2021-07-12T00:15:22,075 Created temporary directory: /tmp/pip-ephem-wheel-cache-ckeqhq5f 2021-07-12T00:15:22,079 Created temporary directory: /tmp/pip-req-tracker-juhhirzl 2021-07-12T00:15:22,079 Initialized build tracking at /tmp/pip-req-tracker-juhhirzl 2021-07-12T00:15:22,079 Created build tracker: /tmp/pip-req-tracker-juhhirzl 2021-07-12T00:15:22,080 Entered build tracker: /tmp/pip-req-tracker-juhhirzl 2021-07-12T00:15:22,080 Created temporary directory: /tmp/pip-wheel-10u_aw_n 2021-07-12T00:15:22,112 1 location(s) to search for versions of pybedtools: 2021-07-12T00:15:22,112 * https://pypi.org/simple/pybedtools/ 2021-07-12T00:15:22,112 Fetching project page and analyzing links: https://pypi.org/simple/pybedtools/ 2021-07-12T00:15:22,113 Getting page https://pypi.org/simple/pybedtools/ 2021-07-12T00:15:22,114 Found index url https://pypi.org/simple 2021-07-12T00:15:22,305 Found link https://files.pythonhosted.org/packages/00/d9/aca9636b3e5b29f232fd6f60859f07f3420ec3c0712b50cb25c734a02a1f/pybedtools-0.2.2dev.tar.gz#sha256=6ab084ce36f26c6086680ef25693873f9534ddb3aefec3aedbc8221e5f6f4fb6 (from https://pypi.org/simple/pybedtools/), version: 0.2.2dev 2021-07-12T00:15:22,306 Found link https://files.pythonhosted.org/packages/44/19/a9bebb9eccd8d64d58202d5b3a151de81ffc7703a47503161b7615554703/pybedtools-0.5dev.tar.gz#sha256=4e55a927a22979473c1414b43154cd3e5a51380b1895bc555a85ee4bf385ba25 (from https://pypi.org/simple/pybedtools/), version: 0.5dev 2021-07-12T00:15:22,306 Found link https://files.pythonhosted.org/packages/e4/2f/e842c6b1165d706ebc62c931c11d4dfffe60e6b045ecf80eef7ea78d7afc/pybedtools-0.5rc1.tar.gz#sha256=78ccf10923b00ec14cf337b3b9624e39fdd383ba29048f3cc03e3aabc52edb40 (from https://pypi.org/simple/pybedtools/), version: 0.5rc1 2021-07-12T00:15:22,306 Found link https://files.pythonhosted.org/packages/85/17/c89028c00537638629ca21be7f1b84e963fc8b63c1e9a5fda9884f86fb90/pybedtools-0.5.tar.gz#sha256=16e46c664e47cd36d926de202d9ac99cf7e8c970e6e008603ccb6a23139a257a (from https://pypi.org/simple/pybedtools/), version: 0.5 2021-07-12T00:15:22,307 Found link https://files.pythonhosted.org/packages/e7/9b/f082d2db470a0c9ba777a0d661fd5a7292c367840880040940de4a705e1f/pybedtools-0.5.5.tar.gz#sha256=4bc9cdadb12fae47c1a2e423f467cfd92dc282a52f2ac5d21c35611ef59c698d (from https://pypi.org/simple/pybedtools/), version: 0.5.5 2021-07-12T00:15:22,307 Found link https://files.pythonhosted.org/packages/3c/e7/365015ec8104195329635cb75ef745bff45d905271cd165f5048efaf48e3/pybedtools-0.6rc1.tar.gz#sha256=006e637d2a2e6f98f7b178211adc69fabf3cf37e168c730dbfe9e2fa810f8f8d (from https://pypi.org/simple/pybedtools/), version: 0.6rc1 2021-07-12T00:15:22,307 Found link https://files.pythonhosted.org/packages/04/ce/0e1480725fe80eb9a401f59e1bcc28fce721f6c2c5d7be233894d0154551/pybedtools-0.6.tar.gz#sha256=416406bbf059372e3214c68688447cbb9cd4e45b6a58b1615be4ff932975ede6 (from https://pypi.org/simple/pybedtools/), version: 0.6 2021-07-12T00:15:22,307 Found link https://files.pythonhosted.org/packages/ac/25/c971ba83c6df08cbd17626339ec637df57a0aa409ba3042408ff349dd710/pybedtools-0.6.1.tar.gz#sha256=da3f1ec9e6d23cba6627adb124a27d291f72b855006a277d91c1b366bfccdb22 (from https://pypi.org/simple/pybedtools/), version: 0.6.1 2021-07-12T00:15:22,308 Found link https://files.pythonhosted.org/packages/3e/71/cb09c7b874a87803f9fb9a9b679d02a82879b9cadca4c93756e05e65a439/pybedtools-0.6.2.tar.gz#sha256=7263d2a32a4805e0b0c25be32f38a17de760557c2d83234e46364ecd2debec14 (from https://pypi.org/simple/pybedtools/), version: 0.6.2 2021-07-12T00:15:22,308 Found link https://files.pythonhosted.org/packages/28/0b/15291a1aac0a2a1eb814a0c883ccebf2eebaebbef9923bfa0444df0cb3a8/pybedtools-0.6.3.tar.gz#sha256=bd7ad8584d6d19eef175a0f9b9ff00db903db532ae4c3e8bad614246974daff0 (from https://pypi.org/simple/pybedtools/), version: 0.6.3 2021-07-12T00:15:22,308 Found link https://files.pythonhosted.org/packages/7a/12/73027be04fc57dd3340e2120f0148c0aca569b16e62333f32a40b2b06ee0/pybedtools-0.6.4.tar.gz#sha256=98cd0e8bc278e8d3bf584cde5eea43f23251c91bbd70407172db206d2f3f751f (from https://pypi.org/simple/pybedtools/), version: 0.6.4 2021-07-12T00:15:22,309 Found link https://files.pythonhosted.org/packages/a4/98/dab963ff44ddd40849a01b145b6d769158d9794b979fdbfd173728e06e5b/pybedtools-0.6.5.tar.gz#sha256=0ee69c4670bae332f6de600af5edb4ed45e8dcaf3988e7eb78ab53a1889a8d9c (from https://pypi.org/simple/pybedtools/), version: 0.6.5 2021-07-12T00:15:22,309 Found link https://files.pythonhosted.org/packages/a3/91/02e900caea18ee909665440727222a9f37c9a532170c52684123f07d6e21/pybedtools-0.6.6.tar.gz#sha256=b7d2436c2f29b92cf7c2a4552a6a13adc73b2026d7a25c4aaae6797589698c68 (from https://pypi.org/simple/pybedtools/), version: 0.6.6 2021-07-12T00:15:22,309 Found link https://files.pythonhosted.org/packages/af/ff/7d488b19b8e4109bbaf7b7e4c5dc53207f2c4354d7729cf73f17a79fa104/pybedtools-0.6.7.tar.gz#sha256=b31853473db3a755bbe668b5fc209f0cd9ed876f15e192c244e348f4a7cb1cfb (from https://pypi.org/simple/pybedtools/), version: 0.6.7 2021-07-12T00:15:22,310 Found link https://files.pythonhosted.org/packages/aa/e9/c92a7e58326bf76534af1fbd4074def6999130b1838b4dcc51e9f3ba5e17/pybedtools-0.6.8.tar.gz#sha256=a278a1b5ae230eb9c1b57c4da45dad5646aead899e927ad4d9f38df3f90841db (from https://pypi.org/simple/pybedtools/), version: 0.6.8 2021-07-12T00:15:22,310 Found link https://files.pythonhosted.org/packages/79/20/2a0861cc9ffc41043efd814cdf860828f4b2213573c82ea6138eb6cb221b/pybedtools-0.6.9.tar.gz#sha256=56915b3e2200c6fb56260a36f839e66ce27d7dd3ef55fba278c3931b786fbfd1 (from https://pypi.org/simple/pybedtools/), version: 0.6.9 2021-07-12T00:15:22,310 Found link https://files.pythonhosted.org/packages/e6/8d/06beb4e8a9e9a4ce042af337a5b855a789da586072d0c418ed9cb9398628/pybedtools-0.7.0.tar.gz#sha256=a0b3bd7c32786067a767585ab17ab9e04bf7e227f275ff3883fab9c1d8e458ba (from https://pypi.org/simple/pybedtools/), version: 0.7.0 2021-07-12T00:15:22,310 Found link https://files.pythonhosted.org/packages/b5/1c/1b7e66668105e5b84cc6224a54ce552c6a6113e9b34c980fc436140e6be1/pybedtools-0.7.1.tar.gz#sha256=d889e8e1f75803b13f0f774320ca3e38eea88e7998866a1c90e9ba51caa855be (from https://pypi.org/simple/pybedtools/), version: 0.7.1 2021-07-12T00:15:22,311 Found link https://files.pythonhosted.org/packages/a2/43/d80dbf32da421c78ea84a386402e1840dd06f3aba7e5fe73e8134e1ce50a/pybedtools-0.7.4.tar.gz#sha256=15cfae9e8a207ded403ad9fa2e77f09d14c2fe377d1bc5f8b063647e2d0554e0 (from https://pypi.org/simple/pybedtools/), version: 0.7.4 2021-07-12T00:15:22,311 Found link https://files.pythonhosted.org/packages/ed/f1/2caa4dc57b62707f0df147c0820d1fc8565e439c5f5c86778df7a2fec59f/pybedtools-0.7.5.tar.gz#sha256=f2428b4845083eff36385bec241ddddf7488a7de3f18886a78c73226e9e3306c (from https://pypi.org/simple/pybedtools/), version: 0.7.5 2021-07-12T00:15:22,311 Found link https://files.pythonhosted.org/packages/f4/49/ce7ccc0ad79189eb8b8eec170c350643e7a209f98e34dae239a954d6fdb0/pybedtools-0.7.6.tar.gz#sha256=8b6382036c715b49f83e35cc787d7084c1633ebe94a2a3c4102e805613f7426b (from https://pypi.org/simple/pybedtools/), version: 0.7.6 2021-07-12T00:15:22,312 Found link https://files.pythonhosted.org/packages/c2/a6/29fd41e86b38e7ca39eb7818c422e927534f2bd324c34cfd411cfca203b0/pybedtools-0.7.7.tar.gz#sha256=dba8758bd86121e4dcfc8b25ebae7d3b2de6ff9e38e4cdd9dc03f128bf5d4c9d (from https://pypi.org/simple/pybedtools/), version: 0.7.7 2021-07-12T00:15:22,312 Found link https://files.pythonhosted.org/packages/2d/ee/aa19e50e03e06c817d00eadf8b56824b9e473da8c3e8ca3b33a11717ee6f/pybedtools-0.7.8.tar.gz#sha256=e80e8b73b233ec6950069e0e1cf14127aff8310a8eaf3ee663bdfbcb61309fdc (from https://pypi.org/simple/pybedtools/), version: 0.7.8 2021-07-12T00:15:22,312 Found link https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz#sha256=e9134d7dc3de41b90126df633fe3aa854a0427d7ada834dc8681081e8b2fea14 (from https://pypi.org/simple/pybedtools/), version: 0.7.9 2021-07-12T00:15:22,312 Found link https://files.pythonhosted.org/packages/09/57/e7668e8644c60413be05b8cc9c23aaea3a0717b4025843d8c26b7c4822af/pybedtools-0.7.10.tar.gz#sha256=518a2311bd33f29cf2ee8fc1a028dda8c8e380c9fc83fcb0fbaa206933174b50 (from https://pypi.org/simple/pybedtools/), version: 0.7.10 2021-07-12T00:15:22,313 Found link https://files.pythonhosted.org/packages/ca/b6/af143d5247cfe331e32c96ca92056293140eb8ce788d37842f6dcea734b4/pybedtools-0.8.0.tar.gz#sha256=4eebd2cd1764ee1c604fd881703c3e329195485350b987b7fb8db42d232984f6 (from https://pypi.org/simple/pybedtools/), version: 0.8.0 2021-07-12T00:15:22,313 Found link https://files.pythonhosted.org/packages/bf/14/152220f39cda6b9b72810eeed103c6ec78422429adabe3aafc3eaf6feb40/pybedtools-0.8.1.tar.gz#sha256=c035e078617f94720eb627e20c91f2377a7bd9158a137872a6ac88f800898593 (from https://pypi.org/simple/pybedtools/), version: 0.8.1 2021-07-12T00:15:22,313 Found link https://files.pythonhosted.org/packages/5b/57/46e9c8135954550d1d3a05db5b0462a264239f7f71c78af304bb47c5c900/pybedtools-0.8.2.tar.gz#sha256=a184a36099458627e7ef52ea88218f7c00dc9c505b4256ece9ede58b1efa8771 (from https://pypi.org/simple/pybedtools/), version: 0.8.2 2021-07-12T00:15:22,314 Skipping link: not a file: https://pypi.org/simple/pybedtools/ 2021-07-12T00:15:22,335 Given no hashes to check 1 links for project 'pybedtools': discarding no candidates 2021-07-12T00:15:22,354 Collecting pybedtools==0.7.9 2021-07-12T00:15:22,356 Created temporary directory: /tmp/pip-unpack-p82yacdw 2021-07-12T00:15:23,547 Downloading pybedtools-0.7.9.tar.gz (12.6 MB) 2021-07-12T00:15:25,610 Added pybedtools==0.7.9 from https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz#sha256=e9134d7dc3de41b90126df633fe3aa854a0427d7ada834dc8681081e8b2fea14 to build tracker '/tmp/pip-req-tracker-juhhirzl' 2021-07-12T00:15:25,611 Running setup.py (path:/tmp/pip-wheel-10u_aw_n/pybedtools_7d0a80da8bc34859a4c6b66354c02e8a/setup.py) egg_info for package pybedtools 2021-07-12T00:15:25,612 Created temporary directory: /tmp/pip-pip-egg-info-a_teo1iz 2021-07-12T00:15:25,612 Running command python setup.py egg_info 2021-07-12T00:15:26,829 running egg_info 2021-07-12T00:15:26,831 creating /tmp/pip-pip-egg-info-a_teo1iz/pybedtools.egg-info 2021-07-12T00:15:26,832 writing /tmp/pip-pip-egg-info-a_teo1iz/pybedtools.egg-info/PKG-INFO 2021-07-12T00:15:26,836 writing dependency_links to /tmp/pip-pip-egg-info-a_teo1iz/pybedtools.egg-info/dependency_links.txt 2021-07-12T00:15:26,838 writing requirements to /tmp/pip-pip-egg-info-a_teo1iz/pybedtools.egg-info/requires.txt 2021-07-12T00:15:26,839 writing top-level names to /tmp/pip-pip-egg-info-a_teo1iz/pybedtools.egg-info/top_level.txt 2021-07-12T00:15:26,841 writing manifest file '/tmp/pip-pip-egg-info-a_teo1iz/pybedtools.egg-info/SOURCES.txt' 2021-07-12T00:15:27,047 reading manifest file '/tmp/pip-pip-egg-info-a_teo1iz/pybedtools.egg-info/SOURCES.txt' 2021-07-12T00:15:27,050 reading manifest template 'MANIFEST.in' 2021-07-12T00:15:27,281 