2021-07-11T18:07:31,900 Created temporary directory: /tmp/pip-ephem-wheel-cache-uy4418cf 2021-07-11T18:07:31,903 Created temporary directory: /tmp/pip-req-tracker-ottzox3_ 2021-07-11T18:07:31,903 Initialized build tracking at /tmp/pip-req-tracker-ottzox3_ 2021-07-11T18:07:31,904 Created build tracker: /tmp/pip-req-tracker-ottzox3_ 2021-07-11T18:07:31,904 Entered build tracker: /tmp/pip-req-tracker-ottzox3_ 2021-07-11T18:07:31,904 Created temporary directory: /tmp/pip-wheel-rkn0etiu 2021-07-11T18:07:31,935 1 location(s) to search for versions of msmtools: 2021-07-11T18:07:31,935 * https://pypi.org/simple/msmtools/ 2021-07-11T18:07:31,935 Fetching project page and analyzing links: https://pypi.org/simple/msmtools/ 2021-07-11T18:07:31,936 Getting page https://pypi.org/simple/msmtools/ 2021-07-11T18:07:31,937 Found index url https://pypi.org/simple 2021-07-11T18:07:32,122 Found link https://files.pythonhosted.org/packages/06/eb/7ea49c965c6d6cc5d49cf7619eb365b9f80f92d449fa2d83286d57c23b09/msmtools-1.0.tar.gz#sha256=cd2cfbb47327eb24d4855b7585868fbbc3be14c824a2eaa3fa0c2a7e76310595 (from https://pypi.org/simple/msmtools/), version: 1.0 2021-07-11T18:07:32,123 Found link https://files.pythonhosted.org/packages/c4/ca/50da8c42c7aad77f9d8f5c5cf1aa0f8812c01b78ea07c4719daca73a90fb/msmtools-1.0.1.tar.gz#sha256=b6704dea0bb816e3aca0be871f15199a18964a799854a000135ffe95a13ea0d6 (from https://pypi.org/simple/msmtools/), version: 1.0.1 2021-07-11T18:07:32,123 Found link https://files.pythonhosted.org/packages/f7/e7/8fad6dccdaf5c35379a3d670c5b17546fcf5e9b2c7feec293dec0e9fc935/msmtools-1.0.2.tar.gz#sha256=f5f9cb4a2b10f7d7f2d5b7cf520703011e6d6f7961a858c5a88b82f0ad2c494a (from https://pypi.org/simple/msmtools/), version: 1.0.2 2021-07-11T18:07:32,123 Found link https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 (from https://pypi.org/simple/msmtools/), version: 1.0.3 2021-07-11T18:07:32,124 Found link https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 (from https://pypi.org/simple/msmtools/), version: 1.0.4 2021-07-11T18:07:32,124 Found link https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 (from https://pypi.org/simple/msmtools/), version: 1.1 2021-07-11T18:07:32,124 Found link https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b (from https://pypi.org/simple/msmtools/), version: 1.1.1 2021-07-11T18:07:32,124 Found link https://files.pythonhosted.org/packages/d8/83/2de718bea8c6ffd64287549e1f443695c9c7eae576e4ec8b695748735bcc/msmtools-1.1.2.tar.gz#sha256=1ae40e839dff551575e38bb8c061073a2f1e69279e53ed62f66c88006a1f0a4f (from https://pypi.org/simple/msmtools/), version: 1.1.2 2021-07-11T18:07:32,125 Found link https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b (from https://pypi.org/simple/msmtools/), version: 1.1.3 2021-07-11T18:07:32,125 Found link https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 (from https://pypi.org/simple/msmtools/), version: 1.1.4 2021-07-11T18:07:32,125 Found link https://files.pythonhosted.org/packages/5e/a2/42d30177e9f8b9071a5cf17c6cd0a75b9b245d708fc626b015599308a898/msmtools-1.2.tar.gz#sha256=eb509f9b2bebd5a07896ec563b14df3ebee2b9871730f5ac87e1ab3179c8c6c4 (from https://pypi.org/simple/msmtools/), version: 1.2 2021-07-11T18:07:32,126 Found link https://files.pythonhosted.org/packages/c5/bb/79aa3617eed8eaea3c2639d172929079b680e1904d4e19b50d35612c5db3/msmtools-1.2.1.tar.gz#sha256=7282cec96360372e8440146dfe27848273bc3d83d18806ea56e3986a14d5bdec (from https://pypi.org/simple/msmtools/), version: 1.2.1 2021-07-11T18:07:32,126 Found link https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 (from https://pypi.org/simple/msmtools/), version: 1.2.2 2021-07-11T18:07:32,126 Found link https://files.pythonhosted.org/packages/53/84/416bd9c21c408ef59953804c1b4ec805950adfd89102c43c54685b6f3cdf/msmtools-1.2.3.tar.gz#sha256=3f3c39a4558887575dd2bfdb0711b6d073446cb0b8767eafda16bfe0b92409c9 (from https://pypi.org/simple/msmtools/), version: 1.2.3 2021-07-11T18:07:32,126 Found link https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b (from https://pypi.org/simple/msmtools/), version: 1.2.4 2021-07-11T18:07:32,127 Found link https://files.pythonhosted.org/packages/9e/95/ac5dfa19f13379490dbef764a994c6d564b32de2d68e712042af8ff84d2a/msmtools-1.2.5.tar.gz#sha256=e07b73ad9e4e8ef8aca82e6b5bb55f57f8400a65fb2fd656b521f72237a7310a (from https://pypi.org/simple/msmtools/), version: 1.2.5 2021-07-11T18:07:32,127 Found link https://files.pythonhosted.org/packages/e4/1f/366f5c37c1231f87b6789f904e4e68ae47b4b910119da9ec5905e9fa1387/msmtools-1.2.6.tar.gz#sha256=2bfa6c02fff9ed9433c90d7ddc7860a8e2cf881fc67ec1ea5ef93f34a7e03541 (from https://pypi.org/simple/msmtools/), version: 1.2.6 2021-07-11T18:07:32,127 Skipping link: not a file: https://pypi.org/simple/msmtools/ 2021-07-11T18:07:32,147 Given no hashes to check 1 links for project 'msmtools': discarding no candidates 2021-07-11T18:07:32,167 Collecting msmtools==1.1.3 2021-07-11T18:07:32,168 Created temporary directory: /tmp/pip-unpack-wkgc4sr4 2021-07-11T18:07:32,764 Downloading msmtools-1.1.3.tar.gz (661 kB) 2021-07-11T18:07:33,445 Added msmtools==1.1.3 from https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b to build tracker '/tmp/pip-req-tracker-ottzox3_' 2021-07-11T18:07:33,447 Running setup.py (path:/tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/setup.py) egg_info for package msmtools 2021-07-11T18:07:33,447 Created temporary directory: /tmp/pip-pip-egg-info-owus58oh 2021-07-11T18:07:33,448 Running command python setup.py egg_info 2021-07-11T18:07:34,742 running egg_info 2021-07-11T18:07:34,744 creating /tmp/pip-pip-egg-info-owus58oh/msmtools.egg-info 2021-07-11T18:07:34,746 writing /tmp/pip-pip-egg-info-owus58oh/msmtools.egg-info/PKG-INFO 2021-07-11T18:07:34,749 writing dependency_links to /tmp/pip-pip-egg-info-owus58oh/msmtools.egg-info/dependency_links.txt 2021-07-11T18:07:34,751 writing requirements to /tmp/pip-pip-egg-info-owus58oh/msmtools.egg-info/requires.txt 2021-07-11T18:07:34,966 creating /tmp/hasfunction-fyezxb_2/tmp 2021-07-11T18:07:34,967 creating /tmp/hasfunction-fyezxb_2/tmp/hasfunction-fyezxb_2 2021-07-11T18:07:34,967 cc -c /tmp/hasfunction-fyezxb_2/funcname.c -o /tmp/hasfunction-fyezxb_2/tmp/hasfunction-fyezxb_2/funcname.o 2021-07-11T18:07:35,059 cc /tmp/hasfunction-fyezxb_2/tmp/hasfunction-fyezxb_2/funcname.o -o /tmp/hasfunction-fyezxb_2/a.out 2021-07-11T18:07:35,175 creating /tmp/hasfunction-ot8hnrb9/tmp 2021-07-11T18:07:35,175 creating /tmp/hasfunction-ot8hnrb9/tmp/hasfunction-ot8hnrb9 2021-07-11T18:07:35,176 cc -c /tmp/hasfunction-ot8hnrb9/funcname.c -o /tmp/hasfunction-ot8hnrb9/tmp/hasfunction-ot8hnrb9/funcname.o 2021-07-11T18:07:35,267 cc /tmp/hasfunction-ot8hnrb9/tmp/hasfunction-ot8hnrb9/funcname.o -lgomp -o /tmp/hasfunction-ot8hnrb9/a.out 2021-07-11T18:07:36,370 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/msmtools/estimation/dense/mle_trev.pyx 2021-07-11T18:07:36,370 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T18:07:37,799 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-11T18:07:37,799 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T18:07:39,169 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/msmtools/estimation/dense/sampler_rev.pyx 2021-07-11T18:07:39,169 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T18:07:40,802 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/msmtools/estimation/dense/sampler_revpi.pyx 2021-07-11T18:07:40,802 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T18:07:42,634 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/msmtools/estimation/sparse/mle_trev.pyx 2021-07-11T18:07:42,634 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T18:07:44,133 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-11T18:07:44,133 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T18:07:45,528 Compiling msmtools/estimation/dense/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T18:07:45,528 Compiling msmtools/estimation/sparse/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T18:07:45,529 Compiling msmtools/estimation/dense/mle_trev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T18:07:45,529 Compiling msmtools/estimation/sparse/mle_trev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T18:07:45,529 Compiling msmtools/estimation/dense/sampler_rev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T18:07:45,529 Compiling msmtools/estimation/dense/sampler_revpi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T18:07:45,529 [1/6] Cythonizing msmtools/estimation/dense/mle_trev.pyx 2021-07-11T18:07:45,529 [2/6] Cythonizing msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-11T18:07:45,530 [3/6] Cythonizing msmtools/estimation/dense/sampler_rev.pyx 2021-07-11T18:07:45,530 [4/6] Cythonizing msmtools/estimation/dense/sampler_revpi.pyx 2021-07-11T18:07:45,530 [5/6] Cythonizing msmtools/estimation/sparse/mle_trev.pyx 2021-07-11T18:07:45,530 [6/6] Cythonizing msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-11T18:07:45,530 /tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/setup.py:155: UserWarning: enabled openmp 2021-07-11T18:07:45,531 warnings.warn('enabled openmp') 2021-07-11T18:07:45,531 writing top-level names to /tmp/pip-pip-egg-info-owus58oh/msmtools.egg-info/top_level.txt 2021-07-11T18:07:45,531 writing manifest file '/tmp/pip-pip-egg-info-owus58oh/msmtools.egg-info/SOURCES.txt' 2021-07-11T18:07:45,577 reading manifest file '/tmp/pip-pip-egg-info-owus58oh/msmtools.egg-info/SOURCES.txt' 2021-07-11T18:07:45,578 reading manifest template 'MANIFEST.in' 2021-07-11T18:07:45,683 warning: no files found matching 'tests/data/*' under directory 'msmtools' 2021-07-11T18:07:45,735 warning: no files found matching 'testfiles/' under directory 'msmtools' 2021-07-11T18:07:45,989 adding license file 'LICENSE.txt' 2021-07-11T18:07:45,999 writing manifest file '/tmp/pip-pip-egg-info-owus58oh/msmtools.egg-info/SOURCES.txt' 2021-07-11T18:07:46,225 Source in /tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704 has version 1.1.3, which satisfies requirement msmtools==1.1.3 from https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b 2021-07-11T18:07:46,226 Removed msmtools==1.1.3 from https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b from build tracker '/tmp/pip-req-tracker-ottzox3_' 2021-07-11T18:07:46,230 Created temporary directory: /tmp/pip-unpack-m0ydzhkh 2021-07-11T18:07:46,231 Building wheels for collected packages: msmtools 2021-07-11T18:07:46,235 Created temporary directory: /tmp/pip-wheel-5vr9k08y 2021-07-11T18:07:46,235 Building wheel for msmtools (setup.py): started 2021-07-11T18:07:46,236 Destination directory: /tmp/pip-wheel-5vr9k08y 2021-07-11T18:07:46,236 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-5vr9k08y 2021-07-11T18:07:47,477 running bdist_wheel 2021-07-11T18:07:47,669 creating /tmp/hasfunction-e0vem7cz/tmp 2021-07-11T18:07:47,670 creating /tmp/hasfunction-e0vem7cz/tmp/hasfunction-e0vem7cz 2021-07-11T18:07:47,670 cc -c /tmp/hasfunction-e0vem7cz/funcname.c -o /tmp/hasfunction-e0vem7cz/tmp/hasfunction-e0vem7cz/funcname.o 2021-07-11T18:07:47,753 cc /tmp/hasfunction-e0vem7cz/tmp/hasfunction-e0vem7cz/funcname.o -o /tmp/hasfunction-e0vem7cz/a.out 2021-07-11T18:07:47,867 creating /tmp/hasfunction-vggxg8uy/tmp 2021-07-11T18:07:47,868 creating /tmp/hasfunction-vggxg8uy/tmp/hasfunction-vggxg8uy 2021-07-11T18:07:47,868 cc -c /tmp/hasfunction-vggxg8uy/funcname.c -o /tmp/hasfunction-vggxg8uy/tmp/hasfunction-vggxg8uy/funcname.o 2021-07-11T18:07:47,953 cc /tmp/hasfunction-vggxg8uy/tmp/hasfunction-vggxg8uy/funcname.o -lgomp -o /tmp/hasfunction-vggxg8uy/a.out 2021-07-11T18:07:48,866 /tmp/pip-wheel-rkn0etiu/msmtools_bbbb808f8cba4ec5a6c1de9184cc4704/setup.py:155: UserWarning: enabled openmp 2021-07-11T18:07:48,866 warnings.warn('enabled openmp') 2021-07-11T18:07:48,870 running build 2021-07-11T18:07:48,870 running build_py 2021-07-11T18:07:48,876 creating build 2021-07-11T18:07:48,876 creating build/lib.linux-armv7l-3.9 2021-07-11T18:07:48,876 creating build/lib.linux-armv7l-3.9/msmtools 2021-07-11T18:07:48,878 copying msmtools/__init__.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-11T18:07:48,879 copying msmtools/_version.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-11T18:07:48,882 creating build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T18:07:48,882 copying msmtools/flux/api.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T18:07:48,885 copying msmtools/flux/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T18:07:48,887 copying msmtools/flux/reactive_flux_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T18:07:48,889 copying msmtools/flux/reactive_flux.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T18:07:48,893 creating build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-11T18:07:48,893 copying msmtools/estimation/api.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-11T18:07:48,897 copying msmtools/estimation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-11T18:07:48,900 creating build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-11T18:07:48,901 copying msmtools/dtraj/api.