2021-07-11T21:15:04,526 Created temporary directory: /tmp/pip-ephem-wheel-cache-j053ubif 2021-07-11T21:15:04,530 Created temporary directory: /tmp/pip-req-tracker-5sw02oyq 2021-07-11T21:15:04,530 Initialized build tracking at /tmp/pip-req-tracker-5sw02oyq 2021-07-11T21:15:04,531 Created build tracker: /tmp/pip-req-tracker-5sw02oyq 2021-07-11T21:15:04,531 Entered build tracker: /tmp/pip-req-tracker-5sw02oyq 2021-07-11T21:15:04,532 Created temporary directory: /tmp/pip-wheel-bkehf8br 2021-07-11T21:15:04,566 1 location(s) to search for versions of sshmm: 2021-07-11T21:15:04,566 * https://pypi.org/simple/sshmm/ 2021-07-11T21:15:04,566 Fetching project page and analyzing links: https://pypi.org/simple/sshmm/ 2021-07-11T21:15:04,567 Getting page https://pypi.org/simple/sshmm/ 2021-07-11T21:15:04,568 Found index url https://pypi.org/simple 2021-07-11T21:15:04,772 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/4d/4e5c9ec7dbdb161e2596052e03f9e28b749a3ea81e27334ed1097c0b7f52/sshmm-1.0.0b1-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=cf4f7255b766849c8521510dd9a1c87009630202593d7e2eae5e2dea95625b88 (from https://pypi.org/simple/sshmm/) 2021-07-11T21:15:04,773 Found link https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b (from https://pypi.org/simple/sshmm/), version: 1.0.0b1 2021-07-11T21:15:04,773 Found link https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 (from https://pypi.org/simple/sshmm/), version: 1.0.0b2 2021-07-11T21:15:04,774 Found link https://files.pythonhosted.org/packages/22/24/736193beb8c98f3d0d2d65163ea1cb195ef0ef8748b31939c64722ecdf53/sshmm-1.0.0b3.tar.gz#sha256=dde85e5c49a4e447b2fe2cb0a3b4c95f2e1c50fbc8e9306f0855522deefe6db6 (from https://pypi.org/simple/sshmm/), version: 1.0.0b3 2021-07-11T21:15:04,774 Found link https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 (from https://pypi.org/simple/sshmm/), version: 1.0.0b4 2021-07-11T21:15:04,774 Found link https://files.pythonhosted.org/packages/e2/72/ce482d27cd639d9a0ec3b68ea03a3944b82cbccaf1cc1100c910fe83cf9a/sshmm-1.0.0.tar.gz#sha256=dd45c82082c1598305f9f10974338eb654189736288301384c7fe4332db9de55 (from https://pypi.org/simple/sshmm/), version: 1.0.0 2021-07-11T21:15:04,774 Found link https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa (from https://pypi.org/simple/sshmm/), version: 1.0.1 2021-07-11T21:15:04,775 Found link https://files.pythonhosted.org/packages/a0/74/f289f8598a645cfc2db58a5b591750f6cdc8b080423e57b4263557f4cdab/sshmm-1.0.2.tar.gz#sha256=95b299baaf2a20b3a214026ddb5be7f827b7754d5760807a2f81e7262011e7f5 (from https://pypi.org/simple/sshmm/), version: 1.0.2 2021-07-11T21:15:04,775 Found link https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f (from https://pypi.org/simple/sshmm/), version: 1.0.4 2021-07-11T21:15:04,775 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6d/93/d1879de96986253da47c110755bcc15eda8acfe94c3f5e7185dc6a642c0c/sshmm-1.0.5-py2.7-linux-x86_64.egg#sha256=86d70f06238168852b0342ea733f6893e8baa49be151aab77d6f49cbab6ff227 (from https://pypi.org/simple/sshmm/) 2021-07-11T21:15:04,775 Found link https://files.pythonhosted.org/packages/e1/1c/d8d53d575807110582f43da63707146463dd1ba6402f93004d6750f17223/sshmm-1.0.5.tar.gz#sha256=37192b827f23fa07812a70eb5cba98beaa908e6ac91182a7a37fc782f9a76d4b (from https://pypi.org/simple/sshmm/), version: 1.0.5 2021-07-11T21:15:04,776 Found link https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 (from https://pypi.org/simple/sshmm/), version: 1.0.6 2021-07-11T21:15:04,776 Found link https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 (from https://pypi.org/simple/sshmm/), version: 1.0.7 2021-07-11T21:15:04,776 Skipping link: not a file: https://pypi.org/simple/sshmm/ 2021-07-11T21:15:04,779 Given no hashes to check 1 links for project 'sshmm': discarding no candidates 2021-07-11T21:15:04,798 Collecting sshmm==1.0.0b1 2021-07-11T21:15:04,799 Created temporary directory: /tmp/pip-unpack-0ij8zzfc 2021-07-11T21:15:05,194 Downloading sshmm-1.0.0b1.tar.gz (100 kB) 2021-07-11T21:15:05,313 Added sshmm==1.0.0b1 from https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b to build tracker '/tmp/pip-req-tracker-5sw02oyq' 2021-07-11T21:15:05,314 Running setup.py (path:/tmp/pip-wheel-bkehf8br/sshmm_31f134b32be340fbbe8c2919611446de/setup.py) egg_info for package sshmm 2021-07-11T21:15:05,315 Created temporary