warning: no previously-included files matching '__pycache__' found under directory '*' 2021-07-12T00:15:27,282 warning: no previously-included files matching '*.py[co]' found under directory '*' 2021-07-12T00:15:27,282 adding license file 'LICENSE.txt' 2021-07-12T00:15:27,296 writing manifest file '/tmp/pip-pip-egg-info-a_teo1iz/pybedtools.egg-info/SOURCES.txt' 2021-07-12T00:15:27,374 Source in /tmp/pip-wheel-10u_aw_n/pybedtools_7d0a80da8bc34859a4c6b66354c02e8a has version 0.7.9, which satisfies requirement pybedtools==0.7.9 from https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz#sha256=e9134d7dc3de41b90126df633fe3aa854a0427d7ada834dc8681081e8b2fea14 2021-07-12T00:15:27,375 Removed pybedtools==0.7.9 from https://files.pythonhosted.org/packages/7c/66/8aecffd830eddbd05c1c3e737f87220cef9f2a8358f1d692f85b30269520/pybedtools-0.7.9.tar.gz#sha256=e9134d7dc3de41b90126df633fe3aa854a0427d7ada834dc8681081e8b2fea14 from build tracker '/tmp/pip-req-tracker-juhhirzl' 2021-07-12T00:15:27,379 Created temporary directory: /tmp/pip-unpack-qxbiibch 2021-07-12T00:15:27,380 Building wheels for collected packages: pybedtools 2021-07-12T00:15:27,384 Created temporary directory: /tmp/pip-wheel-cyqd7dzo 2021-07-12T00:15:27,384 Building wheel for pybedtools (setup.py): started 2021-07-12T00:15:27,385 Destination directory: /tmp/pip-wheel-cyqd7dzo 2021-07-12T00:15:27,385 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-10u_aw_n/pybedtools_7d0a80da8bc34859a4c6b66354c02e8a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-10u_aw_n/pybedtools_7d0a80da8bc34859a4c6b66354c02e8a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-cyqd7dzo 2021-07-12T00:15:28,504 running bdist_wheel 2021-07-12T00:15:28,505 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2021-07-12T00:15:28,507 running build 2021-07-12T00:15:28,507 running build_py 2021-07-12T00:15:28,649 creating build 2021-07-12T00:15:28,650 creating build/lib.linux-armv7l-3.9 2021-07-12T00:15:28,650 creating build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,651 copying pybedtools/logger.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,653 copying pybedtools/__main__.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,655 copying pybedtools/parallel.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,657 copying pybedtools/filenames.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,659 copying pybedtools/genome_registry.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,663 copying pybedtools/settings.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,665 copying pybedtools/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,667 copying pybedtools/stats.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,669 copying pybedtools/bedtool.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,673 copying pybedtools/version.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,675 copying pybedtools/helpers.py -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:28,679 creating build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,680 copying pybedtools/test/test_scripts.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,683 copying pybedtools/test/regression_tests.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,685 copying pybedtools/test/test_iter.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,687 copying pybedtools/test/test_cbedtools.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,690 copying pybedtools/test/tfuncs.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,692 copying pybedtools/test/test_helpers.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,694 copying pybedtools/test/test_gzip_support.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,697 copying pybedtools/test/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,698 copying pybedtools/test/test1.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,703 copying pybedtools/test/test_len_leak.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,705 copying pybedtools/test/test_contrib.py -> build/lib.linux-armv7l-3.9/pybedtools/test 2021-07-12T00:15:28,708 creating build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-12T00:15:28,709 copying pybedtools/contrib/venn_maker.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-12T00:15:28,712 copying pybedtools/contrib/plotting.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-12T00:15:28,715 copying pybedtools/contrib/intersection_matrix.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-12T00:15:28,718 copying pybedtools/contrib/bigbed.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-12T00:15:28,720 copying pybedtools/contrib/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-12T00:15:28,722 copying pybedtools/contrib/classifier.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-12T00:15:28,725 copying pybedtools/contrib/long_range_interaction.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-12T00:15:28,727 copying pybedtools/contrib/bigwig.py -> build/lib.linux-armv7l-3.9/pybedtools/contrib 2021-07-12T00:15:28,731 creating build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-12T00:15:28,732 copying pybedtools/scripts/peak_pie.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-12T00:15:28,734 copying pybedtools/scripts/intersection_matrix.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-12T00:15:28,737 copying pybedtools/scripts/venn_gchart.