2021-07-11T16:13:14,493 Created temporary directory: /tmp/pip-ephem-wheel-cache-vq7jflwk 2021-07-11T16:13:14,496 Created temporary directory: /tmp/pip-req-tracker-vym7108s 2021-07-11T16:13:14,496 Initialized build tracking at /tmp/pip-req-tracker-vym7108s 2021-07-11T16:13:14,497 Created build tracker: /tmp/pip-req-tracker-vym7108s 2021-07-11T16:13:14,497 Entered build tracker: /tmp/pip-req-tracker-vym7108s 2021-07-11T16:13:14,497 Created temporary directory: /tmp/pip-wheel-hkoxztrt 2021-07-11T16:13:14,534 1 location(s) to search for versions of moira: 2021-07-11T16:13:14,534 * https://pypi.org/simple/moira/ 2021-07-11T16:13:14,534 Fetching project page and analyzing links: https://pypi.org/simple/moira/ 2021-07-11T16:13:14,535 Getting page https://pypi.org/simple/moira/ 2021-07-11T16:13:14,536 Found index url https://pypi.org/simple 2021-07-11T16:13:14,731 Found link https://files.pythonhosted.org/packages/50/c8/214268f5af1be0fadd0b993d96f3b3f5def49c1c9a693a695ab688bcb45c/moira-v1.0.0.tar.gz#sha256=cd1e465608b5d346f1a8b204fd9bb8c1634bf3db9ad3adc89ddafe3c569feb37 (from https://pypi.org/simple/moira/), version: v1.0.0 2021-07-11T16:13:14,732 Found link https://files.pythonhosted.org/packages/94/d3/a532237a3588536bb514272150200dd1e107b138813cfa2cd1bd8ec66876/moira-v1.0.1.tar.gz#sha256=d0b617e57cdea9013dc09b08ab62977cac3ae4268f40dfca663460903f179bd8 (from https://pypi.org/simple/moira/), version: v1.0.1 2021-07-11T16:13:14,733 Found link https://files.pythonhosted.org/packages/92/f5/5af7667b9d4930d27b24597643d88b8c76ce715351ee59be3d1d128cf0ed/moira-v1.0.2b.tar.gz#sha256=c25307bfd838eea95d74f16d4a270be8c63b477b72957123a460b7b79088f34a (from https://pypi.org/simple/moira/), version: v1.0.2b 2021-07-11T16:13:14,733 Found link https://files.pythonhosted.org/packages/fd/42/e43dd8004e8330c625482ac2563222b7e780dd9c951543b7e0d9e20d5482/moira-v1.0.2.tar.gz#sha256=210485455aba232fc7625974ce026ae00e864c4a746739adf24701219f36730d (from https://pypi.org/simple/moira/), version: v1.0.2 2021-07-11T16:13:14,734 Found link https://files.pythonhosted.org/packages/45/82/2488293a6de58d96101ed49993a83cef82ed27b8b94683f0b48b3053d03c/moira-v1.1.0.tar.gz#sha256=284d89790de1de877ef78ab6a3604d57cf3a6c16a8132354986dfa81c38184ca (from https://pypi.org/simple/moira/), version: v1.1.0 2021-07-11T16:13:14,734 Found link https://files.pythonhosted.org/packages/7e/70/3f9ca73321fd8e7403a4673d2f66ce4a31cdc5007b6cf261a2767218dd8c/moira-v1.2.0.tar.gz#sha256=a47396bc7ea1fcda373613a773b8aeacb8f0db55d87a4302ead78f72755fb73d (from https://pypi.org/simple/moira/), version: v1.2.0 2021-07-11T16:13:14,735 Found link https://files.pythonhosted.org/packages/51/3b/500c09bd64d7dcf6e50516e5f91e9b121a4bd0dfbce255c066f77bf7d5de/moira-v1.2.1.tar.gz#sha256=404d6557cfbcaca85b5e6c8d0c2df1094d4bf7f69e9976c5bfb7625d1ad518d1 (from https://pypi.org/simple/moira/), version: v1.2.1 2021-07-11T16:13:14,736 Found link https://files.pythonhosted.org/packages/60/c5/d34cb2fdc1304e5bcd74488164543d51788f9d43a4fb6db89c4dd7397ab5/moira-v1.3.0.tar.gz#sha256=77f68974a17d928449055696632ced9ac56530bcb5abaddd4df88e445d6f497f (from https://pypi.org/simple/moira/), version: v1.3.0 2021-07-11T16:13:14,736 Found link https://files.pythonhosted.org/packages/2d/b0/6e752f6fd0423ed624387c94d5fcabaa6eef234b3cbd12d0db607af477bf/moira-v1.3.2.tar.gz#sha256=6b00b7d0e0e37724fc23ed03bf1ec3d5d2fcf7ec51a769967f729d68b014e00c (from https://pypi.org/simple/moira/), version: v1.3.2 2021-07-11T16:13:14,737 Skipping link: not a file: https://pypi.org/simple/moira/ 2021-07-11T16:13:14,760 Given no hashes to check 1 links for project 'moira': discarding no candidates 2021-07-11T16:13:14,778 Collecting moira==v1.3.0 2021-07-11T16:13:14,780 Created temporary directory: /tmp/pip-unpack-ycv88fqn 2021-07-11T16:13:15,020 