2021-07-11T19:37:00,326 Created temporary directory: /tmp/pip-ephem-wheel-cache-o458vwxy 2021-07-11T19:37:00,329 Created temporary directory: /tmp/pip-req-tracker-w4j40lzs 2021-07-11T19:37:00,329 Initialized build tracking at /tmp/pip-req-tracker-w4j40lzs 2021-07-11T19:37:00,330 Created build tracker: /tmp/pip-req-tracker-w4j40lzs 2021-07-11T19:37:00,330 Entered build tracker: /tmp/pip-req-tracker-w4j40lzs 2021-07-11T19:37:00,330 Created temporary directory: /tmp/pip-wheel-rx9k4hyc 2021-07-11T19:37:00,359 1 location(s) to search for versions of msmtools: 2021-07-11T19:37:00,359 * https://pypi.org/simple/msmtools/ 2021-07-11T19:37:00,360 Fetching project page and analyzing links: https://pypi.org/simple/msmtools/ 2021-07-11T19:37:00,360 Getting page https://pypi.org/simple/msmtools/ 2021-07-11T19:37:00,362 Found index url https://pypi.org/simple 2021-07-11T19:37:00,549 Found link https://files.pythonhosted.org/packages/06/eb/7ea49c965c6d6cc5d49cf7619eb365b9f80f92d449fa2d83286d57c23b09/msmtools-1.0.tar.gz#sha256=cd2cfbb47327eb24d4855b7585868fbbc3be14c824a2eaa3fa0c2a7e76310595 (from https://pypi.org/simple/msmtools/), version: 1.0 2021-07-11T19:37:00,550 Found link https://files.pythonhosted.org/packages/c4/ca/50da8c42c7aad77f9d8f5c5cf1aa0f8812c01b78ea07c4719daca73a90fb/msmtools-1.0.1.tar.gz#sha256=b6704dea0bb816e3aca0be871f15199a18964a799854a000135ffe95a13ea0d6 (from https://pypi.org/simple/msmtools/), version: 1.0.1 2021-07-11T19:37:00,550 Found link https://files.pythonhosted.org/packages/f7/e7/8fad6dccdaf5c35379a3d670c5b17546fcf5e9b2c7feec293dec0e9fc935/msmtools-1.0.2.tar.gz#sha256=f5f9cb4a2b10f7d7f2d5b7cf520703011e6d6f7961a858c5a88b82f0ad2c494a (from https://pypi.org/simple/msmtools/), version: 1.0.2 2021-07-11T19:37:00,550 Found link https://files.pythonhosted.org/packages/83/de/45faf7ef66fef33f236ad809c86ea890dbf3df09ddb4e61cfe5420dc1d85/msmtools-1.0.3.tar.gz#sha256=82ec80a0002c587441e938d9c5ad74bd6bd984dc18ddc11a504d899c3699e710 (from https://pypi.org/simple/msmtools/), version: 1.0.3 2021-07-11T19:37:00,551 Found link https://files.pythonhosted.org/packages/e7/f8/d44eec9b8b2c1ba9b174b5343d56012c836fa3ad7f153cd732306cb2c98b/msmtools-1.0.4.tar.gz#sha256=c6e4ae2cb5c093f6791e43f2e1a82108c1b420de9c7b8bea4ad0f3f2528fb969 (from https://pypi.org/simple/msmtools/), version: 1.0.4 2021-07-11T19:37:00,551 Found link https://files.pythonhosted.org/packages/34/59/777a834fc5f75e23f2f9bb634b45c15de9a9b7f4d2eb3c6eb266c3306003/msmtools-1.1.tar.gz#sha256=74aa54d3ef38b19723d9ca54f68a0b4a9177bbf2fbb674d08e1992e941dd07c5 (from https://pypi.org/simple/msmtools/), version: 1.1 2021-07-11T19:37:00,551 Found link https://files.pythonhosted.org/packages/0a/7a/e97dc727a53d28ddaaf0d3643bf436a674d0d31e927d00fa2ded3d3095e3/msmtools-1.1.1.tar.gz#sha256=5104c598e685a767655480154e701bb4a9c79687997473fba23619cc91bc051b (from https://pypi.org/simple/msmtools/), version: 1.1.1 2021-07-11T19:37:00,552 Found link https://files.pythonhosted.org/packages/d8/83/2de718bea8c6ffd64287549e1f443695c9c7eae576e4ec8b695748735bcc/msmtools-1.1.2.tar.gz#sha256=1ae40e839dff551575e38bb8c061073a2f1e69279e53ed62f66c88006a1f0a4f (from https://pypi.org/simple/msmtools/), version: 1.1.2 2021-07-11T19:37:00,552 Found link https://files.pythonhosted.org/packages/1d/e2/b1984cd7c48fe218ade6ce2dd15849f743d0315d0091417f936f0c34f1d1/msmtools-1.1.3.tar.gz#sha256=0e96ea16139c9e58e710c8962ad37bb1941bac2a7827f5608eb1e9454bb9c29b (from https://pypi.org/simple/msmtools/), version: 1.1.3 2021-07-11T19:37:00,552 Found link https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 (from https://pypi.org/simple/msmtools/), version: 1.1.4 2021-07-11T19:37:00,552 Found link https://files.pythonhosted.org/packages/5e/a2/42d30177e9f8b9071a5cf17c6cd0a75b9b245d708fc626b015599308a898/msmtools-1.2.tar.gz#sha256=eb509f9b2bebd5a07896ec563b14df3ebee2b9871730f5ac87e1ab3179c8c6c4 (from https://pypi.org/simple/msmtools/), version: 1.2 2021-07-11T19:37:00,553 Found link https://files.pythonhosted.org/packages/c5/bb/79aa3617eed8eaea3c2639d172929079b680e1904d4e19b50d35612c5db3/msmtools-1.2.1.tar.gz#sha256=7282cec96360372e8440146dfe27848273bc3d83d18806ea56e3986a14d5bdec (from https://pypi.org/simple/msmtools/), version: 1.2.1 2021-07-11T19:37:00,553 Found link https://files.pythonhosted.org/packages/5a/56/8407c6fa43244d97fa8cfa3c47d090bc35ba7259bb3c557f6ccece19b2c0/msmtools-1.2.2.tar.gz#sha256=d184266b5a81c04730f7fcfac09bbdb9936f78711262ddbe476d566c14e3f589 (from https://pypi.org/simple/msmtools/), version: 1.2.2 2021-07-11T19:37:00,553 Found link https://files.pythonhosted.org/packages/53/84/416bd9c21c408ef59953804c1b4ec805950adfd89102c43c54685b6f3cdf/msmtools-1.2.3.tar.gz#sha256=3f3c39a4558887575dd2bfdb0711b6d073446cb0b8767eafda16bfe0b92409c9 (from https://pypi.org/simple/msmtools/), version: 1.2.3 2021-07-11T19:37:00,554 Found link https://files.pythonhosted.org/packages/c2/40/d5852a4ffb58d610467891b103f43d4adaf2602b6bcd8202969b5c66bbc8/msmtools-1.2.4.tar.gz#sha256=9f4015dd20c651e8f90666a51ffece4aa6f030559b2d58a3dfa6b48e0e17f32b (from https://pypi.org/simple/msmtools/), version: 1.2.4 2021-07-11T19:37:00,554 Found link https://files.pythonhosted.org/packages/9e/95/ac5dfa19f13379490dbef764a994c6d564b32de2d68e712042af8ff84d2a/msmtools-1.2.5.tar.gz#sha256=e07b73ad9e4e8ef8aca82e6b5bb55f57f8400a65fb2fd656b521f72237a7310a (from https://pypi.org/simple/msmtools/), version: 1.2.5 2021-07-11T19:37:00,554 Found link https://files.pythonhosted.org/packages/e4/1f/366f5c37c1231f87b6789f904e4e68ae47b4b910119da9ec5905e9fa1387/msmtools-1.2.6.tar.gz#sha256=2bfa6c02fff9ed9433c90d7ddc7860a8e2cf881fc67ec1ea5ef93f34a7e03541 (from https://pypi.org/simple/msmtools/), version: 1.2.6 2021-07-11T19:37:00,554 Skipping link: not a file: https://pypi.org/simple/msmtools/ 2021-07-11T19:37:00,575 Given no hashes to check 1 links for project 'msmtools': discarding no candidates 2021-07-11T19:37:00,594 Collecting msmtools==1.1.4 2021-07-11T19:37:00,595 Created temporary directory: /tmp/pip-unpack-toi4kf37 2021-07-11T19:37:00,999 Downloading msmtools-1.1.4.tar.gz (661 kB) 2021-07-11T19:37:01,681 Added msmtools==1.1.4 from https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 to build tracker '/tmp/pip-req-tracker-w4j40lzs' 2021-07-11T19:37:01,683 Running setup.py (path:/tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/setup.py) egg_info for package msmtools 2021-07-11T19:37:01,684 Created temporary directory: /tmp/pip-pip-egg-info-_8crf6fu 2021-07-11T19:37:01,684 Running command python setup.py egg_info 2021-07-11T19:37:02,962 running egg_info 2021-07-11T19:37:02,964 creating /tmp/pip-pip-egg-info-_8crf6fu/msmtools.egg-info 2021-07-11T19:37:02,965 writing /tmp/pip-pip-egg-info-_8crf6fu/msmtools.egg-info/PKG-INFO 2021-07-11T19:37:02,968 writing dependency_links to /tmp/pip-pip-egg-info-_8crf6fu/msmtools.egg-info/dependency_links.txt 2021-07-11T19:37:02,970 writing requirements to /tmp/pip-pip-egg-info-_8crf6fu/msmtools.egg-info/requires.txt 2021-07-11T19:37:03,182 creating /tmp/hasfunction-_6brmpg_/tmp 2021-07-11T19:37:03,182 creating /tmp/hasfunction-_6brmpg_/tmp/hasfunction-_6brmpg_ 2021-07-11T19:37:03,183 cc -c /tmp/hasfunction-_6brmpg_/funcname.c -o /tmp/hasfunction-_6brmpg_/tmp/hasfunction-_6brmpg_/funcname.o 2021-07-11T19:37:03,274 cc /tmp/hasfunction-_6brmpg_/tmp/hasfunction-_6brmpg_/funcname.o -o /tmp/hasfunction-_6brmpg_/a.out 2021-07-11T19:37:03,390 creating /tmp/hasfunction-pqkuxlse/tmp 2021-07-11T19:37:03,390 creating /tmp/hasfunction-pqkuxlse/tmp/hasfunction-pqkuxlse 2021-07-11T19:37:03,391 cc -c /tmp/hasfunction-pqkuxlse/funcname.c -o /tmp/hasfunction-pqkuxlse/tmp/hasfunction-pqkuxlse/funcname.o 2021-07-11T19:37:03,477 cc /tmp/hasfunction-pqkuxlse/tmp/hasfunction-pqkuxlse/funcname.o -lgomp -o /tmp/hasfunction-pqkuxlse/a.out 2021-07-11T19:37:04,595 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/msmtools/estimation/dense/mle_trev.pyx 2021-07-11T19:37:04,595 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T19:37:06,029 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-11T19:37:06,030 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T19:37:07,405 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/msmtools/estimation/dense/sampler_rev.pyx 2021-07-11T19:37:07,406 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T19:37:09,048 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/msmtools/estimation/dense/sampler_revpi.pyx 2021-07-11T19:37:09,048 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T19:37:10,871 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/msmtools/estimation/sparse/mle_trev.pyx 2021-07-11T19:37:10,871 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T19:37:12,368 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-11T19:37:12,368 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-11T19:37:13,756 Compiling msmtools/estimation/dense/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T19:37:13,756 Compiling msmtools/estimation/sparse/mle_trev_given_pi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T19:37:13,756 Compiling msmtools/estimation/dense/mle_trev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T19:37:13,757 Compiling msmtools/estimation/sparse/mle_trev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T19:37:13,757 Compiling msmtools/estimation/dense/sampler_rev.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T19:37:13,757 Compiling msmtools/estimation/dense/sampler_revpi.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd. 2021-07-11T19:37:13,757 [1/6] Cythonizing msmtools/estimation/dense/mle_trev.pyx 2021-07-11T19:37:13,757 [2/6] Cythonizing msmtools/estimation/dense/mle_trev_given_pi.pyx 2021-07-11T19:37:13,757 [3/6] Cythonizing msmtools/estimation/dense/sampler_rev.pyx 2021-07-11T19:37:13,757 [4/6] Cythonizing msmtools/estimation/dense/sampler_revpi.pyx 2021-07-11T19:37:13,757 [5/6] Cythonizing msmtools/estimation/sparse/mle_trev.pyx 2021-07-11T19:37:13,758 [6/6] Cythonizing msmtools/estimation/sparse/mle_trev_given_pi.pyx 2021-07-11T19:37:13,758 /tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/setup.py:155: UserWarning: enabled openmp 2021-07-11T19:37:13,758 warnings.warn('enabled openmp') 2021-07-11T19:37:13,758 writing top-level names to /tmp/pip-pip-egg-info-_8crf6fu/msmtools.egg-info/top_level.txt 2021-07-11T19:37:13,759 writing manifest file '/tmp/pip-pip-egg-info-_8crf6fu/msmtools.egg-info/SOURCES.txt' 2021-07-11T19:37:13,799 reading manifest file '/tmp/pip-pip-egg-info-_8crf6fu/msmtools.egg-info/SOURCES.txt' 2021-07-11T19:37:13,801 reading manifest template 'MANIFEST.in' 2021-07-11T19:37:13,901 warning: no files found matching 'tests/data/*' under directory 'msmtools' 2021-07-11T19:37:13,950 warning: no files found matching 'testfiles/' under directory 'msmtools' 2021-07-11T19:37:14,194 adding license file 'LICENSE.txt' 2021-07-11T19:37:14,203 writing manifest file '/tmp/pip-pip-egg-info-_8crf6fu/msmtools.egg-info/SOURCES.txt' 2021-07-11T19:37:14,431 Source in /tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c has version 1.1.4, which satisfies requirement msmtools==1.1.4 from https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 2021-07-11T19:37:14,432 Removed msmtools==1.1.4 from https://files.pythonhosted.org/packages/d9/96/6b785ff9b8977b4eec9c2c209e05945a2584c76cb3a7886885bcf9c2c163/msmtools-1.1.4.tar.gz#sha256=ce4690748358f9b62dbebca1917426ecd6b6c298f436b90480012b245765de53 from build tracker '/tmp/pip-req-tracker-w4j40lzs' 2021-07-11T19:37:14,436 Created temporary directory: /tmp/pip-unpack-li2flwdy 2021-07-11T19:37:14,437 Building wheels for collected packages: msmtools 2021-07-11T19:37:14,441 Created temporary directory: /tmp/pip-wheel-xneddz4q 2021-07-11T19:37:14,442 Building wheel for msmtools (setup.py): started 2021-07-11T19:37:14,442 Destination directory: /tmp/pip-wheel-xneddz4q 2021-07-11T19:37:14,442 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-xneddz4q 2021-07-11T19:37:15,658 running bdist_wheel 2021-07-11T19:37:15,851 creating /tmp/hasfunction-vxi81yuw/tmp 2021-07-11T19:37:15,851 creating /tmp/hasfunction-vxi81yuw/tmp/hasfunction-vxi81yuw 2021-07-11T19:37:15,851 cc -c /tmp/hasfunction-vxi81yuw/funcname.c -o /tmp/hasfunction-vxi81yuw/tmp/hasfunction-vxi81yuw/funcname.o 2021-07-11T19:37:15,937 cc /tmp/hasfunction-vxi81yuw/tmp/hasfunction-vxi81yuw/funcname.o -o /tmp/hasfunction-vxi81yuw/a.out 2021-07-11T19:37:16,054 creating /tmp/hasfunction-m8qd0_zq/tmp 2021-07-11T19:37:16,055 creating /tmp/hasfunction-m8qd0_zq/tmp/hasfunction-m8qd0_zq 2021-07-11T19:37:16,055 cc -c /tmp/hasfunction-m8qd0_zq/funcname.c -o /tmp/hasfunction-m8qd0_zq/tmp/hasfunction-m8qd0_zq/funcname.o 2021-07-11T19:37:16,142 cc /tmp/hasfunction-m8qd0_zq/tmp/hasfunction-m8qd0_zq/funcname.o -lgomp -o /tmp/hasfunction-m8qd0_zq/a.out 2021-07-11T19:37:17,058 /tmp/pip-wheel-rx9k4hyc/msmtools_0edabf6bd7bf476f82e643989ec44a2c/setup.py:155: UserWarning: enabled openmp 2021-07-11T19:37:17,059 warnings.warn('enabled openmp') 2021-07-11T19:37:17,062 running build 2021-07-11T19:37:17,062 running build_py 2021-07-11T19:37:17,067 creating build 2021-07-11T19:37:17,068 creating build/lib.linux-armv7l-3.9 2021-07-11T19:37:17,068 creating build/lib.linux-armv7l-3.9/msmtools 2021-07-11T19:37:17,070 copying msmtools/_version.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-11T19:37:17,071 copying msmtools/__init__.py -> build/lib.linux-armv7l-3.9/msmtools 2021-07-11T19:37:17,074 creating build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-11T19:37:17,074 copying msmtools/estimation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-11T19:37:17,076 copying msmtools/estimation/api.py -> build/lib.linux-armv7l-3.9/msmtools/estimation 2021-07-11T19:37:17,081 creating build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-11T19:37:17,081 copying msmtools/analysis/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-11T19:37:17,083 copying msmtools/analysis/api.py -> build/lib.linux-armv7l-3.9/msmtools/analysis 2021-07-11T19:37:17,090 creating build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T19:37:17,092 copying msmtools/flux/reactive_flux.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T19:37:17,097 copying msmtools/flux/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T19:37:17,100 copying msmtools/flux/reactive_flux_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T19:37:17,104 copying msmtools/flux/api.py -> build/lib.linux-armv7l-3.9/msmtools/flux 2021-07-11T19:37:17,108 creating build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T19:37:17,109 copying msmtools/util/statistics.