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-11T18:07:48,904 copying msmtools/dtraj/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-11T18:07:48,906 creating build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-11T18:07:48,907 copying msmtools/analysis/api.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-11T18:07:48,913 copying msmtools/analysis/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-11T18:07:48,916 creating build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-11T18:07:48,917 copying msmtools/generation/api.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-11T18:07:48,919 copying msmtools/generation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-11T18:07:48,922 creating build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T18:07:48,923 copying msmtools/util/types.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T18:07:48,926 copying msmtools/util/annotators.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T18:07:48,929 copying msmtools/util/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T18:07:48,931 copying msmtools/util/exceptions.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T18:07:48,933 copying msmtools/util/statistics.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T18:07:48,935 copying msmtools/util/numeric.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T18:07:48,938 creating build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T18:07:48,939 copying msmtools/flux/sparse/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T18:07:48,941 copying msmtools/flux/sparse/pathways_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T18:07:48,943 copying msmtools/flux/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T18:07:48,945 copying msmtools/flux/sparse/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T18:07:48,948 copying msmtools/flux/sparse/pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T18:07:48,951 creating build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-11T18:07:48,952 copying msmtools/flux/dense/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-11T18:07:48,955 copying msmtools/flux/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-11T18:07:48,957 copying msmtools/flux/dense/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-11T18:07:48,960 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,961 copying msmtools/estimation/sparse/connectivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,964 copying msmtools/estimation/sparse/prior_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,966 copying msmtools/estimation/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,968 copying msmtools/estimation/sparse/likelihood_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,970 copying msmtools/estimation/sparse/likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,972 copying msmtools/estimation/sparse/count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,974 copying msmtools/estimation/sparse/prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,976 copying msmtools/estimation/sparse/transition_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,977 copying msmtools/estimation/sparse/connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,980 copying msmtools/estimation/sparse/effective_counts.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,982 copying msmtools/estimation/sparse/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:48,985 creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:48,986 copying msmtools/estimation/dense/bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:48,988 copying msmtools/estimation/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:48,990 copying msmtools/estimation/dense/covariance.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:48,993 copying msmtools/estimation/dense/covariance_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:48,995 copying msmtools/estimation/dense/tmatrix_sampler.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:48,997 copying msmtools/estimation/dense/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:48,999 copying msmtools/estimation/dense/tmatrix_sampler_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:49,001 copying msmtools/estimation/dense/sampler_nrev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:49,004 creating build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,005 copying msmtools/analysis/sparse/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,008 copying msmtools/analysis/sparse/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,010 copying msmtools/analysis/sparse/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,012 copying msmtools/analysis/sparse/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,015 copying msmtools/analysis/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,016 copying msmtools/analysis/sparse/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,019 copying msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,021 copying msmtools/analysis/sparse/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,023 copying msmtools/analysis/sparse/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,025 copying msmtools/analysis/sparse/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,028 copying msmtools/analysis/sparse/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,030 copying msmtools/analysis/sparse/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,033 copying msmtools/analysis/sparse/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,036 copying msmtools/analysis/sparse/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,038 copying msmtools/analysis/sparse/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,040 copying msmtools/analysis/sparse/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T18:07:49,044 creating build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,045 copying msmtools/analysis/dense/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,048 copying msmtools/analysis/dense/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,050 copying msmtools/analysis/dense/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,052 copying msmtools/analysis/dense/sensitivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,054 copying msmtools/analysis/dense/hitting_probability.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,056 copying msmtools/analysis/dense/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,059 copying msmtools/analysis/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,061 copying msmtools/analysis/dense/pcca_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,063 copying msmtools/analysis/dense/pcca.