Downloading moira-v1.3.0.tar.gz (676 kB) 2021-07-11T16:13:15,310 Added moira==v1.3.0 from https://files.pythonhosted.org/packages/60/c5/d34cb2fdc1304e5bcd74488164543d51788f9d43a4fb6db89c4dd7397ab5/moira-v1.3.0.tar.gz#sha256=77f68974a17d928449055696632ced9ac56530bcb5abaddd4df88e445d6f497f to build tracker '/tmp/pip-req-tracker-vym7108s' 2021-07-11T16:13:15,311 Running setup.py (path:/tmp/pip-wheel-hkoxztrt/moira_4388e07478e941e9bf824512a7319d28/setup.py) egg_info for package moira 2021-07-11T16:13:15,312 Created temporary directory: /tmp/pip-pip-egg-info-03engybj 2021-07-11T16:13:15,312 Running command python setup.py egg_info 2021-07-11T16:13:16,099 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.3.0' to '1.3.0' 2021-07-11T16:13:16,100 warnings.warn(tmpl.format(**locals())) 2021-07-11T16:13:16,102 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-11T16:13:16,102 warnings.warn( 2021-07-11T16:13:16,120 running egg_info 2021-07-11T16:13:16,122 creating /tmp/pip-pip-egg-info-03engybj/moira.egg-info 2021-07-11T16:13:16,123 writing /tmp/pip-pip-egg-info-03engybj/moira.egg-info/PKG-INFO 2021-07-11T16:13:16,126 writing dependency_links to /tmp/pip-pip-egg-info-03engybj/moira.egg-info/dependency_links.txt 2021-07-11T16:13:16,128 writing top-level names to /tmp/pip-pip-egg-info-03engybj/moira.egg-info/top_level.txt 2021-07-11T16:13:16,130 writing manifest file '/tmp/pip-pip-egg-info-03engybj/moira.egg-info/SOURCES.txt' 2021-07-11T16:13:16,502 reading manifest file '/tmp/pip-pip-egg-info-03engybj/moira.egg-info/SOURCES.txt' 2021-07-11T16:13:16,503 reading manifest template 'MANIFEST.in' 2021-07-11T16:13:16,508 adding license file 'LICENSE' 2021-07-11T16:13:16,513 writing manifest file '/tmp/pip-pip-egg-info-03engybj/moira.egg-info/SOURCES.txt' 2021-07-11T16:13:16,599 Source in /tmp/pip-wheel-hkoxztrt/moira_4388e07478e941e9bf824512a7319d28 has version 1.3.0, which satisfies requirement moira==v1.3.0 from https://files.pythonhosted.org/packages/60/c5/d34cb2fdc1304e5bcd74488164543d51788f9d43a4fb6db89c4dd7397ab5/moira-v1.3.0.tar.gz#sha256=77f68974a17d928449055696632ced9ac56530bcb5abaddd4df88e445d6f497f 2021-07-11T16:13:16,600 Removed moira==v1.3.0 from https://files.pythonhosted.org/packages/60/c5/d34cb2fdc1304e5bcd74488164543d51788f9d43a4fb6db89c4dd7397ab5/moira-v1.3.0.tar.gz#sha256=77f68974a17d928449055696632ced9ac56530bcb5abaddd4df88e445d6f497f from build tracker '/tmp/pip-req-tracker-vym7108s' 2021-07-11T16:13:16,605 Created temporary directory: /tmp/pip-unpack-r1t4v1ai 2021-07-11T16:13:16,605 Building wheels for collected packages: moira 2021-07-11T16:13:16,609 Created temporary directory: /tmp/pip-wheel-v8gzx0tq 2021-07-11T16:13:16,610 Building wheel for moira (setup.py): started 2021-07-11T16:13:16,610 Destination directory: /tmp/pip-wheel-v8gzx0tq 2021-07-11T16:13:16,610 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hkoxztrt/moira_4388e07478e941e9bf824512a7319d28/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hkoxztrt/moira_4388e07478e941e9bf824512a7319d28/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-v8gzx0tq 2021-07-11T16:13:17,401 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.3.0' to '1.3.0' 2021-07-11T16:13:17,402 warnings.warn(tmpl.format(**locals())) 2021-07-11T16:13:17,404 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-11T16:13:17,404 warnings.warn( 2021-07-11T16:13:17,445 running bdist_wheel 2021-07-11T16:13:17,606 running build 2021-07-11T16:13:17,607 running build_py 2021-07-11T16:13:17,746 creating build 2021-07-11T16:13:17,747 creating build/lib.linux-armv7l-3.9 2021-07-11T16:13:17,747 creating build/lib.linux-armv7l-3.9/moira 2021-07-11T16:13:17,748 copying moira/moira.py -> build/lib.linux-armv7l-3.9/moira 2021-07-11T16:13:17,753 copying moira/__init__.py -> build/lib.linux-armv7l-3.9/moira 2021-07-11T16:13:17,755 running build_ext 2021-07-11T16:13:17,760 building 'bernoulli' extension 2021-07-11T16:13:17,761 creating build/temp.linux-armv7l-3.9 2021-07-11T16:13:17,761 creating build/temp.linux-armv7l-3.9/moira 2021-07-11T16:13:17,762 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c moira/bernoullimodule.c -o build/temp.linux-armv7l-3.9/moira/bernoullimodule.o 2021-07-11T16:13:18,158 moira/bernoullimodule.c: In function ‘calculate_errors_PB’: 2021-07-11T16:13:18,159 moira/bernoullimodule.c:86:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-11T16:13:18,159 86 | if (contig_quals_size != strlen(contig)) 2021-07-11T16:13:18,159 | ^~ 2021-07-11T16:13:18,165 moira/bernoullimodule.c:97:27: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration] 2021-07-11T16:13:18,165 97 | contig_quals [i] = (int)PyInt_AsLong(intObj); //Since python integers are actually implemented as C long integers. 2021-07-11T16:13:18,165 | ^~~~~~~~~~~~ 2021-07-11T16:13:18,165 | PyLong_AsLong 2021-07-11T16:13:18,173 moira/bernoullimodule.c: In function ‘initbernoulli’: 2021-07-11T16:13:18,173 moira/bernoullimodule.c:124:9: warning: implicit declaration of function ‘Py_InitModule’ [-Wimplicit-function-declaration] 2021-07-11T16:13:18,173 124 | (void) Py_InitModule("bernoulli", module_methods); 2021-07-11T16:13:18,173 | ^~~~~~~~~~~~~ 2021-07-11T16:13:18,176 moira/bernoullimodule.c: In function ‘test’: 2021-07-11T16:13:18,176 moira/bernoullimodule.c:212:6: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-11T16:13:18,176 212 | int j; 2021-07-11T16:13:18,176 | ^ 2021-07-11T16:13:18,180 moira/bernoullimodule.c: In function ‘initbernoulli’: 2021-07-11T16:13:18,180 moira/bernoullimodule.c:125:1: warning: control reaches end of non-void function [-Wreturn-type] 2021-07-11T16:13:18,180 125 | } 2021-07-11T16:13:18,180 | ^ 2021-07-11T16:13:18,183 At top level: 2021-07-11T16:13:18,184 moira/bernoullimodule.c:55:13: warning: ‘module_docstring’ defined but not used [-Wunused-variable] 2021-07-11T16:13:18,184 55 | static char module_docstring[] = "This module provides an interface for calculating the expected errors of a given sequence using a sum of Bernoulli random variables."; 2021-07-11T16:13:18,184 | ^~~~~~~~~~~~~~~~ 2021-07-11T16:13:18,388 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/moira/bernoullimodule.o -o build/lib.linux-armv7l-3.9/bernoulli.cpython-39-arm-linux-gnueabihf.so 2021-07-11T16:13:18,496 building 'nw_align' extension 2021-07-11T16:13:18,496 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c moira/nw_align.c -o build/temp.linux-armv7l-3.9/moira/nw_align.o 2021-07-11T16:13:18,902 moira/nw_align.c: In function ‘__pyx_f_5moira_8nw_align_nw_overlap’: 2021-07-11T16:13:18,903 moira/nw_align.c:2898:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-11T16:13:18,904 2898 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-11T16:13:18,904 | ^ 2021-07-11T16:13:18,906 moira/nw_align.c:2969:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-11T16:13:18,906 2969 | for (__pyx_v_j = 0; __pyx_v_j < __pyx_t_1; __pyx_v_j++) { 2021-07-11T16:13:18,906 | ^ 2021-07-11T16:13:18,911 moira/nw_align.c:3106:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-11T16:13:18,911 3106 | for (__pyx_t_14 = (__pyx_t_13 - 1); __pyx_t_14 > __pyx_t_1; __pyx_t_14-=1) { 2021-07-11T16:13:18,911 | ^ 2021-07-11T16:13:18,914 moira/nw_align.c:3169:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-11T16:13:18,915 3169 | for (__pyx_t_14 = (__pyx_t_13 - 1); __pyx_t_14 > __pyx_t_1; __pyx_t_14-=1) { 2021-07-11T16:13:18,915 | ^ 2021-07-11T16:13:18,917 moira/nw_align.c:2836:7: warning: variable ‘__pyx_t_11’ set but not used [-Wunused-but-set-variable] 2021-07-11T16:13:18,917 2836 | int __pyx_t_11; 