2021-07-11T13:15:26,348 DEPRECATION: Python 3.5 reached the end of its life on September 13th, 2020. Please upgrade your Python as Python 3.5 is no longer maintained. pip 21.0 will drop support for Python 3.5 in January 2021. pip 21.0 will remove support for this functionality.
2021-07-11T13:15:27,049 Created temporary directory: /tmp/pip-ephem-wheel-cache-aod6b772
2021-07-11T13:15:27,054 Created temporary directory: /tmp/pip-req-tracker-zzdzo6ud
2021-07-11T13:15:27,055 Initialized build tracking at /tmp/pip-req-tracker-zzdzo6ud
2021-07-11T13:15:27,055 Created build tracker: /tmp/pip-req-tracker-zzdzo6ud
2021-07-11T13:15:27,056 Entered build tracker: /tmp/pip-req-tracker-zzdzo6ud
2021-07-11T13:15:27,057 Created temporary directory: /tmp/pip-wheel-dtzusoo6
2021-07-11T13:15:27,129 1 location(s) to search for versions of dark-matter:
2021-07-11T13:15:27,129 * https://pypi.org/simple/dark-matter/
2021-07-11T13:15:27,130 Fetching project page and analyzing links: https://pypi.org/simple/dark-matter/
2021-07-11T13:15:27,132 Getting page https://pypi.org/simple/dark-matter/
2021-07-11T13:15:27,137 Found index url https://pypi.org/simple
2021-07-11T13:15:27,871   Found link https://files.pythonhosted.org/packages/7a/5d/5704534d2e83673ec3c8534b39fe1a3f071291761d421803f6b2f04ca6b3/dark-matter-1.0.0.tar.gz#sha256=e915679610d0e94ca32b047d9ef8db6bb16aca43edbba1f7ea13d8f9a00b77d7 (from https://pypi.org/simple/dark-matter/), version: 1.0.0
2021-07-11T13:15:27,873   Found link https://files.pythonhosted.org/packages/4a/50/cc5fbbe75b550d6819af04e15ffc633d99b636f2e2d3c22ca4fc09ba2380/dark-matter-1.0.11.tar.gz#sha256=4157ac389269821b5c3a2de3b32922bf437df79e858f2ae8c7293479d393c90b (from https://pypi.org/simple/dark-matter/), version: 1.0.11
2021-07-11T13:15:27,874   Found link https://files.pythonhosted.org/packages/12/38/d44b5b2e9c08c507a583accb8ee246ce0f98a57c553d06e0199943d0dbf4/dark-matter-1.0.12.tar.gz#sha256=4cde134f526e38562547db4df9069bf9ae04564c92fdfc58cb17593934944861 (from https://pypi.org/simple/dark-matter/), version: 1.0.12
2021-07-11T13:15:27,875   Found link https://files.pythonhosted.org/packages/42/69/f0d13d1e43ec50d1ca85b70c27cc5333f85186668700544a7661c4d6d374/dark-matter-1.0.13.tar.gz#sha256=4b061448407711cab985c60762244028d74b32a322d7329a63138e4080d110d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.13
2021-07-11T13:15:27,876   Found link https://files.pythonhosted.org/packages/30/5a/9c56b0639b13c2c78cad8ac304e9c5d834eed0cab07d0dcd780b7be47249/dark-matter-1.0.16.tar.gz#sha256=c0c11585b9a71c47aa248794779111a9ab30c48e32e17540f95347d98ce116a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.16
2021-07-11T13:15:27,876   Found link https://files.pythonhosted.org/packages/26/8d/eb629def26e051253c4070e70dfc7c8258d513b2685fe4e92bb975b6e613/dark-matter-1.0.19.tar.gz#sha256=4944ba9c898e0b956b6a8c0b8e78e5aa91579ac469885c61e70d71e89f92883d (from https://pypi.org/simple/dark-matter/), version: 1.0.19
2021-07-11T13:15:27,877   Found link https://files.pythonhosted.org/packages/6d/6f/755f4b72e91ce15571d5884761d34627eba8dc173005bc8d41a2e4d2ec81/dark-matter-1.0.27.tar.gz#sha256=70b765fdc0932137cb1ee2b9183018261c218fd27c87a3f3ab5fabb93a9d0e3c (from https://pypi.org/simple/dark-matter/), version: 1.0.27
2021-07-11T13:15:27,878   Found link https://files.pythonhosted.org/packages/c1/41/a8cb27f9a68dd388473a594c0a5cb162fb1518d16197c357ec3617e9631c/dark-matter-1.0.32.tar.gz#sha256=405b6a4a51ac4c1660435c882fb548d1e6ad1a889779b3893bddf5f876732eef (from https://pypi.org/simple/dark-matter/), version: 1.0.32
2021-07-11T13:15:27,879   Found link https://files.pythonhosted.org/packages/26/f5/ea2b1d090cd00bb769d4e07cc4b697373c58dac65a52cf442a4f60a833ba/dark-matter-1.0.34.tar.gz#sha256=8fe1d83a0b0476164c5a4ca8197890e1936ed0d66a689870a71676a14f671539 (from https://pypi.org/simple/dark-matter/), version: 1.0.34
2021-07-11T13:15:27,880   Found link https://files.pythonhosted.org/packages/1d/a3/954c4ab15080556dbb33a1c2053ce9028b51cb160099978332b9252b5f93/dark-matter-1.0.36.tar.gz#sha256=9f639deedd5d4e4da0276c9a6780288c5d78e95b0c5b69d08b312ed10cc10d25 (from https://pypi.org/simple/dark-matter/), version: 1.0.36
2021-07-11T13:15:27,881   Found link https://files.pythonhosted.org/packages/fd/f7/352dcf1f8fb13001175a73acb52fff4bc20760300f87459d7e1e967823a1/dark-matter-1.0.38.tar.gz#sha256=b506f4177d9334da17c7fdd2054944851b96c3872be6d00cd5ece2de2ddc7d82 (from https://pypi.org/simple/dark-matter/), version: 1.0.38
2021-07-11T13:15:27,882   Found link https://files.pythonhosted.org/packages/17/94/5d0c424a52cc3d16793cef2a6b38a8a3542c4bda072c49d61efd18a1ec60/dark-matter-1.0.40.tar.gz#sha256=6e38036fc94ef7817c18d607b937b916ef1caafe40fe072d4748306b2e646a1f (from https://pypi.org/simple/dark-matter/), version: 1.0.40
2021-07-11T13:15:27,883   Found link https://files.pythonhosted.org/packages/4c/d7/9fa11fcb1f9923e3e980f1b493791ca3fbe6920a68a939971fb1eb333d05/dark-matter-1.0.41.tar.gz#sha256=e6e0364aa69a1fef4621e7d016839a3dffbcddff5d575ba4ee7f4af5cebd754d (from https://pypi.org/simple/dark-matter/), version: 1.0.41
2021-07-11T13:15:27,884   Found link https://files.pythonhosted.org/packages/1b/bb/9a2bffcc74c3bb8c2f45106443174a74dbe3424e45eb483ba7bf72da1fe2/dark-matter-1.0.42.tar.gz#sha256=2540312ed60fed3f5a52b5ec60409e712c8a562569baa132be6ab0c53edbec83 (from https://pypi.org/simple/dark-matter/), version: 1.0.42
2021-07-11T13:15:27,885   Found link https://files.pythonhosted.org/packages/e2/dd/cb0a17ce78d39d3b6d6dc93f54c49069b722569042312f7044143a67af30/dark-matter-1.0.43.tar.gz#sha256=17548e06b695864df72afb4e6664261333612b991373745f4e68f99ed48ace5f (from https://pypi.org/simple/dark-matter/), version: 1.0.43
2021-07-11T13:15:27,886   Found link https://files.pythonhosted.org/packages/88/ee/c6e7d4142ee1baca46ff0d7f295b7d5a4059648c815de4223f873f17a448/dark-matter-1.0.44.tar.gz#sha256=468d2be2ad00ddcdfafe52f09a6a8971b40964e816fdb95de2772d32879d3fc5 (from https://pypi.org/simple/dark-matter/), version: 1.0.44
2021-07-11T13:15:27,887   Found link https://files.pythonhosted.org/packages/7e/71/19001567a982f1ea235095e6f2042990e0666c343bfd985b2c2b8a6a6edc/dark-matter-1.0.45.tar.gz#sha256=b60e397a82b3183fae2cdee32ac92f43f4533bcb5a7683d5fc3e58dd6ceee4fd (from https://pypi.org/simple/dark-matter/), version: 1.0.45
2021-07-11T13:15:27,888   Found link https://files.pythonhosted.org/packages/9b/71/0395a4c77fc9443e4b1c8d6d3787d527c2d06ecf56c75db9779bb602d594/dark-matter-1.0.46.tar.gz#sha256=66aaa9872db60c407b047f5e997c8155fe0626df9222b251a6f65b15ca4d3423 (from https://pypi.org/simple/dark-matter/), version: 1.0.46
2021-07-11T13:15:27,889   Found link https://files.pythonhosted.org/packages/85/3b/b68351e5280d2f65b26ca3e225a5a0385d921a6d25cef62563eeaec42343/dark-matter-1.0.47.tar.gz#sha256=b51c372b06fe94fcc93f8795aa5d2b2a547108934cc5c429e89972cdea153baf (from https://pypi.org/simple/dark-matter/), version: 1.0.47
2021-07-11T13:15:27,890   Found link https://files.pythonhosted.org/packages/fb/4c/6e27c41b817fc86240a956472978b226008da91e8c2b2b5dd991091c3a2d/dark-matter-1.0.48.tar.gz#sha256=e9ca7aad5b5631658d2ab154108568faa6196f7cea8dfaef1881d0013a3c59bd (from https://pypi.org/simple/dark-matter/), version: 1.0.48
2021-07-11T13:15:27,891   Found link https://files.pythonhosted.org/packages/07/65/1253b1fcd6c75fbbc19eee09982ec62023742959583d6687c666befffb71/dark-matter-1.0.49.tar.gz#sha256=7fe2af86f08e9e2416869c8fa571fc79b5a6965d4e2e9624536984a6ede94d5e (from https://pypi.org/simple/dark-matter/), version: 1.0.49
