:14,268 warning: no files found matching '*.pyxbld' under directory 'klustakwik2/numerics/cylib' 2021-07-10T14:31:14,269 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-07-10T14:31:14,270 warning: no previously-included files matching '*.py[co]' found under directory '*' 2021-07-10T14:31:14,270 adding license file 'LICENSE' 2021-07-10T14:31:14,274 writing manifest file 'klustakwik2.egg-info/SOURCES.txt' 2021-07-10T14:31:14,278 copying klustakwik2/numerics/cylib/compute_cluster_masks_cy.c -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,304 copying klustakwik2/numerics/cylib/compute_cluster_masks_cy.pyx -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,306 copying klustakwik2/numerics/cylib/compute_cluster_penalties_cy.c -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,332 copying klustakwik2/numerics/cylib/compute_cluster_penalties_cy.pyx -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,335 copying klustakwik2/numerics/cylib/e_step_cy.cpp -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,374 copying klustakwik2/numerics/cylib/e_step_cy.pyx -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,377 copying klustakwik2/numerics/cylib/m_step_cy.c -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,417 copying klustakwik2/numerics/cylib/m_step_cy.pyx -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,420 copying klustakwik2/numerics/cylib/masks_cy.cpp -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,449 copying klustakwik2/numerics/cylib/masks_cy.pyx -> build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,455 running build_ext 2021-07-10T14:31:14,460 building 'klustakwik2.numerics.cylib.compute_cluster_masks_cy' extension 2021-07-10T14:31:14,461 creating build/temp.linux-armv7l-3.9 2021-07-10T14:31:14,462 creating build/temp.linux-armv7l-3.9/klustakwik2 2021-07-10T14:31:14,463 creating build/temp.linux-armv7l-3.9/klustakwik2/numerics 2021-07-10T14:31:14,463 creating build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib 2021-07-10T14:31:14,464 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c klustakwik2/numerics/cylib/compute_cluster_masks_cy.c -o build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_masks_cy.o 2021-07-10T14:31:14,864 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T14:31:14,864 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T14:31:14,865 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T14:31:14,865 from klustakwik2/numerics/cylib/compute_cluster_masks_cy.c:625: 2021-07-10T14:31:14,865 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T14:31:14,865 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T14:31:14,865 | ^~~~~~~ 2021-07-10T14:31:30,283 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_masks_cy.o -o build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_masks_cy.cpython-39-arm-linux-gnueabihf.so 2021-07-10T14:31:30,467 building 'klustakwik2.numerics.cylib.compute_cluster_penalties_cy' extension 2021-07-10T14:31:30,467 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c klustakwik2/numerics/cylib/compute_cluster_penalties_cy.c -o build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_penalties_cy.o 2021-07-10T14:31:30,855 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T14:31:30,856 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T14:31:30,856 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T14:31:30,856 from klustakwik2/numerics/cylib/compute_cluster_penalties_cy.c:625: 2021-07-10T14:31:30,856 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T14:31:30,856 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T14:31:30,857 | ^~~~~~~ 2021-07-10T14:31:47,095 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_penalties_cy.o -o build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_penalties_cy.cpython-39-arm-linux-gnueabihf.so 2021-07-10T14:31:47,274 building 'klustakwik2.numerics.cylib.e_step_cy' extension 2021-07-10T14:31:47,275 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c klustakwik2/numerics/cylib/e_step_cy.cpp -o build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/e_step_cy.o -fopenmp 2021-07-10T14:31:47,568 