2021-07-11T16:13:18,917 | ^~~~~~~~~~ 2021-07-11T16:13:19,064 moira/nw_align.c: In function ‘PyInit_nw_align’: 2021-07-11T16:13:19,072 moira/nw_align.c:14859:25: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-11T16:13:19,072 14859 | __pyx_type___pyx_array.tp_print = 0; 2021-07-11T16:13:19,072 | ^ 2021-07-11T16:13:19,080 moira/nw_align.c:14862:31: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-11T16:13:19,080 14862 | __pyx_type___pyx_MemviewEnum.tp_print = 0; 2021-07-11T16:13:19,080 | ^ 2021-07-11T16:13:19,088 moira/nw_align.c:14873:30: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-11T16:13:19,088 14873 | __pyx_type___pyx_memoryview.tp_print = 0; 2021-07-11T16:13:19,088 | ^ 2021-07-11T16:13:19,096 moira/nw_align.c:14882:35: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-11T16:13:19,096 14882 | __pyx_type___pyx_memoryviewslice.tp_print = 0; 2021-07-11T16:13:19,096 | ^ 2021-07-11T16:13:19,223 moira/nw_align.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-11T16:13:19,231 moira/nw_align.c:16016:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,231 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,231 | ^ 2021-07-11T16:13:19,232 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,232 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,232 from moira/nw_align.c:16: 2021-07-11T16:13:19,232 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T16:13:19,233 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T16:13:19,233 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,242 moira/nw_align.c:16016:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,242 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,243 | ^ 2021-07-11T16:13:19,243 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,243 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,243 from moira/nw_align.c:16: 2021-07-11T16:13:19,243 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-11T16:13:19,243 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-11T16:13:19,243 | ^~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,253 moira/nw_align.c:16016:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,253 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,253 | ^ 2021-07-11T16:13:19,253 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,254 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,254 from moira/nw_align.c:16: 2021-07-11T16:13:19,254 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T16:13:19,254 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T16:13:19,254 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,263 moira/nw_align.c:16016:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,264 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,264 | ^ 2021-07-11T16:13:19,264 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,264 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,264 from moira/nw_align.c:16: 2021-07-11T16:13:19,264 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T16:13:19,264 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T16:13:19,264 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,273 moira/nw_align.c:16016:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,273 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,273 | ^ 2021-07-11T16:13:19,273 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,273 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,273 from moira/nw_align.c:16: 2021-07-11T16:13:19,273 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-11T16:13:19,274 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-11T16:13:19,274 | ^~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,282 moira/nw_align.c:16016:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,283 16016 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,283 | ^ 2021-07-11T16:13:19,283 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,283 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,283 from moira/nw_align.c:16: 2021-07-11T16:13:19,283 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T16:13:19,283 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T16:13:19,284 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,295 moira/nw_align.c:16032:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,295 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,295 | ^ 2021-07-11T16:13:19,295 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,295 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,295 from moira/nw_align.c:16: 2021-07-11T16:13:19,296 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T16:13:19,296 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T16:13:19,296 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,304 moira/nw_align.c:16032:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,304 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,304 | ^ 2021-07-11T16:13:19,305 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,305 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,305 from moira/nw_align.c:16: 2021-07-11T16:13:19,305 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-11T16:13:19,305 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-11T16:13:19,305 | ^~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,313 moira/nw_align.c:16032:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,314 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,314 | ^ 2021-07-11T16:13:19,314 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,314 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,314 from moira/nw_align.c:16: 2021-07-11T16:13:19,314 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T16:13:19,314 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T16:13:19,314 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,323 moira/nw_align.c:16032:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,323 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,323 | ^ 2021-07-11T16:13:19,323 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,323 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,324 from moira/nw_align.c:16: 2021-07-11T16:13:19,324 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T16:13:19,324 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T16:13:19,324 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,332 moira/nw_align.c:16032:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,332 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,332 | ^ 2021-07-11T16:13:19,333 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,333 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,333 from moira/nw_align.c:16: 2021-07-11T16:13:19,333 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-11T16:13:19,333 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-11T16:13:19,333 | ^~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,341 moira/nw_align.c:16032:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,342 16032 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T16:13:19,342 | ^ 2021-07-11T16:13:19,342 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,342 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,342 from moira/nw_align.c:16: 2021-07-11T16:13:19,342 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T16:13:19,342 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T16:13:19,343 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,411 moira/nw_align.c: In function ‘__Pyx_decode_c_string’: 2021-07-11T16:13:19,419 moira/nw_align.c:16449:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-11T16:13:19,419 16449 