2021-07-12T00:11:27,881 Created temporary directory: /tmp/pip-ephem-wheel-cache-_npo6s9p 2021-07-12T00:11:27,884 Created temporary directory: /tmp/pip-req-tracker-0r6_8r6t 2021-07-12T00:11:27,884 Initialized build tracking at /tmp/pip-req-tracker-0r6_8r6t 2021-07-12T00:11:27,885 Created build tracker: /tmp/pip-req-tracker-0r6_8r6t 2021-07-12T00:11:27,885 Entered build tracker: /tmp/pip-req-tracker-0r6_8r6t 2021-07-12T00:11:27,886 Created temporary directory: /tmp/pip-wheel-tv392hph 2021-07-12T00:11:27,918 1 location(s) to search for versions of sshmm: 2021-07-12T00:11:27,918 * https://pypi.org/simple/sshmm/ 2021-07-12T00:11:27,919 Fetching project page and analyzing links: https://pypi.org/simple/sshmm/ 2021-07-12T00:11:27,919 Getting page https://pypi.org/simple/sshmm/ 2021-07-12T00:11:27,921 Found index url https://pypi.org/simple 2021-07-12T00:11:28,038 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/4d/4e5c9ec7dbdb161e2596052e03f9e28b749a3ea81e27334ed1097c0b7f52/sshmm-1.0.0b1-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=cf4f7255b766849c8521510dd9a1c87009630202593d7e2eae5e2dea95625b88 (from https://pypi.org/simple/sshmm/) 2021-07-12T00:11:28,038 Found link https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b (from https://pypi.org/simple/sshmm/), version: 1.0.0b1 2021-07-12T00:11:28,039 Found link https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 (from https://pypi.org/simple/sshmm/), version: 1.0.0b2 2021-07-12T00:11:28,039 Found link https://files.pythonhosted.org/packages/22/24/736193beb8c98f3d0d2d65163ea1cb195ef0ef8748b31939c64722ecdf53/sshmm-1.0.0b3.tar.gz#sha256=dde85e5c49a4e447b2fe2cb0a3b4c95f2e1c50fbc8e9306f0855522deefe6db6 (from https://pypi.org/simple/sshmm/), version: 1.0.0b3 2021-07-12T00:11:28,040 Found link https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 (from https://pypi.org/simple/sshmm/), version: 1.0.0b4 2021-07-12T00:11:28,040 Found link https://files.pythonhosted.org/packages/e2/72/ce482d27cd639d9a0ec3b68ea03a3944b82cbccaf1cc1100c910fe83cf9a/sshmm-1.0.0.tar.gz#sha256=dd45c82082c1598305f9f10974338eb654189736288301384c7fe4332db9de55 (from https://pypi.org/simple/sshmm/), version: 1.0.0 2021-07-12T00:11:28,041 Found link https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa (from https://pypi.org/simple/sshmm/), version: 1.0.1 2021-07-12T00:11:28,041 Found link https://files.pythonhosted.org/packages/a0/74/f289f8598a645cfc2db58a5b591750f6cdc8b080423e57b4263557f4cdab/sshmm-1.0.2.tar.gz#sha256=95b299baaf2a20b3a214026ddb5be7f827b7754d5760807a2f81e7262011e7f5 (from https://pypi.org/simple/sshmm/), version: 1.0.2 2021-07-12T00:11:28,041 Found link https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f (from https://pypi.org/simple/sshmm/), version: 1.0.4 2021-07-12T00:11:28,042 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6d/93/d1879de96986253da47c110755bcc15eda8acfe94c3f5e7185dc6a642c0c/sshmm-1.0.5-py2.7-linux-x86_64.egg#sha256=86d70f06238168852b0342ea733f6893e8baa49be151aab77d6f49cbab6ff227 (from https://pypi.org/simple/sshmm/) 2021-07-12T00:11:28,042 Found link https://files.pythonhosted.org/packages/e1/1c/d8d53d575807110582f43da63707146463dd1ba6402f93004d6750f17223/sshmm-1.0.5.tar.gz#sha256=37192b827f23fa07812a70eb5cba98beaa908e6ac91182a7a37fc782f9a76d4b (from https://pypi.org/simple/sshmm/), version: 1.0.5 2021-07-12T00:11:28,042 Found link https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 (from https://pypi.org/simple/sshmm/), version: 1.0.6 2021-07-12T00:11:28,043 Found link https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 (from https://pypi.org/simple/sshmm/), version: 1.0.7 2021-07-12T00:11:28,043 Skipping link: not a file: https://pypi.org/simple/sshmm/ 2021-07-12T00:11:28,046 Given no hashes to check 1 links for project 'sshmm': discarding no candidates 2021-07-12T00:11:28,067 Collecting sshmm==1.0.0b2 2021-07-12T00:11:28,069 Created temporary directory: /tmp/pip-unpack-6ff_qjdy 2021-07-12T00:11:28,375 Downloading sshmm-1.0.0b2.tar.gz (101 kB) 2021-07-12T00:11:28,478 Added sshmm==1.0.0b2 from https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 to build tracker '/tmp/pip-req-tracker-0r6_8r6t' 2021-07-12T00:11:28,479 Running setup.py (path:/tmp/pip-wheel-tv392hph/sshmm_62d85bdaf30d474a85b20a64decfdf6c/setup.py) egg_info for package sshmm 2021-07-12T00:11:28,480 Created temporary directory: /tmp/pip-pip-egg-info-xrlyw93q 2021-07-12T00:11:28,480 Running command python setup.py egg_info 2021-07-12T00:11:29,531 running egg_info 2021-07-12T00:11:29,533 creating /tmp/pip-pip-egg-info-xrlyw93q/sshmm.egg-info 2021-07-12T00:11:29,534 writing /tmp/pip-pip-egg-info-xrlyw93q/sshmm.egg-info/PKG-INFO 2021-07-12T00:11:29,537 writing dependency_links to /tmp/pip-pip-egg-info-xrlyw93q/sshmm.egg-info/dependency_links.txt 2021-07-12T00:11:29,540 writing requirements to /tmp/pip-pip-egg-info-xrlyw93q/sshmm.egg-info/requires.txt 2021-07-12T00:11:29,540 writing top-level names to /tmp/pip-pip-egg-info-xrlyw93q/sshmm.egg-info/top_level.txt 2021-07-12T00:11:29,542 writing manifest file '/tmp/pip-pip-egg-info-xrlyw93q/sshmm.egg-info/SOURCES.txt' 2021-07-12T00:11:29,935 reading manifest file '/tmp/pip-pip-egg-info-xrlyw93q/sshmm.egg-info/SOURCES.txt' 2021-07-12T00:11:29,941 writing manifest file '/tmp/pip-pip-egg-info-xrlyw93q/sshmm.egg-info/SOURCES.txt' 2021-07-12T00:11:30,037 Source in /tmp/pip-wheel-tv392hph/sshmm_62d85bdaf30d474a85b20a64decfdf6c has version 1.0.0b2, which satisfies