2021-07-11T01:54:28,367 Created temporary directory: /tmp/pip-ephem-wheel-cache-48_yzask
2021-07-11T01:54:28,369 Created temporary directory: /tmp/pip-req-tracker-er5abcpj
2021-07-11T01:54:28,370 Initialized build tracking at /tmp/pip-req-tracker-er5abcpj
2021-07-11T01:54:28,370 Created build tracker: /tmp/pip-req-tracker-er5abcpj
2021-07-11T01:54:28,370 Entered build tracker: /tmp/pip-req-tracker-er5abcpj
2021-07-11T01:54:28,371 Created temporary directory: /tmp/pip-wheel-c1dulftv
2021-07-11T01:54:28,406 1 location(s) to search for versions of ilus:
2021-07-11T01:54:28,406 * https://pypi.org/simple/ilus/
2021-07-11T01:54:28,406 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2021-07-11T01:54:28,407 Getting page https://pypi.org/simple/ilus/
2021-07-11T01:54:28,408 Found index url https://pypi.org/simple
2021-07-11T01:54:28,499   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz#sha256=767a37912251f975aa58152f257c6e58fcc3e7a3bda060c85cda4f26b10a827f (from https://pypi.org/simple/ilus/), version: 0.1.0
2021-07-11T01:54:28,500   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz#sha256=bdb974377abaecf6074d1992de8f925bc67d95f4fdd0bf7aa47b23187f661ced (from https://pypi.org/simple/ilus/), version: 1.0.0
2021-07-11T01:54:28,500   Found link https://files.pythonhosted.org/packages/c8/bf/3716a026b6ebcb7028105356ac7922739ab7872a63eb43f7dfd886c5c5db/ilus-1.0.1.tar.gz#sha256=3fb04424d0f6cd75ad0dc7ffbbd8fead26054fc6c8bd04b8e90fc9799f23ce21 (from https://pypi.org/simple/ilus/), version: 1.0.1
2021-07-11T01:54:28,500   Found link https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz#sha256=e80d3144c58fe3b341114dafe035c4d4826258a7d0c8a109cbd5dd780201f228 (from https://pypi.org/simple/ilus/), version: 1.0.2
2021-07-11T01:54:28,501 Skipping link: not a file: https://pypi.org/simple/ilus/
2021-07-11T01:54:28,514 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2021-07-11T01:54:28,529 Collecting ilus==1.0.2
2021-07-11T01:54:28,531   Created temporary directory: /tmp/pip-unpack-wmlp2b3h
2021-07-11T01:54:28,573   Downloading ilus-1.0.2.tar.gz (14 kB)
2021-07-11T01:54:28,645   Added ilus==1.0.2 from https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz#sha256=e80d3144c58fe3b341114dafe035c4d4826258a7d0c8a109cbd5dd780201f228 to build tracker '/tmp/pip-req-tracker-er5abcpj'
2021-07-11T01:54:28,646     Running setup.py (path:/tmp/pip-wheel-c1dulftv/ilus_bb0f24c1f55c4984b4a1cec6dbed02c0/setup.py) egg_info for package ilus
2021-07-11T01:54:28,647     Created temporary directory: /tmp/pip-pip-egg-info-jdb2tr6y
2021-07-11T01:54:28,647     Running command python setup.py egg_info
2021-07-11T01:54:29,624     running egg_info
2021-07-11T01:54:29,626     creating /tmp/pip-pip-egg-info-jdb2tr6y/ilus.egg-info
2021-07-11T01:54:29,627     writing /tmp/pip-pip-egg-info-jdb2tr6y/ilus.egg-info/PKG-INFO
2021-07-11T01:54:29,629     writing dependency_links to /tmp/pip-pip-egg-info-jdb2tr6y/ilus.egg-info/dependency_links.txt
2021-07-11T01:54:29,631     writing entry points to /tmp/pip-pip-egg-info-jdb2tr6y/ilus.egg-info/entry_points.txt
2021-07-11T01:54:29,632     writing requirements to /tmp/pip-pip-egg-info-jdb2tr6y/ilus.egg-info/requires.txt
2021-07-11T01:54:29,633     writing top-level names to /tmp/pip-pip-egg-info-jdb2tr6y/ilus.egg-info/top_level.txt
2021-07-11T01:54:29,635     writing manifest file '/tmp/pip-pip-egg-info-jdb2tr6y/ilus.egg-info/SOURCES.txt'
2021-07-11T01:54:29,775     reading manifest file '/tmp/pip-pip-egg-info-jdb2tr6y/ilus.egg-info/SOURCES.txt'
2021-07-11T01:54:29,776     adding license file 'LICENSE.txt'
2021-07-11T01:54:29,779     writing manifest file '/tmp/pip-pip-egg-info-jdb2tr6y/ilus.egg-info/SOURCES.txt'
2021-07-11T01:54:29,842   Source in /tmp/pip-wheel-c1dulftv/ilus_bb0f24c1f55c4984b4a1cec6dbed02c0 has version 1.0.2, which satisfies requirement ilus==1.0.2 from https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz#sha256=e80d3144c58fe3b341114dafe035c4d4826258a7d0c8a109cbd5dd780201f228
2021-07-11T01:54:29,843   Removed ilus==1.0.2 from https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz#sha256=e80d3144c58fe3b341114dafe035c4d4826258a7d0c8a109cbd5dd780201f228 from build tracker '/tmp/pip-req-tracker-er5abcpj'
