2021-07-10T15:01:21,263 Created temporary directory: /tmp/pip-ephem-wheel-cache-1pctvykq 2021-07-10T15:01:21,265 Created temporary directory: /tmp/pip-req-tracker-b6h_ylsz 2021-07-10T15:01:21,266 Initialized build tracking at /tmp/pip-req-tracker-b6h_ylsz 2021-07-10T15:01:21,266 Created build tracker: /tmp/pip-req-tracker-b6h_ylsz 2021-07-10T15:01:21,266 Entered build tracker: /tmp/pip-req-tracker-b6h_ylsz 2021-07-10T15:01:21,267 Created temporary directory: /tmp/pip-wheel-oxr8rk5r 2021-07-10T15:01:21,295 1 location(s) to search for versions of moira: 2021-07-10T15:01:21,295 * https://pypi.org/simple/moira/ 2021-07-10T15:01:21,295 Fetching project page and analyzing links: https://pypi.org/simple/moira/ 2021-07-10T15:01:21,295 Getting page https://pypi.org/simple/moira/ 2021-07-10T15:01:21,297 Found index url https://pypi.org/simple 2021-07-10T15:01:21,388 Found link https://files.pythonhosted.org/packages/50/c8/214268f5af1be0fadd0b993d96f3b3f5def49c1c9a693a695ab688bcb45c/moira-v1.0.0.tar.gz#sha256=cd1e465608b5d346f1a8b204fd9bb8c1634bf3db9ad3adc89ddafe3c569feb37 (from https://pypi.org/simple/moira/), version: v1.0.0 2021-07-10T15:01:21,389 Found link https://files.pythonhosted.org/packages/94/d3/a532237a3588536bb514272150200dd1e107b138813cfa2cd1bd8ec66876/moira-v1.0.1.tar.gz#sha256=d0b617e57cdea9013dc09b08ab62977cac3ae4268f40dfca663460903f179bd8 (from https://pypi.org/simple/moira/), version: v1.0.1 2021-07-10T15:01:21,389 Found link https://files.pythonhosted.org/packages/92/f5/5af7667b9d4930d27b24597643d88b8c76ce715351ee59be3d1d128cf0ed/moira-v1.0.2b.tar.gz#sha256=c25307bfd838eea95d74f16d4a270be8c63b477b72957123a460b7b79088f34a (from https://pypi.org/simple/moira/), version: v1.0.2b 2021-07-10T15:01:21,389 Found link https://files.pythonhosted.org/packages/fd/42/e43dd8004e8330c625482ac2563222b7e780dd9c951543b7e0d9e20d5482/moira-v1.0.2.tar.gz#sha256=210485455aba232fc7625974ce026ae00e864c4a746739adf24701219f36730d (from https://pypi.org/simple/moira/), version: v1.0.2 2021-07-10T15:01:21,390 Found link https://files.pythonhosted.org/packages/45/82/2488293a6de58d96101ed49993a83cef82ed27b8b94683f0b48b3053d03c/moira-v1.1.0.tar.gz#sha256=284d89790de1de877ef78ab6a3604d57cf3a6c16a8132354986dfa81c38184ca (from https://pypi.org/simple/moira/), version: v1.1.0 2021-07-10T15:01:21,390 Found link https://files.pythonhosted.org/packages/7e/70/3f9ca73321fd8e7403a4673d2f66ce4a31cdc5007b6cf261a2767218dd8c/moira-v1.2.0.tar.gz#sha256=a47396bc7ea1fcda373613a773b8aeacb8f0db55d87a4302ead78f72755fb73d (from https://pypi.org/simple/moira/), version: v1.2.0 2021-07-10T15:01:21,390 Found link https://files.pythonhosted.org/packages/51/3b/500c09bd64d7dcf6e50516e5f91e9b121a4bd0dfbce255c066f77bf7d5de/moira-v1.2.1.tar.gz#sha256=404d6557cfbcaca85b5e6c8d0c2df1094d4bf7f69e9976c5bfb7625d1ad518d1 (from https://pypi.org/simple/moira/), version: v1.2.1 2021-07-10T15:01:21,390 Found link https://files.pythonhosted.org/packages/60/c5/d34cb2fdc1304e5bcd74488164543d51788f9d43a4fb6db89c4dd7397ab5/moira-v1.3.0.tar.gz#sha256=77f68974a17d928449055696632ced9ac56530bcb5abaddd4df88e445d6f497f (from https://pypi.org/simple/moira/), version: v1.3.0 2021-07-10T15:01:21,391 Found link https://files.pythonhosted.org/packages/2d/b0/6e752f6fd0423ed624387c94d5fcabaa6eef234b3cbd12d0db607af477bf/moira-v1.3.2.tar.gz#sha256=6b00b7d0e0e37724fc23ed03bf1ec3d5d2fcf7ec51a769967f729d68b014e00c (from https://pypi.org/simple/moira/), version: v1.3.2 2021-07-10T15:01:21,391 Skipping link: not a file: https://pypi.org/simple/moira/ 2021-07-10T15:01:21,410 Given no hashes to check 1 links for project 'moira': discarding no candidates 2021-07-10T15:01:21,428 Collecting moira==v1.2.1 2021-07-10T15:01:21,430 Created temporary directory: /tmp/pip-unpack-66pkp0k2 