2021-07-11T18:28:34,246 Created temporary directory: /tmp/pip-ephem-wheel-cache-6vz3d53_
2021-07-11T18:28:34,249 Created temporary directory: /tmp/pip-req-tracker-bwzlpof5
2021-07-11T18:28:34,250 Initialized build tracking at /tmp/pip-req-tracker-bwzlpof5
2021-07-11T18:28:34,250 Created build tracker: /tmp/pip-req-tracker-bwzlpof5
2021-07-11T18:28:34,250 Entered build tracker: /tmp/pip-req-tracker-bwzlpof5
2021-07-11T18:28:34,251 Created temporary directory: /tmp/pip-wheel-0lowx5_h
2021-07-11T18:28:34,280 1 location(s) to search for versions of mikado:
2021-07-11T18:28:34,280 * https://pypi.org/simple/mikado/
2021-07-11T18:28:34,280 Fetching project page and analyzing links: https://pypi.org/simple/mikado/
2021-07-11T18:28:34,281 Getting page https://pypi.org/simple/mikado/
2021-07-11T18:28:34,282 Found index url https://pypi.org/simple
2021-07-11T18:28:34,383 Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1
2021-07-11T18:28:34,383 Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 (from https://pypi.org/simple/mikado/), version: 1.0.0b9
2021-07-11T18:28:34,384 Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab (from https://pypi.org/simple/mikado/), version: 1.0.0b10
2021-07-11T18:28:34,384 Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 (from https://pypi.org/simple/mikado/), version: 1.0
2021-07-11T18:28:34,384 Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e (from https://pypi.org/simple/mikado/), version: 1.1
2021-07-11T18:28:34,385 Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz#sha256=43b2734aee61c437fd6d2c8645e10c1a9f723fa60505e3065bfea1f4a771e44e (from https://pypi.org/simple/mikado/), version: 1.2
2021-07-11T18:28:34,385 Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 (from https://pypi.org/simple/mikado/), version: 1.2.1
2021-07-11T18:28:34,385 Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 (from https://pypi.org/simple/mikado/), version: 1.2.2
2021-07-11T18:28:34,403 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=86046d7c1d80363ae0bdea8adbaa73a499d288c1540ed7b7ef6cf2df8db2b809 (from https://pypi.org/simple/mikado/)
2021-07-11T18:28:34,403 Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 (from https://pypi.org/simple/mikado/), version: 1.2.4
2021-07-11T18:28:34,403 Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz#sha256=745ffb74e62d1d1e777f1b6fc84acb8aae2f27290d40301fec0971560e6ba054 (from https://pypi.org/simple/mikado/), version: 2.0rc1
2021-07-11T18:28:34,404 Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz#sha256=3cbf2465f9e42dc7a02f8c4aff8625e5421010e3df7a6b3f98d87e82f5534e26 (from https://pypi.org/simple/mikado/), version: 2.0rc2
2021-07-11T18:28:34,404 Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz#sha256=f4736adb1014c70758f12904bf7dfe10e153b9497bdb82903d231540a23b8d57 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0
2021-07-11T18:28:34,405 Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz#sha256=d77bf5ca843d8cea35208c52750d014d704d46889633d5ac0f12edba6b5aa131 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1
2021-07-11T18:28:34,406 Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz#sha256=6c58ccab055f95cdbb0fb0273397ce72186ff7d99fd5ba4bdeb812ea4c18f1a6 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2
2021-07-11T18:28:34,406 Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz#sha256=b8ca7cecead9e30430de2c205e65c961b3d704d9351b85d6108577f9ffaba58f (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0