directory: /tmp/pip-pip-egg-info-2sw17yv8 2021-07-11T21:15:05,316 Running command python setup.py egg_info 2021-07-11T21:15:06,278 running egg_info 2021-07-11T21:15:06,280 creating /tmp/pip-pip-egg-info-2sw17yv8/sshmm.egg-info 2021-07-11T21:15:06,281 writing /tmp/pip-pip-egg-info-2sw17yv8/sshmm.egg-info/PKG-INFO 2021-07-11T21:15:06,284 writing dependency_links to /tmp/pip-pip-egg-info-2sw17yv8/sshmm.egg-info/dependency_links.txt 2021-07-11T21:15:06,286 writing requirements to /tmp/pip-pip-egg-info-2sw17yv8/sshmm.egg-info/requires.txt 2021-07-11T21:15:06,286 writing top-level names to /tmp/pip-pip-egg-info-2sw17yv8/sshmm.egg-info/top_level.txt 2021-07-11T21:15:06,288 writing manifest file '/tmp/pip-pip-egg-info-2sw17yv8/sshmm.egg-info/SOURCES.txt' 2021-07-11T21:15:06,642 reading manifest file '/tmp/pip-pip-egg-info-2sw17yv8/sshmm.egg-info/SOURCES.txt' 2021-07-11T21:15:06,646 writing manifest file '/tmp/pip-pip-egg-info-2sw17yv8/sshmm.egg-info/SOURCES.txt' 2021-07-11T21:15:06,718 Source in /tmp/pip-wheel-bkehf8br/sshmm_31f134b32be340fbbe8c2919611446de has version 1.0.0b1, which satisfies requirement sshmm==1.0.0b1 from https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b 2021-07-11T21:15:06,719 Removed sshmm==1.0.0b1 from https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b from build tracker '/tmp/pip-req-tracker-5sw02oyq' 2021-07-11T21:15:06,724 Created temporary directory: /tmp/pip-unpack-1888o9fv 2021-07-11T21:15:06,724 Building wheels for collected packages: sshmm 2021-07-11T21:15:06,728 Created temporary directory: /tmp/pip-wheel-mdgvjk51 2021-07-11T21:15:06,729 Building wheel for sshmm (setup.py): started 2021-07-11T21:15:06,729 Destination directory: /tmp/pip-wheel-mdgvjk51 2021-07-11T21:15:06,729 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-bkehf8br/sshmm_31f134b32be340fbbe8c2919611446de/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-bkehf8br/sshmm_31f134b32be340fbbe8c2919611446de/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-mdgvjk51 2021-07-11T21:15:07,743 running bdist_wheel 2021-07-11T21:15:07,905 running build 2021-07-11T21:15:07,906 running build_py 2021-07-11T21:15:08,069 creating build 2021-07-11T21:15:08,069 creating build/lib.linux-armv7l-3.9 2021-07-11T21:15:08,071 creating build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,075 copying sshmm/pwm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,086 copying sshmm/simple_queue.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,094 copying sshmm/structure_prediction.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,101 copying sshmm/seq_hmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,104 copying sshmm/sequence_container.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,108 copying sshmm/setup.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,110 copying sshmm/MyHMM.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,115 copying sshmm/__init__.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,117 copying sshmm/seqstructhmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,123 creating build/lib.linux-armv7l-3.9/sshmm/img 2021-07-11T21:15:08,124 copying sshmm/img/U.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-11T21:15:08,127 copying sshmm/img/A.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-11T21:15:08,132 copying sshmm/img/T.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-11T21:15:08,135 copying sshmm/img/G.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-11T21:15:08,139 copying sshmm/img/C.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-11T21:15:08,145 running build_ext 2021-07-11T21:15:08,152 building 'cEstimate' extension 2021-07-11T21:15:08,152 creating build/temp.linux-armv7l-3.9 2021-07-11T21:15:08,153 creating build/temp.linux-armv7l-3.9/sshmm 2021-07-11T21:15:08,153 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c sshmm/cEstimate.c -o build/temp.linux-armv7l-3.9/sshmm/cEstimate.o 2021-07-11T21:15:08,601 sshmm/cEstimate.c: In function ‘__pyx_pf_12seqstructhmm_9cEstimate_cEstimate’: 2021-07-11T21:15:08,601 sshmm/cEstimate.c:926:17: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration] 2021-07-11T21:15:08,602 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-11T21:15:08,602 | ^~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,602 sshmm/cEstimate.c:926:15: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-11T21:15:08,602 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-11T21:15:08,602 | ^ 2021-07-11T21:15:08,617 sshmm/cEstimate.