2021-07-10T15:01:21,905 Downloading moira-v1.2.1.tar.gz (965 kB) 2021-07-10T15:01:22,376 Added moira==v1.2.1 from https://files.pythonhosted.org/packages/51/3b/500c09bd64d7dcf6e50516e5f91e9b121a4bd0dfbce255c066f77bf7d5de/moira-v1.2.1.tar.gz#sha256=404d6557cfbcaca85b5e6c8d0c2df1094d4bf7f69e9976c5bfb7625d1ad518d1 to build tracker '/tmp/pip-req-tracker-b6h_ylsz' 2021-07-10T15:01:22,377 Running setup.py (path:/tmp/pip-wheel-oxr8rk5r/moira_370b5df8ea254cd6aaec826311f0e94d/setup.py) egg_info for package moira 2021-07-10T15:01:22,377 Created temporary directory: /tmp/pip-pip-egg-info-omodfscb 2021-07-10T15:01:22,378 Running command python setup.py egg_info 2021-07-10T15:01:23,225 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.2.1' to '1.2.1' 2021-07-10T15:01:23,226 warnings.warn(tmpl.format(**locals())) 2021-07-10T15:01:23,228 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-10T15:01:23,228 warnings.warn( 2021-07-10T15:01:23,242 running egg_info 2021-07-10T15:01:23,244 creating /tmp/pip-pip-egg-info-omodfscb/moira.egg-info 2021-07-10T15:01:23,245 writing /tmp/pip-pip-egg-info-omodfscb/moira.egg-info/PKG-INFO 2021-07-10T15:01:23,247 writing dependency_links to /tmp/pip-pip-egg-info-omodfscb/moira.egg-info/dependency_links.txt 2021-07-10T15:01:23,249 writing top-level names to /tmp/pip-pip-egg-info-omodfscb/moira.egg-info/top_level.txt 2021-07-10T15:01:23,250 writing manifest file '/tmp/pip-pip-egg-info-omodfscb/moira.egg-info/SOURCES.txt' 2021-07-10T15:01:23,571 reading manifest file '/tmp/pip-pip-egg-info-omodfscb/moira.egg-info/SOURCES.txt' 2021-07-10T15:01:23,573 reading manifest template 'MANIFEST.in' 2021-07-10T15:01:23,578 adding license file 'LICENSE' 2021-07-10T15:01:23,582 writing manifest file '/tmp/pip-pip-egg-info-omodfscb/moira.egg-info/SOURCES.txt' 2021-07-10T15:01:23,659 Source in /tmp/pip-wheel-oxr8rk5r/moira_370b5df8ea254cd6aaec826311f0e94d has version 1.2.1, which satisfies requirement moira==v1.2.1 from https://files.pythonhosted.org/packages/51/3b/500c09bd64d7dcf6e50516e5f91e9b121a4bd0dfbce255c066f77bf7d5de/moira-v1.2.1.tar.gz#sha256=404d6557cfbcaca85b5e6c8d0c2df1094d4bf7f69e9976c5bfb7625d1ad518d1 2021-07-10T15:01:23,660 Removed moira==v1.2.1 from https://files.pythonhosted.org/packages/51/3b/500c09bd64d7dcf6e50516e5f91e9b121a4bd0dfbce255c066f77bf7d5de/moira-v1.2.1.tar.gz#sha256=404d6557cfbcaca85b5e6c8d0c2df1094d4bf7f69e9976c5bfb7625d1ad518d1 from build tracker '/tmp/pip-req-tracker-b6h_ylsz' 2021-07-10T15:01:23,664 Created temporary directory: /tmp/pip-unpack-cakg6wqb 2021-07-10T15:01:23,665 Building wheels for collected packages: moira 2021-07-10T15:01:23,669 Created temporary directory: /tmp/pip-wheel-d6l5ea9s 2021-07-10T15:01:23,670 Building wheel for moira (setup.py): started 2021-07-10T15:01:23,670 Destination directory: /tmp/pip-wheel-d6l5ea9s 2021-07-10T15:01:23,670 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-oxr8rk5r/moira_370b5df8ea254cd6aaec826311f0e94d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-oxr8rk5r/moira_370b5df8ea254cd6aaec826311f0e94d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-d6l5ea9s 2021-07-10T15:01:24,489 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.2.1' to '1.2.1' 2021-07-10T15:01:24,490 warnings.warn(tmpl.format(**locals())) 2021-07-10T15:01:24,492 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-10T15:01:24,492 warnings.warn( 2021-07-10T15:01:24,529 running bdist_wheel 2021-07-10T15:01:24,683 running build 2021-07-10T15:01:24,684 running build_py 2021-07-10T15:01:24,824 creating build 2021-07-10T15:01:24,825 creating build/lib.linux-armv7l-3.9 2021-07-10T15:01:24,825 creating build/lib.linux-armv7l-3.9/moira 2021-07-10T15:01:24,827 copying moira/__init__.py -> build/lib.linux-armv7l-3.9/moira 2021-07-10T15:01:24,829 