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,066 copying msmtools/analysis/dense/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,068 copying msmtools/analysis/dense/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,070 copying msmtools/analysis/dense/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,072 copying msmtools/analysis/dense/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,075 copying msmtools/analysis/dense/hitting_probability_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,077 copying msmtools/analysis/dense/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,079 copying msmtools/analysis/dense/correlations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,082 copying msmtools/analysis/dense/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,084 copying msmtools/analysis/dense/correlations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,087 copying msmtools/analysis/dense/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,089 copying msmtools/analysis/dense/sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,092 copying msmtools/analysis/dense/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,095 copying msmtools/analysis/dense/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,097 copying msmtools/analysis/dense/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,099 copying msmtools/analysis/dense/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T18:07:49,102 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-11T18:07:49,103 copying msmtools/util/matrix/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-11T18:07:49,105 copying msmtools/util/matrix/matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-11T18:07:49,108 copying msmtools/util/matrix/matrix.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-11T18:07:49,115 creating build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,116 copying msmtools/analysis/tests/test_committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,119 copying msmtools/analysis/tests/P_rev_251x251.dat -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,156 copying msmtools/analysis/tests/test_assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,158 copying msmtools/analysis/tests/test_fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,161 copying msmtools/analysis/tests/test_decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,164 copying msmtools/analysis/tests/test_sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,166 copying msmtools/analysis/tests/test_mfpt.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,169 copying msmtools/analysis/tests/test_expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,171 copying msmtools/analysis/tests/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T18:07:49,174 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,175 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,178 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,180 copying msmtools/util/matrix/testfiles/matrix_complex.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,183 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,185 copying msmtools/util/matrix/testfiles/matrix_int.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,188 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,190 copying msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,193 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,196 copying msmtools/util/matrix/testfiles/matrix_complex.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,198 copying msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,200 copying msmtools/util/matrix/testfiles/matrix_int.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,202 copying msmtools/util/matrix/testfiles/matrix_float.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,205 copying msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,207 copying msmtools/util/matrix/testfiles/matrix_float.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,210 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T18:07:49,224 running build_ext 2021-07-11T18:07:49,229 building 'msmtools.estimation.dense.mle_trev_given_pi' extension 2021-07-11T18:07:49,229 creating build/temp.linux-armv7l-3.9 2021-07-11T18:07:49,230 creating build/temp.linux-armv7l-3.9/msmtools 2021-07-11T18:07:49,231 creating build/temp.linux-armv7l-3.9/msmtools/estimation 2021-07-11T18:07:49,231 creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T18:07:49,232 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o -fopenmp 2021-07-11T18:07:49,628 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -fopenmp 2021-07-11T18:07:50,043 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T18:07:50,043 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T18:07:50,043 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T18:07:50,044 from msmtools/estimation/dense/mle_trev_given_pi.c:638: 2021-07-11T18:07:50,044 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T18:07:50,044 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T18:07:50,044 | ^~~~~~~ 2021-07-11T18:07:53,018 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T18:07:53,158 building 'msmtools.estimation.sparse.mle_trev_given_pi' extension 2021-07-11T18:07:53,159 creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T18:07:53,160 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o -fopenmp 2021-07-11T18:07:53,521 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -fopenmp 2021-07-11T18:07:53,900 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T18:07:53,901 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T18:07:53,901 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T18:07:53,901 from msmtools/estimation/sparse/mle_trev_given_pi.c:639: 2021-07-11T18:07:53,901 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T18:07:53,901 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T18:07:53,902 | ^~~~~~~ 2021-07-11T18:07:58,162 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T18:07:58,297 building 'msmtools.estimation.dense.mle_trev' extension 2021-07-11T18:07:58,298 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o -fopenmp 2021-07-11T18:07:58,444 msmtools/estimation/dense/_mle_trev.c: In function ‘_mle_trev_dense’: 2021-07-11T18:07:58,445 msmtools/estimation/dense/_mle_trev.c:62:27: warning: unused variable ‘value’ [-Wunused-variable] 2021-07-11T18:07:58,445 62 | double rel_err, x_norm, value; 2021-07-11T18:07:58,445 | ^~~~~ 2021-07-11T18:07:58,666 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -fopenmp 