2021-07-11T13:15:27,892   Found link https://files.pythonhosted.org/packages/ac/93/e94fa7a2455aa54ebc294bb5bd93c11aca3c461073aee1fab28b4ee380ae/dark-matter-1.0.50.tar.gz#sha256=cd9ce5690ff46e8a27b17505dc500d0dc065bb403d6aa731615fbcfa0e9ecb50 (from https://pypi.org/simple/dark-matter/), version: 1.0.50
2021-07-11T13:15:27,892   Found link https://files.pythonhosted.org/packages/b9/ce/7d74daae572ebb32ffdbd439440361f5bf39eb9f9d0f55654878cbd7cbb2/dark-matter-1.0.51.tar.gz#sha256=ca7762302eb529ec15dbc0bba35397dc018cb3b43b371b02495ba1caa8fc6fe2 (from https://pypi.org/simple/dark-matter/), version: 1.0.51
2021-07-11T13:15:27,893   Found link https://files.pythonhosted.org/packages/cd/fb/8ff473df5992d3cdfc57151ff5595561c42fff343fcc01c76f3b95cd1eb9/dark-matter-1.0.52.tar.gz#sha256=7c5cadd1c74c4c85d55ec808f2ecd1a86abf726b7f3dc4b8755a32dc81a57094 (from https://pypi.org/simple/dark-matter/), version: 1.0.52
2021-07-11T13:15:27,894   Found link https://files.pythonhosted.org/packages/d4/a7/8e4a7fc079ce3324a605902fb7fe865ab846ba3376408987680cc68703c7/dark-matter-1.0.53.tar.gz#sha256=c06386be8fc1f85e76fc6f7c6b8ea6597503a9c238e5368e0975f18ea9fe3f6a (from https://pypi.org/simple/dark-matter/), version: 1.0.53
2021-07-11T13:15:27,895   Found link https://files.pythonhosted.org/packages/a8/50/55d45de9c1903904647e651a955b56dff452d61f9e095a5004a149ab2eca/dark-matter-1.0.54.tar.gz#sha256=cb4fefda8208eb0d40c4b172c30286b4be960018e89c89aacb94f177cbd0a77a (from https://pypi.org/simple/dark-matter/), version: 1.0.54
2021-07-11T13:15:27,896   Found link https://files.pythonhosted.org/packages/47/41/cc272f599662d184f754abc67ee763ac9da02c5d9ef5d1155effe67d132f/dark-matter-1.0.55.tar.gz#sha256=d1b4537860411417b98b32252f8a363623c263464c32d994cd442de74e36d4d9 (from https://pypi.org/simple/dark-matter/), version: 1.0.55
2021-07-11T13:15:27,897   Found link https://files.pythonhosted.org/packages/d3/d8/250e7506219460c7da81f6f51bf93cce13d21b461392dcbfa1311e504a95/dark-matter-1.0.56.tar.gz#sha256=d5cbddab4a2b8cc948329f46660259c2bb30b866446ddfc12e8c6b8ddc9822ff (from https://pypi.org/simple/dark-matter/), version: 1.0.56
2021-07-11T13:15:27,898   Found link https://files.pythonhosted.org/packages/81/c7/3bf4ec17c4f0e02ca7741f7ede49d58680f12b48a4a7350031ffe8b38ba1/dark-matter-1.0.57.tar.gz#sha256=3d33c771486b56c8a4dd10fb70f91e4c0ce1d279d05cbdf6dac92cceffb35809 (from https://pypi.org/simple/dark-matter/), version: 1.0.57
2021-07-11T13:15:27,900   Found link https://files.pythonhosted.org/packages/f1/d5/6e02cb418664b484f16ea42b60a86add44acf56dda4875001528957c27b2/dark-matter-1.0.58.tar.gz#sha256=6a9e75658cacc7ae7e9926d0debd5605e15e5761452455e4f65c96b3cd947c6b (from https://pypi.org/simple/dark-matter/), version: 1.0.58
2021-07-11T13:15:27,901   Found link https://files.pythonhosted.org/packages/5a/d3/a69ed2feeac3afcb852a8bcce6cadd5b541cd78de3756f0519a62ca29371/dark-matter-1.0.59.tar.gz#sha256=1f0c71e01cce5ca62b1599c974ff24b8b211349f880c365ecbdce369c6877280 (from https://pypi.org/simple/dark-matter/), version: 1.0.59
2021-07-11T13:15:27,902   Found link https://files.pythonhosted.org/packages/68/70/96bd4a89d1c5f40e05d734be94ae1571be35c0b4c4e19e22c0be893c9e1c/dark-matter-1.0.60.tar.gz#sha256=933a4cc3f34ed03198cacedaab9cc0915402bfff0ad238a0f879c7b246243f02 (from https://pypi.org/simple/dark-matter/), version: 1.0.60
2021-07-11T13:15:27,902   Found link https://files.pythonhosted.org/packages/55/52/ab50ff5d12bb5efd1171a964a4f5baa03edb0091dfa5c79af08fbbe4da16/dark-matter-1.0.61.tar.gz#sha256=09e5bdfd05c954d34fc87541f61a416169ae53daea1a22723de915a9f50ea9e4 (from https://pypi.org/simple/dark-matter/), version: 1.0.61
2021-07-11T13:15:27,903   Found link https://files.pythonhosted.org/packages/ab/de/cc9a342e642f66e60c8ff98d1786229d5cfcfb0306158f0c19ef61059303/dark-matter-1.0.62.tar.gz#sha256=6f7347e0923abd2eb2118862a03966c5204262e5d496e11900de3aed43724265 (from https://pypi.org/simple/dark-matter/), version: 1.0.62
2021-07-11T13:15:27,904   Found link https://files.pythonhosted.org/packages/cd/a5/713b8a9f25437fafe2a34291ca34f945c9e1394c2e600f73e5abd8e3282e/dark-matter-1.0.63.tar.gz#sha256=fca60020cce6b249f61f6ae5e268dbd20f71a2d257bb668c84313ca29d6873b1 (from https://pypi.org/simple/dark-matter/), version: 1.0.63
2021-07-11T13:15:27,905   Found link https://files.pythonhosted.org/packages/77/fe/320a21e0c4c116bd28487af7156a9937a90dcc44f70c4f720267e9b14291/dark-matter-1.0.64.tar.gz#sha256=d1c1764b08f3fbdf71f46a5f9acbe0deadb96d5af5b4b99d8b19e13e4abe9e3d (from https://pypi.org/simple/dark-matter/), version: 1.0.64
2021-07-11T13:15:27,906   Found link https://files.pythonhosted.org/packages/a0/08/9be54a6570a6acf6f87d5ca8ff9f91660697fc32212d0be3601785e796b9/dark-matter-1.0.65.tar.gz#sha256=1332fafc881be70d395aa69ed174c0036941f2d4f8e170f24ba6c0fa14397de6 (from https://pypi.org/simple/dark-matter/), version: 1.0.65
2021-07-11T13:15:27,907   Found link https://files.pythonhosted.org/packages/7b/61/46caedf674111789641d78a4252b26d1ea43d3d8c77f906b3abc7c638acc/dark-matter-1.0.66.tar.gz#sha256=a0ad6f3e8afe8294c1aa5011577533334d2a6cbb16eaaa9b48a451fe0a9db293 (from https://pypi.org/simple/dark-matter/), version: 1.0.66
2021-07-11T13:15:27,908   Found link https://files.pythonhosted.org/packages/97/54/fc8129e31460a4007b2d328e37efeb55a3488b7a7a34592e0c738ac27079/dark-matter-1.0.67.tar.gz#sha256=709dbe5d0c6df732587900ea0ee3a8508fd43a37d7aff3ec5387bbee7d7917cd (from https://pypi.org/simple/dark-matter/), version: 1.0.67
2021-07-11T13:15:27,909   Found link https://files.pythonhosted.org/packages/e5/33/890848c35cb392c57712943c79ffe317ce401bd2db2a616637719f8c5522/dark-matter-1.0.68.tar.gz#sha256=5426893dee726d1f3da0d38176f4489d983e698b36586b2a5d4030ccfd38ae9f (from https://pypi.org/simple/dark-matter/), version: 1.0.68
2021-07-11T13:15:27,910   Found link https://files.pythonhosted.org/packages/c2/23/5e4253583920bada6ee2f5204fbaf8a745527f8ba5c585ac8891fa959991/dark-matter-1.0.69.tar.gz#sha256=494ab515566d76d337f7b25186921029e01e84460ae1f2d81c355a9ae135a18c (from https://pypi.org/simple/dark-matter/), version: 1.0.69
2021-07-11T13:15:27,911   Found link https://files.pythonhosted.org/packages/3d/6a/1cf82dcc5f77ac300a3ee4c1fce72edad81280795e42f0da80b67b3a1838/dark-matter-1.0.70.tar.gz#sha256=f74facc816c78353ee9cdeeac334e9e03d05c38cc381588def6443125fe7ff17 (from https://pypi.org/simple/dark-matter/), version: 1.0.70
2021-07-11T13:15:27,912   Found link https://files.pythonhosted.org/packages/64/9a/ace6de00719320e68408c58f3abe036645a29901f17e3e1cd356260cb9f5/dark-matter-1.0.71.tar.gz#sha256=f0ed0a32bf00786a18d3b50596ad79ec24f01ed3fa9d56f36efec9db58a750a6 (from https://pypi.org/simple/dark-matter/), version: 1.0.71
2021-07-11T13:15:27,913   Found link https://files.pythonhosted.org/packages/94/d0/a1e5aabab8ad66683757b3b0569d672da3528a5a8619f830f33c2d6bb179/dark-matter-1.0.72.tar.gz#sha256=3cab3d9241f6fccf0e1a88ed3f572b90bd296c41810b85b49054ba4238742061 (from https://pypi.org/simple/dark-matter/), version: 1.0.72
2021-07-11T13:15:27,914   Found link https://files.pythonhosted.org/packages/a2/1a/f7d17f7e7d196b1fb5382a27adc6ae61bbc4c47ad812c9e78de890b61743/dark-matter-1.0.73.tar.gz#sha256=ef4359ea0a02e00b3f1b06754da34fb6cfbe030ecd3976dac50841c0ae46c062 (from https://pypi.org/simple/dark-matter/), version: 1.0.73
2021-07-11T13:15:27,915   Found link https://files.pythonhosted.org/packages/8e/dc/f8fbeb00d964a029f3e444ed65ba9ca0f69e83c4b19d93efb858ac9d67cf/dark-matter-1.0.74.tar.gz#sha256=90c2fc0dcc27bbd558041ae982768c630c602360754f3e07577c2711966c1fb7 (from https://pypi.org/simple/dark-matter/), version: 1.0.74