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-12T00:15:28,739 copying pybedtools/scripts/venn_mpl.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-12T00:15:28,741 copying pybedtools/scripts/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-12T00:15:28,743 copying pybedtools/scripts/py_ms_example.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-12T00:15:28,745 copying pybedtools/scripts/intron_exon_reads.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-12T00:15:28,747 copying pybedtools/scripts/annotate.py -> build/lib.linux-armv7l-3.9/pybedtools/scripts 2021-07-12T00:15:28,750 creating build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,751 copying pybedtools/test/data/__init__.py -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,767 copying pybedtools/test/data/vcf-stderr-test.vcf -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,770 copying pybedtools/test/data/gdc.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,773 copying pybedtools/test/data/gdc.sorted.bam.bai -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,775 copying pybedtools/test/data/gdc.sorted.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,777 copying pybedtools/test/data/expand_test.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,779 copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,783 copying pybedtools/test/data/tag_test2.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,786 copying pybedtools/test/data/venn.b.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,788 copying pybedtools/test/data/d.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,790 copying pybedtools/test/data/bedpe.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,793 copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,797 copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,811 copying pybedtools/test/data/c.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,814 copying pybedtools/test/data/gdc.gff.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,816 copying pybedtools/test/data/multibamcov_test.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,819 copying pybedtools/test/data/reads.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,821 copying pybedtools/test/data/a.igv_script -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,824 copying pybedtools/test/data/issue_121.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,826 copying pybedtools/test/data/gdc.50.200.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,829 copying pybedtools/test/data/small.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,832 copying pybedtools/test/data/v.vcf -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,834 copying pybedtools/test/data/test_tsses.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,837 copying pybedtools/test/data/venn.c.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,839 copying pybedtools/test/data/x.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,882 copying pybedtools/test/data/gdc.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,884 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,887 copying pybedtools/test/data/x.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,950 copying pybedtools/test/data/bedpe2.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,953 copying pybedtools/test/data/gdc.1.100.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,955 copying pybedtools/test/data/mm9.bed12 -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,957 copying pybedtools/test/data/test.fa.fai -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,960 copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,965 copying pybedtools/test/data/hg19.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,973 copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,979 copying pybedtools/test/data/a.links.html -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:28,983 copying pybedtools/test/data/snps.bed.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,157 copying pybedtools/test/data/test_bedpe.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,159 copying pybedtools/test/data/1000genomes-example.vcf -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,161 copying pybedtools/test/data/democonfig.yaml -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,164 copying pybedtools/test/data/vcf-stderr-test.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,166 copying pybedtools/test/data/y.bam -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,169 copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,172 copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,177 copying pybedtools/test/data/m1.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,180 copying pybedtools/test/data/tag_test1.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,182 copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,198 copying pybedtools/test/data/gdc.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,201 copying pybedtools/test/data/a.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,203 copying pybedtools/test/data/hg38-base.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,205 copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,210 copying pybedtools/test/data/small.fastq -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,212 copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,218 copying pybedtools/test/data/164.gtf -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,220 copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,225 copying pybedtools/test/data/hg38-problem.