requirement sshmm==1.0.0b2 from https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 2021-07-12T00:11:30,038 Removed sshmm==1.0.0b2 from https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 from build tracker '/tmp/pip-req-tracker-0r6_8r6t' 2021-07-12T00:11:30,043 Created temporary directory: /tmp/pip-unpack-jafi9z8w 2021-07-12T00:11:30,044 Building wheels for collected packages: sshmm 2021-07-12T00:11:30,048 Created temporary directory: /tmp/pip-wheel-myiaxu_v 2021-07-12T00:11:30,049 Building wheel for sshmm (setup.py): started 2021-07-12T00:11:30,049 Destination directory: /tmp/pip-wheel-myiaxu_v 2021-07-12T00:11:30,050 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-tv392hph/sshmm_62d85bdaf30d474a85b20a64decfdf6c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-tv392hph/sshmm_62d85bdaf30d474a85b20a64decfdf6c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-myiaxu_v 2021-07-12T00:11:31,129 running bdist_wheel 2021-07-12T00:11:31,313 running build 2021-07-12T00:11:31,313 running build_py 2021-07-12T00:11:31,458 creating build 2021-07-12T00:11:31,459 creating build/lib.linux-armv7l-3.9 2021-07-12T00:11:31,459 creating build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,460 copying sshmm/structure_prediction.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,463 copying sshmm/log.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,464 copying sshmm/sequence_container.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,467 copying sshmm/__init__.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,468 copying sshmm/SimpleQueue.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,470 copying sshmm/setup.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,472 copying sshmm/pwm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,474 copying sshmm/MyHMM.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,476 copying sshmm/seq_hmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,479 copying sshmm/seqstructhmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,484 creating build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T00:11:31,484 copying sshmm/img/C.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T00:11:31,488 copying sshmm/img/U.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T00:11:31,491 copying sshmm/img/T.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T00:11:31,494 copying sshmm/img/A.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T00:11:31,497 copying sshmm/img/G.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T00:11:31,501 running build_ext 2021-07-12T00:11:31,507 building 'cEstimate' extension 2021-07-12T00:11:31,507 creating build/temp.linux-armv7l-3.9 2021-07-12T00:11:31,508 creating build/temp.linux-armv7l-3.9/sshmm 2021-07-12T00:11:31,508 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c sshmm/cEstimate.c -o build/temp.linux-armv7l-3.9/sshmm/cEstimate.o 2021-07-12T00:11:31,983 sshmm/cEstimate.c: In function ‘__pyx_pf_12seqstructhmm_9cEstimate_cEstimate’: 2021-07-12T00:11:31,983 sshmm/cEstimate.c:926:17: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration] 2021-07-12T00:11:31,984 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-12T00:11:31,984 | ^~~~~~~~~~~~~~~~~ 2021-07-12T00:11:31,984 sshmm/cEstimate.c:926:15: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-12T00:11:31,985 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-12T00:11:31,985 | ^ 2021-07-12T00:11:32,001 sshmm/cEstimate.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-12T00:11:32,002 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,002 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,002 | ^ 2021-07-12T00:11:32,002 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,003 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,003 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,003 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:11:32,003 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:11:32,003 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,003 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,004 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,004 | ^ 2021-07-12T00:11:32,004 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,004 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,004 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,004 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T00:11:32,005 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T00:11:32,005 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,005 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,005 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,005 | ^ 2021-07-12T00:11:32,005 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,006 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,006 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,006 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:11:32,006 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:11:32,006 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,006 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,007 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,007 | ^ 2021-07-12T00:11:32,007 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,007 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,007 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,007 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:11:32,008 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:11:32,008 