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2021-07-11T13:15:27,916   Found link https://files.pythonhosted.org/packages/03/bb/45b48f894b2b3f2a08e9e3c3c07ce133db94e91a363688f3ab9ce4969d80/dark-matter-1.0.76.tar.gz#sha256=940772c257a0f785f0f5efa53a7075692b5fa889a6c1d3432e17929fc30a1179 (from https://pypi.org/simple/dark-matter/), version: 1.0.76
2021-07-11T13:15:27,917   Found link https://files.pythonhosted.org/packages/5a/b2/63dea9b0ab7517190dd58b390cd9f0c007da74ad33c1ce37a74e6640e62c/dark-matter-1.0.77.tar.gz#sha256=e027b5a28158d9e74d712bdc4651580fe3c14be15a124a7a7634523e2cafd842 (from https://pypi.org/simple/dark-matter/), version: 1.0.77
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2021-07-11T13:15:28,113   Found link https://files.pythonhosted.org/packages/fe/74/37ca77e38cc0080fbe164321e7ab6be1552960f966c11c12ba6a138c1cdb/dark-matter-3.2.3.tar.gz#sha256=51d99ef9b8c7628613fed3519fac86d2575c56f4977150d0ec017a440b869692 (from https://pypi.org/simple/dark-matter/), version: 3.2.3
2021-07-11T13:15:28,113   Found link https://files.pythonhosted.org/packages/bf/8e/017b2bbd617c0e4dec88b71755855fd32a8fa54ca0c114896475378d8c10/dark-matter-3.2.4.tar.gz#sha256=1bf86c2be13ad123baff3cd4cec2443bf16ec9afca83a50da3aad256033c61e3 (from https://pypi.org/simple/dark-matter/), version: 3.2.4
2021-07-11T13:15:28,114   Found link https://files.pythonhosted.org/packages/95/55/bb9433858a72e5030fe4579502698e18fe9f21ec51f4d34a9f3f33913aed/dark-matter-3.2.5.tar.gz#sha256=1a31e2be7d17f7a47cc07b566ed2a822559fb09072efda9827666ba83d560c41 (from https://pypi.org/simple/dark-matter/), version: 3.2.5
2021-07-11T13:15:28,115   Found link https://files.pythonhosted.org/packages/31/42/f98d746754c0a92d708b8c77d5cc6156cdd264c04b850f94d4b130e573e5/dark-matter-3.2.6.tar.gz#sha256=288126f141d0ec87735c121184f06121f694e6a565df8f962aec7ec84a41058a (from https://pypi.org/simple/dark-matter/), version: 3.2.6
2021-07-11T13:15:28,116   Found link https://files.pythonhosted.org/packages/91/46/1547ccfdd762ae0eca10c8781419157a1350f009d02f1eaf0f02f4666d43/dark-matter-4.0.1.tar.gz#sha256=0bc78eb30abeb495a923f91ca67042a947c142b0bfef173c9c04168521d596bb (from https://pypi.org/simple/dark-matter/), version: 4.0.1
2021-07-11T13:15:28,117   Found link https://files.pythonhosted.org/packages/39/dc/3679eaa104a9298af74106ead1b3de2e8f4105c9762d489af4ad9f31c177/dark-matter-4.0.2.tar.gz#sha256=d7c6f9fc10eafea5539e25c54752ad038d69111889588166b9c1ea34c2fcc117 (from https://pypi.org/simple/dark-matter/), version: 4.0.2
2021-07-11T13:15:28,118   Found link https://files.pythonhosted.org/packages/89/97/e6498f8e9ec143776ae410e0ffb0c6167e66178e338662a8b159f65f8f27/dark-matter-4.0.3.tar.gz#sha256=781729df875c97b926a1e754892012ee23fe4da008e34ba596255006f2591bf9 (from https://pypi.org/simple/dark-matter/), version: 4.0.3
2021-07-11T13:15:28,119   Found link https://files.pythonhosted.org/packages/34/2e/fad95a160400f67ee58e3f61553491586e807eba8884e6c53a9fad577e8a/dark-matter-4.0.5.tar.gz#sha256=475340d9b3e0c0f904284bc7ad0a025b8425c06ef80f17a3a61758b02a93c9a7 (from https://pypi.org/simple/dark-matter/), version: 4.0.5
2021-07-11T13:15:28,277 Given no hashes to check 1 links for project 'dark-matter': discarding no candidates
2021-07-11T13:15:28,318 Collecting dark-matter==4.0.5
2021-07-11T13:15:28,322   Created temporary directory: /tmp/pip-unpack-z68lwryk
2021-07-11T13:15:28,822   Downloading dark-matter-4.0.5.tar.gz (333 kB)
2021-07-11T13:15:30,193   Added dark-matter==4.0.5 from https://files.pythonhosted.org/packages/34/2e/fad95a160400f67ee58e3f61553491586e807eba8884e6c53a9fad577e8a/dark-matter-4.0.5.tar.gz#sha256=475340d9b3e0c0f904284bc7ad0a025b8425c06ef80f17a3a61758b02a93c9a7 to build tracker '/tmp/pip-req-tracker-zzdzo6ud'
2021-07-11T13:15:30,195     Running setup.py (path:/tmp/pip-wheel-dtzusoo6/dark-matter_58d61f419e2c416782a8b810945e1e20/setup.py) egg_info for package dark-matter
2021-07-11T13:15:30,197     Created temporary directory: /tmp/pip-pip-egg-info-hrqhwz_6
2021-07-11T13:15:30,198     Running command python setup.py egg_info
2021-07-11T13:15:32,746     running egg_info
2021-07-11T13:15:32,752     creating /tmp/pip-pip-egg-info-hrqhwz_6/dark_matter.egg-info
2021-07-11T13:15:32,756     writing top-level names to /tmp/pip-pip-egg-info-hrqhwz_6/dark_matter.egg-info/top_level.txt
2021-07-11T13:15:32,759     writing /tmp/pip-pip-egg-info-hrqhwz_6/dark_matter.egg-info/PKG-INFO
2021-07-11T13:15:32,763     writing requirements to /tmp/pip-pip-egg-info-hrqhwz_6/dark_matter.egg-info/requires.txt
2021-07-11T13:15:32,765     writing dependency_links to /tmp/pip-pip-egg-info-hrqhwz_6/dark_matter.egg-info/dependency_links.txt
2021-07-11T13:15:32,768     writing manifest file '/tmp/pip-pip-egg-info-hrqhwz_6/dark_matter.egg-info/SOURCES.txt'
2021-07-11T13:15:33,189     reading manifest file '/tmp/pip-pip-egg-info-hrqhwz_6/dark_matter.egg-info/SOURCES.txt'
2021-07-11T13:15:33,220     writing manifest file '/tmp/pip-pip-egg-info-hrqhwz_6/dark_matter.egg-info/SOURCES.txt'
2021-07-11T13:15:33,355   Source in /tmp/pip-wheel-dtzusoo6/dark-matter_58d61f419e2c416782a8b810945e1e20 has version 4.0.5, which satisfies requirement dark-matter==4.0.5 from https://files.pythonhosted.org/packages/34/2e/fad95a160400f67ee58e3f61553491586e807eba8884e6c53a9fad577e8a/dark-matter-4.0.5.tar.gz#sha256=475340d9b3e0c0f904284bc7ad0a025b8425c06ef80f17a3a61758b02a93c9a7
2021-07-11T13:15:33,357   Removed dark-matter==4.0.5 from https://files.pythonhosted.org/packages/34/2e/fad95a160400f67ee58e3f61553491586e807eba8884e6c53a9fad577e8a/dark-matter-4.0.5.tar.gz#sha256=475340d9b3e0c0f904284bc7ad0a025b8425c06ef80f17a3a61758b02a93c9a7 from build tracker '/tmp/pip-req-tracker-zzdzo6ud'
2021-07-11T13:15:33,365 Created temporary directory: /tmp/pip-unpack-ak1lrxql
2021-07-11T13:15:33,366 Building wheels for collected packages: dark-matter
2021-07-11T13:15:33,374   Created temporary directory: /tmp/pip-wheel-fe074ml5
2021-07-11T13:15:33,375   Building wheel for dark-matter (setup.py): started
2021-07-11T13:15:33,376   Destination directory: /tmp/pip-wheel-fe074ml5
2021-07-11T13:15:33,376   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-dtzusoo6/dark-matter_58d61f419e2c416782a8b810945e1e20/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-dtzusoo6/dark-matter_58d61f419e2c416782a8b810945e1e20/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-fe074ml5
2021-07-11T13:15:35,952   running bdist_wheel
2021-07-11T13:15:35,969   running build
2021-07-11T13:15:35,969   running build_py
2021-07-11T13:15:36,314   creating build
2021-07-11T13:15:36,315   creating build/lib
2021-07-11T13:15:36,318   creating build/lib/dark
2021-07-11T13:15:36,321   copying dark/hsp.py -> build/lib/dark
2021-07-11T13:15:36,327   copying dark/html.py -> build/lib/dark
2021-07-11T13:15:36,333   copying dark/dna.py -> build/lib/dark
2021-07-11T13:15:36,340   copying dark/alignments.py -> build/lib/dark
2021-07-11T13:15:36,346   copying dark/filter.py -> build/lib/dark
2021-07-11T13:15:36,355   copying dark/ncbidb.py -> build/lib/dark
2021-07-11T13:15:36,360   copying dark/genbank.py -> build/lib/dark
2021-07-11T13:15:36,366   copying dark/fasta_ss.py -> build/lib/dark
2021-07-11T13:15:36,371   copying dark/graphics.py -> build/lib/dark
2021-07-11T13:15:36,379   copying dark/distance.py -> build/lib/dark
2021-07-11T13:15:36,382   copying dark/reads.py -> build/lib/dark
2021-07-11T13:15:36,393   copying dark/summarize.py -> build/lib/dark
2021-07-11T13:15:36,399   copying dark/__init__.py -> build/lib/dark
2021-07-11T13:15:36,404   copying dark/fastq.py -> build/lib/dark