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,227 copying pybedtools/test/data/b.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,229 copying pybedtools/test/data/test.fa -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,232 copying pybedtools/test/data/gdc.50.200.bam.bai -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,234 copying pybedtools/test/data/gdc.1.100.bam.bai -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,236 copying pybedtools/test/data/test_peaks.bed -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,238 copying pybedtools/test/data/exons.gff -> build/lib.linux-armv7l-3.9/pybedtools/test/data 2021-07-12T00:15:29,240 copying pybedtools/featurefuncs.pyx -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:29,243 copying pybedtools/cbedtools.pyx -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:29,246 copying pybedtools/_Window.pyx -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:29,249 copying pybedtools/cbedtools.pxd -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:29,251 copying pybedtools/featurefuncs.cxx -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:29,264 copying pybedtools/cbedtools.cxx -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:29,286 copying pybedtools/_Window.c -> build/lib.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:29,299 running build_ext 2021-07-12T00:15:29,304 building 'pybedtools.cbedtools' extension 2021-07-12T00:15:29,305 creating build/temp.linux-armv7l-3.9 2021-07-12T00:15:29,305 creating build/temp.linux-armv7l-3.9/pybedtools 2021-07-12T00:15:29,306 creating build/temp.linux-armv7l-3.9/src 2021-07-12T00:15:29,306 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cxx -o build/temp.linux-armv7l-3.9/pybedtools/cbedtools.o 2021-07-12T00:15:31,727 pybedtools/cbedtools.cxx: In function ‘PyObject* PyInit_cbedtools()’: 2021-07-12T00:15:31,728 pybedtools/cbedtools.cxx:15125:47: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-12T00:15:31,728 15125 | __pyx_type_10pybedtools_9cbedtools_Interval.tp_print = 0; 2021-07-12T00:15:31,728 | ^~~~~~~~ 2021-07-12T00:15:31,729 pybedtools/cbedtools.cxx:15140:55: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-12T00:15:31,729 15140 | __pyx_type_10pybedtools_9cbedtools_IntervalIterator.tp_print = 0; 2021-07-12T00:15:31,729 | ^~~~~~~~ 2021-07-12T00:15:31,729 pybedtools/cbedtools.cxx:15144:51: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’ 2021-07-12T00:15:31,729 15144 | __pyx_type_10pybedtools_9cbedtools_IntervalFile.tp_print = 0; 2021-07-12T00:15:31,730 | ^~~~~~~~ 2021-07-12T00:15:31,765 pybedtools/cbedtools.cxx: In function ‘PyObject* __Pyx_decode_c_bytes(const char*, Py_ssize_t, Py_ssize_t, Py_ssize_t, const char*, const char*, PyObject* (*)(const char*, Py_ssize_t, const char*))’: 2021-07-12T00:15:31,765 pybedtools/cbedtools.cxx:15952:45: warning: ‘PyObject* PyUnicode_FromUnicode(const Py_UNICODE*, Py_ssize_t)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,765 15952 | return PyUnicode_FromUnicode(NULL, 0); 2021-07-12T00:15:31,765 | ^ 2021-07-12T00:15:31,766 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T00:15:31,766 from /usr/include/python3.9/Python.h:97, 2021-07-12T00:15:31,766 from pybedtools/cbedtools.cxx:4: 2021-07-12T00:15:31,766 /usr/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here 2021-07-12T00:15:31,766 551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode( 2021-07-12T00:15:31,766 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,767 pybedtools/cbedtools.cxx: In function ‘int __Pyx_ParseOptionalKeywords(PyObject*, PyObject***, PyObject*, PyObject**, Py_ssize_t, const char*)’: 2021-07-12T00:15:31,768 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,768 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-12T00:15:31,768 | ^ 2021-07-12T00:15:31,768 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-12T00:15:31,768 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-12T00:15:31,768 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,768 pybedtools/cbedtools.cxx:16024:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,768 16024 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,769 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,769 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:15:31,769 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:15:31,769 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,769 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,769 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-12T00:15:31,770 | ^ 2021-07-12T00:15:31,770 pybedtools/cbedtools.cxx:16024:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,770 16024 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,770 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,770 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T00:15:31,770 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T00:15:31,770 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,770 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,771 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-12T00:15:31,771 | ^ 2021-07-12T00:15:31,771 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-12T00:15:31,771 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-12T00:15:31,771 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,771 