2021-07-11T18:28:34,407 Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz#sha256=2107de041d57cac81b1ff52da2b1d029f6c66f7fde78adc66cfbafd57a5215b7 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1
2021-07-11T18:28:34,407 Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz#sha256=0892dce8b07c655c63918933aaf4a47292bc5602f6be4b226756106c21c53177 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0
2021-07-11T18:28:34,408 Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz#sha256=2f8d410340e39b0fced63ee523391eae8f18751f3a0910de1cf1a27e1129d210 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1
2021-07-11T18:28:34,408 Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz#sha256=cb9705ff46b6e67279e27ac1836443782e128619b6ea78676364d11a097a21a9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2
2021-07-11T18:28:34,409 Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz#sha256=bdbdbdeb56bab4a4d633a0be36aea1aac3c025763a5d6721c98982ac1bd17bf9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3
2021-07-11T18:28:34,410 Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz#sha256=d7eeecb13334dcfee2e8b484e3aa4c31990a7e1f1e0001cabe5a669ef7c9f433 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4
2021-07-11T18:28:34,410 Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz#sha256=ea10960477612dd0a387b2135ed76dbc23e2957b3241c8726559541b88b9ee2e (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5
2021-07-11T18:28:34,411 Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz#sha256=c785197f0b6e6f8597100a63181a0d39109bec914e9691a0a972a5244da5cd32 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0
2021-07-11T18:28:34,411 Skipping link: not a file: https://pypi.org/simple/mikado/
2021-07-11T18:28:34,415 Given no hashes to check 1 links for project 'mikado': discarding no candidates
2021-07-11T18:28:34,434 Collecting mikado==1.0.0b5.post1
2021-07-11T18:28:34,436 Created temporary directory: /tmp/pip-unpack-llft8f2f
2021-07-11T18:28:34,480 Downloading Mikado-1.0.0b5.post1.tar.gz (418 kB)
2021-07-11T18:28:34,970 Added mikado==1.0.0b5.post1 from https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 to build tracker '/tmp/pip-req-tracker-bwzlpof5'
2021-07-11T18:28:34,971 Running setup.py (path:/tmp/pip-wheel-0lowx5_h/mikado_31a298ca6ec44262863b7e794e19374d/setup.py) egg_info for package mikado
2021-07-11T18:28:34,972 Created temporary directory: /tmp/pip-pip-egg-info-3vvf82a1
2021-07-11T18:28:34,972 Running command python setup.py egg_info
2021-07-11T18:28:36,800 running egg_info
2021-07-11T18:28:36,802 creating /tmp/pip-pip-egg-info-3vvf82a1/Mikado.egg-info
2021-07-11T18:28:36,803 writing /tmp/pip-pip-egg-info-3vvf82a1/Mikado.egg-info/PKG-INFO
2021-07-11T18:28:36,809 writing dependency_links to /tmp/pip-pip-egg-info-3vvf82a1/Mikado.egg-info/dependency_links.txt
2021-07-11T18:28:36,813 writing entry points to /tmp/pip-pip-egg-info-3vvf82a1/Mikado.egg-info/entry_points.txt
2021-07-11T18:28:36,817 writing requirements to /tmp/pip-pip-egg-info-3vvf82a1/Mikado.egg-info/requires.txt
2021-07-11T18:28:36,818 writing top-level names to /tmp/pip-pip-egg-info-3vvf82a1/Mikado.egg-info/top_level.txt
2021-07-11T18:28:36,820 writing manifest file '/tmp/pip-pip-egg-info-3vvf82a1/Mikado.egg-info/SOURCES.txt'
2021-07-11T18:28:37,043 reading manifest file '/tmp/pip-pip-egg-info-3vvf82a1/Mikado.egg-info/SOURCES.txt'
2021-07-11T18:28:37,049 reading manifest template 'MANIFEST.in'
2021-07-11T18:28:37,052 warning: manifest_maker: MANIFEST.in, line 5: 'recursive-include' expects
...