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T19:37:17,111 copying msmtools/util/numeric.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T19:37:17,113 copying msmtools/util/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T19:37:17,115 copying msmtools/util/types.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T19:37:17,118 copying msmtools/util/annotators.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T19:37:17,121 copying msmtools/util/exceptions.py -> build/lib.linux-armv7l-3.9/msmtools/util 2021-07-11T19:37:17,124 creating build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-11T19:37:17,124 copying msmtools/generation/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-11T19:37:17,127 copying msmtools/generation/api.py -> build/lib.linux-armv7l-3.9/msmtools/generation 2021-07-11T19:37:17,129 creating build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-11T19:37:17,130 copying msmtools/dtraj/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-11T19:37:17,132 copying msmtools/dtraj/api.py -> build/lib.linux-armv7l-3.9/msmtools/dtraj 2021-07-11T19:37:17,136 creating build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,137 copying msmtools/estimation/sparse/connectivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,139 copying msmtools/estimation/sparse/connectivity.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,141 copying msmtools/estimation/sparse/prior_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,143 copying msmtools/estimation/sparse/effective_counts.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,145 copying msmtools/estimation/sparse/likelihood_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,147 copying msmtools/estimation/sparse/prior.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,148 copying msmtools/estimation/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,150 copying msmtools/estimation/sparse/transition_matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,152 copying msmtools/estimation/sparse/count_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,154 copying msmtools/estimation/sparse/likelihood.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,156 copying msmtools/estimation/sparse/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:17,158 creating build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,159 copying msmtools/estimation/dense/bootstrapping.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,161 copying msmtools/estimation/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,163 copying msmtools/estimation/dense/covariance.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,165 copying msmtools/estimation/dense/covariance_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,167 copying msmtools/estimation/dense/sampler_nrev.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,169 copying msmtools/estimation/dense/tmatrix_sampler.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,171 copying msmtools/estimation/dense/tmatrix_sampler_test.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,173 copying msmtools/estimation/dense/transition_matrix.py -> build/lib.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,176 creating build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,177 copying msmtools/analysis/sparse/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,179 copying msmtools/analysis/sparse/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,182 copying msmtools/analysis/sparse/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,184 copying msmtools/analysis/sparse/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,187 copying msmtools/analysis/sparse/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,189 copying msmtools/analysis/sparse/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,191 copying msmtools/analysis/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,193 copying msmtools/analysis/sparse/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,195 copying msmtools/analysis/sparse/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,197 copying msmtools/analysis/sparse/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,199 copying msmtools/analysis/sparse/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,201 copying msmtools/analysis/sparse/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,203 copying msmtools/analysis/sparse/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,205 copying msmtools/analysis/sparse/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,208 copying msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,210 copying msmtools/analysis/sparse/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/sparse 2021-07-11T19:37:17,214 creating build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,215 copying msmtools/analysis/dense/correlations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,218 copying msmtools/analysis/dense/expectations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,220 copying msmtools/analysis/dense/decomposition_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,222 copying msmtools/analysis/dense/fingerprints_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,225 copying msmtools/analysis/dense/pcca.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,228 copying msmtools/analysis/dense/committor_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,230 copying msmtools/analysis/dense/assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,232 copying msmtools/analysis/dense/hitting_probability_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,234 copying msmtools/analysis/dense/stationary_vector.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,236 copying msmtools/analysis/dense/hitting_probability.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,238 copying msmtools/analysis/dense/correlations_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,240 copying msmtools/analysis/dense/sensitivity_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,243 copying msmtools/analysis/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,245 copying msmtools/analysis/dense/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,247 copying msmtools/analysis/dense/mean_first_passage_time.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,249 copying msmtools/analysis/dense/pcca_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,251 copying msmtools/analysis/dense/sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,254 copying msmtools/analysis/dense/expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,256 copying msmtools/analysis/dense/committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,258 copying msmtools/analysis/dense/assessment_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,260 copying msmtools/analysis/dense/stationary_vector_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,262 copying msmtools/analysis/dense/fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,265 copying msmtools/analysis/dense/mean_first_passage_time_test.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,267 copying msmtools/analysis/dense/decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/dense 2021-07-11T19:37:17,270 creating build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T19:37:17,271 copying msmtools/flux/sparse/pathways.