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T14:31:47,569 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T14:31:47,569 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T14:31:47,569 from klustakwik2/numerics/cylib/e_step_cy.cpp:640: 2021-07-10T14:31:47,569 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T14:31:47,569 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T14:31:47,570 | ^~~~~~~ 2021-07-10T14:31:49,637 klustakwik2/numerics/cylib/e_step_cy.cpp: In function ‘int __Pyx_InitGlobals()’: 2021-07-10T14:31:49,638 klustakwik2/numerics/cylib/e_step_cy.cpp:29437:20: warning: ‘void PyEval_InitThreads()’ is deprecated [-Wdeprecated-declarations] 2021-07-10T14:31:49,638 29437 | PyEval_InitThreads(); 2021-07-10T14:31:49,638 | ^ 2021-07-10T14:31:49,638 In file included from /usr/include/python3.9/Python.h:145, 2021-07-10T14:31:49,638 from klustakwik2/numerics/cylib/e_step_cy.cpp:20: 2021-07-10T14:31:49,638 /usr/include/python3.9/ceval.h:130:37: note: declared here 2021-07-10T14:31:49,639 130 | Py_DEPRECATED(3.9) PyAPI_FUNC(void) PyEval_InitThreads(void); 2021-07-10T14:31:49,639 | ^~~~~~~~~~~~~~~~~~ 2021-07-10T14:32:18,811 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/e_step_cy.o -o build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/e_step_cy.cpython-39-arm-linux-gnueabihf.so -fopenmp 2021-07-10T14:32:19,077 building 'klustakwik2.numerics.cylib.m_step_cy' extension 2021-07-10T14:32:19,078 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c klustakwik2/numerics/cylib/m_step_cy.c -o build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/m_step_cy.o 2021-07-10T14:32:19,481 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T14:32:19,481 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T14:32:19,481 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T14:32:19,481 from klustakwik2/numerics/cylib/m_step_cy.c:625: 2021-07-10T14:32:19,481 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T14:32:19,482 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T14:32:19,482 | ^~~~~~~ 2021-07-10T14:32:46,958 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/m_step_cy.o -o build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/m_step_cy.cpython-39-arm-linux-gnueabihf.so 2021-07-10T14:32:47,169 building 'klustakwik2.numerics.cylib.masks_cy' extension 2021-07-10T14:32:47,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c klustakwik2/numerics/cylib/masks_cy.cpp -o build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/masks_cy.o 2021-07-10T14:32:47,467 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-10T14:32:47,467 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-10T14:32:47,467 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-10T14:32:47,467 from klustakwik2/numerics/cylib/masks_cy.cpp:640: 2021-07-10T14:32:47,468 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-10T14:32:47,468 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-10T14:32:47,468 | ^~~~~~~ 2021-07-10T14:32:48,788 klustakwik2/numerics/cylib/masks_cy.cpp: In function ‘PyObject* __pyx_fuse_0__pyx_f_11klustakwik2_8numerics_5cylib_8masks_cy_do_mask_starts(__Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, short int, short int, int)’: 2021-07-10T14:32:48,788 klustakwik2/numerics/cylib/masks_cy.cpp:4649:39: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T14:32:48,788 4649 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_11; __pyx_t_9+=1) { 2021-07-10T14:32:48,788 | ~~~~~~~~~~^~~~~~~~~~~~ 2021-07-10T14:32:48,827 klustakwik2/numerics/cylib/masks_cy.cpp: In function ‘PyObject* __pyx_fuse_1__pyx_f_11klustakwik2_8numerics_5cylib_8masks_cy_do_mask_starts(__Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, int, int, int)’: 2021-07-10T14:32:48,828 klustakwik2/numerics/cylib/masks_cy.cpp:5310:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T14:32:48,828 5310 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_11; __pyx_t_9+=1) { 2021-07-10T14:32:48,828 | ~~~~~~~~~~^~~~~~~~~~~~ 2021-07-10T14:32:48,865 klustakwik2/numerics/cylib/masks_cy.cpp: In function ‘PyObject* __pyx_fuse_2__pyx_f_11klustakwik2_8numerics_5cylib_8masks_cy_do_mask_starts(__Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, long