2021-07-11T13:15:36,409   copying dark/score.py -> build/lib/dark
2021-07-11T13:15:36,413   copying dark/features.py -> build/lib/dark
2021-07-11T13:15:36,418   copying dark/aligners.py -> build/lib/dark
2021-07-11T13:15:36,422   copying dark/cigar.py -> build/lib/dark
2021-07-11T13:15:36,426   copying dark/baseimage.py -> build/lib/dark
2021-07-11T13:15:36,430   copying dark/btop.py -> build/lib/dark
2021-07-11T13:15:36,434   copying dark/fasta.py -> build/lib/dark
2021-07-11T13:15:36,440   copying dark/entrez.py -> build/lib/dark
2021-07-11T13:15:36,444   copying dark/mutations.py -> build/lib/dark
2021-07-11T13:15:36,449   copying dark/aa.py -> build/lib/dark
2021-07-11T13:15:36,457   copying dark/local_align.py -> build/lib/dark
2021-07-11T13:15:36,462   copying dark/taxonomy.py -> build/lib/dark
2021-07-11T13:15:36,469   copying dark/sam.py -> build/lib/dark
2021-07-11T13:15:36,477   copying dark/dimension.py -> build/lib/dark
2021-07-11T13:15:36,482   copying dark/codonDistance.py -> build/lib/dark
2021-07-11T13:15:36,487   copying dark/orfs.py -> build/lib/dark
2021-07-11T13:15:36,492   copying dark/proteins.py -> build/lib/dark
2021-07-11T13:15:36,501   copying dark/titles.py -> build/lib/dark
2021-07-11T13:15:36,507   copying dark/consensus.py -> build/lib/dark
2021-07-11T13:15:36,512   copying dark/analyze_reads.py -> build/lib/dark
2021-07-11T13:15:36,518   copying dark/errors.py -> build/lib/dark
2021-07-11T13:15:36,523   copying dark/ipynb.py -> build/lib/dark
2021-07-11T13:15:36,528   copying dark/process.py -> build/lib/dark
2021-07-11T13:15:36,534   copying dark/intervals.py -> build/lib/dark
2021-07-11T13:15:36,538   copying dark/utils.py -> build/lib/dark
2021-07-11T13:15:36,543   copying dark/database.py -> build/lib/dark
2021-07-11T13:15:36,547   copying dark/genomes.py -> build/lib/dark
2021-07-11T13:15:36,552   copying dark/bowtie2.py -> build/lib/dark
2021-07-11T13:15:36,557   copying dark/fpcache.py -> build/lib/dark
2021-07-11T13:15:36,561   copying dark/sequence.py -> build/lib/dark
2021-07-11T13:15:36,565   copying dark/simplify.py -> build/lib/dark
2021-07-11T13:15:36,569   copying dark/colors.py -> build/lib/dark
2021-07-11T13:15:36,575   creating build/lib/dark/blast
2021-07-11T13:15:36,576   copying dark/blast/hsp.py -> build/lib/dark/blast
2021-07-11T13:15:36,581   copying dark/blast/alignments.py -> build/lib/dark/blast
2021-07-11T13:15:36,587   copying dark/blast/__init__.py -> build/lib/dark/blast
2021-07-11T13:15:36,590   copying dark/blast/score.py -> build/lib/dark/blast
2021-07-11T13:15:36,594   copying dark/blast/records.py -> build/lib/dark/blast
2021-07-11T13:15:36,598   copying dark/blast/hacks.py -> build/lib/dark/blast
2021-07-11T13:15:36,602   copying dark/blast/params.py -> build/lib/dark/blast
2021-07-11T13:15:36,606   copying dark/blast/conversion.py -> build/lib/dark/blast
2021-07-11T13:15:36,612   creating build/lib/dark/diamond
2021-07-11T13:15:36,614   copying dark/diamond/hsp.py -> build/lib/dark/diamond
2021-07-11T13:15:36,620   copying dark/diamond/alignments.py -> build/lib/dark/diamond
2021-07-11T13:15:36,625   copying dark/diamond/__init__.py -> build/lib/dark/diamond
2021-07-11T13:15:36,628   copying dark/diamond/sam.py -> build/lib/dark/diamond
2021-07-11T13:15:36,633   copying dark/diamond/conversion.py -> build/lib/dark/diamond
2021-07-11T13:15:36,639   copying dark/diamond/run.py -> build/lib/dark/diamond
2021-07-11T13:15:36,644   creating build/lib/dark/civ
2021-07-11T13:15:36,646   copying dark/civ/html.py -> build/lib/dark/civ
2021-07-11T13:15:36,651   copying dark/civ/graphics.py -> build/lib/dark/civ
2021-07-11T13:15:36,657   copying dark/civ/__init__.py -> build/lib/dark/civ
2021-07-11T13:15:36,660   copying dark/civ/proteins.py -> build/lib/dark/civ
2021-07-11T13:15:36,695   running build_scripts
2021-07-11T13:15:36,697   creating build/scripts-3.5
2021-07-11T13:15:36,699   copying and adjusting bin/aa-info.py -> build/scripts-3.5
2021-07-11T13:15:36,703   copying and adjusting bin/aa-to-dna.py -> build/scripts-3.5
2021-07-11T13:15:36,706   copying and adjusting bin/aa-to-properties.py -> build/scripts-3.5
2021-07-11T13:15:36,709   copying and adjusting bin/adaptor-distances.py -> build/scripts-3.5
2021-07-11T13:15:36,712   copying and adjusting bin/alignment-panel-civ.py -> build/scripts-3.5
2021-07-11T13:15:36,718   copying and adjusting bin/alignments-per-read.py -> build/scripts-3.5
2021-07-11T13:15:36,721   copying and adjusting bin/bit-score-to-e-value.py -> build/scripts-3.5
2021-07-11T13:15:36,724   copying and adjusting bin/cat-json-blast-records.py -> build/scripts-3.5
2021-07-11T13:15:36,727   copying and adjusting bin/check-fasta-json-blast-consistency.py -> build/scripts-3.5
2021-07-11T13:15:36,731   copying and adjusting bin/codon-distance.py -> build/scripts-3.5
2021-07-11T13:15:36,734   copying and adjusting bin/compare-consensuses.py -> build/scripts-3.5
2021-07-11T13:15:36,739   copying and adjusting bin/compare-sequences.py -> build/scripts-3.5
2021-07-11T13:15:36,743   copying and adjusting bin/convert-blast-xml-to-json.py -> build/scripts-3.5
2021-07-11T13:15:36,746   copying and adjusting bin/convert-diamond-to-json.py -> build/scripts-3.5
2021-07-11T13:15:36,750   copying and adjusting bin/convert-diamond-to-sam.py -> build/scripts-3.5
2021-07-11T13:15:36,754   copying bin/convert-sam-to-fastq.sh -> build/scripts-3.5
2021-07-11T13:15:36,760   copying and adjusting bin/create-newick-relabeling-output.py -> build/scripts-3.5
2021-07-11T13:15:36,764   copying and adjusting bin/dark-matter-version.py -> build/scripts-3.5
2021-07-11T13:15:36,768   copying and adjusting bin/describe-protein-database.py -> build/scripts-3.5
2021-07-11T13:15:36,773   copying and adjusting bin/dna-to-aa.py -> build/scripts-3.5
2021-07-11T13:15:36,778   copying bin/download-genbank.sh -> build/scripts-3.5
2021-07-11T13:15:36,783   copying and adjusting bin/e-value-to-bit-score.py -> build/scripts-3.5
2021-07-11T13:15:36,787   copying and adjusting bin/extract-ORFs.py -> build/scripts-3.5
2021-07-11T13:15:36,791   copying and adjusting bin/fasta-base-indices.py -> build/scripts-3.5
2021-07-11T13:15:36,794   copying and adjusting bin/fasta-count.py -> build/scripts-3.5
2021-07-11T13:15:36,798   copying bin/fasta-diff.sh -> build/scripts-3.5
2021-07-11T13:15:36,803   copying and adjusting bin/fasta-identity-table.py -> build/scripts-3.5
2021-07-11T13:15:36,810   copying and adjusting bin/fasta-ids.py -> build/scripts-3.5
2021-07-11T13:15:36,813   copying and adjusting bin/fasta-join.py -> build/scripts-3.5
2021-07-11T13:15:36,816   copying and adjusting bin/fasta-lengths.py -> build/scripts-3.5
2021-07-11T13:15:36,819   copying and adjusting bin/fasta-sequences.py -> build/scripts-3.5
2021-07-11T13:15:36,822   copying and adjusting bin/fasta-sort.py -> build/scripts-3.5
2021-07-11T13:15:36,825   copying and adjusting bin/fasta-split-by-id.py -> build/scripts-3.5
2021-07-11T13:15:36,829   copying and adjusting bin/fasta-split.py -> build/scripts-3.5
2021-07-11T13:15:36,832   copying and adjusting bin/fasta-subset.py -> build/scripts-3.5
2021-07-11T13:15:36,836   copying and adjusting bin/fasta-subtraction.py -> build/scripts-3.5
2021-07-11T13:15:36,839   copying and adjusting bin/fasta-to-phylip.py -> build/scripts-3.5
2021-07-11T13:15:36,842   copying and adjusting bin/fasta-variable-sites.py -> build/scripts-3.5
2021-07-11T13:15:36,846   copying and adjusting bin/filter-fasta-by-complexity.py -> build/scripts-3.5