copying moira/moira.py -> build/lib.linux-armv7l-3.9/moira 2021-07-10T15:01:24,833 running build_ext 2021-07-10T15:01:24,838 building 'bernoulli' extension 2021-07-10T15:01:24,839 creating build/temp.linux-armv7l-3.9 2021-07-10T15:01:24,839 creating build/temp.linux-armv7l-3.9/moira 2021-07-10T15:01:24,840 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c moira/bernoullimodule.c -o build/temp.linux-armv7l-3.9/moira/bernoullimodule.o 2021-07-10T15:01:25,243 moira/bernoullimodule.c: In function ‘calculate_errors_PB’: 2021-07-10T15:01:25,244 moira/bernoullimodule.c:86:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-10T15:01:25,244 86 | if (contig_quals_size != strlen(contig)) 2021-07-10T15:01:25,244 | ^~ 2021-07-10T15:01:25,249 moira/bernoullimodule.c:97:27: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration] 2021-07-10T15:01:25,249 97 | contig_quals [i] = (int)PyInt_AsLong(intObj); //Since python integers are actually implemented as C long integers. 2021-07-10T15:01:25,250 | ^~~~~~~~~~~~ 2021-07-10T15:01:25,250 | PyLong_AsLong 2021-07-10T15:01:25,256 moira/bernoullimodule.c: In function ‘initbernoulli’: 2021-07-10T15:01:25,257 moira/bernoullimodule.c:124:9: warning: implicit declaration of function ‘Py_InitModule’ [-Wimplicit-function-declaration] 2021-07-10T15:01:25,257 124 | (void) Py_InitModule("bernoulli", module_methods); 2021-07-10T15:01:25,257 | ^~~~~~~~~~~~~ 2021-07-10T15:01:25,258 moira/bernoullimodule.c: In function ‘test’: 2021-07-10T15:01:25,259 moira/bernoullimodule.c:212:6: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-10T15:01:25,260 212 | int j; 2021-07-10T15:01:25,261 | ^ 2021-07-10T15:01:25,263 moira/bernoullimodule.c: In function ‘initbernoulli’: 2021-07-10T15:01:25,263 moira/bernoullimodule.c:125:1: warning: control reaches end of non-void function [-Wreturn-type] 2021-07-10T15:01:25,263 125 | } 2021-07-10T15:01:25,263 | ^ 2021-07-10T15:01:25,265 At top level: 2021-07-10T15:01:25,266 moira/bernoullimodule.c:55:13: warning: ‘module_docstring’ defined but not used [-Wunused-variable] 2021-07-10T15:01:25,266 55 | static char module_docstring[] = "This module provides an interface for calculating the expected errors of a given sequence using a sum of Bernoulli random variables."; 2021-07-10T15:01:25,266 | ^~~~~~~~~~~~~~~~ 2021-07-10T15:01:25,472 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/moira/bernoullimodule.o -o build/lib.linux-armv7l-3.9/bernoulli.cpython-39-arm-linux-gnueabihf.so 2021-07-10T15:01:25,581 building 'nw_align' extension 2021-07-10T15:01:25,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c moira/nw_align.c -o build/temp.linux-armv7l-3.9/moira/nw_align.o 2021-07-10T15:01:25,979 moira/nw_align.c: In function ‘__pyx_f_5moira_8nw_align_nw_overlap’: 2021-07-10T15:01:25,981 moira/nw_align.c:2898:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-10T15:01:25,981 2898 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-10T15:01:25,981 | ^ 2021-07-10T15:01:25,983 moira/nw_align.c:2969:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-10T15:01:25,983 2969 | for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_1; __pyx_v_j++) { 2021-07-10T15:01:25,983 | ^ 2021-07-10T15:01:25,987 moira/nw_align.c:3106:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-10T15:01:25,988 3106 | for (__pyx_t_14 = (__pyx_t_13 - 1); __pyx_t_14 > __pyx_t_1; __pyx_t_14-=1) { 2021-07-10T15:01:25,988 | ^ 2021-07-10T15:01:25,990 moira/nw_align.c:3169:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-10T15:01:25,990 3169 | for (__pyx_t_14 = (__pyx_t_13 - 1); __pyx_t_14 > __pyx_t_1; __pyx_t_14-=1) { 2021-07-10T15:01:25,991 | ^ 2021-07-10T15:01:25,992 moira/nw_align.c:2836:7: warning: variable ‘__pyx_t_11’ set but not used [-Wunused-but-set-variable] 