int, long int, int)’: 2021-07-10T14:32:48,865 klustakwik2/numerics/cylib/masks_cy.cpp:5971:39: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T14:32:48,865 5971 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_11; __pyx_t_9+=1) { 2021-07-10T14:32:48,865 | ~~~~~~~~~~^~~~~~~~~~~~ 2021-07-10T14:33:06,206 arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/klustakwik2/numerics/cylib/masks_cy.o -o build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/masks_cy.cpython-39-arm-linux-gnueabihf.so 2021-07-10T14:33:06,558 installing to build/bdist.linux-armv7l/wheel 2021-07-10T14:33:06,558 running install 2021-07-10T14:33:06,560 running install_lib 2021-07-10T14:33:06,565 creating build/bdist.linux-armv7l 2021-07-10T14:33:06,566 creating build/bdist.linux-armv7l/wheel 2021-07-10T14:33:06,569 creating build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:06,570 copying build/lib.linux-armv7l-3.9/klustakwik2/__init__.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:06,573 copying build/lib.linux-armv7l-3.9/klustakwik2/logger.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:06,576 copying build/lib.linux-armv7l-3.9/klustakwik2/monitoring.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:06,580 creating build/bdist.linux-armv7l/wheel/klustakwik2/numerics 2021-07-10T14:33:06,582 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/__init__.py -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics 2021-07-10T14:33:06,587 creating build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,588 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/__init__.py -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,590 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/masks_cy.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,622 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/m_step_cy.c -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,662 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/masks_cy.pyx -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,664 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_masks_cy.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,691 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/e_step_cy.pyx -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,693 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/e_step_cy.cpp -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,731 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/masks_cy.cpp -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,758 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/m_step_cy.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,831 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/m_step_cy.pyx -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,834 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/e_step.py -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,836 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_masks.py -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,838 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_penalties_cy.c -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,866 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/m_step.py -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,868 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_penalties.py -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,870 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_penalties_cy.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,895 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_masks_cy.c -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,922 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_masks_cy.pyx -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,924 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/e_step_cy.