2021-07-12T01:24:02,725 Created temporary directory: /tmp/pip-ephem-wheel-cache-wu5jyp04 2021-07-12T01:24:02,728 Created temporary directory: /tmp/pip-req-tracker-fheuee29 2021-07-12T01:24:02,728 Initialized build tracking at /tmp/pip-req-tracker-fheuee29 2021-07-12T01:24:02,729 Created build tracker: /tmp/pip-req-tracker-fheuee29 2021-07-12T01:24:02,729 Entered build tracker: /tmp/pip-req-tracker-fheuee29 2021-07-12T01:24:02,729 Created temporary directory: /tmp/pip-wheel-3lfxyaox 2021-07-12T01:24:02,759 1 location(s) to search for versions of sshmm: 2021-07-12T01:24:02,759 * https://pypi.org/simple/sshmm/ 2021-07-12T01:24:02,760 Fetching project page and analyzing links: https://pypi.org/simple/sshmm/ 2021-07-12T01:24:02,760 Getting page https://pypi.org/simple/sshmm/ 2021-07-12T01:24:02,762 Found index url https://pypi.org/simple 2021-07-12T01:24:02,873 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/4d/4e5c9ec7dbdb161e2596052e03f9e28b749a3ea81e27334ed1097c0b7f52/sshmm-1.0.0b1-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=cf4f7255b766849c8521510dd9a1c87009630202593d7e2eae5e2dea95625b88 (from https://pypi.org/simple/sshmm/) 2021-07-12T01:24:02,873 Found link https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b (from https://pypi.org/simple/sshmm/), version: 1.0.0b1 2021-07-12T01:24:02,873 Found link https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 (from https://pypi.org/simple/sshmm/), version: 1.0.0b2 2021-07-12T01:24:02,874 Found link https://files.pythonhosted.org/packages/22/24/736193beb8c98f3d0d2d65163ea1cb195ef0ef8748b31939c64722ecdf53/sshmm-1.0.0b3.tar.gz#sha256=dde85e5c49a4e447b2fe2cb0a3b4c95f2e1c50fbc8e9306f0855522deefe6db6 (from https://pypi.org/simple/sshmm/), version: 1.0.0b3 2021-07-12T01:24:02,874 Found link https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 (from https://pypi.org/simple/sshmm/), version: 1.0.0b4 2021-07-12T01:24:02,874 Found link https://files.pythonhosted.org/packages/e2/72/ce482d27cd639d9a0ec3b68ea03a3944b82cbccaf1cc1100c910fe83cf9a/sshmm-1.0.0.tar.gz#sha256=dd45c82082c1598305f9f10974338eb654189736288301384c7fe4332db9de55 (from https://pypi.org/simple/sshmm/), version: 1.0.0 2021-07-12T01:24:02,875 Found link https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa (from https://pypi.org/simple/sshmm/), version: 1.0.1 2021-07-12T01:24:02,875 Found link https://files.pythonhosted.org/packages/a0/74/f289f8598a645cfc2db58a5b591750f6cdc8b080423e57b4263557f4cdab/sshmm-1.0.2.tar.gz#sha256=95b299baaf2a20b3a214026ddb5be7f827b7754d5760807a2f81e7262011e7f5 (from https://pypi.org/simple/sshmm/), version: 1.0.2 2021-07-12T01:24:02,875 Found link https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f (from https://pypi.org/simple/sshmm/), version: 1.0.4 2021-07-12T01:24:02,875 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6d/93/d1879de96986253da47c110755bcc15eda8acfe94c3f5e7185dc6a642c0c/sshmm-1.0.5-py2.7-linux-x86_64.egg#sha256=86d70f06238168852b0342ea733f6893e8baa49be151aab77d6f49cbab6ff227 (from https://pypi.org/simple/sshmm/) 2021-07-12T01:24:02,876 Found link https://files.pythonhosted.org/packages/e1/1c/d8d53d575807110582f43da63707146463dd1ba6402f93004d6750f17223/sshmm-1.0.5.tar.gz#sha256=37192b827f23fa07812a70eb5cba98beaa908e6ac91182a7a37fc782f9a76d4b (from https://pypi.org/simple/sshmm/), version: 1.0.5 2021-07-12T01:24:02,876 Found link https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 (from https://pypi.org/simple/sshmm/), version: 1.0.6 2021-07-12T01:24:02,876 Found link https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 (from https://pypi.org/simple/sshmm/), version: 1.0.7 2021-07-12T01:24:02,876 Skipping link: not a file: https://pypi.org/simple/sshmm/ 2021-07-12T01:24:02,879 Given no hashes to check 1 links for project 'sshmm': discarding no candidates 2021-07-12T01:24:02,898 Collecting sshmm==1.0.0b4 2021-07-12T01:24:02,899 Created temporary directory: /tmp/pip-unpack-i88hwl3u 2021-07-12T01:24:03,207 Downloading sshmm-1.0.0b4.tar.gz (101 kB) 2021-07-12T01:24:03,317 Added sshmm==1.0.0b4 from https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 to build tracker '/tmp/pip-req-tracker-fheuee29' 2021-07-12T01:24:03,318 Running setup.py (path:/tmp/pip-wheel-3lfxyaox/sshmm_52c5af4d89054a2381e3318d3028745a/setup.py) egg_info for package sshmm 2021-07-12T01:24:03,319 Created temporary directory: /tmp/pip-pip-egg-info-jhmwewd2 2021-07-12T01:24:03,319 Running command python setup.py egg_info 2021-07-12T01:24:04,391 running egg_info 2021-07-12T01:24:04,393 creating /tmp/pip-pip-egg-info-jhmwewd2/sshmm.egg-info 2021-07-12T01:24:04,394 writing /tmp/pip-pip-egg-info-jhmwewd2/sshmm.egg-info/PKG-INFO 2021-07-12T01:24:04,396 writing dependency_links to /tmp/pip-pip-egg-info-jhmwewd2/sshmm.egg-info/dependency_links.txt 2021-07-12T01:24:04,398 writing requirements to /tmp/pip-pip-egg-info-jhmwewd2/sshmm.egg-info/requires.txt 2021-07-12T01:24:04,399 writing top-level names to /tmp/pip-pip-egg-info-jhmwewd2/sshmm.egg-info/top_level.txt 2021-07-12T01:24:04,401 writing manifest file '/tmp/pip-pip-egg-info-jhmwewd2/sshmm.egg-info/SOURCES.txt' 2021-07-12T01:24:04,788 reading manifest file '/tmp/pip-pip-egg-info-jhmwewd2/sshmm.egg-info/SOURCES.txt' 2021-07-12T01:24:04,794 writing manifest file '/tmp/pip-pip-egg-info-jhmwewd2/sshmm.egg-info/SOURCES.txt' 2021-07-12T01:24:04,882 Source in /tmp/pip-wheel-3lfxyaox/sshmm_52c5af4d89054a2381e3318d3028745a has version 1.0.0b4, which satisfies requirement sshmm==1.0.0b4 from https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 2021-07-12T01:24:04,883 Removed sshmm==1.0.0b4 from https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 from build tracker '/tmp/pip-req-tracker-fheuee29' 2021-07-12T01:24:04,890 Created temporary directory: /tmp/pip-unpack-2mc4ed4a 2021-07-12T01:24:04,891 Building wheels for collected packages: sshmm 2021-07-12T01:24:04,894 Created temporary directory: /tmp/pip-wheel-8_xceagq 2021-07-12T01:24:04,895 Building wheel for sshmm (setup.py): started 2021-07-12T01:24:04,895 Destination directory: /tmp/pip-wheel-8_xceagq 2021-07-12T01:24:04,896 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-3lfxyaox/sshmm_52c5af4d89054a2381e3318d3028745a/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-3lfxyaox/sshmm_52c5af4d89054a2381e3318d3028745a/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8_xceagq 2021-07-12T01:24:05,986 running bdist_wheel 2021-07-12T01:24:06,145 running build 2021-07-12T01:24:06,145 running build_py 2021-07-12T01:24:06,283 creating build 2021-07-12T01:24:06,283 creating build/lib.linux-armv7l-3.9 2021-07-12T01:24:06,284 creating build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,285 copying sshmm/SimpleQueue.