2021-07-10T15:01:25,992 2836 | int __pyx_t_11; 2021-07-10T15:01:25,993 | ^~~~~~~~~~ 2021-07-10T15:01:26,142 moira/nw_align.c: In function ‘PyInit_nw_align’: 2021-07-10T15:01:26,149 moira/nw_align.c:14859:25: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T15:01:26,149 14859 | __pyx_type___pyx_array.tp_print = 0; 2021-07-10T15:01:26,149 | ^ 2021-07-10T15:01:26,156 moira/nw_align.c:14862:31: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T15:01:26,156 14862 | __pyx_type___pyx_MemviewEnum.tp_print = 0; 2021-07-10T15:01:26,157 | ^ 2021-07-10T15:01:26,164 moira/nw_align.c:14873:30: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T15:01:26,164 14873 | __pyx_type___pyx_memoryview.tp_print = 0; 2021-07-10T15:01:26,164 | ^ 2021-07-10T15:01:26,172 moira/nw_align.c:14882:35: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-10T15:01:26,172 14882 | __pyx_type___pyx_memoryviewslice.tp_print = 0; 2021-07-10T15:01:26,172 | ^ 2021-07-10T15:01:26,299 moira/nw_align.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-10T15:01:26,306 moira/nw_align.c:16016:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,307 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,307 | ^ 2021-07-10T15:01:26,307 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,307 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,307 from moira/nw_align.c:16: 2021-07-10T15:01:26,307 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T15:01:26,307 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T15:01:26,308 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,316 moira/nw_align.c:16016:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,317 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,317 | ^ 2021-07-10T15:01:26,317 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,317 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,317 from moira/nw_align.c:16: 2021-07-10T15:01:26,317 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T15:01:26,317 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T15:01:26,318 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,326 moira/nw_align.c:16016:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,326 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,326 | ^ 2021-07-10T15:01:26,327 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,327 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,327 from moira/nw_align.c:16: 2021-07-10T15:01:26,327 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T15:01:26,327 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T15:01:26,327 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,336 moira/nw_align.c:16016:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,336 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,336 | ^ 2021-07-10T15:01:26,336 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,336 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,336 from moira/nw_align.c:16: 2021-07-10T15:01:26,336 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T15:01:26,337 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T15:01:26,337 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,345 moira/nw_align.c:16016:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,345 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,345 | ^ 2021-07-10T15:01:26,346 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,346 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,346 from moira/nw_align.c:16: 2021-07-10T15:01:26,346 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T15:01:26,346 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T15:01:26,346 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,355 moira/nw_align.c:16016:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,355 