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T19:37:17,274 copying msmtools/flux/sparse/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T19:37:17,276 copying msmtools/flux/sparse/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T19:37:17,278 copying msmtools/flux/sparse/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T19:37:17,280 copying msmtools/flux/sparse/pathways_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/sparse 2021-07-11T19:37:17,282 creating build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-11T19:37:17,283 copying msmtools/flux/dense/tpt.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-11T19:37:17,286 copying msmtools/flux/dense/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-11T19:37:17,288 copying msmtools/flux/dense/tpt_test.py -> build/lib.linux-armv7l-3.9/msmtools/flux/dense 2021-07-11T19:37:17,291 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-11T19:37:17,292 copying msmtools/util/matrix/__init__.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-11T19:37:17,294 copying msmtools/util/matrix/matrix_test.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-11T19:37:17,296 copying msmtools/util/matrix/matrix.py -> build/lib.linux-armv7l-3.9/msmtools/util/matrix 2021-07-11T19:37:17,303 creating build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,304 copying msmtools/analysis/tests/test_fingerprints.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,307 copying msmtools/analysis/tests/test_committor.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,310 copying msmtools/analysis/tests/P_rev_251x251.dat -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,352 copying msmtools/analysis/tests/birth_death_chain.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,355 copying msmtools/analysis/tests/test_sensitivity.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,357 copying msmtools/analysis/tests/test_decomposition.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,360 copying msmtools/analysis/tests/test_expectations.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,363 copying msmtools/analysis/tests/test_assessment.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,365 copying msmtools/analysis/tests/test_mfpt.py -> build/lib.linux-armv7l-3.9/msmtools/analysis/tests 2021-07-11T19:37:17,368 creating build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,369 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,371 copying msmtools/util/matrix/testfiles/matrix_int.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,373 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,375 copying msmtools/util/matrix/testfiles/matrix_float.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,377 copying msmtools/util/matrix/testfiles/matrix_complex.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,379 copying msmtools/util/matrix/testfiles/matrix_float.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,381 copying msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,384 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,386 copying msmtools/util/matrix/testfiles/matrix_complex.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,388 copying msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,390 copying msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,393 copying msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,395 copying msmtools/util/matrix/testfiles/matrix_int.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,397 copying msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,400 copying msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles 2021-07-11T19:37:17,412 running build_ext 2021-07-11T19:37:17,416 building 'msmtools.estimation.dense.mle_trev_given_pi' extension 2021-07-11T19:37:17,417 creating build/temp.linux-armv7l-3.9 2021-07-11T19:37:17,417 creating build/temp.linux-armv7l-3.9/msmtools 2021-07-11T19:37:17,418 creating build/temp.linux-armv7l-3.9/msmtools/estimation 2021-07-11T19:37:17,418 creating build/temp.linux-armv7l-3.9/msmtools/estimation/dense 2021-07-11T19:37:17,419 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o -fopenmp 2021-07-11T19:37:17,823 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -fopenmp 2021-07-11T19:37:18,222 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T19:37:18,223 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T19:37:18,223 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T19:37:18,223 from msmtools/estimation/dense/mle_trev_given_pi.c:638: 2021-07-11T19:37:18,223 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T19:37:18,223 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T19:37:18,223 | ^~~~~~~ 2021-07-11T19:37:21,238 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T19:37:21,383 building 'msmtools.estimation.sparse.mle_trev_given_pi' extension 2021-07-11T19:37:21,384 creating build/temp.linux-armv7l-3.9/msmtools/estimation/sparse 2021-07-11T19:37:21,384 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o -fopenmp 2021-07-11T19:37:21,750 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev_given_pi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -fopenmp 2021-07-11T19:37:22,132 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T19:37:22,133 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T19:37:22,133 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T19:37:22,133 from msmtools/estimation/sparse/mle_trev_given_pi.c:639: 2021-07-11T19:37:22,133 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T19:37:22,133 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T19:37:22,134 | ^~~~~~~ 2021-07-11T19:37:26,406 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev_given_pi.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T19:37:26,541 building 'msmtools.estimation.dense.mle_trev' extension 2021-07-11T19:37:26,542 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o -fopenmp 2021-07-11T19:37:26,688 msmtools/estimation/dense/_mle_trev.c: In function ‘_mle_trev_dense’: 2021-07-11T19:37:26,689 msmtools/estimation/dense/_mle_trev.c:62:27: warning: unused variable ‘value’ [-Wunused-variable] 2021-07-11T19:37:26,689 62 | double rel_err, x_norm, value; 2021-07-11T19:37:26,689 | ^~~~~ 2021-07-11T19:37:26,910 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -fopenmp 2021-07-11T19:37:27,304 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T19:37:27,304 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T19:37:27,304 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T19:37:27,305 from msmtools/estimation/dense/mle_trev.c:638: 2021-07-11T19:37:27,305 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T19:37:27,305 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T19:37:27,305 | ^~~~~~~ 2021-07-11T19:37:30,956 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T19:37:31,084 building 'msmtools.estimation.sparse.mle_trev' extension 2021-07-11T19:37:31,085 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/_mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o -fopenmp 2021-07-11T19:37:31,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/sparse -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/sparse/mle_trev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -fopenmp 2021-07-11T19:37:31,844 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T19:37:31,845 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T19:37:31,845 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T19:37:31,845 from msmtools/estimation/sparse/mle_trev.c:638: 2021-07-11T19:37:31,845 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T19:37:31,846 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T19:37:31,846 | ^~~~~~~ 2021-07-11T19:37:36,220 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/_mle_trev.o build/temp.