2021-07-11T18:28:37,408 warning: no files found matching '*py' under directory 'bin'
2021-07-11T18:28:37,606 adding license file 'AUTHORS'
2021-07-11T18:28:37,615 writing manifest file '/tmp/pip-pip-egg-info-3vvf82a1/Mikado.egg-info/SOURCES.txt'
2021-07-11T18:28:37,718 Source in /tmp/pip-wheel-0lowx5_h/mikado_31a298ca6ec44262863b7e794e19374d has version 1.0.0b5.post1, which satisfies requirement mikado==1.0.0b5.post1 from https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6
2021-07-11T18:28:37,719 Removed mikado==1.0.0b5.post1 from https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 from build tracker '/tmp/pip-req-tracker-bwzlpof5'
2021-07-11T18:28:37,723 Created temporary directory: /tmp/pip-unpack-d1o_dpva
2021-07-11T18:28:37,724 Building wheels for collected packages: mikado
2021-07-11T18:28:37,728 Created temporary directory: /tmp/pip-wheel-0uz0x4fi
2021-07-11T18:28:37,728 Building wheel for mikado (setup.py): started
2021-07-11T18:28:37,729 Destination directory: /tmp/pip-wheel-0uz0x4fi
2021-07-11T18:28:37,729 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0lowx5_h/mikado_31a298ca6ec44262863b7e794e19374d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0lowx5_h/mikado_31a298ca6ec44262863b7e794e19374d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0uz0x4fi
2021-07-11T18:28:39,517 running bdist_wheel
2021-07-11T18:28:39,523 running build
2021-07-11T18:28:39,523 running build_py
2021-07-11T18:28:39,693 creating build
2021-07-11T18:28:39,693 creating build/lib.linux-armv7l-3.9
2021-07-11T18:28:39,693 creating build/lib.linux-armv7l-3.9/Mikado
2021-07-11T18:28:39,694 copying Mikado/__init__.py -> build/lib.linux-armv7l-3.9/Mikado
2021-07-11T18:28:39,697 copying Mikado/exceptions.py -> build/lib.linux-armv7l-3.9/Mikado
2021-07-11T18:28:39,699 creating build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:39,700 copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:39,702 copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:39,704 copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:39,708 copying Mikado/scales/compare.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:39,712 copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:39,717 creating build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-11T18:28:39,718 copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-11T18:28:39,721 copying Mikado/picking/picker.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-11T18:28:39,727 copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-11T18:28:39,736 creating build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,737 copying Mikado/test/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,742 copying Mikado/test/transcript_tester_positive.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,750 copying Mikado/test/utilities_tester.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,757 copying Mikado/test/test_metrics.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,764 copying Mikado/test/test_serialisation.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,772 copying Mikado/test/test_splitting.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,780 copying Mikado/test/locus_tester.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,786 copying Mikado/test/test_db_utils.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,789 copying Mikado/test/assigner_tester.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,794 copying Mikado/test/transcript_tester_negative.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,797 copying Mikado/test/test_modifications.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,799 copying Mikado/test/intervaltree_tests.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,802 copying Mikado/test/parser_testing.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,804 copying Mikado/test/test_transcript_methods.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,807 copying Mikado/test/test_abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,810 copying Mikado/test/test_gene.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,812 copying Mikado/test/phases_checker.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,814 copying Mikado/test/orf_tester.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,818 copying Mikado/test/test_clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,820 copying Mikado/test/transcript_tester_single.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,823 copying Mikado/test/test_transcript_checker.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,825 copying Mikado/test/test_blast_related.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,827 copying Mikado/test/test_excluded.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,829 copying Mikado/test/test_invalid_orfs.py -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:39,832 creating build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-11T18:28:39,833 copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-11T18:28:39,835 copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-11T18:28:39,838 copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-11T18:28:39,840 copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-11T18:28:39,843 copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-11T18:28:39,845 copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-11T18:28:39,847 copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-11T18:28:39,851 creating build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-11T18:28:39,852 copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-11T18:28:39,854 copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-11T18:28:39,856 copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-11T18:28:39,860 creating build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-11T18:28:39,861 copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-11T18:28:39,863 copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-11T18:28:39,865 copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-11T18:28:39,868 copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-11T18:28:39,871 copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-11T18:28:39,874 copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-11T18:28:39,877 copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-11T18:28:39,881 creating build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-11T18:28:39,881 copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-11T18:28:39,883 copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-11T18:28:39,886 copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-11T18:28:39,888 copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-11T18:28:39,891 creating build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-11T18:28:39,892 copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-11T18:28:39,896 creating build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,897 copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,899 copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,901 copying Mikado/loci/clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,903 copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,907 copying Mikado/loci/transcriptchecker.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,910 copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,913 copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,916 copying Mikado/loci/transcript.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,920 copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,922 copying Mikado/loci/locus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,937 copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,940 copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-11T18:28:39,944 creating build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-11T18:28:39,945 copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-11T18:28:39,947 copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-11T18:28:39,950 copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-11T18:28:39,953 creating build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-11T18:28:39,954 copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-11T18:28:39,956 copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-11T18:28:39,959 copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-11T18:28:39,963 creating build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-11T18:28:39,964 copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-11T18:28:39,966 copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-11T18:28:39,968 copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-11T18:28:39,971 copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-11T18:28:39,973 copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-11T18:28:39,975 copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-11T18:28:39,977 copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-11T18:28:39,980 copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-11T18:28:39,983 creating build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-11T18:28:39,984 copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-11T18:28:39,986 copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-11T18:28:39,988 copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-11T18:28:39,990 copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-11T18:28:39,993 copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-11T18:28:39,996 copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-11T18:28:39,998 copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-11T18:28:40,001 creating build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-11T18:28:40,002 copying Mikado/loci/transcript_methods/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-11T18:28:40,004 copying Mikado/loci/transcript_methods/finalizing.