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,355 | ^ 2021-07-10T15:01:26,355 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,355 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,355 from moira/nw_align.c:16: 2021-07-10T15:01:26,355 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T15:01:26,356 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T15:01:26,356 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,366 moira/nw_align.c:16032:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,366 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,366 | ^ 2021-07-10T15:01:26,367 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,367 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,367 from moira/nw_align.c:16: 2021-07-10T15:01:26,367 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T15:01:26,367 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T15:01:26,367 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,375 moira/nw_align.c:16032:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,376 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,376 | ^ 2021-07-10T15:01:26,376 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,376 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,376 from moira/nw_align.c:16: 2021-07-10T15:01:26,376 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T15:01:26,376 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T15:01:26,376 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,385 moira/nw_align.c:16032:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,385 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,385 | ^ 2021-07-10T15:01:26,385 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,385 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,385 from moira/nw_align.c:16: 2021-07-10T15:01:26,386 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T15:01:26,386 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T15:01:26,386 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,394 moira/nw_align.c:16032:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,394 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,394 | ^ 2021-07-10T15:01:26,395 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,395 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,395 from moira/nw_align.c:16: 2021-07-10T15:01:26,395 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T15:01:26,395 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T15:01:26,395 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,403 moira/nw_align.c:16032:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,404 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,404 | ^ 2021-07-10T15:01:26,404 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,404 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,404 from moira/nw_align.c:16: 2021-07-10T15:01:26,404 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-10T15:01:26,404 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-10T15:01:26,405 | ^~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,413 moira/nw_align.c:16032:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,413 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-10T15:01:26,413 | ^ 2021-07-10T15:01:26,414 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,414 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,414 from moira/nw_align.c:16: 2021-07-10T15:01:26,414 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-10T15:01:26,414 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-10T15:01:26,414 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,483 moira/nw_align.c: In function ‘__Pyx_decode_c_string’: 2021-07-10T15:01:26,491 moira/nw_align.c:16449:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-10T15:01:26,491 