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-11T16:13:19,419 | ^~~~~~ 2021-07-11T16:13:19,420 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T16:13:19,420 from /usr/include/python3.9/Python.h:97, 2021-07-11T16:13:19,420 from moira/nw_align.c:16: 2021-07-11T16:13:19,420 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-11T16:13:19,420 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-11T16:13:19,420 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-11T16:13:19,427 moira/nw_align.c: In function ‘__Pyx_ExceptionSave’: 2021-07-11T16:13:19,441 moira/nw_align.c:16488:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-11T16:13:19,441 16488 | *type = tstate->exc_type; 2021-07-11T16:13:19,441 | ^~~~~~~~ 2021-07-11T16:13:19,441 | curexc_type 2021-07-11T16:13:19,455 moira/nw_align.c:16489:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-11T16:13:19,455 16489 | *value = tstate->exc_value; 2021-07-11T16:13:19,455 | ^~~~~~~~~ 2021-07-11T16:13:19,455 | curexc_value 2021-07-11T16:13:19,469 moira/nw_align.c:16490:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-11T16:13:19,469 16490 | *tb = tstate->exc_traceback; 2021-07-11T16:13:19,470 | ^~~~~~~~~~~~~ 2021-07-11T16:13:19,470 | curexc_traceback 2021-07-11T16:13:19,470 moira/nw_align.c: In function ‘__Pyx_ExceptionReset’: 2021-07-11T16:13:19,484 moira/nw_align.c:16502:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-11T16:13:19,484 16502 | tmp_type = tstate->exc_type; 2021-07-11T16:13:19,484 | ^~~~~~~~ 2021-07-11T16:13:19,484 | curexc_type 2021-07-11T16:13:19,498 moira/nw_align.c:16503:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-11T16:13:19,498 16503 | tmp_value = tstate->exc_value; 2021-07-11T16:13:19,498 | ^~~~~~~~~ 2021-07-11T16:13:19,498 | curexc_value 2021-07-11T16:13:19,512 moira/nw_align.c:16504:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-11T16:13:19,512 16504 | tmp_tb = tstate->exc_traceback; 2021-07-11T16:13:19,513 | ^~~~~~~~~~~~~ 2021-07-11T16:13:19,513 | curexc_traceback 2021-07-11T16:13:19,526 moira/nw_align.c:16505:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-11T16:13:19,527 16505 | tstate->exc_type = type; 2021-07-11T16:13:19,527 | ^~~~~~~~ 2021-07-11T16:13:19,527 | curexc_type 2021-07-11T16:13:19,541 moira/nw_align.c:16506:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-11T16:13:19,541 16506 | tstate->exc_value = value; 2021-07-11T16:13:19,541 | ^~~~~~~~~ 2021-07-11T16:13:19,541 | curexc_value 2021-07-11T16:13:19,555 moira/nw_align.c:16507:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-11T16:13:19,555 16507 | tstate->exc_traceback = tb; 2021-07-11T16:13:19,555 | ^~~~~~~~~~~~~ 2021-07-11T16:13:19,555 | curexc_traceback 2021-07-11T16:13:19,559 moira/nw_align.c: In function ‘__Pyx_GetException’: 2021-07-11T16:13:19,573 moira/nw_align.c:16550:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-11T16:13:19,573 16550 | tmp_type = tstate->exc_type; 2021-07-11T16:13:19,573 | ^~~~~~~~ 2021-07-11T16:13:19,574 | curexc_type 2021-07-11T16:13:19,587 moira/nw_align.c:16551:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-11T16:13:19,588 16551 | tmp_value = tstate->exc_value; 2021-07-11T16:13:19,588 | ^~~~~~~~~ 2021-07-11T16:13:19,588 | curexc_value 2021-07-11T16:13:19,602 moira/nw_align.c:16552:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-11T16:13:19,602 16552 | tmp_tb = tstate->exc_traceback; 2021-07-11T16:13:19,602 | ^~~~~~~~~~~~~ 2021-07-11T16:13:19,602 | curexc_traceback 2021-07-11T16:13:19,616 moira/nw_align.c:16553:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-11T16:13:19,616 16553 | tstate->exc_type = local_type; 2021-07-11T16:13:19,617 | ^~~~~~~~ 2021-07-11T16:13:19,617 | curexc_type 2021-07-11T16:13:19,630 moira/nw_align.c:16554:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-11T16:13:19,630 