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-11T18:28:40,006 copying Mikado/loci/transcript_methods/retrieval.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-11T18:28:40,009 copying Mikado/loci/transcript_methods/printing.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-11T18:28:40,012 copying Mikado/loci/transcript_methods/splitting.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-11T18:28:40,015 running egg_info
2021-07-11T18:28:40,030 writing Mikado.egg-info/PKG-INFO
2021-07-11T18:28:40,032 writing dependency_links to Mikado.egg-info/dependency_links.txt
2021-07-11T18:28:40,034 writing entry points to Mikado.egg-info/entry_points.txt
2021-07-11T18:28:40,035 writing requirements to Mikado.egg-info/requires.txt
2021-07-11T18:28:40,036 writing top-level names to Mikado.egg-info/top_level.txt
2021-07-11T18:28:40,054 reading manifest file 'Mikado.egg-info/SOURCES.txt'
2021-07-11T18:28:40,059 reading manifest template 'MANIFEST.in'
2021-07-11T18:28:40,060 warning: manifest_maker: MANIFEST.in, line 5: 'recursive-include' expects ...
2021-07-11T18:28:40,179 warning: no files found matching '*py' under directory 'bin'
2021-07-11T18:28:40,375 adding license file 'AUTHORS'
2021-07-11T18:28:40,387 writing manifest file 'Mikado.egg-info/SOURCES.txt'
2021-07-11T18:28:40,395 copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:40,406 copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:40,408 copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:40,411 copying Mikado/scales/f1.c -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:40,416 copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:40,418 copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:40,420 copying Mikado/scales/intervaltree.c -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:40,433 copying Mikado/scales/intervaltree.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:40,436 copying Mikado/test/configuration.yaml -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:40,439 copying Mikado/test/plants.yaml -> build/lib.linux-armv7l-3.9/Mikado/test
2021-07-11T18:28:40,441 copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-11T18:28:40,444 copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-11T18:28:40,446 copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-11T18:28:40,448 copying Mikado/daijin/local.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-11T18:28:40,451 copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-11T18:28:40,454 copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-11T18:28:40,457 copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-11T18:28:40,464 copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-11T18:28:40,466 copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-11T18:28:40,468 copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-11T18:28:40,473 copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-11T18:28:40,476 copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-11T18:28:40,478 copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-11T18:28:40,481 creating build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-11T18:28:40,482 copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-11T18:28:40,484 copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-11T18:28:40,487 copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-11T18:28:40,490 copying Mikado/configuration/scoring_files/spombe.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-11T18:28:40,492 copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-11T18:28:40,507 running build_ext
2021-07-11T18:28:40,512 building 'Mikado.utilities.overlap' extension
2021-07-11T18:28:40,512 creating build/temp.linux-armv7l-3.9
2021-07-11T18:28:40,512 creating build/temp.linux-armv7l-3.9/Mikado
2021-07-11T18:28:40,513 creating build/temp.linux-armv7l-3.9/Mikado/utilities
2021-07-11T18:28:40,514 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o
2021-07-11T18:28:40,908 Mikado/utilities/overlap.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-11T18:28:40,909 Mikado/utilities/overlap.c:2047:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,909 2047 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,910 | ^
2021-07-11T18:28:40,910 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,910 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,910 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,910 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:40,910 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:40,910 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,911 Mikado/utilities/overlap.c:2047:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,911 2047 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,911 | ^
2021-07-11T18:28:40,911 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,911 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,911 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,912 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:40,912 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:40,912 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,912 Mikado/utilities/overlap.c:2047:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,912 2047 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,912 | ^
2021-07-11T18:28:40,912 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,912 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,912 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,913 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:40,913 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:40,913 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,913 Mikado/utilities/overlap.c:2047:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,913 2047 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,913 | ^
2021-07-11T18:28:40,913 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,913 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,913 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,914 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:40,914 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:40,914 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,914 Mikado/utilities/overlap.c:2047:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,914 2047 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,914 | ^
2021-07-11T18:28:40,914 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,914 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,915 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,915 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:40,915 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:40,915 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,915 Mikado/utilities/overlap.c:2047:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,915 2047 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,915 | ^
2021-07-11T18:28:40,915 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,916 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,916 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,916 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:40,916 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:40,916 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,916 Mikado/utilities/overlap.c:2063:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,917 2063 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,917 | ^