16449 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-10T15:01:26,491 | ^~~~~~ 2021-07-10T15:01:26,491 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-10T15:01:26,491 from /usr/include/python3.9/Python.h:97, 2021-07-10T15:01:26,491 from moira/nw_align.c:16: 2021-07-10T15:01:26,492 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-10T15:01:26,492 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-10T15:01:26,492 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-10T15:01:26,498 moira/nw_align.c: In function ‘__Pyx_ExceptionSave’: 2021-07-10T15:01:26,512 moira/nw_align.c:16488:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T15:01:26,513 16488 | *type = tstate->exc_type; 2021-07-10T15:01:26,513 | ^~~~~~~~ 2021-07-10T15:01:26,513 | curexc_type 2021-07-10T15:01:26,527 moira/nw_align.c:16489:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T15:01:26,527 16489 | *value = tstate->exc_value; 2021-07-10T15:01:26,527 | ^~~~~~~~~ 2021-07-10T15:01:26,527 | curexc_value 2021-07-10T15:01:26,541 moira/nw_align.c:16490:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T15:01:26,542 16490 | *tb = tstate->exc_traceback; 2021-07-10T15:01:26,542 | ^~~~~~~~~~~~~ 2021-07-10T15:01:26,542 | curexc_traceback 2021-07-10T15:01:26,542 moira/nw_align.c: In function ‘__Pyx_ExceptionReset’: 2021-07-10T15:01:26,556 moira/nw_align.c:16502:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T15:01:26,556 16502 | tmp_type = tstate->exc_type; 2021-07-10T15:01:26,556 | ^~~~~~~~ 2021-07-10T15:01:26,556 | curexc_type 2021-07-10T15:01:26,570 moira/nw_align.c:16503:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T15:01:26,570 16503 | tmp_value = tstate->exc_value; 2021-07-10T15:01:26,570 | ^~~~~~~~~ 2021-07-10T15:01:26,571 | curexc_value 2021-07-10T15:01:26,584 moira/nw_align.c:16504:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T15:01:26,585 16504 | tmp_tb = tstate->exc_traceback; 2021-07-10T15:01:26,585 | ^~~~~~~~~~~~~ 2021-07-10T15:01:26,585 | curexc_traceback 2021-07-10T15:01:26,599 moira/nw_align.c:16505:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T15:01:26,599 16505 | tstate->exc_type = type; 2021-07-10T15:01:26,599 | ^~~~~~~~ 2021-07-10T15:01:26,599 | curexc_type 2021-07-10T15:01:26,613 moira/nw_align.c:16506:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T15:01:26,613 16506 | tstate->exc_value = value; 2021-07-10T15:01:26,613 | ^~~~~~~~~ 2021-07-10T15:01:26,613 | curexc_value 2021-07-10T15:01:26,627 moira/nw_align.c:16507:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T15:01:26,628 16507 | tstate->exc_traceback = tb; 2021-07-10T15:01:26,628 | ^~~~~~~~~~~~~ 2021-07-10T15:01:26,628 | curexc_traceback 2021-07-10T15:01:26,631 moira/nw_align.c: In function ‘__Pyx_GetException’: 2021-07-10T15:01:26,646 moira/nw_align.c:16550:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T15:01:26,646 16550 | tmp_type = tstate->exc_type; 2021-07-10T15:01:26,646 | ^~~~~~~~ 2021-07-10T15:01:26,646 | curexc_type 2021-07-10T15:01:26,660 moira/nw_align.c:16551:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T15:01:26,661 16551 | tmp_value = tstate->exc_value; 2021-07-10T15:01:26,661 | ^~~~~~~~~ 2021-07-10T15:01:26,661 | curexc_value 2021-07-10T15:01:26,675 moira/nw_align.c:16552:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T15:01:26,675 16552 | tmp_tb = tstate->exc_traceback; 2021-07-10T15:01:26,675 | ^~~~~~~~~~~~~ 2021-07-10T15:01:26,675 | curexc_traceback 2021-07-10T15:01:26,689 moira/nw_align.c:16553:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T15:01:26,689 16553 | tstate->exc_type = local_type; 2021-07-10T15:01:26,689 | ^~~~~~~~ 2021-07-10T15:01:26,689 | curexc_type 2021-07-10T15:01:26,703 moira/nw_align.c:16554:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T15:01:26,703 