2021-07-11T18:07:59,046 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T18:07:59,046 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T18:07:59,046 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T18:07:59,046 from msmtools/estimation/dense/mle_trev.c:638: 2021-07-11T18:07:59,046 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T18:07:59,047 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T18:07:59,047 | ^~~~~~~ 2021-07-11T18:08:02,732 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T18:08:02,863 building 'msmtools.estimation.sparse.mle_trev' extension 2021-07-11T18:08:02,864 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o -fopenmp 2021-07-11T18:08:03,249 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -fopenmp 2021-07-11T18:08:03,630 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T18:08:03,630 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T18:08:03,631 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T18:08:03,631 from msmtools/estimation/sparse/mle_trev.c:638: 2021-07-11T18:08:03,631 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T18:08:03,631 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T18:08:03,631 | ^~~~~~~ 2021-07-11T18:08:07,984 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T18:08:08,118 building 'msmtools.estimation.dense.sampler_rev' extension 2021-07-11T18:08:08,118 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp 2021-07-11T18:08:08,284 msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’: 2021-07-11T18:08:08,285 msmtools/estimation/dense/_ranlib.c:1567:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-11T18:08:08,285 1567 | int m; 2021-07-11T18:08:08,285 | ^ 2021-07-11T18:08:09,741 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp 2021-07-11T18:08:09,857 msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’: 2021-07-11T18:08:09,857 msmtools/estimation/dense/_rnglib.c:467:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-11T18:08:09,857 467 | int j; 2021-07-11T18:08:09,857 | ^ 2021-07-11T18:08:09,864 msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’: 2021-07-11T18:08:09,864 msmtools/estimation/dense/_rnglib.c:1628:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-11T18:08:09,864 1628 | int i; 2021-07-11T18:08:09,865 | ^ 2021-07-11T18:08:09,865 msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’: 2021-07-11T18:08:09,866 msmtools/estimation/dense/_rnglib.c:1727:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-11T18:08:09,866 1727 | int i; 2021-07-11T18:08:09,866 | ^ 2021-07-11T18:08:10,385 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o -fopenmp 2021-07-11T18:08:10,991 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -fopenmp 2021-07-11T18:08:11,385 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T18:08:11,385 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T18:08:11,385 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T18:08:11,385 from msmtools/estimation/dense/sampler_rev.c:640: 2021-07-11T18:08:11,385 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T18:08:11,386 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T18:08:11,386 | ^~~~~~~ 2021-07-11T18:08:19,452 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T18:08:19,618 building 'msmtools.estimation.dense.sampler_revpi' extension 2021-07-11T18:08:19,619 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp 2021-07-11T18:08:19,775 msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’: 2021-07-11T18:08:19,775 msmtools/estimation/dense/_ranlib.c:1567:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-11T18:08:19,775 1567 | int m; 2021-07-11T18:08:19,776 | ^ 2021-07-11T18:08:21,235 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp 2021-07-11T18:08:21,346 msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’: 2021-07-11T18:08:21,347 msmtools/estimation/dense/_rnglib.c:467:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-11T18:08:21,347 467 | int j; 2021-07-11T18:08:21,347 | ^ 2021-07-11T18:08:21,353 msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’: 2021-07-11T18:08:21,354 msmtools/estimation/dense/_rnglib.c:1628:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-11T18:08:21,354 1628 | int i; 2021-07-11T18:08:21,354 | ^ 2021-07-11T18:08:21,355 msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’: 2021-07-11T18:08:21,355 msmtools/estimation/dense/_rnglib.c:1727:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-11T18:08:21,356 1727 | int i; 2021-07-11T18:08:21,356 | ^ 2021-07-11T18:08:21,878 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o -fopenmp 2021-07-11T18:08:22,317 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -fopenmp 2021-07-11T18:08:22,687 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T18:08:22,688 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T18:08:22,688 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T18:08:22,688 from msmtools/estimation/dense/sampler_revpi.c:640: 2021-07-11T18:08:22,688 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T18:08:22,688 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T18:08:22,688 | ^~~~~~~ 2021-07-11T18:08:32,014 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T18:08:32,191 installing to build/bdist.linux-armv7l/wheel 2021-07-11T18:08:32,191 running install 2021-07-11T18:08:32,193 running install_lib 2021-07-11T18:08:32,198 creating build/bdist.linux-armv7l 2021-07-11T18:08:32,199 creating build/bdist.linux-armv7l/wheel 2021-07-11T18:08:32,201 creating build/bdist.linux-armv7l/wheel/msmtools 2021-07-11T18:08:32,203 creating build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T18:08:32,205 copying build/lib.linux-armv7l-3.9/msmtools/flux/api.