2021-07-11T18:28:40,917 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,917 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,917 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,917 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:40,917 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:40,917 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,918 Mikado/utilities/overlap.c:2063:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,918 2063 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,918 | ^
2021-07-11T18:28:40,918 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,918 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,918 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,918 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:40,918 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:40,918 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,919 Mikado/utilities/overlap.c:2063:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,919 2063 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,919 | ^
2021-07-11T18:28:40,919 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,919 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,919 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,919 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:40,919 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:40,920 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,920 Mikado/utilities/overlap.c:2063:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,920 2063 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,920 | ^
2021-07-11T18:28:40,920 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,920 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,920 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,920 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:40,921 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:40,921 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,921 Mikado/utilities/overlap.c:2063:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,921 2063 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,921 | ^
2021-07-11T18:28:40,921 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,921 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,921 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,921 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:40,922 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:40,922 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:40,922 Mikado/utilities/overlap.c:2063:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:40,922 2063 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:40,922 | ^
2021-07-11T18:28:40,922 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:40,922 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:40,922 from Mikado/utilities/overlap.c:10:
2021-07-11T18:28:40,923 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:40,923 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:40,923 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,195 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o -o build/lib.linux-armv7l-3.9/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so
2021-07-11T18:28:42,313 building 'Mikado.scales.f1' extension
2021-07-11T18:28:42,313 creating build/temp.linux-armv7l-3.9/Mikado/scales
2021-07-11T18:28:42,314 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-3.9/Mikado/scales/f1.o
2021-07-11T18:28:42,700 Mikado/scales/f1.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-11T18:28:42,700 Mikado/scales/f1.c:1763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,700 1763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,701 | ^
2021-07-11T18:28:42,701 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,701 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,701 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,701 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:42,702 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:42,702 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,702 Mikado/scales/f1.c:1763:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,702 1763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,702 | ^
2021-07-11T18:28:42,702 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,702 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,703 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,703 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:42,703 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:42,703 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,703 Mikado/scales/f1.c:1763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,703 1763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,703 | ^
2021-07-11T18:28:42,704 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,704 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,704 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,704 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:42,704 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:42,704 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,704 Mikado/scales/f1.c:1763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,704 1763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,705 | ^
2021-07-11T18:28:42,705 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,705 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,705 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,705 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:42,705 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:42,705 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,705 Mikado/scales/f1.c:1763:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,705 1763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,706 | ^
2021-07-11T18:28:42,706 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,706 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,706 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,706 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:42,706 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:42,706 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,707 Mikado/scales/f1.c:1763:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,707 1763 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,707 | ^
2021-07-11T18:28:42,707 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,707 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,707 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,707 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:42,707 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:42,708 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,708 Mikado/scales/f1.c:1779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,708 1779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,708 | ^
2021-07-11T18:28:42,708 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,708 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,708 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,708 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:42,709 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:42,709 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,709 Mikado/scales/f1.c:1779:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,709 1779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,709 | ^
2021-07-11T18:28:42,709 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,709 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,710 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,710 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:42,710 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:42,710 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,710 Mikado/scales/f1.c:1779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,710 1779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,710 | ^
2021-07-11T18:28:42,710 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,711 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,711 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,711 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:42,711 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:42,711 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,711 Mikado/scales/f1.c:1779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,711 1779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,712 | ^
2021-07-11T18:28:42,712 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,712 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,712 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,712 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:42,712 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:42,712 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,712 Mikado/scales/f1.c:1779:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,712 1779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,713 | ^