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T19:37:36,356 building 'msmtools.estimation.dense.sampler_rev' extension 2021-07-11T19:37:36,357 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp 2021-07-11T19:37:36,517 msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’: 2021-07-11T19:37:36,517 msmtools/estimation/dense/_ranlib.c:1567:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-11T19:37:36,517 1567 | int m; 2021-07-11T19:37:36,517 | ^ 2021-07-11T19:37:37,978 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp 2021-07-11T19:37:38,093 msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’: 2021-07-11T19:37:38,094 msmtools/estimation/dense/_rnglib.c:467:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-11T19:37:38,094 467 | int j; 2021-07-11T19:37:38,094 | ^ 2021-07-11T19:37:38,100 msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’: 2021-07-11T19:37:38,100 msmtools/estimation/dense/_rnglib.c:1628:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-11T19:37:38,101 1628 | int i; 2021-07-11T19:37:38,101 | ^ 2021-07-11T19:37:38,101 msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’: 2021-07-11T19:37:38,102 msmtools/estimation/dense/_rnglib.c:1727:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-11T19:37:38,102 1727 | int i; 2021-07-11T19:37:38,102 | ^ 2021-07-11T19:37:38,620 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o -fopenmp 2021-07-11T19:37:39,220 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_rev.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -fopenmp 2021-07-11T19:37:39,612 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T19:37:39,612 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T19:37:39,612 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T19:37:39,612 from msmtools/estimation/dense/sampler_rev.c:640: 2021-07-11T19:37:39,613 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T19:37:39,613 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T19:37:39,613 | ^~~~~~~ 2021-07-11T19:37:47,994 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_rev.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T19:37:48,160 building 'msmtools.estimation.dense.sampler_revpi' extension 2021-07-11T19:37:48,161 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_ranlib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o -fopenmp 2021-07-11T19:37:48,320 msmtools/estimation/dense/_ranlib.c: In function ‘ignpoi’: 2021-07-11T19:37:48,321 msmtools/estimation/dense/_ranlib.c:1567:7: warning: variable ‘m’ set but not used [-Wunused-but-set-variable] 2021-07-11T19:37:48,321 1567 | int m; 2021-07-11T19:37:48,321 | ^ 2021-07-11T19:37:49,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/_rnglib.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o -fopenmp 2021-07-11T19:37:49,902 msmtools/estimation/dense/_rnglib.c: In function ‘cgn_memory’: 2021-07-11T19:37:49,902 msmtools/estimation/dense/_rnglib.c:467:7: warning: unused variable ‘j’ [-Wunused-variable] 2021-07-11T19:37:49,903 467 | int j; 2021-07-11T19:37:49,903 | ^ 2021-07-11T19:37:49,909 msmtools/estimation/dense/_rnglib.c: In function ‘set_initial_seed’: 2021-07-11T19:37:49,909 msmtools/estimation/dense/_rnglib.c:1628:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-11T19:37:49,910 1628 | int i; 2021-07-11T19:37:49,910 | ^ 2021-07-11T19:37:49,910 msmtools/estimation/dense/_rnglib.c: In function ‘set_seed’: 2021-07-11T19:37:49,911 msmtools/estimation/dense/_rnglib.c:1727:7: warning: unused variable ‘i’ [-Wunused-variable] 2021-07-11T19:37:49,911 1727 | int i; 2021-07-11T19:37:49,911 | ^ 2021-07-11T19:37:50,432 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sample_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o -fopenmp 2021-07-11T19:37:50,881 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DUSE_OPENMP -Imsmtools/estimation/dense -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c msmtools/estimation/dense/sampler_revpi.c -o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -fopenmp 2021-07-11T19:37:51,269 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-11T19:37:51,270 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-11T19:37:51,270 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-11T19:37:51,270 from msmtools/estimation/dense/sampler_revpi.c:640: 2021-07-11T19:37:51,270 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-11T19:37:51,270 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-11T19:37:51,271 | ^~~~~~~ 2021-07-11T19:38:00,734 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_ranlib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/_rnglib.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sample_revpi.o build/temp.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.o -o build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -lgomp 2021-07-11T19:38:00,909 installing to build/bdist.linux-armv7l/wheel 2021-07-11T19:38:00,909 running install 2021-07-11T19:38:00,911 running install_lib 2021-07-11T19:38:00,917 creating build/bdist.linux-armv7l 2021-07-11T19:38:00,918 creating build/bdist.linux-armv7l/wheel 2021-07-11T19:38:00,920 creating build/bdist.linux-armv7l/wheel/msmtools 2021-07-11T19:38:00,922 creating build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-11T19:38:00,924 copying build/lib.linux-armv7l-3.9/msmtools/estimation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-11T19:38:00,928 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,929 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,932 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/connectivity.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,935 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,938 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,947 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/effective_counts.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,950 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,952 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/prior.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,955 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,957 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,960 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/count_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,962 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/likelihood.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,965 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,967 copying build/lib.linux-armv7l-3.9/msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/sparse 2021-07-11T19:38:00,978 copying build/lib.linux-armv7l-3.9/msmtools/estimation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation 2021-07-11T19:38:00,983 creating build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:00,984 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/bootstrapping.