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,008 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,008 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,008 | ^ 2021-07-12T00:11:32,008 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,009 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,009 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,009 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T00:11:32,009 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T00:11:32,009 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,009 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,010 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,010 | ^ 2021-07-12T00:11:32,010 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,010 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,010 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,010 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:11:32,011 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:11:32,011 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,011 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,011 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,011 | ^ 2021-07-12T00:11:32,011 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,012 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,012 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,012 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:11:32,012 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:11:32,012 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,012 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,013 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,013 | ^ 2021-07-12T00:11:32,013 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,013 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,013 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,013 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T00:11:32,013 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T00:11:32,014 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,014 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,014 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,014 | ^ 2021-07-12T00:11:32,014 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,014 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,015 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,015 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:11:32,015 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:11:32,015 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,015 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,015 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,015 | ^ 2021-07-12T00:11:32,016 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,016 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,016 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,016 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:11:32,016 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:11:32,016 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,017 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,017 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,017 | ^ 2021-07-12T00:11:32,017 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,017 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,017 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,018 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T00:11:32,018 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T00:11:32,018 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:32,018 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:11:32,018 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:11:32,019 | ^ 2021-07-12T00:11:32,019 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:11:32,019 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:11:32,019 from sshmm/cEstimate.c:24: 2021-07-12T00:11:32,019 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:11:32,019 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:11:32,020 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:11:33,315 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/sshmm/cEstimate.o -o build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so 2021-07-12T00:11:33,486 running build_scripts 2021-07-12T00:11:33,486 creating build/scripts-3.9 2021-07-12T00:11:33,487 copying and adjusting bin/preprocess_dataset -> build/scripts-3.9 2021-07-12T00:11:33,490 copying and adjusting bin/train_seqstructhmm -> build/scripts-3.9 2021-07-12T00:11:33,492 copying and adjusting bin/batch_seqstructhmm -> build/scripts-3.9 2021-07-12T00:11:33,493 changing mode of build/scripts-3.9/preprocess_dataset from 644 to 755 2021-07-12T00:11:33,494 changing mode of build/scripts-3.9/train_seqstructhmm from 644 to 755 2021-07-12T00:11:33,494 changing mode of build/scripts-3.9/batch_seqstructhmm from 644 to 755 2021-07-12T00:11:33,501 installing to build/bdist.linux-armv7l/wheel 2021-07-12T00:11:33,502 running install 2021-07-12T00:11:33,503 running install_lib 2021-07-12T00:11:33,507 creating build/bdist.linux-armv7l 2021-07-12T00:11:33,507 creating build/bdist.linux-armv7l/wheel 2021-07-12T00:11:33,509 creating build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,510 copying build/lib.linux-armv7l-3.9/sshmm/structure_prediction.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,513 copying build/lib.linux-armv7l-3.9/sshmm/log.