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,287 copying sshmm/pwm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,289 copying sshmm/log.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,291 copying sshmm/MyHMM.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,293 copying sshmm/setup.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,295 copying sshmm/structure_prediction.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,297 copying sshmm/__init__.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,299 copying sshmm/seq_hmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,301 copying sshmm/seqstructhmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,303 copying sshmm/sequence_container.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,308 creating build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T01:24:06,308 copying sshmm/img/U.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T01:24:06,312 copying sshmm/img/G.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T01:24:06,315 copying sshmm/img/A.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T01:24:06,318 copying sshmm/img/T.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T01:24:06,321 copying sshmm/img/C.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T01:24:06,324 running build_ext 2021-07-12T01:24:06,330 building 'cEstimate' extension 2021-07-12T01:24:06,331 creating build/temp.linux-armv7l-3.9 2021-07-12T01:24:06,331 creating build/temp.linux-armv7l-3.9/sshmm 2021-07-12T01:24:06,332 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c sshmm/cEstimate.c -o build/temp.linux-armv7l-3.9/sshmm/cEstimate.o 2021-07-12T01:24:06,737 sshmm/cEstimate.c: In function ‘__pyx_pf_12seqstructhmm_9cEstimate_cEstimate’: 2021-07-12T01:24:06,737 sshmm/cEstimate.c:926:17: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration] 2021-07-12T01:24:06,737 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-12T01:24:06,738 | ^~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,738 sshmm/cEstimate.c:926:15: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-12T01:24:06,738 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-12T01:24:06,738 | ^ 2021-07-12T01:24:06,753 sshmm/cEstimate.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-12T01:24:06,754 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,754 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,755 | ^ 2021-07-12T01:24:06,755 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,755 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,755 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,755 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T01:24:06,755 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T01:24:06,756 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,756 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,756 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,756 | ^ 2021-07-12T01:24:06,756 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,757 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,757 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,757 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T01:24:06,757 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T01:24:06,757 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,757 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,757 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,757 | ^ 2021-07-12T01:24:06,758 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,758 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,758 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,758 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T01:24:06,758 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T01:24:06,758 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,758 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,759 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,759 | ^ 2021-07-12T01:24:06,759 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,759 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,759 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,759 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T01:24:06,759 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T01:24:06,759 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,760 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,760 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,760 | ^ 2021-07-12T01:24:06,760 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,760 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,760 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,760 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T01:24:06,761 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T01:24:06,761 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,761 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,761 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,761 | ^ 2021-07-12T01:24:06,761 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,761 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,762 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,762 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T01:24:06,762 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T01:24:06,762 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,763 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,763 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,763 | ^ 2021-07-12T01:24:06,763 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,763 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,763 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,763 