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:00,987 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,007 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,017 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,035 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,036 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,038 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/covariance_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,040 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/sampler_nrev.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,042 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,044 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/tmatrix_sampler_test.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,046 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/transition_matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,048 copying build/lib.linux-armv7l-3.9/msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/msmtools/estimation/dense 2021-07-11T19:38:01,055 copying build/lib.linux-armv7l-3.9/msmtools/_version.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-11T19:38:01,057 creating build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-11T19:38:01,059 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,060 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,062 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,064 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/P_rev_251x251.dat -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,106 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,108 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,110 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,113 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,115 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,118 copying build/lib.linux-armv7l-3.9/msmtools/analysis/tests/test_mfpt.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/tests 2021-07-11T19:38:01,120 copying build/lib.linux-armv7l-3.9/msmtools/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-11T19:38:01,123 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,123 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,126 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,128 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,131 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,133 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,136 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,138 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,140 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,143 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,145 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,147 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,150 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,152 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,154 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,157 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,159 copying build/lib.linux-armv7l-3.9/msmtools/analysis/sparse/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/sparse 2021-07-11T19:38:01,161 copying build/lib.linux-armv7l-3.9/msmtools/analysis/api.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis 2021-07-11T19:38:01,166 creating build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,167 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,170 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,172 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,175 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,177 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,180 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,183 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,185 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,187 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,189 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/hitting_probability.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,191 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/correlations_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,194 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,196 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,198 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/birth_death_chain.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,200 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,203 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/pcca_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,205 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/sensitivity.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,208 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/expectations.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,211 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/committor.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,213 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/assessment_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,215 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/stationary_vector_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,217 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/fingerprints.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,220 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/mean_first_passage_time_test.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,222 copying build/lib.linux-armv7l-3.9/msmtools/analysis/dense/decomposition.py -> build/bdist.linux-armv7l/wheel/msmtools/analysis/dense 2021-07-11T19:38:01,226 creating build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T19:38:01,227 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T19:38:01,230 copying build/lib.linux-armv7l-3.9/msmtools/flux/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T19:38:01,233 creating build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T19:38:01,234 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T19:38:01,237 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T19:38:01,240 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T19:38:01,242 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T19:38:01,244 copying build/lib.linux-armv7l-3.9/msmtools/flux/sparse/pathways_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/sparse 2021-07-11T19:38:01,246 copying build/lib.linux-armv7l-3.9/msmtools/flux/reactive_flux_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T19:38:01,249 copying build/lib.linux-armv7l-3.9/msmtools/flux/api.py -> build/bdist.linux-armv7l/wheel/msmtools/flux 2021-07-11T19:38:01,252 creating build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-11T19:38:01,253 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-11T19:38:01,256 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-11T19:38:01,258 copying build/lib.linux-armv7l-3.9/msmtools/flux/dense/tpt_test.py -> build/bdist.linux-armv7l/wheel/msmtools/flux/dense 2021-07-11T19:38:01,261 copying build/lib.linux-armv7l-3.9/msmtools/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools 2021-07-11T19:38:01,264 creating build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T19:38:01,265 copying build/lib.linux-armv7l-3.9/msmtools/util/statistics.