2021-07-11T13:15:36,850   copying and adjusting bin/filter-fasta-by-taxonomy.py -> build/scripts-3.5
2021-07-11T13:15:36,854   copying and adjusting bin/filter-fasta.py -> build/scripts-3.5
2021-07-11T13:15:36,858   copying and adjusting bin/filter-hits-to-fasta.py -> build/scripts-3.5
2021-07-11T13:15:36,864   copying and adjusting bin/filter-reads-alignments.py -> build/scripts-3.5
2021-07-11T13:15:36,870   copying and adjusting bin/filter-sam.py -> build/scripts-3.5
2021-07-11T13:15:36,876   copying and adjusting bin/find-hits.py -> build/scripts-3.5
2021-07-11T13:15:36,880   copying and adjusting bin/format-fasta.py -> build/scripts-3.5
2021-07-11T13:15:36,883   copying and adjusting bin/genome-protein-summary.py -> build/scripts-3.5
2021-07-11T13:15:36,888   copying and adjusting bin/get-features.py -> build/scripts-3.5
2021-07-11T13:15:36,891   copying and adjusting bin/get-hosts.py -> build/scripts-3.5
2021-07-11T13:15:36,895   copying and adjusting bin/get-reads.py -> build/scripts-3.5
2021-07-11T13:15:36,899   copying and adjusting bin/get-taxonomy.py -> build/scripts-3.5
2021-07-11T13:15:36,902   copying and adjusting bin/graph-evalues.py -> build/scripts-3.5
2021-07-11T13:15:36,905   copying and adjusting bin/local-align.py -> build/scripts-3.5
2021-07-11T13:15:36,909   copying and adjusting bin/make-consensus.py -> build/scripts-3.5
2021-07-11T13:15:36,914   copying and adjusting bin/make-fasta-database.py -> build/scripts-3.5
2021-07-11T13:15:36,917   copying and adjusting bin/make-protein-database.py -> build/scripts-3.5
2021-07-11T13:15:36,922   copying and adjusting bin/ncbi-fetch-id.py -> build/scripts-3.5
2021-07-11T13:15:36,925   copying and adjusting bin/newick-to-ascii.py -> build/scripts-3.5
2021-07-11T13:15:36,928   copying and adjusting bin/noninteractive-alignment-panel.py -> build/scripts-3.5
2021-07-11T13:15:36,935   copying and adjusting bin/parse-genbank-flat-file.py -> build/scripts-3.5
2021-07-11T13:15:36,938   copying and adjusting bin/position-summary.py -> build/scripts-3.5
2021-07-11T13:15:36,942   copying bin/pre-commit.sh -> build/scripts-3.5
2021-07-11T13:15:36,946   copying and adjusting bin/print-blast-xml-for-derek.py -> build/scripts-3.5
2021-07-11T13:15:36,949   copying and adjusting bin/print-blast-xml.py -> build/scripts-3.5
2021-07-11T13:15:36,952   copying and adjusting bin/print-read-lengths.py -> build/scripts-3.5
2021-07-11T13:15:36,956   copying and adjusting bin/proteins-to-pathogens.py -> build/scripts-3.5
2021-07-11T13:15:36,962   copying and adjusting bin/proteins-to-pathogens-civ.py -> build/scripts-3.5
2021-07-11T13:15:36,970   copying and adjusting bin/randomize-fasta.py -> build/scripts-3.5
2021-07-11T13:15:36,974   copying and adjusting bin/read-blast-json.py -> build/scripts-3.5
2021-07-11T13:15:36,978   copying and adjusting bin/read-blast-xml.py -> build/scripts-3.5
2021-07-11T13:15:36,982   copying and adjusting bin/relabel-newick-tree.py -> build/scripts-3.5
2021-07-11T13:15:36,986   copying and adjusting bin/run-bwa.py -> build/scripts-3.5
2021-07-11T13:15:36,989   copying and adjusting bin/run-bowtie2.py -> build/scripts-3.5
2021-07-11T13:15:36,995   copying and adjusting bin/sam-coverage.py -> build/scripts-3.5
2021-07-11T13:15:36,999   copying and adjusting bin/sam-coverage-depth.py -> build/scripts-3.5
2021-07-11T13:15:37,003   copying and adjusting bin/sam-to-fasta-alignment.py -> build/scripts-3.5
2021-07-11T13:15:37,006   copying and adjusting bin/sam-reference-read-counts.py -> build/scripts-3.5
2021-07-11T13:15:37,011   copying and adjusting bin/sam-references.py -> build/scripts-3.5
2021-07-11T13:15:37,014   copying and adjusting bin/sff-to-fastq.py -> build/scripts-3.5
2021-07-11T13:15:37,017   copying and adjusting bin/split-fasta-by-adaptors.py -> build/scripts-3.5
2021-07-11T13:15:37,022   copying and adjusting bin/subset-protein-database.py -> build/scripts-3.5
2021-07-11T13:15:37,026   copying and adjusting bin/summarize-fasta-bases.py -> build/scripts-3.5
2021-07-11T13:15:37,031   copying and adjusting bin/summarize-reads.py -> build/scripts-3.5
2021-07-11T13:15:37,036   copying and adjusting bin/translate.py -> build/scripts-3.5
2021-07-11T13:15:37,040   copying and adjusting bin/trim-primers.py -> build/scripts-3.5
2021-07-11T13:15:37,044   copying and adjusting bin/trim-reads.py -> build/scripts-3.5
2021-07-11T13:15:37,047   copying and adjusting bin/write-htcondor-job-spec.py -> build/scripts-3.5
2021-07-11T13:15:37,051   changing mode of build/scripts-3.5/aa-info.py from 644 to 755
2021-07-11T13:15:37,052   changing mode of build/scripts-3.5/aa-to-dna.py from 644 to 755
2021-07-11T13:15:37,053   changing mode of build/scripts-3.5/aa-to-properties.py from 644 to 755
2021-07-11T13:15:37,054   changing mode of build/scripts-3.5/adaptor-distances.py from 644 to 755
2021-07-11T13:15:37,054   changing mode of build/scripts-3.5/alignment-panel-civ.py from 644 to 755
2021-07-11T13:15:37,055   changing mode of build/scripts-3.5/alignments-per-read.py from 644 to 755
2021-07-11T13:15:37,056   changing mode of build/scripts-3.5/bit-score-to-e-value.py from 644 to 755
2021-07-11T13:15:37,056   changing mode of build/scripts-3.5/cat-json-blast-records.py from 644 to 755
2021-07-11T13:15:37,057   changing mode of build/scripts-3.5/check-fasta-json-blast-consistency.py from 644 to 755
2021-07-11T13:15:37,058   changing mode of build/scripts-3.5/codon-distance.py from 644 to 755
2021-07-11T13:15:37,059   changing mode of build/scripts-3.5/compare-consensuses.py from 644 to 755
2021-07-11T13:15:37,060   changing mode of build/scripts-3.5/compare-sequences.py from 644 to 755
2021-07-11T13:15:37,060   changing mode of build/scripts-3.5/convert-blast-xml-to-json.py from 644 to 755
2021-07-11T13:15:37,061   changing mode of build/scripts-3.5/convert-diamond-to-json.py from 644 to 755
2021-07-11T13:15:37,062   changing mode of build/scripts-3.5/convert-diamond-to-sam.py from 644 to 755
2021-07-11T13:15:37,063   changing mode of build/scripts-3.5/create-newick-relabeling-output.py from 644 to 755
2021-07-11T13:15:37,063   changing mode of build/scripts-3.5/dark-matter-version.py from 644 to 755
2021-07-11T13:15:37,064   changing mode of build/scripts-3.5/describe-protein-database.py from 644 to 755
2021-07-11T13:15:37,065   changing mode of build/scripts-3.5/dna-to-aa.py from 644 to 755
2021-07-11T13:15:37,066   changing mode of build/scripts-3.5/e-value-to-bit-score.py from 644 to 755
2021-07-11T13:15:37,066   changing mode of build/scripts-3.5/extract-ORFs.py from 644 to 755
2021-07-11T13:15:37,067   changing mode of build/scripts-3.5/fasta-base-indices.py from 644 to 755
2021-07-11T13:15:37,068   changing mode of build/scripts-3.5/fasta-count.py from 644 to 755
2021-07-11T13:15:37,069   changing mode of build/scripts-3.5/fasta-identity-table.py from 644 to 755
2021-07-11T13:15:37,069   changing mode of build/scripts-3.5/fasta-ids.py from 644 to 755
2021-07-11T13:15:37,070   changing mode of build/scripts-3.5/fasta-join.py from 644 to 755
2021-07-11T13:15:37,071   changing mode of build/scripts-3.5/fasta-lengths.py from 644 to 755
2021-07-11T13:15:37,071   changing mode of build/scripts-3.5/fasta-sequences.py from 644 to 755
2021-07-11T13:15:37,072   changing mode of build/scripts-3.5/fasta-sort.py from 644 to 755
2021-07-11T13:15:37,073   changing mode of build/scripts-3.5/fasta-split-by-id.py from 644 to 755
2021-07-11T13:15:37,074   changing mode of build/scripts-3.5/fasta-split.py from 644 to 755
2021-07-11T13:15:37,074   changing mode of build/scripts-3.5/fasta-subset.py from 644 to 755