2021-07-11T18:28:42,713 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,713 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,713 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,713 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:42,713 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:42,713 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:42,713 Mikado/scales/f1.c:1779:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:42,714 1779 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:42,714 | ^
2021-07-11T18:28:42,714 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:42,714 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:42,714 from Mikado/scales/f1.c:10:
2021-07-11T18:28:42,714 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:42,714 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:42,714 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:43,592 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/scales/f1.o -o build/lib.linux-armv7l-3.9/Mikado/scales/f1.cpython-39-arm-linux-gnueabihf.so
2021-07-11T18:28:43,702 building 'Mikado.scales.contrast' extension
2021-07-11T18:28:43,702 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/contrast.c -o build/temp.linux-armv7l-3.9/Mikado/scales/contrast.o
2021-07-11T18:28:44,233 Mikado/scales/contrast.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-11T18:28:44,236 Mikado/scales/contrast.c:7257:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,236 7257 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,236 | ^
2021-07-11T18:28:44,237 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,237 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,237 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,237 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:44,237 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:44,237 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,241 Mikado/scales/contrast.c:7257:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,241 7257 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,241 | ^
2021-07-11T18:28:44,242 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,242 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,242 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,242 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:44,242 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:44,242 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,245 Mikado/scales/contrast.c:7257:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,246 7257 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,246 | ^
2021-07-11T18:28:44,246 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,246 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,246 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,246 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:44,246 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:44,246 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,250 Mikado/scales/contrast.c:7257:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,250 7257 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,250 | ^
2021-07-11T18:28:44,250 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,250 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,250 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,251 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:44,251 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:44,251 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,254 Mikado/scales/contrast.c:7257:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,254 7257 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,254 | ^
2021-07-11T18:28:44,254 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,255 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,255 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,255 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:44,255 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:44,255 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,258 Mikado/scales/contrast.c:7257:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,259 7257 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,259 | ^
2021-07-11T18:28:44,259 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,259 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,259 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,259 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:44,259 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:44,259 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,264 Mikado/scales/contrast.c:7273:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,264 7273 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,264 | ^
2021-07-11T18:28:44,264 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,264 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,265 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,265 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:44,265 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:44,265 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,268 Mikado/scales/contrast.c:7273:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,268 7273 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,268 | ^
2021-07-11T18:28:44,269 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,269 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,269 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,269 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:44,269 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:44,269 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,272 Mikado/scales/contrast.c:7273:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,273 7273 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,273 | ^
2021-07-11T18:28:44,273 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,273 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,273 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,273 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:44,273 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:44,273 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,277 Mikado/scales/contrast.c:7273:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,277 7273 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,277 | ^
2021-07-11T18:28:44,277 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,277 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,277 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,278 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:44,278 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:44,278 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,281 Mikado/scales/contrast.c:7273:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,281 7273 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,281 | ^
2021-07-11T18:28:44,282 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,282 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,282 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,282 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:44,282 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:44,282 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:44,285 Mikado/scales/contrast.c:7273:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:44,286 7273 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:44,286 | ^
2021-07-11T18:28:44,286 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:44,286 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:44,286 from Mikado/scales/contrast.c:10:
2021-07-11T18:28:44,286 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:44,286 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:44,286 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:53,384 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/scales/contrast.o -o build/lib.linux-armv7l-3.9/Mikado/scales/contrast.cpython-39-arm-linux-gnueabihf.so
2021-07-11T18:28:53,520 building 'Mikado.scales.intervaltree' extension
2021-07-11T18:28:53,521 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/intervaltree.c -o build/temp.linux-armv7l-3.9/Mikado/scales/intervaltree.o
2021-07-11T18:28:54,039 Mikado/scales/intervaltree.c: In function ‘PyInit_intervaltree’:
2021-07-11T18:28:54,044 Mikado/scales/intervaltree.c:8697:57: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-11T18:28:54,044 8697 | __pyx_type_6Mikado_6scales_12intervaltree_IntervalNode.tp_print = 0;
2021-07-11T18:28:54,044 | ^