16554 | tstate->exc_value = local_value; 2021-07-11T16:13:19,631 | ^~~~~~~~~ 2021-07-11T16:13:19,631 | curexc_value 2021-07-11T16:13:19,645 moira/nw_align.c:16555:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-11T16:13:19,645 16555 | tstate->exc_traceback = local_tb; 2021-07-11T16:13:19,645 | ^~~~~~~~~~~~~ 2021-07-11T16:13:19,645 | curexc_traceback 2021-07-11T16:13:19,645 moira/nw_align.c: In function ‘__Pyx_ExceptionSwap’: 2021-07-11T16:13:19,659 moira/nw_align.c:16577:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-11T16:13:19,659 16577 | tmp_type = tstate->exc_type; 2021-07-11T16:13:19,660 | ^~~~~~~~ 2021-07-11T16:13:19,660 | curexc_type 2021-07-11T16:13:19,674 moira/nw_align.c:16578:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-11T16:13:19,674 16578 | tmp_value = tstate->exc_value; 2021-07-11T16:13:19,674 | ^~~~~~~~~ 2021-07-11T16:13:19,674 | curexc_value 2021-07-11T16:13:19,688 moira/nw_align.c:16579:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-11T16:13:19,688 16579 | tmp_tb = tstate->exc_traceback; 2021-07-11T16:13:19,688 | ^~~~~~~~~~~~~ 2021-07-11T16:13:19,688 | curexc_traceback 2021-07-11T16:13:19,702 moira/nw_align.c:16580:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-11T16:13:19,702 16580 | tstate->exc_type = *type; 2021-07-11T16:13:19,702 | ^~~~~~~~ 2021-07-11T16:13:19,703 | curexc_type 2021-07-11T16:13:19,716 moira/nw_align.c:16581:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-11T16:13:19,717 16581 | tstate->exc_value = *value; 2021-07-11T16:13:19,717 | ^~~~~~~~~ 2021-07-11T16:13:19,717 | curexc_value 2021-07-11T16:13:19,731 moira/nw_align.c:16582:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-11T16:13:19,731 16582 | tstate->exc_traceback = *tb; 2021-07-11T16:13:19,731 | ^~~~~~~~~~~~~ 2021-07-11T16:13:19,731 | curexc_traceback 2021-07-11T16:13:20,000 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-11T16:13:20,081 Building wheel for moira (setup.py): finished with status 'error' 2021-07-11T16:13:20,082 ERROR: Failed building wheel for moira 2021-07-11T16:13:20,083 Running setup.py clean for moira 2021-07-11T16:13:20,083 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hkoxztrt/moira_4388e07478e941e9bf824512a7319d28/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hkoxztrt/moira_4388e07478e941e9bf824512a7319d28/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-11T16:13:20,873 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing 'v1.3.0' to '1.3.0' 2021-07-11T16:13:20,874 warnings.warn(tmpl.format(**locals())) 2021-07-11T16:13:20,876 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2021-07-11T16:13:20,876 warnings.warn( 2021-07-11T16:13:20,881 running clean 2021-07-11T16:13:20,884 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-11T16:13:20,886 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-11T16:13:20,888 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-11T16:13:20,889 'build/scripts-3.9' does not exist -- can't clean it 2021-07-11T16:13:20,889 removing 'build' 2021-07-11T16:13:20,945 Failed to build moira 2021-07-11T16:13:20,945 ERROR: Failed to build one or more wheels 2021-07-11T16:13:20,946 Exception information: 2021-07-11T16:13:20,946 Traceback (most recent call last): 2021-07-11T16:13:20,946 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-11T16:13:20,946 status = self.run(options, args) 2021-07-11T16:13:20,946 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-11T16:13:20,946 return func(self, options, args) 2021-07-11T16:13:20,946 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-11T16:13:20,946 raise CommandError( 2021-07-11T16:13:20,946 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-11T16:13:20,949 Removed build tracker: '/tmp/pip-req-tracker-vym7108s'