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T19:38:01,267 copying build/lib.linux-armv7l-3.9/msmtools/util/numeric.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T19:38:01,270 copying build/lib.linux-armv7l-3.9/msmtools/util/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T19:38:01,272 copying build/lib.linux-armv7l-3.9/msmtools/util/types.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T19:38:01,275 copying build/lib.linux-armv7l-3.9/msmtools/util/annotators.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T19:38:01,277 copying build/lib.linux-armv7l-3.9/msmtools/util/exceptions.py -> build/bdist.linux-armv7l/wheel/msmtools/util 2021-07-11T19:38:01,280 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-11T19:38:01,282 creating build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,283 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,285 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,287 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,289 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,291 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,293 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_float.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,295 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,297 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,299 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_complex.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,301 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,304 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,306 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,308 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/matrix_int.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,310 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_float.coo.npy -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,312 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/testfiles/spmatrix_int_reference.dat -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix/testfiles 2021-07-11T19:38:01,314 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-11T19:38:01,316 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix_test.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-11T19:38:01,318 copying build/lib.linux-armv7l-3.9/msmtools/util/matrix/matrix.py -> build/bdist.linux-armv7l/wheel/msmtools/util/matrix 2021-07-11T19:38:01,321 creating build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-11T19:38:01,322 copying build/lib.linux-armv7l-3.9/msmtools/generation/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-11T19:38:01,324 copying build/lib.linux-armv7l-3.9/msmtools/generation/api.py -> build/bdist.linux-armv7l/wheel/msmtools/generation 2021-07-11T19:38:01,328 creating build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-11T19:38:01,328 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/__init__.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-11T19:38:01,330 copying build/lib.linux-armv7l-3.9/msmtools/dtraj/api.py -> build/bdist.linux-armv7l/wheel/msmtools/dtraj 2021-07-11T19:38:01,333 running install_egg_info 2021-07-11T19:38:01,355 running egg_info 2021-07-11T19:38:01,355 writing msmtools.egg-info/PKG-INFO 2021-07-11T19:38:01,358 writing dependency_links to msmtools.egg-info/dependency_links.txt 2021-07-11T19:38:01,359 writing requirements to msmtools.egg-info/requires.txt 2021-07-11T19:38:01,361 writing top-level names to msmtools.egg-info/top_level.txt 2021-07-11T19:38:01,395 reading manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-11T19:38:01,409 reading manifest template 'MANIFEST.in' 2021-07-11T19:38:01,509 warning: no files found matching 'tests/data/*' under directory 'msmtools' 2021-07-11T19:38:01,559 warning: no files found matching 'testfiles/' under directory 'msmtools' 2021-07-11T19:38:01,818 adding license file 'LICENSE.txt' 2021-07-11T19:38:01,828 writing manifest file 'msmtools.egg-info/SOURCES.txt' 2021-07-11T19:38:01,834 Copying msmtools.egg-info to build/bdist.linux-armv7l/wheel/msmtools-1.1.4-py3.9.egg-info 2021-07-11T19:38:01,851 running install_scripts 2021-07-11T19:38:01,903 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-11T19:38:01,909 creating build/bdist.linux-armv7l/wheel/msmtools-1.1.4.dist-info/WHEEL 2021-07-11T19:38:01,912 creating '/tmp/pip-wheel-xneddz4q/msmtools-1.1.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-11T19:38:01,915 adding 'msmtools/__init__.py' 2021-07-11T19:38:01,916 adding 'msmtools/_version.py' 2021-07-11T19:38:01,918 adding 'msmtools/analysis/__init__.py' 2021-07-11T19:38:01,925 adding 'msmtools/analysis/api.py' 2021-07-11T19:38:01,927 adding 'msmtools/analysis/dense/__init__.py' 2021-07-11T19:38:01,929 adding 'msmtools/analysis/dense/assessment.py' 2021-07-11T19:38:01,930 adding 'msmtools/analysis/dense/assessment_test.py' 2021-07-11T19:38:01,932 adding 'msmtools/analysis/dense/birth_death_chain.py' 2021-07-11T19:38:01,934 adding 'msmtools/analysis/dense/committor.py' 2021-07-11T19:38:01,936 adding 'msmtools/analysis/dense/committor_test.py' 2021-07-11T19:38:01,937 adding 'msmtools/analysis/dense/correlations.py' 2021-07-11T19:38:01,939 adding 'msmtools/analysis/dense/correlations_test.py' 2021-07-11T19:38:01,941 adding 'msmtools/analysis/dense/decomposition.py' 2021-07-11T19:38:01,943 adding 'msmtools/analysis/dense/decomposition_test.py' 2021-07-11T19:38:01,945 adding 'msmtools/analysis/dense/expectations.py' 2021-07-11T19:38:01,947 adding 'msmtools/analysis/dense/expectations_test.py' 2021-07-11T19:38:01,949 adding 'msmtools/analysis/dense/fingerprints.py' 2021-07-11T19:38:01,951 adding 'msmtools/analysis/dense/fingerprints_test.py' 2021-07-11T19:38:01,952 adding 'msmtools/analysis/dense/hitting_probability.py' 2021-07-11T19:38:01,954 adding 'msmtools/analysis/dense/hitting_probability_test.py' 2021-07-11T19:38:01,955 adding 'msmtools/analysis/dense/mean_first_passage_time.py' 2021-07-11T19:38:01,957 adding 'msmtools/analysis/dense/mean_first_passage_time_test.py' 2021-07-11T19:38:01,960 adding 'msmtools/analysis/dense/pcca.py' 2021-07-11T19:38:01,961 adding 'msmtools/analysis/dense/pcca_test.py' 2021-07-11T19:38:01,964 adding 'msmtools/analysis/dense/sensitivity.py' 2021-07-11T19:38:01,965 adding 'msmtools/analysis/dense/sensitivity_test.py' 2021-07-11T19:38:01,967 adding 'msmtools/analysis/dense/stationary_vector.py' 2021-07-11T19:38:01,968 adding 'msmtools/analysis/dense/stationary_vector_test.py' 2021-07-11T19:38:01,971 adding 'msmtools/analysis/sparse/__init__.py' 2021-07-11T19:38:01,972 adding 'msmtools/analysis/sparse/assessment.py' 2021-07-11T19:38:01,974 adding 'msmtools/analysis/sparse/assessment_test.py' 2021-07-11T19:38:01,976 adding 'msmtools/analysis/sparse/birth_death_chain.py' 2021-07-11T19:38:01,977 adding 'msmtools/analysis/sparse/committor.py' 2021-07-11T19:38:01,979 adding 'msmtools/analysis/sparse/committor_test.py' 2021-07-11T19:38:01,981 adding 'msmtools/analysis/sparse/decomposition.py' 2021-07-11T19:38:01,983 adding 'msmtools/analysis/sparse/decomposition_test.py' 2021-07-11T19:38:01,985 adding 'msmtools/analysis/sparse/expectations.py' 2021-07-11T19:38:01,986 adding 'msmtools/analysis/sparse/expectations_test.py' 