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-11T21:15:08,618 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,618 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,619 | ^ 2021-07-11T21:15:08,619 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,619 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,619 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,619 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T21:15:08,619 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T21:15:08,619 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,620 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,620 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,620 | ^ 2021-07-11T21:15:08,620 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,621 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,621 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,621 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-11T21:15:08,621 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-11T21:15:08,621 | ^~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,621 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,621 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,621 | ^ 2021-07-11T21:15:08,622 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,622 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,622 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,622 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T21:15:08,622 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T21:15:08,622 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,622 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,623 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,623 | ^ 2021-07-11T21:15:08,623 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,623 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,623 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,623 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T21:15:08,623 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T21:15:08,623 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,624 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,624 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,624 | ^ 2021-07-11T21:15:08,624 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,624 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,624 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,624 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-11T21:15:08,624 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-11T21:15:08,625 | ^~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,625 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,625 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,625 | ^ 2021-07-11T21:15:08,625 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,625 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,625 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,626 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T21:15:08,626 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T21:15:08,626 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,627 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,627 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,627 | ^ 2021-07-11T21:15:08,627 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,627 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,627 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,627 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T21:15:08,628 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T21:15:08,628 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,628 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,628 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,628 | ^ 2021-07-11T21:15:08,628 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,628 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,629 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,629 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-11T21:15:08,629 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-11T21:15:08,629 | ^~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,629 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,629 