16554 | tstate->exc_value = local_value; 2021-07-10T15:01:26,704 | ^~~~~~~~~ 2021-07-10T15:01:26,704 | curexc_value 2021-07-10T15:01:26,718 moira/nw_align.c:16555:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T15:01:26,718 16555 | tstate->exc_traceback = local_tb; 2021-07-10T15:01:26,718 | ^~~~~~~~~~~~~ 2021-07-10T15:01:26,718 | curexc_traceback 2021-07-10T15:01:26,718 moira/nw_align.c: In function ‘__Pyx_ExceptionSwap’: 2021-07-10T15:01:26,732 moira/nw_align.c:16577:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T15:01:26,733 16577 | tmp_type = tstate->exc_type; 2021-07-10T15:01:26,733 | ^~~~~~~~ 2021-07-10T15:01:26,733 | curexc_type 2021-07-10T15:01:26,747 moira/nw_align.c:16578:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T15:01:26,747 16578 | tmp_value = tstate->exc_value; 2021-07-10T15:01:26,747 | ^~~~~~~~~ 2021-07-10T15:01:26,747 | curexc_value 2021-07-10T15:01:26,761 moira/nw_align.c:16579:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T15:01:26,761 16579 | tmp_tb = tstate->exc_traceback; 2021-07-10T15:01:26,761 | ^~~~~~~~~~~~~ 2021-07-10T15:01:26,761 | curexc_traceback 2021-07-10T15:01:26,776 moira/nw_align.c:16580:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-10T15:01:26,776 16580 | tstate->exc_type = *type; 2021-07-10T15:01:26,776 | ^~~~~~~~ 2021-07-10T15:01:26,776 | curexc_type 2021-07-10T15:01:26,790 moira/nw_align.c:16581:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-10T15:01:26,790 16581 | tstate->exc_value = *value; 2021-07-10T15:01:26,791 | ^~~~~~~~~ 2021-07-10T15:01:26,791 | curexc_value 2021-07-10T15:01:26,805 moira/nw_align.c:16582:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-10T15:01:26,805 16582 | tstate->exc_traceback = *tb; 2021-07-10T15:01:26,805 | ^~~~~~~~~~~~~ 2021-07-10T15:01:26,805 | curexc_traceback 2021-07-10T15:01:27,076 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-10T15:01:27,160 Building wheel for moira (setup.py): finished with status 'error' 2021-07-10T15:01:27,160 ERROR: Failed building wheel for moira 2021-07-10T15:01:27,161 Running setup.py clean for moira 2021-07-10T15:01:27,161 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-oxr8rk5r/moira_370b5df8ea254cd6aaec826311f0e94d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-oxr8rk5r/moira_370b5df8ea254cd6aaec826311f0e94d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-10T15:01:27,976 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.2.1' to '1.2.1' 2021-07-10T15:01:27,977 warnings.warn(tmpl.format(**locals())) 2021-07-10T15:01:27,979 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-10T15:01:27,979 warnings.warn( 2021-07-10T15:01:27,985 running clean 2021-07-10T15:01:27,988 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-10T15:01:27,990 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-10T15:01:27,993 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-10T15:01:27,994 'build/scripts-3.9' does not exist -- can't clean it 2021-07-10T15:01:27,994 removing 'build' 2021-07-10T15:01:28,051 Failed to build moira 2021-07-10T15:01:28,052 ERROR: Failed to build one or more wheels 2021-07-10T15:01:28,053 Exception information: 2021-07-10T15:01:28,053 Traceback (most recent call last): 2021-07-10T15:01:28,053 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-10T15:01:28,053 status = self.run(options, args) 2021-07-10T15:01:28,053 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-10T15:01:28,053 return func(self, options, args) 2021-07-10T15:01:28,053 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-10T15:01:28,053 raise CommandError( 2021-07-10T15:01:28,053 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-10T15:01:28,055 Removed build tracker: '/tmp/pip-req-tracker-b6h_ylsz'