pybedtools/cbedtools.cxx:16024:22: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,771 16024 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,772 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,772 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:15:31,772 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:15:31,772 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,772 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,772 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-12T00:15:31,772 | ^ 2021-07-12T00:15:31,772 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-12T00:15:31,773 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-12T00:15:31,773 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,773 pybedtools/cbedtools.cxx:16024:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,773 16024 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,773 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,773 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:15:31,773 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:15:31,774 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,774 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,774 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-12T00:15:31,774 | ^ 2021-07-12T00:15:31,774 pybedtools/cbedtools.cxx:16024:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,774 16024 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,774 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,774 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T00:15:31,775 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T00:15:31,775 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,775 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,775 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-12T00:15:31,775 | ^ 2021-07-12T00:15:31,775 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-12T00:15:31,775 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-12T00:15:31,775 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,776 pybedtools/cbedtools.cxx:16024:52: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,776 16024 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,776 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,776 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:15:31,776 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:15:31,776 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,776 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,777 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-12T00:15:31,777 | ^ 2021-07-12T00:15:31,777 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-12T00:15:31,777 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-12T00:15:31,777 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,777 pybedtools/cbedtools.cxx:16040:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,777 16040 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,777 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,778 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:15:31,778 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:15:31,778 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,778 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,778 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-12T00:15:31,778 | ^ 2021-07-12T00:15:31,778 pybedtools/cbedtools.cxx:16040:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,778 16040 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,779 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,779 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T00:15:31,779 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T00:15:31,779 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,779 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,779 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-12T00:15:31,779 | ^ 2021-07-12T00:15:31,779 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-12T00:15:31,780 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-12T00:15:31,780 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,780 pybedtools/cbedtools.cxx:16040:26: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,780 16040 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,780 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,780 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:15:31,780 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:15:31,781 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,781 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,781 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-12T00:15:31,781 | ^ 2021-07-12T00:15:31,781 /usr/include/python3.9/cpython/unicodeobject.h:261:7: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-12T00:15:31,781 261 | PyUnicode_WSTR_LENGTH(op) : \ 2021-07-12T00:15:31,781 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,781 pybedtools/cbedtools.cxx:16040:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,782 16040 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,782 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,782 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:15:31,782 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:15:31,782 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,782 /usr/include/python3.9/cpython/unicodeobject.h:262:52: warning: ‘Py_UNICODE* PyUnicode_AsUnicode(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,782 262 | ((void)PyUnicode_AsUnicode(_PyObject_CAST(op)),\ 2021-07-12T00:15:31,783 | ^ 2021-07-12T00:15:31,783 pybedtools/cbedtools.cxx:16040:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,783 16040 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,783 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,783 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T00:15:31,783 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T00:15:31,783 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,783 /usr/include/python3.9/cpython/unicodeobject.h:451:75: warning: ‘Py_ssize_t _PyUnicode_get_wstr_length(PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,784 451 | #define PyUnicode_WSTR_LENGTH(op) _PyUnicode_get_wstr_length((PyObject*)op) 2021-07-12T00:15:31,784 | ^ 2021-07-12T00:15:31,784 /usr/include/python3.9/cpython/unicodeobject.h:264:8: note: in expansion of macro ‘PyUnicode_WSTR_LENGTH’ 2021-07-12T00:15:31,784 264 | PyUnicode_WSTR_LENGTH(op))) 2021-07-12T00:15:31,784 | ^~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,784 pybedtools/cbedtools.cxx:16040:59: note: in expansion of macro ‘PyUnicode_GET_SIZE’ 2021-07-12T00:15:31,784 16040 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T00:15:31,784 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,785 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T00:15:31,785 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T00:15:31,785 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,800 pybedtools/cbedtools.cxx: In function ‘void __Pyx__ExceptionSave(PyThreadState*, PyObject**, PyObject**, PyObject**)’: 2021-07-12T00:15:31,800 pybedtools/cbedtools.cxx:16589:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T00:15:31,800 16589 | *type = tstate->exc_type; 2021-07-12T00:15:31,800 | ^~~~~~~~ 2021-07-12T00:15:31,800 | curexc_type 2021-07-12T00:15:31,801 pybedtools/cbedtools.cxx:16590:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T00:15:31,801 16590 | *value = tstate->exc_value; 2021-07-12T00:15:31,801 | ^~~~~~~~~ 2021-07-12T00:15:31,801 | curexc_value 2021-07-12T00:15:31,801 pybedtools/cbedtools.cxx:16591:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T00:15:31,801 16591 | *tb = tstate->exc_traceback; 2021-07-12T00:15:31,801 | ^~~~~~~~~~~~~ 2021-07-12T00:15:31,801 | curexc_traceback 2021-07-12T00:15:31,802 pybedtools/cbedtools.cxx: In function ‘void __Pyx__ExceptionReset(PyThreadState*, PyObject*, PyObject*, PyObject*)’: 2021-07-12T00:15:31,802 pybedtools/cbedtools.cxx:16598:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T00:15:31,802 16598 | tmp_type = tstate->exc_type; 2021-07-12T00:15:31,802 | ^~~~~~~~ 2021-07-12T00:15:31,802 | curexc_type 2021-07-12T00:15:31,802 pybedtools/cbedtools.cxx:16599:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T00:15:31,802 16599 | tmp_value = tstate->exc_value; 2021-07-12T00:15:31,803 | ^~~~~~~~~ 2021-07-12T00:15:31,803 | curexc_value 2021-07-12T00:15:31,803 pybedtools/cbedtools.cxx:16600:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T00:15:31,803 16600 | tmp_tb = tstate->exc_traceback; 2021-07-12T00:15:31,803 | ^~~~~~~~~~~~~ 2021-07-12T00:15:31,803 | curexc_traceback 2021-07-12T00:15:31,803 pybedtools/cbedtools.cxx:16601:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T00:15:31,803 16601 | tstate->exc_type = type; 2021-07-12T00:15:31,804 | ^~~~~~~~ 2021-07-12T00:15:31,804 | curexc_type 2021-07-12T00:15:31,804 pybedtools/cbedtools.cxx:16602:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T00:15:31,804 16602 | tstate->exc_value = value; 2021-07-12T00:15:31,804 | ^~~~~~~~~ 2021-07-12T00:15:31,804 | curexc_value 2021-07-12T00:15:31,804 pybedtools/cbedtools.cxx:16603:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T00:15:31,805 16603 | tstate->exc_traceback = tb; 2021-07-12T00:15:31,805 | ^~~~~~~~~~~~~ 2021-07-12T00:15:31,805 | curexc_traceback 2021-07-12T00:15:31,822 pybedtools/cbedtools.cxx: In function ‘PyObject* __Pyx_CyFunction_Call(PyObject*, PyObject*, PyObject*)’: 2021-07-12T00:15:31,823 pybedtools/cbedtools.cxx:17159:39: warning: ‘PyObject* PyCFunction_Call(PyObject*, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,823 17159 | return PyCFunction_Call(func, arg, kw); 2021-07-12T00:15:31,823 | ^ 2021-07-12T00:15:31,823 In file included from /usr/include/python3.9/Python.h:111, 2021-07-12T00:15:31,823 from pybedtools/cbedtools.cxx:4: 2021-07-12T00:15:31,824 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-12T00:15:31,824 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-12T00:15:31,824 | ^~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,824 pybedtools/cbedtools.cxx: In function ‘int __pyx_CyFunction_init()’: 2021-07-12T00:15:31,824 pybedtools/cbedtools.cxx:17224:41: warning: ‘PyObject* PyCFunction_Call(PyObject*, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,824 17224 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2021-07-12T00:15:31,825 | ^~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,825 In file included from /usr/include/python3.9/Python.h:111, 2021-07-12T00:15:31,825 from pybedtools/cbedtools.cxx:4: 2021-07-12T00:15:31,825 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-12T00:15:31,825 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-12T00:15:31,825 | ^~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,825 pybedtools/cbedtools.cxx:17224:41: warning: ‘PyObject* PyCFunction_Call(PyObject*, PyObject*, PyObject*)’ is deprecated [-Wdeprecated-declarations] 