2021-07-12T00:04:58,659 Created temporary directory: /tmp/pip-ephem-wheel-cache-4zhrvsm8
2021-07-12T00:04:58,662 Created temporary directory: /tmp/pip-req-tracker-rejefnlp
2021-07-12T00:04:58,663 Initialized build tracking at /tmp/pip-req-tracker-rejefnlp
2021-07-12T00:04:58,663 Created build tracker: /tmp/pip-req-tracker-rejefnlp
2021-07-12T00:04:58,663 Entered build tracker: /tmp/pip-req-tracker-rejefnlp
2021-07-12T00:04:58,664 Created temporary directory: /tmp/pip-wheel-6g72u2xj
2021-07-12T00:04:58,693 1 location(s) to search for versions of mikado:
2021-07-12T00:04:58,693 * https://pypi.org/simple/mikado/
2021-07-12T00:04:58,694 Fetching project page and analyzing links: https://pypi.org/simple/mikado/
2021-07-12T00:04:58,694 Getting page https://pypi.org/simple/mikado/
2021-07-12T00:04:58,696 Found index url https://pypi.org/simple
2021-07-12T00:04:58,795   Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1
2021-07-12T00:04:58,796   Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 (from https://pypi.org/simple/mikado/), version: 1.0.0b9
2021-07-12T00:04:58,796   Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab (from https://pypi.org/simple/mikado/), version: 1.0.0b10
2021-07-12T00:04:58,796   Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 (from https://pypi.org/simple/mikado/), version: 1.0
2021-07-12T00:04:58,797   Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e (from https://pypi.org/simple/mikado/), version: 1.1
2021-07-12T00:04:58,797   Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz#sha256=43b2734aee61c437fd6d2c8645e10c1a9f723fa60505e3065bfea1f4a771e44e (from https://pypi.org/simple/mikado/), version: 1.2
2021-07-12T00:04:58,797   Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 (from https://pypi.org/simple/mikado/), version: 1.2.1
2021-07-12T00:04:58,797   Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 (from https://pypi.org/simple/mikado/), version: 1.2.2
2021-07-12T00:04:58,814   Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=86046d7c1d80363ae0bdea8adbaa73a499d288c1540ed7b7ef6cf2df8db2b809 (from https://pypi.org/simple/mikado/)
2021-07-12T00:04:58,815   Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 (from https://pypi.org/simple/mikado/), version: 1.2.4
2021-07-12T00:04:58,815   Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz#sha256=745ffb74e62d1d1e777f1b6fc84acb8aae2f27290d40301fec0971560e6ba054 (from https://pypi.org/simple/mikado/), version: 2.0rc1
2021-07-12T00:04:58,816   Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz#sha256=3cbf2465f9e42dc7a02f8c4aff8625e5421010e3df7a6b3f98d87e82f5534e26 (from https://pypi.org/simple/mikado/), version: 2.0rc2
2021-07-12T00:04:58,816   Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz#sha256=f4736adb1014c70758f12904bf7dfe10e153b9497bdb82903d231540a23b8d57 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0
2021-07-12T00:04:58,817   Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz#sha256=d77bf5ca843d8cea35208c52750d014d704d46889633d5ac0f12edba6b5aa131 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1
2021-07-12T00:04:58,818   Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz#sha256=6c58ccab055f95cdbb0fb0273397ce72186ff7d99fd5ba4bdeb812ea4c18f1a6 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2
2021-07-12T00:04:58,818   Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz#sha256=b8ca7cecead9e30430de2c205e65c961b3d704d9351b85d6108577f9ffaba58f (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0
2021-07-12T00:04:58,819   Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz#sha256=2107de041d57cac81b1ff52da2b1d029f6c66f7fde78adc66cfbafd57a5215b7 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1
2021-07-12T00:04:58,819   Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz#sha256=0892dce8b07c655c63918933aaf4a47292bc5602f6be4b226756106c21c53177 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0
2021-07-12T00:04:58,820   Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz#sha256=2f8d410340e39b0fced63ee523391eae8f18751f3a0910de1cf1a27e1129d210 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1
2021-07-12T00:04:58,820   Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz#sha256=cb9705ff46b6e67279e27ac1836443782e128619b6ea78676364d11a097a21a9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2
2021-07-12T00:04:58,821   Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz#sha256=bdbdbdeb56bab4a4d633a0be36aea1aac3c025763a5d6721c98982ac1bd17bf9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3
2021-07-12T00:04:58,822   Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz#sha256=d7eeecb13334dcfee2e8b484e3aa4c31990a7e1f1e0001cabe5a669ef7c9f433 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4
2021-07-12T00:04:58,822   Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz#sha256=ea10960477612dd0a387b2135ed76dbc23e2957b3241c8726559541b88b9ee2e (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5
2021-07-12T00:04:58,822   Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz#sha256=c785197f0b6e6f8597100a63181a0d39109bec914e9691a0a972a5244da5cd32 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0
2021-07-12T00:04:58,823 Skipping link: not a file: https://pypi.org/simple/mikado/
2021-07-12T00:04:58,827 Given no hashes to check 1 links for project 'mikado': discarding no candidates
2021-07-12T00:04:58,846 Collecting mikado==1.0.0b9
2021-07-12T00:04:58,848   Created temporary directory: /tmp/pip-unpack-ugcyn6sj
2021-07-12T00:04:58,889   Downloading Mikado-1.0.0b9.tar.gz (16.8 MB)
2021-07-12T00:05:01,932   Added mikado==1.0.0b9 from https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 to build tracker '/tmp/pip-req-tracker-rejefnlp'
2021-07-12T00:05:01,933     Running setup.py (path:/tmp/pip-wheel-6g72u2xj/mikado_986c8827af914df7931f7294b772eba7/setup.py) egg_info for package mikado
2021-07-12T00:05:01,934     Created temporary directory: /tmp/pip-pip-egg-info-k4b0mkg3
2021-07-12T00:05:01,934     Running command python setup.py egg_info
2021-07-12T00:05:03,641     running egg_info
2021-07-12T00:05:03,643     creating /tmp/pip-pip-egg-info-k4b0mkg3/Mikado.egg-info
2021-07-12T00:05:03,644     writing /tmp/pip-pip-egg-info-k4b0mkg3/Mikado.egg-info/PKG-INFO
2021-07-12T00:05:03,647     writing dependency_links to /tmp/pip-pip-egg-info-k4b0mkg3/Mikado.egg-info/dependency_links.txt
2021-07-12T00:05:03,649     writing entry points to /tmp/pip-pip-egg-info-k4b0mkg3/Mikado.egg-info/entry_points.txt
2021-07-12T00:05:03,650     writing requirements to /tmp/pip-pip-egg-info-k4b0mkg3/Mikado.egg-info/requires.txt
2021-07-12T00:05:03,651     writing top-level names to /tmp/pip-pip-egg-info-k4b0mkg3/Mikado.egg-info/top_level.txt
2021-07-12T00:05:03,653     writing manifest file '/tmp/pip-pip-egg-info-k4b0mkg3/Mikado.egg-info/SOURCES.txt'
2021-07-12T00:05:03,849     reading manifest file '/tmp/pip-pip-egg-info-k4b0mkg3/Mikado.egg-info/SOURCES.txt'
2021-07-12T00:05:03,851     reading manifest template 'MANIFEST.in'
2021-07-12T00:05:04,265     warning: no files found matching '*py' under directory 'bin'
2021-07-12T00:05:04,588     adding license file 'AUTHORS'
2021-07-12T00:05:04,612     writing manifest file '/tmp/pip-pip-egg-info-k4b0mkg3/Mikado.egg-info/SOURCES.txt'
2021-07-12T00:05:04,708   Source in /tmp/pip-wheel-6g72u2xj/mikado_986c8827af914df7931f7294b772eba7 has version 1.0.0b9, which satisfies requirement mikado==1.0.0b9 from https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59
2021-07-12T00:05:04,709   Removed mikado==1.0.0b9 from https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 from build tracker '/tmp/pip-req-tracker-rejefnlp'
2021-07-12T00:05:04,713 Created temporary directory: /tmp/pip-unpack-v64vvbiq
2021-07-12T00:05:04,714 Building wheels for collected packages: mikado
2021-07-12T00:05:04,717   Created temporary directory: /tmp/pip-wheel-pvfvvzhk
2021-07-12T00:05:04,718   Building wheel for mikado (setup.py): started
2021-07-12T00:05:04,718   Destination directory: /tmp/pip-wheel-pvfvvzhk
2021-07-12T00:05:04,718   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6g72u2xj/mikado_986c8827af914df7931f7294b772eba7/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6g72u2xj/mikado_986c8827af914df7931f7294b772eba7/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pvfvvzhk
2021-07-12T00:05:06,364   running bdist_wheel
2021-07-12T00:05:06,370   running build
2021-07-12T00:05:06,370   running build_py