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T18:08:32,209 creating build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T18:08:32,210 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T18:08:32,213 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T18:08:32,215 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T18:08:32,217 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T18:08:32,220 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T18:08:32,223 copying build/lib.linux-armv7l-3.9/msmtools/flux/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T18:08:32,226 creating build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-11T18:08:32,227 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-11T18:08:32,231 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-11T18:08:32,233 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-11T18:08:32,236 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T18:08:32,239 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T18:08:32,242 copying build/lib.linux-armv7l-3.9/msmtools/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-11T18:08:32,245 creating build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-11T18:08:32,246 copying build/lib.linux-armv7l-3.9/msmtools/estimation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-11T18:08:32,251 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,251 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,254 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,256 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,267 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,269 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,270 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,272 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,274 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,276 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,278 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,281 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/effective_counts.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,283 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,293 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T18:08:32,295 copying build/lib.linux-armv7l-3.9/msmtools/estimation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-11T18:08:32,297 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,298 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,301 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,311 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,313 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,316 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,318 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,320 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,328 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,352 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,354 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,356 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_nrev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,357 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T18:08:32,373 creating build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-11T18:08:32,374 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/api.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-11T18:08:32,377 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-11T18:08:32,379 creating build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-11T18:08:32,380 copying build/lib.linux-armv7l-3.9/msmtools/analysis/api.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-11T18:08:32,384 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,385 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,388 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,389 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,392 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,394 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,396 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,398 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,400 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,402 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,404 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,406 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,409 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,411 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,414 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,416 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,418 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T18:08:32,420 copying build/lib.linux-armv7l-3.9/msmtools/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-11T18:08:32,423 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,424 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,427 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,429 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,431 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,433 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,435 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,438 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,440 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,442 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,445 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,447 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,449 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,451 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,454 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,455 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,458 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,460 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,462 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,465 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,468 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,470 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,473 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,475 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,477 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T18:08:32,480 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,481 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,483 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/P_rev_251x251.dat -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,525 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,527 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,530 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,532 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,534 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_mfpt.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,537 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,539 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T18:08:32,542 copying build/lib.linux-armv7l-3.9/msmtools/_version.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-11T18:08:32,544 creating build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-11T18:08:32,545 copying build/lib.linux-armv7l-3.9/msmtools/generation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-11T18:08:32,548 copying build/lib.linux-armv7l-3.9/msmtools/generation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-11T18:08:32,550 creating build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T18:08:32,551 copying build/lib.linux-armv7l-3.9/msmtools/util/types.