2021-07-11T13:15:37,075   changing mode of build/scripts-3.5/fasta-subtraction.py from 644 to 755
2021-07-11T13:15:37,076   changing mode of build/scripts-3.5/fasta-to-phylip.py from 644 to 755
2021-07-11T13:15:37,077   changing mode of build/scripts-3.5/fasta-variable-sites.py from 644 to 755
2021-07-11T13:15:37,077   changing mode of build/scripts-3.5/filter-fasta-by-complexity.py from 644 to 755
2021-07-11T13:15:37,078   changing mode of build/scripts-3.5/filter-fasta-by-taxonomy.py from 644 to 755
2021-07-11T13:15:37,079   changing mode of build/scripts-3.5/filter-fasta.py from 644 to 755
2021-07-11T13:15:37,080   changing mode of build/scripts-3.5/filter-hits-to-fasta.py from 644 to 755
2021-07-11T13:15:37,080   changing mode of build/scripts-3.5/filter-reads-alignments.py from 644 to 755
2021-07-11T13:15:37,081   changing mode of build/scripts-3.5/filter-sam.py from 644 to 755
2021-07-11T13:15:37,082   changing mode of build/scripts-3.5/find-hits.py from 644 to 755
2021-07-11T13:15:37,083   changing mode of build/scripts-3.5/format-fasta.py from 644 to 755
2021-07-11T13:15:37,083   changing mode of build/scripts-3.5/genome-protein-summary.py from 644 to 755
2021-07-11T13:15:37,084   changing mode of build/scripts-3.5/get-features.py from 644 to 755
2021-07-11T13:15:37,085   changing mode of build/scripts-3.5/get-hosts.py from 644 to 755
2021-07-11T13:15:37,085   changing mode of build/scripts-3.5/get-reads.py from 644 to 755
2021-07-11T13:15:37,086   changing mode of build/scripts-3.5/get-taxonomy.py from 644 to 755
2021-07-11T13:15:37,087   changing mode of build/scripts-3.5/graph-evalues.py from 644 to 755
2021-07-11T13:15:37,088   changing mode of build/scripts-3.5/local-align.py from 644 to 755
2021-07-11T13:15:37,089   changing mode of build/scripts-3.5/make-consensus.py from 644 to 755
2021-07-11T13:15:37,089   changing mode of build/scripts-3.5/make-fasta-database.py from 644 to 755
2021-07-11T13:15:37,090   changing mode of build/scripts-3.5/make-protein-database.py from 644 to 755
2021-07-11T13:15:37,091   changing mode of build/scripts-3.5/ncbi-fetch-id.py from 644 to 755
2021-07-11T13:15:37,092   changing mode of build/scripts-3.5/newick-to-ascii.py from 644 to 755
2021-07-11T13:15:37,092   changing mode of build/scripts-3.5/noninteractive-alignment-panel.py from 644 to 755
2021-07-11T13:15:37,093   changing mode of build/scripts-3.5/parse-genbank-flat-file.py from 644 to 755
2021-07-11T13:15:37,094   changing mode of build/scripts-3.5/position-summary.py from 644 to 755
2021-07-11T13:15:37,095   changing mode of build/scripts-3.5/print-blast-xml-for-derek.py from 644 to 755
2021-07-11T13:15:37,095   changing mode of build/scripts-3.5/print-blast-xml.py from 644 to 755
2021-07-11T13:15:37,096   changing mode of build/scripts-3.5/print-read-lengths.py from 644 to 755
2021-07-11T13:15:37,097   changing mode of build/scripts-3.5/proteins-to-pathogens.py from 644 to 755
2021-07-11T13:15:37,098   changing mode of build/scripts-3.5/proteins-to-pathogens-civ.py from 644 to 755
2021-07-11T13:15:37,098   changing mode of build/scripts-3.5/randomize-fasta.py from 644 to 755
2021-07-11T13:15:37,099   changing mode of build/scripts-3.5/read-blast-json.py from 644 to 755
2021-07-11T13:15:37,100   changing mode of build/scripts-3.5/read-blast-xml.py from 644 to 755
2021-07-11T13:15:37,101   changing mode of build/scripts-3.5/relabel-newick-tree.py from 644 to 755
2021-07-11T13:15:37,101   changing mode of build/scripts-3.5/run-bwa.py from 644 to 755
2021-07-11T13:15:37,102   changing mode of build/scripts-3.5/run-bowtie2.py from 644 to 755
2021-07-11T13:15:37,103   changing mode of build/scripts-3.5/sam-coverage.py from 644 to 755
2021-07-11T13:15:37,103   changing mode of build/scripts-3.5/sam-coverage-depth.py from 644 to 755
2021-07-11T13:15:37,104   changing mode of build/scripts-3.5/sam-to-fasta-alignment.py from 644 to 755
2021-07-11T13:15:37,105   changing mode of build/scripts-3.5/sam-reference-read-counts.py from 644 to 755
2021-07-11T13:15:37,106   changing mode of build/scripts-3.5/sam-references.py from 644 to 755
2021-07-11T13:15:37,106   changing mode of build/scripts-3.5/sff-to-fastq.py from 644 to 755
2021-07-11T13:15:37,107   changing mode of build/scripts-3.5/split-fasta-by-adaptors.py from 644 to 755
2021-07-11T13:15:37,108   changing mode of build/scripts-3.5/subset-protein-database.py from 644 to 755
2021-07-11T13:15:37,108   changing mode of build/scripts-3.5/summarize-fasta-bases.py from 644 to 755
2021-07-11T13:15:37,109   changing mode of build/scripts-3.5/summarize-reads.py from 644 to 755
2021-07-11T13:15:37,110   changing mode of build/scripts-3.5/translate.py from 644 to 755
2021-07-11T13:15:37,110   changing mode of build/scripts-3.5/trim-primers.py from 644 to 755
2021-07-11T13:15:37,111   changing mode of build/scripts-3.5/trim-reads.py from 644 to 755
2021-07-11T13:15:37,111   changing mode of build/scripts-3.5/write-htcondor-job-spec.py from 644 to 755
2021-07-11T13:15:37,112   installing to build/bdist.linux-armv7l/wheel
2021-07-11T13:15:37,113   running install
2021-07-11T13:15:37,115   running install_lib
2021-07-11T13:15:37,123   creating build/bdist.linux-armv7l
2021-07-11T13:15:37,124   creating build/bdist.linux-armv7l/wheel
2021-07-11T13:15:37,130   creating build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,132   copying build/lib/dark/hsp.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,137   copying build/lib/dark/html.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,143   copying build/lib/dark/dna.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,150   copying build/lib/dark/alignments.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,158   copying build/lib/dark/filter.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,166   copying build/lib/dark/ncbidb.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,171   copying build/lib/dark/genbank.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,177   copying build/lib/dark/fasta_ss.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,183   copying build/lib/dark/graphics.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,193   copying build/lib/dark/distance.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,198   copying build/lib/dark/reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,210   copying build/lib/dark/summarize.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,216   copying build/lib/dark/__init__.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,221   copying build/lib/dark/fastq.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,226   copying build/lib/dark/score.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,232   copying build/lib/dark/features.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,239   copying build/lib/dark/aligners.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,244   copying build/lib/dark/cigar.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,249   copying build/lib/dark/baseimage.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,255   copying build/lib/dark/btop.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,261   copying build/lib/dark/fasta.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,268   copying build/lib/dark/entrez.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,274   copying build/lib/dark/mutations.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,281   copying build/lib/dark/aa.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,291   copying build/lib/dark/local_align.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,298   copying build/lib/dark/taxonomy.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,306   copying build/lib/dark/sam.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,315   copying build/lib/dark/dimension.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,320   copying build/lib/dark/codonDistance.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,325   copying build/lib/dark/orfs.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,331   copying build/lib/dark/proteins.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,341   copying build/lib/dark/titles.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,349   copying build/lib/dark/consensus.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,355   copying build/lib/dark/analyze_reads.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,360   copying build/lib/dark/errors.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,367   creating build/bdist.linux-armv7l/wheel/dark/blast