2021-07-11T18:28:54,048 Mikado/scales/intervaltree.c:8702:53: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-11T18:28:54,048 8702 | __pyx_type_6Mikado_6scales_12intervaltree_Interval.tp_print = 0;
2021-07-11T18:28:54,049 | ^
2021-07-11T18:28:54,053 Mikado/scales/intervaltree.c:8706:57: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
2021-07-11T18:28:54,053 8706 | __pyx_type_6Mikado_6scales_12intervaltree_IntervalTree.tp_print = 0;
2021-07-11T18:28:54,053 | ^
2021-07-11T18:28:54,061 Mikado/scales/intervaltree.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-11T18:28:54,065 Mikado/scales/intervaltree.c:9004:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,065 9004 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,066 | ^
2021-07-11T18:28:54,066 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,066 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,066 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,066 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:54,067 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:54,067 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,071 Mikado/scales/intervaltree.c:9004:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,072 9004 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,072 | ^
2021-07-11T18:28:54,072 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,072 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,072 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,072 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:54,072 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:54,072 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,077 Mikado/scales/intervaltree.c:9004:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,077 9004 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,077 | ^
2021-07-11T18:28:54,077 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,077 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,077 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,077 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:54,078 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:54,078 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,082 Mikado/scales/intervaltree.c:9004:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,082 9004 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,082 | ^
2021-07-11T18:28:54,083 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,083 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,083 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,083 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:54,083 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:54,083 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,087 Mikado/scales/intervaltree.c:9004:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,087 9004 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,088 | ^
2021-07-11T18:28:54,088 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,088 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,088 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,088 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:54,088 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:54,088 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,093 Mikado/scales/intervaltree.c:9004:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,093 9004 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,093 | ^
2021-07-11T18:28:54,093 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,093 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,093 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,094 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:54,094 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:54,094 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,099 Mikado/scales/intervaltree.c:9020:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,100 9020 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,100 | ^
2021-07-11T18:28:54,100 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,100 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,100 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,100 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:54,100 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:54,100 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,105 Mikado/scales/intervaltree.c:9020:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,105 9020 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,105 | ^
2021-07-11T18:28:54,105 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,105 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,105 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,105 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:54,106 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:54,106 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,110 Mikado/scales/intervaltree.c:9020:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,110 9020 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,110 | ^
2021-07-11T18:28:54,110 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,111 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,111 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,111 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:54,111 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:54,111 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,115 Mikado/scales/intervaltree.c:9020:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,115 9020 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,116 | ^
2021-07-11T18:28:54,116 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,116 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,116 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,116 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:54,116 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:54,116 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,121 Mikado/scales/intervaltree.c:9020:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,121 9020 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,121 | ^
2021-07-11T18:28:54,121 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,121 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,121 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,121 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-11T18:28:54,121 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-11T18:28:54,122 | ^~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,126 Mikado/scales/intervaltree.c:9020:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-11T18:28:54,126 9020 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-11T18:28:54,126 | ^
2021-07-11T18:28:54,126 In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-11T18:28:54,126 from /usr/include/python3.9/Python.h:97,
2021-07-11T18:28:54,127 from Mikado/scales/intervaltree.c:12:
2021-07-11T18:28:54,127 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-11T18:28:54,127 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-11T18:28:54,127 | ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-11T18:28:54,352 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-11T18:28:54,465 Building wheel for mikado (setup.py): finished with status 'error'
2021-07-11T18:28:54,466 ERROR: Failed building wheel for mikado
2021-07-11T18:28:54,466 Running setup.py clean for mikado
2021-07-11T18:28:54,467 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-0lowx5_h/mikado_31a298ca6ec44262863b7e794e19374d/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-0lowx5_h/mikado_31a298ca6ec44262863b7e794e19374d/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-11T18:28:56,239 running clean
2021-07-11T18:28:56,241 removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-11T18:28:56,247 removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-11T18:28:56,315 'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-11T18:28:56,316 'build/scripts-3.9' does not exist -- can't clean it
2021-07-11T18:28:56,316 removing 'build'
2021-07-11T18:28:56,411 Failed to build mikado
2021-07-11T18:28:56,411 ERROR: Failed to build one or more wheels
2021-07-11T18:28:56,412 Exception information:
2021-07-11T18:28:56,412 Traceback (most recent call last):
2021-07-11T18:28:56,412 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-11T18:28:56,412 status = self.run(options, args)
2021-07-11T18:28:56,412 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-11T18:28:56,412 return func(self, options, args)
2021-07-11T18:28:56,412 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-11T18:28:56,412 raise CommandError(
2021-07-11T18:28:56,412 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-11T18:28:56,414 Removed build tracker: '/tmp/pip-req-tracker-bwzlpof5'