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T18:08:32,554 copying build/lib.linux-armv7l-3.9/msmtools/util/annotators.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T18:08:32,557 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-11T18:08:32,558 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-11T18:08:32,560 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-11T18:08:32,563 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,564 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,566 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,568 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,570 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,571 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,573 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,575 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,577 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,579 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,581 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,583 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,585 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,587 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,589 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,591 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T18:08:32,593 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-11T18:08:32,596 copying build/lib.linux-armv7l-3.9/msmtools/util/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T18:08:32,598 copying build/lib.linux-armv7l-3.9/msmtools/util/exceptions.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T18:08:32,600 copying build/lib.linux-armv7l-3.9/msmtools/util/statistics.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T18:08:32,602 copying build/lib.linux-armv7l-3.9/msmtools/util/numeric.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T18:08:32,604 running install_egg_info 2021-07-11T18:08:32,623 running egg_info 2021-07-11T18:08:32,624 writing msmtools.egg-info/PKG-INFO 2021-07-11T18:08:32,626 writing dependency_links to msmtools.egg-info/dependency_links.txt 2021-07-11T18:08:32,628 writing requirements to msmtools.egg-info/requires.txt 2021-07-11T18:08:32,629 writing top-level names to msmtools.egg-info/top_level.txt 2021-07-11T18:08:32,664 reading manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-11T18:08:32,677 reading manifest template 'MANIFEST.in' 2021-07-11T18:08:32,785 warning: no files found matching 'tests/data/*' under directory 'msmtools' 2021-07-11T18:08:32,830 warning: no files found matching 'testfiles/' under directory 'msmtools' 2021-07-11T18:08:33,075 adding license file 'LICENSE.txt' 2021-07-11T18:08:33,087 writing manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-11T18:08:33,089 Copying msmtools.egg-info to build/bdist.linux-armv7l/wheel/msmtools-1.1.3-py3.9.egg-info 2021-07-11T18:08:33,105 running install_scripts 2021-07-11T18:08:33,157 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-11T18:08:33,162 creating build/bdist.linux-armv7l/wheel/msmtools-1.1.3.dist-info/WHEEL 2021-07-11T18:08:33,165 creating '/tmp/pip-wheel-5vr9k08y/msmtools-1.1.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-11T18:08:33,168 adding 'msmtools/__init__.py' 2021-07-11T18:08:33,169 adding 'msmtools/_version.py' 2021-07-11T18:08:33,171 adding 'msmtools/analysis/__init__.py' 2021-07-11T18:08:33,178 adding 'msmtools/analysis/api.py' 2021-07-11T18:08:33,182 adding 'msmtools/analysis/dense/__init__.py' 2021-07-11T18:08:33,183 adding 'msmtools/analysis/dense/assessment.py' 2021-07-11T18:08:33,185 adding 'msmtools/analysis/dense/assessment_test.py' 2021-07-11T18:08:33,186 adding 'msmtools/analysis/dense/birth_death_chain.py' 2021-07-11T18:08:33,188 adding 'msmtools/analysis/dense/committor.py' 2021-07-11T18:08:33,189 adding 'msmtools/analysis/dense/committor_test.py' 2021-07-11T18:08:33,191 adding 'msmtools/analysis/dense/correlations.py' 2021-07-11T18:08:33,193 adding 'msmtools/analysis/dense/correlations_test.py' 2021-07-11T18:08:33,195 adding 'msmtools/analysis/dense/decomposition.py' 2021-07-11T18:08:33,197 adding 'msmtools/analysis/dense/decomposition_test.py' 2021-07-11T18:08:33,199 adding 'msmtools/analysis/dense/expectations.py' 2021-07-11T18:08:33,201 adding 'msmtools/analysis/dense/expectations_test.py' 2021-07-11T18:08:33,203 adding 'msmtools/analysis/dense/fingerprints.py' 2021-07-11T18:08:33,205 adding 'msmtools/analysis/dense/fingerprints_test.py' 2021-07-11T18:08:33,206 adding 'msmtools/analysis/dense/hitting_probability.py' 2021-07-11T18:08:33,207 adding 'msmtools/analysis/dense/hitting_probability_test.py' 2021-07-11T18:08:33,209 adding 'msmtools/analysis/dense/mean_first_passage_time.py' 2021-07-11T18:08:33,210 adding 'msmtools/analysis/dense/mean_first_passage_time_test.py' 2021-07-11T18:08:33,213 adding 'msmtools/analysis/dense/pcca.py' 2021-07-11T18:08:33,215 adding 'msmtools/analysis/dense/pcca_test.py' 2021-07-11T18:08:33,217 adding 'msmtools/analysis/dense/sensitivity.py' 2021-07-11T18:08:33,218 adding 'msmtools/analysis/dense/sensitivity_test.py' 2021-07-11T18:08:33,220 adding 'msmtools/analysis/dense/stationary_vector.py' 2021-07-11T18:08:33,221 adding 'msmtools/analysis/dense/stationary_vector_test.py' 2021-07-11T18:08:33,223 adding 'msmtools/analysis/sparse/__init__.py' 2021-07-11T18:08:33,224 adding 'msmtools/analysis/sparse/assessment.py' 2021-07-11T18:08:33,226 adding 'msmtools/analysis/sparse/assessment_test.py' 2021-07-11T18:08:33,228 adding 'msmtools/analysis/sparse/birth_death_chain.py' 2021-07-11T18:08:33,229 adding 'msmtools/analysis/sparse/committor.py' 2021-07-11T18:08:33,231 adding 'msmtools/analysis/sparse/committor_test.py' 2021-07-11T18:08:33,233 adding 'msmtools/analysis/sparse/decomposition.py' 2021-07-11T18:08:33,235 adding 'msmtools/analysis/sparse/decomposition_test.py' 2021-07-11T18:08:33,236 adding 'msmtools/analysis/sparse/expectations.py' 2021-07-11T18:08:33,238 adding 'msmtools/analysis/sparse/expectations_test.py' 2021-07-11T18:08:33,240 adding 'msmtools/analysis/sparse/fingerprints.py' 2021-07-11T18:08:33,241 adding 'msmtools/analysis/sparse/fingerprints_test.py' 2021-07-11T18:08:33,243 adding 'msmtools/analysis/sparse/mean_first_passage_time.py' 2021-07-11T18:08:33,244 adding 'msmtools/analysis/sparse/mean_first_passage_time_test.py' 2021-07-11T18:08:33,246 adding 'msmtools/analysis/sparse/stationary_vector.py' 2021-07-11T18:08:33,247 adding 'msmtools/analysis/sparse/stationary_vector_test.py' 