2021-07-12T00:05:06,531   creating build/lib.linux-armv7l-3.9
2021-07-12T00:05:06,532   creating build/lib.linux-armv7l-3.9/Mikado
2021-07-12T00:05:06,533   copying Mikado/exceptions.py -> build/lib.linux-armv7l-3.9/Mikado
2021-07-12T00:05:06,535   copying Mikado/__init__.py -> build/lib.linux-armv7l-3.9/Mikado
2021-07-12T00:05:06,538   creating build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T00:05:06,539   copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T00:05:06,542   copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T00:05:06,545   copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T00:05:06,547   copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T00:05:06,550   copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T00:05:06,553   copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T00:05:06,556   copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T00:05:06,559   creating build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,561   copying Mikado/loci/locus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,565   copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,567   copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,571   copying Mikado/loci/clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,574   copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,578   copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,581   copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,583   copying Mikado/loci/transcript.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,589   copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,592   copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,594   copying Mikado/loci/transcriptchecker.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,598   copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T00:05:06,602   creating build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:06,603   copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:06,606   copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:06,609   copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:06,612   creating build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T00:05:06,613   copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T00:05:06,617   copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T00:05:06,618   copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T00:05:06,621   creating build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T00:05:06,622   copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T00:05:06,625   copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T00:05:06,628   copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T00:05:06,629   copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T00:05:06,632   creating build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T00:05:06,633   copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T00:05:06,637   creating build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T00:05:06,638   copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T00:05:06,641   copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T00:05:06,644   copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T00:05:06,647   copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T00:05:06,649   copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T00:05:06,651   copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T00:05:06,653   copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T00:05:06,655   creating build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:06,656   copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:06,660   copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:06,662   copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:06,665   copying Mikado/scales/compare.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:06,669   copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:06,671   creating build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T00:05:06,672   copying Mikado/serializers/external.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T00:05:06,675   copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T00:05:06,678   copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T00:05:06,680   copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T00:05:06,683   creating build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T00:05:06,683   copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T00:05:06,687   copying Mikado/picking/picker.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T00:05:06,690   copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T00:05:06,694   creating build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,695   copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,698   copying Mikado/tests/test_excluded.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,699   copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,702   copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,705   copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,708   copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,711   copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,713   copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,715   copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,717   copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,719   copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,723   copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,725   copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,728   copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,730   copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,733   copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,737   copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,740   copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,742   copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,744   copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,749   copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,751   copying Mikado/tests/test_abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,753   copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,756   copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,758   copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,760   copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:06,763   creating build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-12T00:05:06,764   copying Mikado/loci/transcript_methods/printing.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-12T00:05:06,767   copying Mikado/loci/transcript_methods/finalizing.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-12T00:05:06,770   copying Mikado/loci/transcript_methods/retrieval.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-12T00:05:06,774   copying Mikado/loci/transcript_methods/splitting.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-12T00:05:06,779   copying Mikado/loci/transcript_methods/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci/transcript_methods
2021-07-12T00:05:06,782   creating build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T00:05:06,783   copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T00:05:06,787   copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T00:05:06,789   copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T00:05:06,792   copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T00:05:06,794   copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T00:05:06,796   copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T00:05:06,798   copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T00:05:06,800   copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T00:05:06,803   creating build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T00:05:06,804   copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T00:05:06,806   copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T00:05:06,808   copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T00:05:06,810   copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T00:05:06,812   copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T00:05:06,814   copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T00:05:06,817   copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T00:05:06,820   running egg_info