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,962 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/masks.py -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,963 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/cylib/compute_cluster_penalties_cy.pyx -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/cylib 2021-07-10T14:33:06,966 creating build/bdist.linux-armv7l/wheel/klustakwik2/numerics/numbalib 2021-07-10T14:33:06,966 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/numbalib/__init__.py -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/numbalib 2021-07-10T14:33:06,968 copying build/lib.linux-armv7l-3.9/klustakwik2/numerics/numbalib/m_step.py -> build/bdist.linux-armv7l/wheel/klustakwik2/numerics/numbalib 2021-07-10T14:33:06,970 creating build/bdist.linux-armv7l/wheel/klustakwik2/tests 2021-07-10T14:33:06,971 copying build/lib.linux-armv7l-3.9/klustakwik2/tests/__init__.py -> build/bdist.linux-armv7l/wheel/klustakwik2/tests 2021-07-10T14:33:06,973 copying build/lib.linux-armv7l-3.9/klustakwik2/tests/test_io.py -> build/bdist.linux-armv7l/wheel/klustakwik2/tests 2021-07-10T14:33:06,976 copying build/lib.linux-armv7l-3.9/klustakwik2/tests/test_compute_cluster_masks.py -> build/bdist.linux-armv7l/wheel/klustakwik2/tests 2021-07-10T14:33:06,977 copying build/lib.linux-armv7l-3.9/klustakwik2/tests/test_mask_starts.py -> build/bdist.linux-armv7l/wheel/klustakwik2/tests 2021-07-10T14:33:06,980 copying build/lib.linux-armv7l-3.9/klustakwik2/tests/test_synthetic_data.py -> build/bdist.linux-armv7l/wheel/klustakwik2/tests 2021-07-10T14:33:06,982 copying build/lib.linux-armv7l-3.9/klustakwik2/tests/test_partitioning.py -> build/bdist.linux-armv7l/wheel/klustakwik2/tests 2021-07-10T14:33:06,984 copying build/lib.linux-armv7l-3.9/klustakwik2/tests/test_compute_covariance_matrix.py -> build/bdist.linux-armv7l/wheel/klustakwik2/tests 2021-07-10T14:33:06,986 copying build/lib.linux-armv7l-3.9/klustakwik2/tests/test_linear_algebra.py -> build/bdist.linux-armv7l/wheel/klustakwik2/tests 2021-07-10T14:33:06,988 copying build/lib.linux-armv7l-3.9/klustakwik2/clustering.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:06,991 copying build/lib.linux-armv7l-3.9/klustakwik2/default_parameters.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:06,993 copying build/lib.linux-armv7l-3.9/klustakwik2/data.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:06,995 copying build/lib.linux-armv7l-3.9/klustakwik2/debugtools.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:06,997 copying build/lib.linux-armv7l-3.9/klustakwik2/linear_algebra.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:06,999 copying build/lib.linux-armv7l-3.9/klustakwik2/mask_starts.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:07,001 copying build/lib.linux-armv7l-3.9/klustakwik2/precomputations.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:07,003 copying build/lib.linux-armv7l-3.9/klustakwik2/input_output.py -> build/bdist.linux-armv7l/wheel/klustakwik2 2021-07-10T14:33:07,006 creating build/bdist.linux-armv7l/wheel/klustakwik2/scripts 2021-07-10T14:33:07,006 copying build/lib.linux-armv7l-3.9/klustakwik2/scripts/tools.py -> build/bdist.linux-armv7l/wheel/klustakwik2/scripts 2021-07-10T14:33:07,008 copying build/lib.linux-armv7l-3.9/klustakwik2/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/klustakwik2/scripts 2021-07-10T14:33:07,010 copying build/lib.linux-armv7l-3.9/klustakwik2/scripts/kk2_legacy.py -> build/bdist.linux-armv7l/wheel/klustakwik2/scripts 2021-07-10T14:33:07,012 running install_egg_info 2021-07-10T14:33:07,022 Copying klustakwik2.egg-info to build/bdist.linux-armv7l/wheel/klustakwik2-0.2.5-py3.9.egg-info 2021-07-10T14:33:07,037 running install_scripts 2021-07-10T14:33:07,078 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2021-07-10T14:33:07,083 creating build/bdist.linux-armv7l/wheel/klustakwik2-0.2.5.dist-info/WHEEL 2021-07-10T14:33:07,085 creating '/tmp/pip-wheel-2qzogs_m/klustakwik2-0.2.