2021-07-11T18:08:33,326 adding 'msmtools/analysis/tests/P_rev_251x251.dat' 2021-07-11T18:08:33,340 adding 'msmtools/analysis/tests/birth_death_chain.py' 2021-07-11T18:08:33,342 adding 'msmtools/analysis/tests/test_assessment.py' 2021-07-11T18:08:33,344 adding 'msmtools/analysis/tests/test_committor.py' 2021-07-11T18:08:33,346 adding 'msmtools/analysis/tests/test_decomposition.py' 2021-07-11T18:08:33,348 adding 'msmtools/analysis/tests/test_expectations.py' 2021-07-11T18:08:33,349 adding 'msmtools/analysis/tests/test_fingerprints.py' 2021-07-11T18:08:33,351 adding 'msmtools/analysis/tests/test_mfpt.py' 2021-07-11T18:08:33,352 adding 'msmtools/analysis/tests/test_sensitivity.py' 2021-07-11T18:08:33,354 adding 'msmtools/dtraj/__init__.py' 2021-07-11T18:08:33,357 adding 'msmtools/dtraj/api.py' 2021-07-11T18:08:33,358 adding 'msmtools/estimation/__init__.py' 2021-07-11T18:08:33,364 adding 'msmtools/estimation/api.py' 2021-07-11T18:08:33,366 adding 'msmtools/estimation/dense/__init__.py' 2021-07-11T18:08:33,368 adding 'msmtools/estimation/dense/bootstrapping.py' 2021-07-11T18:08:33,369 adding 'msmtools/estimation/dense/covariance.py' 2021-07-11T18:08:33,371 adding 'msmtools/estimation/dense/covariance_test.py' 2021-07-11T18:08:33,426 adding 'msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T18:08:33,471 adding 'msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T18:08:33,474 adding 'msmtools/estimation/dense/sampler_nrev.py' 2021-07-11T18:08:33,616 adding 'msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T18:08:33,773 adding 'msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T18:08:33,781 adding 'msmtools/estimation/dense/tmatrix_sampler.py' 2021-07-11T18:08:33,782 adding 'msmtools/estimation/dense/tmatrix_sampler_test.py' 2021-07-11T18:08:33,783 adding 'msmtools/estimation/dense/transition_matrix.py' 2021-07-11T18:08:33,785 adding 'msmtools/estimation/sparse/__init__.py' 2021-07-11T18:08:33,787 adding 'msmtools/estimation/sparse/connectivity.py' 2021-07-11T18:08:33,788 adding 'msmtools/estimation/sparse/connectivity_test.py' 2021-07-11T18:08:33,790 adding 'msmtools/estimation/sparse/count_matrix.py' 2021-07-11T18:08:33,791 adding 'msmtools/estimation/sparse/effective_counts.py' 2021-07-11T18:08:33,793 adding 'msmtools/estimation/sparse/likelihood.py' 2021-07-11T18:08:33,794 adding 'msmtools/estimation/sparse/likelihood_test.py' 2021-07-11T18:08:33,856 adding 'msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T18:08:33,917 adding 'msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T18:08:33,921 adding 'msmtools/estimation/sparse/prior.py' 2021-07-11T18:08:33,922 adding 'msmtools/estimation/sparse/prior_test.py' 2021-07-11T18:08:33,923 adding 'msmtools/estimation/sparse/transition_matrix.py' 2021-07-11T18:08:33,925 adding 'msmtools/estimation/sparse/transition_matrix_test.py' 2021-07-11T18:08:33,927 adding 'msmtools/flux/__init__.py' 2021-07-11T18:08:33,929 adding 'msmtools/flux/api.py' 2021-07-11T18:08:33,931 adding 'msmtools/flux/reactive_flux.py' 2021-07-11T18:08:33,933 adding 'msmtools/flux/reactive_flux_test.py' 2021-07-11T18:08:33,935 adding 'msmtools/flux/dense/__init__.py' 2021-07-11T18:08:33,936 adding 'msmtools/flux/dense/tpt.py' 2021-07-11T18:08:33,938 adding 'msmtools/flux/dense/tpt_test.py' 2021-07-11T18:08:33,940 adding 'msmtools/flux/sparse/__init__.py' 2021-07-11T18:08:33,942 adding 'msmtools/flux/sparse/pathways.py' 2021-07-11T18:08:33,943 adding 'msmtools/flux/sparse/pathways_test.py' 2021-07-11T18:08:33,945 adding 'msmtools/flux/sparse/tpt.py' 2021-07-11T18:08:33,947 adding 'msmtools/flux/sparse/tpt_test.py' 2021-07-11T18:08:33,949 adding 'msmtools/generation/__init__.py' 2021-07-11T18:08:33,950 adding 'msmtools/generation/api.py' 2021-07-11T18:08:33,952 adding 'msmtools/util/__init__.py' 2021-07-11T18:08:33,954 adding 'msmtools/util/annotators.py' 2021-07-11T18:08:33,956 adding 'msmtools/util/exceptions.py' 2021-07-11T18:08:33,957 adding 'msmtools/util/numeric.py' 2021-07-11T18:08:33,959 adding 'msmtools/util/statistics.py' 2021-07-11T18:08:33,961 adding 'msmtools/util/types.py' 2021-07-11T18:08:33,963 adding 'msmtools/util/matrix/__init__.py' 2021-07-11T18:08:33,965 adding 'msmtools/util/matrix/matrix.py' 2021-07-11T18:08:33,967 adding 'msmtools/util/matrix/matrix_test.py' 2021-07-11T18:08:33,969 adding 'msmtools/util/matrix/testfiles/matrix_complex.dat' 2021-07-11T18:08:33,970 adding 'msmtools/util/matrix/testfiles/matrix_complex.npy' 2021-07-11T18:08:33,971 adding 'msmtools/util/matrix/testfiles/matrix_float.dat' 2021-07-11T18:08:33,972 adding 'msmtools/util/matrix/testfiles/matrix_float.npy' 2021-07-11T18:08:33,973 adding 'msmtools/util/matrix/testfiles/matrix_int.dat' 2021-07-11T18:08:33,975 adding 'msmtools/util/matrix/testfiles/matrix_int.npy' 2021-07-11T18:08:33,976 adding 'msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat' 2021-07-11T18:08:33,977 adding 'msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy' 2021-07-11T18:08:33,978 adding 'msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat' 2021-07-11T18:08:33,980 adding 'msmtools/util/matrix/testfiles/spmatrix_float.coo.dat' 2021-07-11T18:08:33,981 adding 'msmtools/util/matrix/testfiles/spmatrix_float.coo.npy' 2021-07-11T18:08:33,982 adding 'msmtools/util/matrix/testfiles/spmatrix_float_reference.dat' 2021-07-11T18:08:33,983 adding 'msmtools/util/matrix/testfiles/spmatrix_int.coo.dat' 2021-07-11T18:08:33,984 adding 'msmtools/util/matrix/testfiles/spmatrix_int.coo.npy' 2021-07-11T18:08:33,985 adding 'msmtools/util/matrix/testfiles/spmatrix_int_reference.dat' 2021-07-11T18:08:33,988 adding 'msmtools-1.1.3.dist-info/LICENSE.txt' 2021-07-11T18:08:33,990 adding 'msmtools-1.1.3.dist-info/METADATA' 2021-07-11T18:08:33,991 adding 'msmtools-1.1.3.dist-info/WHEEL' 2021-07-11T18:08:33,992 adding 'msmtools-1.1.3.dist-info/pbr.json' 2021-07-11T18:08:33,992 adding 'msmtools-1.1.3.dist-info/top_level.txt' 2021-07-11T18:08:33,995 adding 'msmtools-1.1.3.dist-info/RECORD' 2021-07-11T18:08:34,017 removing build/bdist.linux-armv7l/wheel 2021-07-11T18:08:34,209 Building wheel for msmtools (setup.py): finished with status 'done' 2021-07-11T18:08:34,230 Created wheel for msmtools: filename=msmtools-1.1.3-cp39-cp39-linux_armv7l.whl size=1334587 sha256=b915b41fe32863b396806b95d0f00cc5b391cc9890cf89428a481c806e7840d0 2021-07-11T18:08:34,230 Stored in directory: /tmp/pip-ephem-wheel-cache-uy4418cf/wheels/9f/36/a2/259adf2a8def8a3cf58c19648e3193370431419a6dbdd8acce 2021-07-11T18:08:34,244 Successfully built msmtools 2021-07-11T18:08:34,296 Removed build tracker: '/tmp/pip-req-tracker-ottzox3_'