2021-07-11T01:54:29,847 Created temporary directory: /tmp/pip-unpack-ycs7it7k
2021-07-11T01:54:29,848 Building wheels for collected packages: ilus
2021-07-11T01:54:29,852   Created temporary directory: /tmp/pip-wheel-vk21cbpr
2021-07-11T01:54:29,853   Building wheel for ilus (setup.py): started
2021-07-11T01:54:29,853   Destination directory: /tmp/pip-wheel-vk21cbpr
2021-07-11T01:54:29,853   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-c1dulftv/ilus_bb0f24c1f55c4984b4a1cec6dbed02c0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-c1dulftv/ilus_bb0f24c1f55c4984b4a1cec6dbed02c0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vk21cbpr
2021-07-11T01:54:30,834   running bdist_wheel
2021-07-11T01:54:30,839   running build
2021-07-11T01:54:30,839   running build_py
2021-07-11T01:54:30,967   creating build
2021-07-11T01:54:30,968   creating build/lib
2021-07-11T01:54:30,968   creating build/lib/ilus
2021-07-11T01:54:30,969   copying ilus/main.py -> build/lib/ilus
2021-07-11T01:54:30,972   copying ilus/utils.py -> build/lib/ilus
2021-07-11T01:54:30,973   copying ilus/__init__.py -> build/lib/ilus
2021-07-11T01:54:30,975   creating build/lib/ilus/launch
2021-07-11T01:54:30,976   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2021-07-11T01:54:30,979   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2021-07-11T01:54:30,981   creating build/lib/ilus/pipeline
2021-07-11T01:54:30,982   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2021-07-11T01:54:30,983   copying ilus/pipeline/wgs.py -> build/lib/ilus/pipeline
2021-07-11T01:54:30,986   creating build/lib/ilus/modules
2021-07-11T01:54:30,987   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2021-07-11T01:54:30,989   creating build/lib/ilus/modules/vcf
2021-07-11T01:54:30,989   copying ilus/modules/vcf/bcftools.py -> build/lib/ilus/modules/vcf
2021-07-11T01:54:30,991   copying ilus/modules/vcf/__init__.py -> build/lib/ilus/modules/vcf
2021-07-11T01:54:30,993   creating build/lib/ilus/modules/ngsaligner
2021-07-11T01:54:30,994   copying ilus/modules/ngsaligner/bwa.py -> build/lib/ilus/modules/ngsaligner
2021-07-11T01:54:30,996   copying ilus/modules/ngsaligner/__init__.py -> build/lib/ilus/modules/ngsaligner
2021-07-11T01:54:30,998   creating build/lib/ilus/modules/summary
2021-07-11T01:54:30,999   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2021-07-11T01:54:31,001   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2021-07-11T01:54:31,003   creating build/lib/ilus/modules/variants
2021-07-11T01:54:31,004   copying ilus/modules/variants/gatk.py -> build/lib/ilus/modules/variants
2021-07-11T01:54:31,007   copying ilus/modules/variants/__init__.py -> build/lib/ilus/modules/variants
2021-07-11T01:54:31,008   running egg_info
2021-07-11T01:54:31,023   writing ilus.egg-info/PKG-INFO
2021-07-11T01:54:31,025   writing dependency_links to ilus.egg-info/dependency_links.txt
2021-07-11T01:54:31,026   writing entry points to ilus.egg-info/entry_points.txt
2021-07-11T01:54:31,027   writing requirements to ilus.egg-info/requires.txt
2021-07-11T01:54:31,029   writing top-level names to ilus.egg-info/top_level.txt
2021-07-11T01:54:31,037   reading manifest file 'ilus.egg-info/SOURCES.txt'
2021-07-11T01:54:31,039   adding license file 'LICENSE.txt'
2021-07-11T01:54:31,042   writing manifest file 'ilus.egg-info/SOURCES.txt'
2021-07-11T01:54:31,053   installing to build/bdist.linux-armv7l/wheel
2021-07-11T01:54:31,054   running install
2021-07-11T01:54:31,055   running install_lib
2021-07-11T01:54:31,058   creating build/bdist.linux-armv7l
2021-07-11T01:54:31,059   creating build/bdist.linux-armv7l/wheel
2021-07-11T01:54:31,060   creating build/bdist.linux-armv7l/wheel/ilus
2021-07-11T01:54:31,061   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/ilus
2021-07-11T01:54:31,064   creating build/bdist.linux-armv7l/wheel/ilus/launch
2021-07-11T01:54:31,065   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2021-07-11T01:54:31,068   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/launch
2021-07-11T01:54:31,070   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-07-11T01:54:31,070   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-07-11T01:54:31,072   copying build/lib/ilus/pipeline/wgs.py -> build/bdist.linux-armv7l/wheel/ilus/pipeline