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-10T14:33:07,088 adding 'klustakwik2/__init__.py' 2021-07-10T14:33:07,092 adding 'klustakwik2/clustering.py' 2021-07-10T14:33:07,094 adding 'klustakwik2/data.py' 2021-07-10T14:33:07,095 adding 'klustakwik2/debugtools.py' 2021-07-10T14:33:07,097 adding 'klustakwik2/default_parameters.py' 2021-07-10T14:33:07,098 adding 'klustakwik2/input_output.py' 2021-07-10T14:33:07,100 adding 'klustakwik2/linear_algebra.py' 2021-07-10T14:33:07,101 adding 'klustakwik2/logger.py' 2021-07-10T14:33:07,102 adding 'klustakwik2/mask_starts.py' 2021-07-10T14:33:07,104 adding 'klustakwik2/monitoring.py' 2021-07-10T14:33:07,105 adding 'klustakwik2/precomputations.py' 2021-07-10T14:33:07,107 adding 'klustakwik2/numerics/__init__.py' 2021-07-10T14:33:07,109 adding 'klustakwik2/numerics/cylib/__init__.py' 2021-07-10T14:33:07,110 adding 'klustakwik2/numerics/cylib/compute_cluster_masks.py' 2021-07-10T14:33:07,193 adding 'klustakwik2/numerics/cylib/compute_cluster_masks_cy.c' 2021-07-10T14:33:07,404 adding 'klustakwik2/numerics/cylib/compute_cluster_masks_cy.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T14:33:07,413 adding 'klustakwik2/numerics/cylib/compute_cluster_masks_cy.pyx' 2021-07-10T14:33:07,414 adding 'klustakwik2/numerics/cylib/compute_cluster_penalties.py' 2021-07-10T14:33:07,495 adding 'klustakwik2/numerics/cylib/compute_cluster_penalties_cy.c' 2021-07-10T14:33:07,710 adding 'klustakwik2/numerics/cylib/compute_cluster_penalties_cy.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T14:33:07,720 adding 'klustakwik2/numerics/cylib/compute_cluster_penalties_cy.pyx' 2021-07-10T14:33:07,721 adding 'klustakwik2/numerics/cylib/e_step.py' 2021-07-10T14:33:07,832 adding 'klustakwik2/numerics/cylib/e_step_cy.cpp' 2021-07-10T14:33:08,137 adding 'klustakwik2/numerics/cylib/e_step_cy.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T14:33:08,152 adding 'klustakwik2/numerics/cylib/e_step_cy.pyx' 2021-07-10T14:33:08,154 adding 'klustakwik2/numerics/cylib/m_step.py' 2021-07-10T14:33:08,255 adding 'klustakwik2/numerics/cylib/m_step_cy.c' 2021-07-10T14:33:08,554 adding 'klustakwik2/numerics/cylib/m_step_cy.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T14:33:08,569 adding 'klustakwik2/numerics/cylib/m_step_cy.pyx' 2021-07-10T14:33:08,570 adding 'klustakwik2/numerics/cylib/masks.py' 2021-07-10T14:33:08,652 adding 'klustakwik2/numerics/cylib/masks_cy.cpp' 2021-07-10T14:33:08,905 adding 'klustakwik2/numerics/cylib/masks_cy.cpython-39-arm-linux-gnueabihf.so' 2021-07-10T14:33:08,916 adding 'klustakwik2/numerics/cylib/masks_cy.pyx' 2021-07-10T14:33:08,918 adding 'klustakwik2/numerics/numbalib/__init__.py' 2021-07-10T14:33:08,919 adding 'klustakwik2/numerics/numbalib/m_step.py' 2021-07-10T14:33:08,920 adding 'klustakwik2/scripts/__init__.py' 2021-07-10T14:33:08,922 adding 'klustakwik2/scripts/kk2_legacy.py' 2021-07-10T14:33:08,923 adding 'klustakwik2/scripts/tools.py' 2021-07-10T14:33:08,925 adding 'klustakwik2/tests/__init__.py' 2021-07-10T14:33:08,926 adding 'klustakwik2/tests/test_compute_cluster_masks.py' 2021-07-10T14:33:08,927 adding 'klustakwik2/tests/test_compute_covariance_matrix.py' 2021-07-10T14:33:08,929 adding 'klustakwik2/tests/test_io.py' 2021-07-10T14:33:08,930 adding 'klustakwik2/tests/test_linear_algebra.py' 2021-07-10T14:33:08,931 adding 'klustakwik2/tests/test_mask_starts.py' 2021-07-10T14:33:08,933 adding 'klustakwik2/tests/test_partitioning.py' 2021-07-10T14:33:08,934 adding 'klustakwik2/tests/test_synthetic_data.py' 2021-07-10T14:33:08,937 adding 'klustakwik2-0.2.5.dist-info/LICENSE' 2021-07-10T14:33:08,938 adding 'klustakwik2-0.2.5.dist-info/METADATA' 2021-07-10T14:33:08,939 adding 'klustakwik2-0.2.5.dist-info/WHEEL' 2021-07-10T14:33:08,940 adding 'klustakwik2-0.2.5.dist-info/entry_points.txt' 2021-07-10T14:33:08,941 adding 'klustakwik2-0.2.5.dist-info/top_level.txt' 2021-07-10T14:33:08,942 adding 'klustakwik2-0.2.5.dist-info/RECORD' 2021-07-10T14:33:08,993 removing build/bdist.linux-armv7l/wheel 2021-07-10T14:33:09,167 Building wheel for klustakwik2 (setup.py): finished with status 'done' 2021-07-10T14:33:09,213 Created wheel for klustakwik2: filename=klustakwik2-0.2.5-cp39-cp39-linux_armv7l.whl size=3064068 sha256=5adff000f46eabcfe6d94560759c5f4707feb16d7b89a17b243e4119811bfe99 2021-07-10T14:33:09,214 Stored in directory: /tmp/pip-ephem-wheel-cache-1byg35oz/wheels/87/cb/a3/ce89b0881c22cfb576fbdb12054558a24d51cb85ae5c94bffd 2021-07-10T14:33:09,226 Successfully built klustakwik2 2021-07-10T14:33:09,343 Removed build tracker: '/tmp/pip-req-tracker-j31im1m6'