2021-07-11T13:15:37,369   copying build/lib/dark/blast/hsp.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-07-11T13:15:37,376   copying build/lib/dark/blast/alignments.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-07-11T13:15:37,381   copying build/lib/dark/blast/__init__.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-07-11T13:15:37,384   copying build/lib/dark/blast/score.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-07-11T13:15:37,388   copying build/lib/dark/blast/records.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-07-11T13:15:37,394   copying build/lib/dark/blast/hacks.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-07-11T13:15:37,399   copying build/lib/dark/blast/params.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-07-11T13:15:37,404   copying build/lib/dark/blast/conversion.py -> build/bdist.linux-armv7l/wheel/dark/blast
2021-07-11T13:15:37,411   copying build/lib/dark/ipynb.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,416   copying build/lib/dark/process.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,423   copying build/lib/dark/intervals.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,429   copying build/lib/dark/utils.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,436   creating build/bdist.linux-armv7l/wheel/dark/diamond
2021-07-11T13:15:37,437   copying build/lib/dark/diamond/hsp.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-07-11T13:15:37,443   copying build/lib/dark/diamond/alignments.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-07-11T13:15:37,448   copying build/lib/dark/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-07-11T13:15:37,452   copying build/lib/dark/diamond/sam.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-07-11T13:15:37,459   copying build/lib/dark/diamond/conversion.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-07-11T13:15:37,467   copying build/lib/dark/diamond/run.py -> build/bdist.linux-armv7l/wheel/dark/diamond
2021-07-11T13:15:37,474   creating build/bdist.linux-armv7l/wheel/dark/civ
2021-07-11T13:15:37,476   copying build/lib/dark/civ/html.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-07-11T13:15:37,483   copying build/lib/dark/civ/graphics.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-07-11T13:15:37,491   copying build/lib/dark/civ/__init__.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-07-11T13:15:37,496   copying build/lib/dark/civ/proteins.py -> build/bdist.linux-armv7l/wheel/dark/civ
2021-07-11T13:15:37,512   copying build/lib/dark/database.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,517   copying build/lib/dark/genomes.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,523   copying build/lib/dark/bowtie2.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,530   copying build/lib/dark/fpcache.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,536   copying build/lib/dark/sequence.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,562   copying build/lib/dark/simplify.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,567   copying build/lib/dark/colors.py -> build/bdist.linux-armv7l/wheel/dark
2021-07-11T13:15:37,572   running install_egg_info
2021-07-11T13:15:37,617   running egg_info
2021-07-11T13:15:37,619   writing top-level names to dark_matter.egg-info/top_level.txt
2021-07-11T13:15:37,621   writing requirements to dark_matter.egg-info/requires.txt
2021-07-11T13:15:37,624   writing dependency_links to dark_matter.egg-info/dependency_links.txt
2021-07-11T13:15:37,626   writing dark_matter.egg-info/PKG-INFO
2021-07-11T13:15:37,666   reading manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-07-11T13:15:37,707   writing manifest file 'dark_matter.egg-info/SOURCES.txt'
2021-07-11T13:15:37,710   Copying dark_matter.egg-info to build/bdist.linux-armv7l/wheel/dark_matter-4.0.5-py3.5.egg-info
2021-07-11T13:15:37,735   running install_scripts
2021-07-11T13:15:37,874   creating build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data
2021-07-11T13:15:37,875   creating build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,877   copying build/scripts-3.5/run-bowtie2.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,883   copying build/scripts-3.5/fasta-lengths.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,887   copying build/scripts-3.5/codon-distance.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,893   copying build/scripts-3.5/make-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,900   copying build/scripts-3.5/print-read-lengths.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,905   copying build/scripts-3.5/convert-diamond-to-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,909   copying build/scripts-3.5/randomize-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,913   copying build/scripts-3.5/compare-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,918   copying build/scripts-3.5/translate.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,922   copying build/scripts-3.5/fasta-ids.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,926   copying build/scripts-3.5/summarize-fasta-bases.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,931   copying build/scripts-3.5/describe-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,936   copying build/scripts-3.5/fasta-split.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,942   copying build/scripts-3.5/convert-blast-xml-to-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,947   copying build/scripts-3.5/fasta-count.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,951   copying build/scripts-3.5/print-blast-xml-for-derek.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,955   copying build/scripts-3.5/convert-diamond-to-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,960   copying build/scripts-3.5/filter-hits-to-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,965   copying build/scripts-3.5/e-value-to-bit-score.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,969   copying build/scripts-3.5/dark-matter-version.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,974   copying build/scripts-3.5/fasta-subset.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,980   copying build/scripts-3.5/fasta-identity-table.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,987   copying build/scripts-3.5/sam-coverage.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,993   copying build/scripts-3.5/check-fasta-json-blast-consistency.