2021-07-11T01:54:31,074   copying build/lib/ilus/utils.py -> build/bdist.linux-armv7l/wheel/ilus
2021-07-11T01:54:31,076   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/ilus
2021-07-11T01:54:31,079   creating build/bdist.linux-armv7l/wheel/ilus/modules
2021-07-11T01:54:31,080   creating build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-07-11T01:54:31,081   copying build/lib/ilus/modules/vcf/bcftools.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-07-11T01:54:31,084   copying build/lib/ilus/modules/vcf/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/vcf
2021-07-11T01:54:31,086   creating build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-07-11T01:54:31,087   copying build/lib/ilus/modules/ngsaligner/bwa.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-07-11T01:54:31,089   copying build/lib/ilus/modules/ngsaligner/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/ngsaligner
2021-07-11T01:54:31,091   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules
2021-07-11T01:54:31,093   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-07-11T01:54:31,094   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-07-11T01:54:31,096   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/ilus/modules/summary
2021-07-11T01:54:31,098   creating build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-07-11T01:54:31,099   copying build/lib/ilus/modules/variants/gatk.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-07-11T01:54:31,102   copying build/lib/ilus/modules/variants/__init__.py -> build/bdist.linux-armv7l/wheel/ilus/modules/variants
2021-07-11T01:54:31,104   running install_egg_info
2021-07-11T01:54:31,115   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/ilus-1.0.2-py3.7.egg-info
2021-07-11T01:54:31,127   running install_scripts
2021-07-11T01:54:31,200   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-11T01:54:31,205   creating build/bdist.linux-armv7l/wheel/ilus-1.0.2.dist-info/WHEEL
2021-07-11T01:54:31,208   creating '/tmp/pip-wheel-vk21cbpr/ilus-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-11T01:54:31,211   adding 'ilus/__init__.py'
2021-07-11T01:54:31,212   adding 'ilus/main.py'
2021-07-11T01:54:31,214   adding 'ilus/utils.py'
2021-07-11T01:54:31,216   adding 'ilus/launch/__init__.py'
2021-07-11T01:54:31,218   adding 'ilus/launch/runfunction.py'
2021-07-11T01:54:31,220   adding 'ilus/modules/__init__.py'
2021-07-11T01:54:31,221   adding 'ilus/modules/ngsaligner/__init__.py'
2021-07-11T01:54:31,223   adding 'ilus/modules/ngsaligner/bwa.py'
2021-07-11T01:54:31,225   adding 'ilus/modules/summary/__init__.py'
2021-07-11T01:54:31,226   adding 'ilus/modules/summary/bam.py'
2021-07-11T01:54:31,227   adding 'ilus/modules/variants/__init__.py'
2021-07-11T01:54:31,229   adding 'ilus/modules/variants/gatk.py'
2021-07-11T01:54:31,231   adding 'ilus/modules/vcf/__init__.py'
2021-07-11T01:54:31,232   adding 'ilus/modules/vcf/bcftools.py'
2021-07-11T01:54:31,234   adding 'ilus/pipeline/__init__.py'
2021-07-11T01:54:31,235   adding 'ilus/pipeline/wgs.py'
2021-07-11T01:54:31,238   adding 'ilus-1.0.2.dist-info/LICENSE.txt'
2021-07-11T01:54:31,239   adding 'ilus-1.0.2.dist-info/METADATA'
2021-07-11T01:54:31,240   adding 'ilus-1.0.2.dist-info/WHEEL'
2021-07-11T01:54:31,241   adding 'ilus-1.0.2.dist-info/entry_points.txt'
2021-07-11T01:54:31,242   adding 'ilus-1.0.2.dist-info/top_level.txt'
2021-07-11T01:54:31,242   adding 'ilus-1.0.2.dist-info/RECORD'
2021-07-11T01:54:31,244   removing build/bdist.linux-armv7l/wheel
2021-07-11T01:54:31,325   Building wheel for ilus (setup.py): finished with status 'done'
2021-07-11T01:54:31,327   Created wheel for ilus: filename=ilus-1.0.2-py3-none-any.whl size=16207 sha256=d390a4ba1fee50a6e7041c77c317907d02dc3a78aa4f6c43699ca60147b43161
2021-07-11T01:54:31,328   Stored in directory: /tmp/pip-ephem-wheel-cache-48_yzask/wheels/72/f5/41/f415b7c01b0dbb21311cf50dc2ad632215daa9377ea44b739a
2021-07-11T01:54:31,337 Successfully built ilus
2021-07-11T01:54:31,341 Removed build tracker: '/tmp/pip-req-tracker-er5abcpj'