2021-07-12T00:15:31,826 17224 | __pyx_CyFunctionType_type.tp_call = PyCFunction_Call; 2021-07-12T00:15:31,826 | ^~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,826 In file included from /usr/include/python3.9/Python.h:111, 2021-07-12T00:15:31,826 from pybedtools/cbedtools.cxx:4: 2021-07-12T00:15:31,826 /usr/include/python3.9/methodobject.h:33:43: note: declared here 2021-07-12T00:15:31,826 33 | Py_DEPRECATED(3.9) PyAPI_FUNC(PyObject *) PyCFunction_Call(PyObject *, PyObject *, PyObject *); 2021-07-12T00:15:31,826 | ^~~~~~~~~~~~~~~~ 2021-07-12T00:15:31,831 pybedtools/cbedtools.cxx: In function ‘int __Pyx__GetException(PyThreadState*, PyObject**, PyObject**, PyObject**)’: 2021-07-12T00:15:31,831 pybedtools/cbedtools.cxx:17476:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T00:15:31,832 17476 | tmp_type = tstate->exc_type; 2021-07-12T00:15:31,832 | ^~~~~~~~ 2021-07-12T00:15:31,832 | curexc_type 2021-07-12T00:15:31,832 pybedtools/cbedtools.cxx:17477:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T00:15:31,832 17477 | tmp_value = tstate->exc_value; 2021-07-12T00:15:31,832 | ^~~~~~~~~ 2021-07-12T00:15:31,833 | curexc_value 2021-07-12T00:15:31,833 pybedtools/cbedtools.cxx:17478:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T00:15:31,833 17478 | tmp_tb = tstate->exc_traceback; 2021-07-12T00:15:31,833 | ^~~~~~~~~~~~~ 2021-07-12T00:15:31,833 | curexc_traceback 2021-07-12T00:15:31,834 pybedtools/cbedtools.cxx:17479:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T00:15:31,834 17479 | tstate->exc_type = local_type; 2021-07-12T00:15:31,834 | ^~~~~~~~ 2021-07-12T00:15:31,834 | curexc_type 2021-07-12T00:15:31,834 pybedtools/cbedtools.cxx:17480:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T00:15:31,834 17480 | tstate->exc_value = local_value; 2021-07-12T00:15:31,834 | ^~~~~~~~~ 2021-07-12T00:15:31,835 | curexc_value 2021-07-12T00:15:31,835 pybedtools/cbedtools.cxx:17481:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T00:15:31,835 17481 | tstate->exc_traceback = local_tb; 2021-07-12T00:15:31,835 | ^~~~~~~~~~~~~ 2021-07-12T00:15:31,835 | curexc_traceback 2021-07-12T00:15:31,860 pybedtools/cbedtools.cxx: In function ‘void __Pyx__ExceptionSwap(PyThreadState*, PyObject**, PyObject**, PyObject**)’: 2021-07-12T00:15:31,861 pybedtools/cbedtools.cxx:18012:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T00:15:31,861 18012 | tmp_type = tstate->exc_type; 2021-07-12T00:15:31,861 | ^~~~~~~~ 2021-07-12T00:15:31,861 | curexc_type 2021-07-12T00:15:31,861 pybedtools/cbedtools.cxx:18013:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T00:15:31,861 18013 | tmp_value = tstate->exc_value; 2021-07-12T00:15:31,862 | ^~~~~~~~~ 2021-07-12T00:15:31,862 | curexc_value 2021-07-12T00:15:31,862 pybedtools/cbedtools.cxx:18014:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T00:15:31,862 18014 | tmp_tb = tstate->exc_traceback; 2021-07-12T00:15:31,862 | ^~~~~~~~~~~~~ 2021-07-12T00:15:31,862 | curexc_traceback 2021-07-12T00:15:31,862 pybedtools/cbedtools.cxx:18015:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T00:15:31,862 18015 | tstate->exc_type = *type; 2021-07-12T00:15:31,863 | ^~~~~~~~ 2021-07-12T00:15:31,863 | curexc_type 2021-07-12T00:15:31,863 pybedtools/cbedtools.cxx:18016:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T00:15:31,863 18016 | tstate->exc_value = *value; 2021-07-12T00:15:31,863 | ^~~~~~~~~ 2021-07-12T00:15:31,863 | curexc_value 2021-07-12T00:15:31,863 pybedtools/cbedtools.cxx:18017:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T00:15:31,864 18017 | tstate->exc_traceback = *tb; 2021-07-12T00:15:31,864 | ^~~~~~~~~~~~~ 2021-07-12T00:15:31,864 | curexc_traceback 2021-07-12T00:15:32,457 pybedtools/cbedtools.cxx: At global scope: 2021-07-12T00:15:32,457 pybedtools/cbedtools.cxx:8392:12: warning: ‘int __pyx_pw_10pybedtools_9cbedtools_8Interval_25__nonzero__(PyObject*)’ defined but not used [-Wunused-function] 2021-07-12T00:15:32,457 8392 | static int __pyx_pw_10pybedtools_9cbedtools_8Interval_25__nonzero__(PyObject *__pyx_v_self) { 2021-07-12T00:15:32,457 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T00:15:32,477 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-12T00:15:32,554 Building wheel for pybedtools (setup.py): finished with status 'error' 2021-07-12T00:15:32,554 ERROR: Failed building wheel for pybedtools 2021-07-12T00:15:32,555 Running setup.py clean for pybedtools 2021-07-12T00:15:32,555 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-10u_aw_n/pybedtools_7d0a80da8bc34859a4c6b66354c02e8a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-10u_aw_n/pybedtools_7d0a80da8bc34859a4c6b66354c02e8a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-12T00:15:33,654 running clean 2021-07-12T00:15:33,766 Failed to build pybedtools 2021-07-12T00:15:33,767 ERROR: Failed to build one or more wheels 2021-07-12T00:15:33,768 Exception information: 2021-07-12T00:15:33,768 Traceback (most recent call last): 2021-07-12T00:15:33,768 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-12T00:15:33,768 status = self.run(options, args) 2021-07-12T00:15:33,768 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-12T00:15:33,768 return func(self, options, args) 2021-07-12T00:15:33,768 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-12T00:15:33,768 raise CommandError( 2021-07-12T00:15:33,768 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-12T00:15:33,770 Removed build tracker: '/tmp/pip-req-tracker-juhhirzl'