2021-07-12T00:05:06,834   writing Mikado.egg-info/PKG-INFO
2021-07-12T00:05:06,836   writing dependency_links to Mikado.egg-info/dependency_links.txt
2021-07-12T00:05:06,837   writing entry points to Mikado.egg-info/entry_points.txt
2021-07-12T00:05:06,839   writing requirements to Mikado.egg-info/requires.txt
2021-07-12T00:05:06,840   writing top-level names to Mikado.egg-info/top_level.txt
2021-07-12T00:05:06,858   reading manifest file 'Mikado.egg-info/SOURCES.txt'
2021-07-12T00:05:06,875   reading manifest template 'MANIFEST.in'
2021-07-12T00:05:07,312   warning: no files found matching '*py' under directory 'bin'
2021-07-12T00:05:07,652   adding license file 'AUTHORS'
2021-07-12T00:05:07,686   writing manifest file 'Mikado.egg-info/SOURCES.txt'
2021-07-12T00:05:07,716   copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:07,734   copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:07,737   copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:07,742   copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:07,744   copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:07,746   copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T00:05:07,750   copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T00:05:07,753   copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T00:05:07,755   copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T00:05:07,758   creating build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T00:05:07,759   copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T00:05:07,761   copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T00:05:07,764   copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T00:05:07,766   copying Mikado/configuration/scoring_files/spombe.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T00:05:07,769   copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T00:05:07,772   copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T00:05:07,775   copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T00:05:07,778   copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T00:05:07,781   copying Mikado/daijin/local.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T00:05:07,784   copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T00:05:07,788   copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T00:05:07,793   copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:07,807   copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:07,809   copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:07,812   copying Mikado/scales/f1.c -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:07,817   copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:07,819   copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:07,821   copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:07,980   copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:07,983   copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:07,987   copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:07,989   copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:07,993   copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,001   copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,035   copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,075   copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,082   copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,084   copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,086   copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,089   copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,092   copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,095   copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,099   copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,101   copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T00:05:08,251   creating build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,252   copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,257   copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,259   copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,262   copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,265   copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,268   copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,271   copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,275   copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,282   copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,286   copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,290   copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,293   copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,296   copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,299   copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,302   copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,306   copying Mikado/tests/__pycache__/test_abstractlocus.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,308   copying Mikado/tests/__pycache__/test_abstractlocus.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,311   copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,313   copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,315   copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,318   copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,320   copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,323   copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,326   copying Mikado/tests/__pycache__/test_excluded.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,329   copying Mikado/tests/__pycache__/test_excluded.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,331   copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,333   copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,335   copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,338   copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,341   copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,343   copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,346   copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,349   copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,352   copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,354   copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,357   copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,360   copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,362   copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,365   copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,369   copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,372   copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,375   copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,378   copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,381   copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,384   copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,388   copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,391   copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,395   copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,400   copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,403   copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,406   copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,409   copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T00:05:08,412   creating build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T00:05:08,413   copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T00:05:08,415   copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T00:05:08,418   copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T00:05:08,434   running build_ext
2021-07-12T00:05:08,439   building 'Mikado.utilities.overlap' extension
2021-07-12T00:05:08,439   creating build/temp.linux-armv7l-3.9
2021-07-12T00:05:08,440   creating build/temp.linux-armv7l-3.9/Mikado
2021-07-12T00:05:08,440   creating build/temp.linux-armv7l-3.9/Mikado/utilities
2021-07-12T00:05:08,441   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o
2021-07-12T00:05:08,851   Mikado/utilities/overlap.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T00:05:08,852   Mikado/utilities/overlap.c:2266:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,852    2266 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,852         |                     ^