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,629 | ^ 2021-07-11T21:15:08,630 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,630 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,630 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,630 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T21:15:08,630 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T21:15:08,630 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,630 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,631 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,631 | ^ 2021-07-11T21:15:08,631 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,631 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,631 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,631 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T21:15:08,631 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T21:15:08,631 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,632 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,632 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,632 | ^ 2021-07-11T21:15:08,632 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,632 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,632 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,632 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-11T21:15:08,632 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-11T21:15:08,633 | ^~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:08,633 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-11T21:15:08,633 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-11T21:15:08,633 | ^ 2021-07-11T21:15:08,633 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-11T21:15:08,633 from /usr/include/python3.9/Python.h:97, 2021-07-11T21:15:08,633 from sshmm/cEstimate.c:24: 2021-07-11T21:15:08,634 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-11T21:15:08,634 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-11T21:15:08,634 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-11T21:15:09,808 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/sshmm/cEstimate.o -o build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so 2021-07-11T21:15:09,920 running build_scripts 2021-07-11T21:15:09,920 creating build/scripts-3.9 2021-07-11T21:15:09,921 copying and adjusting bin/preprocess_dataset -> build/scripts-3.9 2021-07-11T21:15:09,924 copying and adjusting bin/train_seqstructhmm -> build/scripts-3.9 2021-07-11T21:15:09,926 copying and adjusting bin/batch_seqstructhmm -> build/scripts-3.9 2021-07-11T21:15:09,927 changing mode of build/scripts-3.9/preprocess_dataset from 644 to 755 2021-07-11T21:15:09,928 changing mode of build/scripts-3.9/train_seqstructhmm from 644 to 755 2021-07-11T21:15:09,928 changing mode of build/scripts-3.9/batch_seqstructhmm from 644 to 755 2021-07-11T21:15:09,937 installing to build/bdist.linux-armv7l/wheel 2021-07-11T21:15:09,937 running install 2021-07-11T21:15:09,938 running install_lib 2021-07-11T21:15:09,943 creating build/bdist.linux-armv7l 2021-07-11T21:15:09,943 creating build/bdist.linux-armv7l/wheel 2021-07-11T21:15:09,946 creating build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,947 copying build/lib.linux-armv7l-3.9/sshmm/pwm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,949 copying build/lib.linux-armv7l-3.9/sshmm/simple_queue.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,951 copying build/lib.linux-armv7l-3.9/sshmm/structure_prediction.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,953 copying build/lib.linux-armv7l-3.9/sshmm/seq_hmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,955 copying build/lib.linux-armv7l-3.9/sshmm/sequence_container.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,957 copying build/lib.linux-armv7l-3.9/sshmm/setup.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,959 creating build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-11T21:15:09,960 copying build/lib.linux-armv7l-3.9/sshmm/img/U.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-11T21:15:09,962 copying build/lib.linux-armv7l-3.9/sshmm/img/A.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-11T21:15:09,965 copying build/lib.linux-armv7l-3.9/sshmm/img/T.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-11T21:15:09,967 copying build/lib.linux-armv7l-3.9/sshmm/img/G.