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,515 copying build/lib.linux-armv7l-3.9/sshmm/sequence_container.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,518 copying build/lib.linux-armv7l-3.9/sshmm/__init__.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,520 copying build/lib.linux-armv7l-3.9/sshmm/SimpleQueue.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,522 copying build/lib.linux-armv7l-3.9/sshmm/setup.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,524 copying build/lib.linux-armv7l-3.9/sshmm/pwm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,527 creating build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T00:11:33,527 copying build/lib.linux-armv7l-3.9/sshmm/img/C.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T00:11:33,530 copying build/lib.linux-armv7l-3.9/sshmm/img/U.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T00:11:33,533 copying build/lib.linux-armv7l-3.9/sshmm/img/T.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T00:11:33,536 copying build/lib.linux-armv7l-3.9/sshmm/img/A.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T00:11:33,539 copying build/lib.linux-armv7l-3.9/sshmm/img/G.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T00:11:33,541 copying build/lib.linux-armv7l-3.9/sshmm/MyHMM.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,544 copying build/lib.linux-armv7l-3.9/sshmm/seq_hmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,547 copying build/lib.linux-armv7l-3.9/sshmm/seqstructhmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T00:11:33,550 copying build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-12T00:11:33,555 running install_egg_info 2021-07-12T00:11:33,581 running egg_info 2021-07-12T00:11:33,582 writing sshmm.egg-info/PKG-INFO 2021-07-12T00:11:33,584 writing dependency_links to sshmm.egg-info/dependency_links.txt 2021-07-12T00:11:33,586 writing requirements to sshmm.egg-info/requires.txt 2021-07-12T00:11:33,587 writing top-level names to sshmm.egg-info/top_level.txt 2021-07-12T00:11:33,616 reading manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-12T00:11:33,622 writing manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-12T00:11:33,623 Copying sshmm.egg-info to build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2-py3.9.egg-info 2021-07-12T00:11:33,638 running install_scripts 2021-07-12T00:11:33,702 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2.data 2021-07-12T00:11:33,702 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2.data/scripts 2021-07-12T00:11:33,703 copying build/scripts-3.9/batch_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2.data/scripts 2021-07-12T00:11:33,706 copying build/scripts-3.9/preprocess_dataset -> build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2.data/scripts 2021-07-12T00:11:33,709 copying build/scripts-3.9/train_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2.data/scripts 2021-07-12T00:11:33,711 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2.data/scripts/batch_seqstructhmm to 755 2021-07-12T00:11:33,711 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2.data/scripts/preprocess_dataset to 755 2021-07-12T00:11:33,711 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2.data/scripts/train_seqstructhmm to 755 2021-07-12T00:11:33,737 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.0b2.dist-info/WHEEL 2021-07-12T00:11:33,740 creating '/tmp/pip-wheel-myiaxu_v/sshmm-1.0.0b2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T00:11:33,760 adding 'cEstimate.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T00:11:33,766 adding 'sshmm/MyHMM.py' 2021-07-12T00:11:33,768 adding 'sshmm/SimpleQueue.py' 2021-07-12T00:11:33,769 adding 'sshmm/__init__.py' 2021-07-12T00:11:33,770 adding 'sshmm/log.py' 2021-07-12T00:11:33,771 adding 'sshmm/pwm.py' 2021-07-12T00:11:33,773 adding 'sshmm/seq_hmm.py' 2021-07-12T00:11:33,776 adding 'sshmm/seqstructhmm.py' 2021-07-12T00:11:33,778 adding 'sshmm/sequence_container.py' 2021-07-12T00:11:33,779 adding 'sshmm/setup.py' 2021-07-12T00:11:33,780 adding 'sshmm/structure_prediction.py' 2021-07-12T00:11:33,784 adding 'sshmm/img/A.png' 2021-07-12T00:11:33,786 adding 'sshmm/img/C.png' 2021-07-12T00:11:33,789 adding 'sshmm/img/G.png' 2021-07-12T00:11:33,790 adding 'sshmm/img/T.png' 2021-07-12T00:11:33,792 adding 'sshmm/img/U.png' 2021-07-12T00:11:33,795 adding 'sshmm-1.0.0b2.data/scripts/batch_seqstructhmm' 2021-07-12T00:11:33,797 adding 'sshmm-1.0.0b2.data/scripts/preprocess_dataset' 2021-07-12T00:11:33,799 adding 'sshmm-1.0.0b2.data/scripts/train_seqstructhmm' 2021-07-12T00:11:33,801 adding 'sshmm-1.0.0b2.dist-info/METADATA' 2021-07-12T00:11:33,802 adding 'sshmm-1.0.0b2.dist-info/WHEEL' 2021-07-12T00:11:33,803 adding 'sshmm-1.0.0b2.dist-info/top_level.txt' 2021-07-12T00:11:33,804 adding 'sshmm-1.0.0b2.dist-info/RECORD' 2021-07-12T00:11:33,809 removing build/bdist.linux-armv7l/wheel 2021-07-12T00:11:33,918 Building wheel for sshmm (setup.py): finished with status 'done' 2021-07-12T00:11:33,921 Created wheel for sshmm: filename=sshmm-1.0.0b2-cp39-cp39-linux_armv7l.whl size=126465 sha256=c11e7d1fa40d554d60b1acc443b8e6a94fd238664f5b919497995569ecba05c2 2021-07-12T00:11:33,922 Stored in directory: /tmp/pip-ephem-wheel-cache-_npo6s9p/wheels/b4/05/9b/771d5024990fcf5ec0689ef6dd5e8432723355f111764d0973 2021-07-12T00:11:33,932 Successfully built sshmm 2021-07-12T00:11:33,940 Removed build tracker: '/tmp/pip-req-tracker-0r6_8r6t'