2021-07-12T00:05:08,852   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,853                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,853                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,853   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:08,853     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:08,853         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,853   Mikado/utilities/overlap.c:2266:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,854    2266 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,854         |                     ^
2021-07-12T00:05:08,854   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,854                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,854                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,854   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T00:05:08,854     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T00:05:08,854         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,855   Mikado/utilities/overlap.c:2266:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,855    2266 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,855         |                     ^
2021-07-12T00:05:08,855   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,855                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,855                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,855   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:08,855     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:08,856         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,856   Mikado/utilities/overlap.c:2266:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,856    2266 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,856         |                     ^
2021-07-12T00:05:08,856   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,856                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,856                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,856   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:08,856     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:08,857         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,857   Mikado/utilities/overlap.c:2266:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,857    2266 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,857         |                     ^
2021-07-12T00:05:08,857   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,857                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,857                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,857   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T00:05:08,858     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T00:05:08,858         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,858   Mikado/utilities/overlap.c:2266:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,858    2266 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,858         |                     ^
2021-07-12T00:05:08,858   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,858                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,858                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,858   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:08,859     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:08,859         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,859   Mikado/utilities/overlap.c:2282:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,859    2282 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,860         |                         ^
2021-07-12T00:05:08,860   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,860                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,860                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,860   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:08,860     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:08,860         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,860   Mikado/utilities/overlap.c:2282:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,861    2282 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,861         |                         ^
2021-07-12T00:05:08,861   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,861                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,861                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,861   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T00:05:08,861     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T00:05:08,861         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,861   Mikado/utilities/overlap.c:2282:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,862    2282 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,862         |                         ^
2021-07-12T00:05:08,862   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,862                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,862                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,862   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:08,862     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:08,862         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,862   Mikado/utilities/overlap.c:2282:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,863    2282 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,863         |                         ^
2021-07-12T00:05:08,863   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,863                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,863                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,863   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:08,863     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:08,863         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,863   Mikado/utilities/overlap.c:2282:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,864    2282 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,864         |                         ^
2021-07-12T00:05:08,864   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,864                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,864                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,864   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T00:05:08,864     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T00:05:08,864         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:08,864   Mikado/utilities/overlap.c:2282:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:08,865    2282 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:08,865         |                         ^
2021-07-12T00:05:08,865   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:08,865                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:08,865                    from Mikado/utilities/overlap.c:11:
2021-07-12T00:05:08,865   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:08,865     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:08,865         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,205   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o -o build/lib.linux-armv7l-3.9/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so
2021-07-12T00:05:10,323   building 'Mikado.scales.f1' extension
2021-07-12T00:05:10,324   creating build/temp.linux-armv7l-3.9/Mikado/scales
2021-07-12T00:05:10,324   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-3.9/Mikado/scales/f1.o
2021-07-12T00:05:10,703   Mikado/scales/f1.c: In function ‘__Pyx_PyCFunction_FastCall’:
2021-07-12T00:05:10,704   Mikado/scales/f1.c:1821:13: error: too many arguments to function ‘(PyObject * (*)(PyObject *, PyObject * const*, Py_ssize_t))meth’
2021-07-12T00:05:10,704    1821 |     return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
2021-07-12T00:05:10,704         |            ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,713   Mikado/scales/f1.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T00:05:10,714   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,714    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,714         |                     ^