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-11T21:15:09,970 copying build/lib.linux-armv7l-3.9/sshmm/img/C.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-11T21:15:09,972 copying build/lib.linux-armv7l-3.9/sshmm/MyHMM.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,976 copying build/lib.linux-armv7l-3.9/sshmm/__init__.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,978 copying build/lib.linux-armv7l-3.9/sshmm/seqstructhmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-11T21:15:09,981 copying build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-11T21:15:09,986 running install_egg_info 2021-07-11T21:15:10,009 running egg_info 2021-07-11T21:15:10,010 writing sshmm.egg-info/PKG-INFO 2021-07-11T21:15:10,011 writing dependency_links to sshmm.egg-info/dependency_links.txt 2021-07-11T21:15:10,013 writing requirements to sshmm.egg-info/requires.txt 2021-07-11T21:15:10,014 writing top-level names to sshmm.egg-info/top_level.txt 2021-07-11T21:15:10,019 reading manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-11T21:15:10,024 writing manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-11T21:15:10,025 Copying sshmm.egg-info to build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1-py3.9.egg-info 2021-07-11T21:15:10,038 running install_scripts 2021-07-11T21:15:10,098 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1.data 2021-07-11T21:15:10,098 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1.data/scripts 2021-07-11T21:15:10,099 copying build/scripts-3.9/train_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1.data/scripts 2021-07-11T21:15:10,101 copying build/scripts-3.9/preprocess_dataset -> build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1.data/scripts 2021-07-11T21:15:10,104 copying build/scripts-3.9/batch_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1.data/scripts 2021-07-11T21:15:10,105 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1.data/scripts/train_seqstructhmm to 755 2021-07-11T21:15:10,106 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1.data/scripts/preprocess_dataset to 755 2021-07-11T21:15:10,106 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1.data/scripts/batch_seqstructhmm to 755 2021-07-11T21:15:10,129 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.0b1.dist-info/WHEEL 2021-07-11T21:15:10,131 creating '/tmp/pip-wheel-mdgvjk51/sshmm-1.0.0b1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-11T21:15:10,151 adding 'cEstimate.cpython-39-arm-linux-gnueabihf.so' 2021-07-11T21:15:10,156 adding 'sshmm/MyHMM.py' 2021-07-11T21:15:10,158 adding 'sshmm/__init__.py' 2021-07-11T21:15:10,159 adding 'sshmm/pwm.py' 2021-07-11T21:15:10,161 adding 'sshmm/seq_hmm.py' 2021-07-11T21:15:10,163 adding 'sshmm/seqstructhmm.py' 2021-07-11T21:15:10,166 adding 'sshmm/sequence_container.py' 2021-07-11T21:15:10,167 adding 'sshmm/setup.py' 2021-07-11T21:15:10,168 adding 'sshmm/simple_queue.py' 2021-07-11T21:15:10,169 adding 'sshmm/structure_prediction.py' 2021-07-11T21:15:10,173 adding 'sshmm/img/A.png' 2021-07-11T21:15:10,175 adding 'sshmm/img/C.png' 2021-07-11T21:15:10,178 adding 'sshmm/img/G.png' 2021-07-11T21:15:10,179 adding 'sshmm/img/T.png' 2021-07-11T21:15:10,181 adding 'sshmm/img/U.png' 2021-07-11T21:15:10,184 adding 'sshmm-1.0.0b1.data/scripts/batch_seqstructhmm' 2021-07-11T21:15:10,186 adding 'sshmm-1.0.0b1.data/scripts/preprocess_dataset' 2021-07-11T21:15:10,187 adding 'sshmm-1.0.0b1.data/scripts/train_seqstructhmm' 2021-07-11T21:15:10,189 adding 'sshmm-1.0.0b1.dist-info/METADATA' 2021-07-11T21:15:10,190 adding 'sshmm-1.0.0b1.dist-info/WHEEL' 2021-07-11T21:15:10,191 adding 'sshmm-1.0.0b1.dist-info/top_level.txt' 2021-07-11T21:15:10,192 adding 'sshmm-1.0.0b1.dist-info/RECORD' 2021-07-11T21:15:10,195 removing build/bdist.linux-armv7l/wheel 2021-07-11T21:15:10,288 Building wheel for sshmm (setup.py): finished with status 'done' 2021-07-11T21:15:10,292 Created wheel for sshmm: filename=sshmm-1.0.0b1-cp39-cp39-linux_armv7l.whl size=126126 sha256=d94397c045b8b414b46c0ac3c4d82df6383e290f45f2c19dd86b7fbaaba786d0 2021-07-11T21:15:10,292 Stored in directory: /tmp/pip-ephem-wheel-cache-j053ubif/wheels/3b/1f/65/f5b4b37e87517e64ca39a15c234e9b93332decc620e8fb20d4 2021-07-11T21:15:10,301 Successfully built sshmm 2021-07-11T21:15:10,310 Removed build tracker: '/tmp/pip-req-tracker-5sw02oyq'