2021-07-11T19:38:01,988 adding 'msmtools/analysis/sparse/fingerprints.py' 2021-07-11T19:38:01,990 adding 'msmtools/analysis/sparse/fingerprints_test.py' 2021-07-11T19:38:01,992 adding 'msmtools/analysis/sparse/mean_first_passage_time.py' 2021-07-11T19:38:01,993 adding 'msmtools/analysis/sparse/mean_first_passage_time_test.py' 2021-07-11T19:38:01,995 adding 'msmtools/analysis/sparse/stationary_vector.py' 2021-07-11T19:38:01,996 adding 'msmtools/analysis/sparse/stationary_vector_test.py' 2021-07-11T19:38:02,076 adding 'msmtools/analysis/tests/P_rev_251x251.dat' 2021-07-11T19:38:02,090 adding 'msmtools/analysis/tests/birth_death_chain.py' 2021-07-11T19:38:02,092 adding 'msmtools/analysis/tests/test_assessment.py' 2021-07-11T19:38:02,093 adding 'msmtools/analysis/tests/test_committor.py' 2021-07-11T19:38:02,095 adding 'msmtools/analysis/tests/test_decomposition.py' 2021-07-11T19:38:02,097 adding 'msmtools/analysis/tests/test_expectations.py' 2021-07-11T19:38:02,099 adding 'msmtools/analysis/tests/test_fingerprints.py' 2021-07-11T19:38:02,101 adding 'msmtools/analysis/tests/test_mfpt.py' 2021-07-11T19:38:02,103 adding 'msmtools/analysis/tests/test_sensitivity.py' 2021-07-11T19:38:02,105 adding 'msmtools/dtraj/__init__.py' 2021-07-11T19:38:02,107 adding 'msmtools/dtraj/api.py' 2021-07-11T19:38:02,109 adding 'msmtools/estimation/__init__.py' 2021-07-11T19:38:02,115 adding 'msmtools/estimation/api.py' 2021-07-11T19:38:02,117 adding 'msmtools/estimation/dense/__init__.py' 2021-07-11T19:38:02,119 adding 'msmtools/estimation/dense/bootstrapping.py' 2021-07-11T19:38:02,120 adding 'msmtools/estimation/dense/covariance.py' 2021-07-11T19:38:02,122 adding 'msmtools/estimation/dense/covariance_test.py' 2021-07-11T19:38:02,177 adding 'msmtools/estimation/dense/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T19:38:02,223 adding 'msmtools/estimation/dense/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T19:38:02,226 adding 'msmtools/estimation/dense/sampler_nrev.py' 2021-07-11T19:38:02,374 adding 'msmtools/estimation/dense/sampler_rev.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T19:38:02,533 adding 'msmtools/estimation/dense/sampler_revpi.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T19:38:02,541 adding 'msmtools/estimation/dense/tmatrix_sampler.py' 2021-07-11T19:38:02,542 adding 'msmtools/estimation/dense/tmatrix_sampler_test.py' 2021-07-11T19:38:02,543 adding 'msmtools/estimation/dense/transition_matrix.py' 2021-07-11T19:38:02,545 adding 'msmtools/estimation/sparse/__init__.py' 2021-07-11T19:38:02,547 adding 'msmtools/estimation/sparse/connectivity.py' 2021-07-11T19:38:02,548 adding 'msmtools/estimation/sparse/connectivity_test.py' 2021-07-11T19:38:02,549 adding 'msmtools/estimation/sparse/count_matrix.py' 2021-07-11T19:38:02,551 adding 'msmtools/estimation/sparse/effective_counts.py' 2021-07-11T19:38:02,552 adding 'msmtools/estimation/sparse/likelihood.py' 2021-07-11T19:38:02,554 adding 'msmtools/estimation/sparse/likelihood_test.py' 2021-07-11T19:38:02,615 adding 'msmtools/estimation/sparse/mle_trev.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T19:38:02,676 adding 'msmtools/estimation/sparse/mle_trev_given_pi.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T19:38:02,680 adding 'msmtools/estimation/sparse/prior.py' 2021-07-11T19:38:02,681 adding 'msmtools/estimation/sparse/prior_test.py' 2021-07-11T19:38:02,682 adding 'msmtools/estimation/sparse/transition_matrix.py' 2021-07-11T19:38:02,684 adding 'msmtools/estimation/sparse/transition_matrix_test.py' 2021-07-11T19:38:02,685 adding 'msmtools/flux/__init__.py' 2021-07-11T19:38:02,688 adding 'msmtools/flux/api.py' 2021-07-11T19:38:02,690 adding 'msmtools/flux/reactive_flux.py' 2021-07-11T19:38:02,691 adding 'msmtools/flux/reactive_flux_test.py' 2021-07-11T19:38:02,693 adding 'msmtools/flux/dense/__init__.py' 2021-07-11T19:38:02,695 adding 'msmtools/flux/dense/tpt.py' 2021-07-11T19:38:02,697 adding 'msmtools/flux/dense/tpt_test.py' 2021-07-11T19:38:02,699 adding 'msmtools/flux/sparse/__init__.py' 2021-07-11T19:38:02,701 adding 'msmtools/flux/sparse/pathways.py' 2021-07-11T19:38:02,702 adding 'msmtools/flux/sparse/pathways_test.py' 2021-07-11T19:38:02,704 adding 'msmtools/flux/sparse/tpt.py' 2021-07-11T19:38:02,705 adding 'msmtools/flux/sparse/tpt_test.py' 2021-07-11T19:38:02,707 adding 'msmtools/generation/__init__.py' 2021-07-11T19:38:02,709 adding 'msmtools/generation/api.py' 2021-07-11T19:38:02,711 adding 'msmtools/util/__init__.py' 2021-07-11T19:38:02,713 adding 'msmtools/util/annotators.py' 2021-07-11T19:38:02,714 adding 'msmtools/util/exceptions.py' 2021-07-11T19:38:02,716 adding 'msmtools/util/numeric.py' 2021-07-11T19:38:02,718 adding 'msmtools/util/statistics.py' 2021-07-11T19:38:02,720 adding 'msmtools/util/types.py' 2021-07-11T19:38:02,722 adding 'msmtools/util/matrix/__init__.py' 2021-07-11T19:38:02,724 adding 'msmtools/util/matrix/matrix.py' 2021-07-11T19:38:02,726 adding 'msmtools/util/matrix/matrix_test.py' 2021-07-11T19:38:02,728 adding 'msmtools/util/matrix/testfiles/matrix_complex.dat' 2021-07-11T19:38:02,730 adding 'msmtools/util/matrix/testfiles/matrix_complex.npy' 2021-07-11T19:38:02,731 adding 'msmtools/util/matrix/testfiles/matrix_float.dat' 2021-07-11T19:38:02,732 adding 'msmtools/util/matrix/testfiles/matrix_float.npy' 2021-07-11T19:38:02,733 adding 'msmtools/util/matrix/testfiles/matrix_int.dat' 2021-07-11T19:38:02,734 adding 'msmtools/util/matrix/testfiles/matrix_int.npy' 2021-07-11T19:38:02,735 adding 'msmtools/util/matrix/testfiles/spmatrix_complex.coo.dat' 2021-07-11T19:38:02,737 adding 'msmtools/util/matrix/testfiles/spmatrix_complex.coo.npy' 2021-07-11T19:38:02,738 adding 'msmtools/util/matrix/testfiles/spmatrix_complex_reference.dat' 2021-07-11T19:38:02,739 adding 'msmtools/util/matrix/testfiles/spmatrix_float.coo.dat' 2021-07-11T19:38:02,740 adding 'msmtools/util/matrix/testfiles/spmatrix_float.coo.npy' 2021-07-11T19:38:02,742 adding 'msmtools/util/matrix/testfiles/spmatrix_float_reference.dat' 2021-07-11T19:38:02,743 adding 'msmtools/util/matrix/testfiles/spmatrix_int.coo.dat' 2021-07-11T19:38:02,744 adding 'msmtools/util/matrix/testfiles/spmatrix_int.coo.npy' 2021-07-11T19:38:02,745 adding 'msmtools/util/matrix/testfiles/spmatrix_int_reference.dat' 2021-07-11T19:38:02,749 adding 'msmtools-1.1.4.dist-info/LICENSE.txt' 2021-07-11T19:38:02,750 adding 'msmtools-1.1.4.dist-info/METADATA' 2021-07-11T19:38:02,751 adding 'msmtools-1.1.4.dist-info/WHEEL' 2021-07-11T19:38:02,752 adding 'msmtools-1.1.4.dist-info/pbr.json' 2021-07-11T19:38:02,753 adding 'msmtools-1.1.4.dist-info/top_level.txt' 2021-07-11T19:38:02,755 adding 'msmtools-1.1.4.dist-info/RECORD' 2021-07-11T19:38:02,783 removing build/bdist.linux-armv7l/wheel 2021-07-11T19:38:02,971 Building wheel for msmtools (setup.py): finished with status 'done' 2021-07-11T19:38:02,991 Created wheel for msmtools: filename=msmtools-1.1.4-cp39-cp39-linux_armv7l.whl size=1340038 sha256=9add3913ff6454f38c606da63e3c3ba41f365079c861847445c5b3e11c27e4d6 2021-07-11T19:38:02,991 Stored in directory: /tmp/pip-ephem-wheel-cache-o458vwxy/wheels/f8/82/a2/cf412d56284e5f0f6101057ebe273ff9963434dd64a25160b0 2021-07-11T19:38:03,008 Successfully built msmtools 2021-07-11T19:38:03,058 Removed build tracker: '/tmp/pip-req-tracker-w4j40lzs'