2021-07-12T00:05:10,714   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,715                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,715                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,715   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:10,715     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:10,715         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,716   Mikado/scales/f1.c:2163:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,716    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,716         |                     ^
2021-07-12T00:05:10,716   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,716                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,717                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,717   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T00:05:10,717     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T00:05:10,717         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,718   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,718    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,718         |                     ^
2021-07-12T00:05:10,718   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,718                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,718                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,718   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:10,718     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:10,719         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,719   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,719    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,719         |                     ^
2021-07-12T00:05:10,719   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,720                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,720                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,720   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:10,720     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:10,720         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,720   Mikado/scales/f1.c:2163:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,721    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,721         |                     ^
2021-07-12T00:05:10,721   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,721                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,721                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,721   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T00:05:10,721     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T00:05:10,721         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,722   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,722    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,722         |                     ^
2021-07-12T00:05:10,722   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,722                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,722                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,723   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:10,723     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:10,723         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,724   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,724    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,724         |                         ^
2021-07-12T00:05:10,724   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,724                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,724                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,724   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:10,725     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:10,725         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,725   Mikado/scales/f1.c:2179:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,725    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,725         |                         ^
2021-07-12T00:05:10,726   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,726                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,726                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,726   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T00:05:10,726     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T00:05:10,726         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,727   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,727    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,727         |                         ^
2021-07-12T00:05:10,727   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,727                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,727                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,727   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:10,727     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:10,728         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,728   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,728    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,728         |                         ^
2021-07-12T00:05:10,728   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,729                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,729                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,729   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:10,729     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:10,729         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,729   Mikado/scales/f1.c:2179:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,730    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,730         |                         ^
2021-07-12T00:05:10,730   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,730                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,730                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,730   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T00:05:10,730     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T00:05:10,730         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,731   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T00:05:10,731    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T00:05:10,731         |                         ^
2021-07-12T00:05:10,731   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T00:05:10,731                    from /usr/include/python3.9/Python.h:97,
2021-07-12T00:05:10,731                    from Mikado/scales/f1.c:11:
2021-07-12T00:05:10,732   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T00:05:10,732     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T00:05:10,732         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T00:05:10,783   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-12T00:05:10,890   Building wheel for mikado (setup.py): finished with status 'error'
2021-07-12T00:05:10,891   ERROR: Failed building wheel for mikado
2021-07-12T00:05:10,892   Running setup.py clean for mikado
2021-07-12T00:05:10,892   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-6g72u2xj/mikado_986c8827af914df7931f7294b772eba7/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-6g72u2xj/mikado_986c8827af914df7931f7294b772eba7/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-12T00:05:12,544   running clean
2021-07-12T00:05:12,547   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-12T00:05:12,550   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-12T00:05:12,644   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-12T00:05:12,644   'build/scripts-3.9' does not exist -- can't clean it
2021-07-12T00:05:12,732 Failed to build mikado
2021-07-12T00:05:12,733 ERROR: Failed to build one or more wheels
2021-07-12T00:05:12,734 Exception information:
2021-07-12T00:05:12,734 Traceback (most recent call last):
2021-07-12T00:05:12,734   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-12T00:05:12,734     status = self.run(options, args)
2021-07-12T00:05:12,734   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-12T00:05:12,734     return func(self, options, args)
2021-07-12T00:05:12,734   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-12T00:05:12,734     raise CommandError(
2021-07-12T00:05:12,734 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-12T00:05:12,736 Removed build tracker: '/tmp/pip-req-tracker-rejefnlp'