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:37,999   copying build/scripts-3.5/get-taxonomy.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,004   copying build/scripts-3.5/fasta-diff.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,010   copying build/scripts-3.5/make-fasta-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,016   copying build/scripts-3.5/read-blast-json.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,022   copying build/scripts-3.5/alignment-panel-civ.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,029   copying build/scripts-3.5/bit-score-to-e-value.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,035   copying build/scripts-3.5/aa-to-dna.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,040   copying build/scripts-3.5/cat-json-blast-records.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,045   copying build/scripts-3.5/print-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,051   copying build/scripts-3.5/fasta-split-by-id.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,055   copying build/scripts-3.5/filter-sam.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,060   copying build/scripts-3.5/write-htcondor-job-spec.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,065   copying build/scripts-3.5/aa-info.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,069   copying build/scripts-3.5/fasta-subtraction.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,074   copying build/scripts-3.5/sam-coverage-depth.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,080   copying build/scripts-3.5/sam-to-fasta-alignment.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,085   copying build/scripts-3.5/filter-fasta-by-complexity.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,091   copying build/scripts-3.5/create-newick-relabeling-output.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,096   copying build/scripts-3.5/parse-genbank-flat-file.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,101   copying build/scripts-3.5/sam-references.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,107   copying build/scripts-3.5/newick-to-ascii.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,112   copying build/scripts-3.5/pre-commit.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,116   copying build/scripts-3.5/adaptor-distances.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,120   copying build/scripts-3.5/summarize-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,124   copying build/scripts-3.5/fasta-base-indices.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,128   copying build/scripts-3.5/proteins-to-pathogens-civ.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,135   copying build/scripts-3.5/filter-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,140   copying build/scripts-3.5/get-features.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,146   copying build/scripts-3.5/dna-to-aa.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,151   copying build/scripts-3.5/sam-reference-read-counts.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,157   copying build/scripts-3.5/convert-sam-to-fastq.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,162   copying build/scripts-3.5/format-fasta.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,168   copying build/scripts-3.5/relabel-newick-tree.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,173   copying build/scripts-3.5/extract-ORFs.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,177   copying build/scripts-3.5/ncbi-fetch-id.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,181   copying build/scripts-3.5/proteins-to-pathogens.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,186   copying build/scripts-3.5/genome-protein-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,192   copying build/scripts-3.5/make-consensus.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,198   copying build/scripts-3.5/fasta-sort.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,204   copying build/scripts-3.5/find-hits.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,209   copying build/scripts-3.5/trim-primers.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,215   copying build/scripts-3.5/run-bwa.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,220   copying build/scripts-3.5/fasta-to-phylip.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,226   copying build/scripts-3.5/sff-to-fastq.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,231   copying build/scripts-3.5/subset-protein-database.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,235   copying build/scripts-3.5/alignments-per-read.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,239   copying build/scripts-3.5/fasta-join.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,243   copying build/scripts-3.5/graph-evalues.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,247   copying build/scripts-3.5/position-summary.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,251   copying build/scripts-3.5/noninteractive-alignment-panel.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,258   copying build/scripts-3.5/filter-reads-alignments.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,265   copying build/scripts-3.5/trim-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,270   copying build/scripts-3.5/local-align.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,275   copying build/scripts-3.5/fasta-sequences.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,281   copying build/scripts-3.5/split-fasta-by-adaptors.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,287   copying build/scripts-3.5/aa-to-properties.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,292   copying build/scripts-3.5/compare-consensuses.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,298   copying build/scripts-3.5/get-hosts.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,302   copying build/scripts-3.5/read-blast-xml.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,305   copying build/scripts-3.5/download-genbank.sh -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,310   copying build/scripts-3.5/filter-fasta-by-taxonomy.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,315   copying build/scripts-3.5/get-reads.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,321   copying build/scripts-3.5/fasta-variable-sites.py -> build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts
2021-07-11T13:15:38,326   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts/run-bowtie2.py to 755
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2021-07-11T13:15:38,388   changing mode of build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.data/scripts/fasta-variable-sites.py to 755
2021-07-11T13:15:38,477   creating build/bdist.linux-armv7l/wheel/dark_matter-4.0.5.dist-info/WHEEL
2021-07-11T13:15:39,399   Building wheel for dark-matter (setup.py): finished with status 'done'
2021-07-11T13:15:39,409   Created wheel for dark-matter: filename=dark_matter-4.0.5-py3-none-any.whl size=319387 sha256=6f10772923cac4575fdf1db6ae35ce0374f64908bd6c60186ecfc2d9f0c40b79
2021-07-11T13:15:39,410   Stored in directory: /tmp/pip-ephem-wheel-cache-aod6b772/wheels/58/ac/c8/904ade85e3ce0a1787a860022454ce8847d20930a14edef82a
2021-07-11T13:15:39,441 Successfully built dark-matter
2021-07-11T13:15:39,500 Removed build tracker: '/tmp/pip-req-tracker-zzdzo6ud'