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T01:24:06,764 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T01:24:06,764 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,764 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,764 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,764 | ^ 2021-07-12T01:24:06,764 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,764 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,764 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,765 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T01:24:06,765 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T01:24:06,765 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,765 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,765 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,765 | ^ 2021-07-12T01:24:06,765 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,766 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,766 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,766 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T01:24:06,766 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T01:24:06,766 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,766 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,766 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,767 | ^ 2021-07-12T01:24:06,767 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,767 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,767 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,767 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T01:24:06,767 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T01:24:06,767 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,767 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,768 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,768 | ^ 2021-07-12T01:24:06,768 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,768 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,768 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,768 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T01:24:06,768 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T01:24:06,768 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:06,769 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T01:24:06,769 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T01:24:06,769 | ^ 2021-07-12T01:24:06,769 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T01:24:06,769 from /usr/include/python3.9/Python.h:97, 2021-07-12T01:24:06,769 from sshmm/cEstimate.c:24: 2021-07-12T01:24:06,769 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T01:24:06,770 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T01:24:06,770 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T01:24:07,922 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/sshmm/cEstimate.o -o build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so 2021-07-12T01:24:08,033 running build_scripts 2021-07-12T01:24:08,034 creating build/scripts-3.9 2021-07-12T01:24:08,035 copying and adjusting bin/preprocess_dataset -> build/scripts-3.9 2021-07-12T01:24:08,038 copying and adjusting bin/train_seqstructhmm -> build/scripts-3.9 2021-07-12T01:24:08,039 copying and adjusting bin/batch_seqstructhmm -> build/scripts-3.9 2021-07-12T01:24:08,041 changing mode of build/scripts-3.9/preprocess_dataset from 644 to 755 2021-07-12T01:24:08,041 changing mode of build/scripts-3.9/train_seqstructhmm from 644 to 755 2021-07-12T01:24:08,041 changing mode of build/scripts-3.9/batch_seqstructhmm from 644 to 755 2021-07-12T01:24:08,051 installing to build/bdist.linux-armv7l/wheel 2021-07-12T01:24:08,052 running install 2021-07-12T01:24:08,053 running install_lib 2021-07-12T01:24:08,059 creating build/bdist.linux-armv7l 2021-07-12T01:24:08,059 creating build/bdist.linux-armv7l/wheel 2021-07-12T01:24:08,060 copying build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-12T01:24:08,066 creating build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,067 copying build/lib.linux-armv7l-3.9/sshmm/SimpleQueue.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,069 copying build/lib.linux-armv7l-3.9/sshmm/pwm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,071 copying build/lib.linux-armv7l-3.9/sshmm/log.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,073 copying build/lib.linux-armv7l-3.9/sshmm/MyHMM.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,075 copying build/lib.linux-armv7l-3.9/sshmm/setup.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,077 copying build/lib.linux-armv7l-3.9/sshmm/structure_prediction.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,079 copying build/lib.linux-armv7l-3.9/sshmm/__init__.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,082 creating build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T01:24:08,083 copying build/lib.linux-armv7l-3.9/sshmm/img/U.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T01:24:08,086 copying build/lib.linux-armv7l-3.9/sshmm/img/G.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T01:24:08,088 copying build/lib.linux-armv7l-3.9/sshmm/img/A.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T01:24:08,091 copying build/lib.linux-armv7l-3.9/sshmm/img/T.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T01:24:08,094 copying build/lib.linux-armv7l-3.9/sshmm/img/C.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T01:24:08,096 copying build/lib.linux-armv7l-3.9/sshmm/seq_hmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,099 copying build/lib.linux-armv7l-3.9/sshmm/seqstructhmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,102 copying build/lib.linux-armv7l-3.9/sshmm/sequence_container.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T01:24:08,105 running install_egg_info 2021-07-12T01:24:08,130 running egg_info 2021-07-12T01:24:08,131 writing sshmm.egg-info/PKG-INFO 2021-07-12T01:24:08,134 writing dependency_links to sshmm.egg-info/dependency_links.txt 2021-07-12T01:24:08,136 writing requirements to sshmm.egg-info/requires.txt 2021-07-12T01:24:08,138 writing top-level names to sshmm.egg-info/top_level.txt 2021-07-12T01:24:08,172 reading manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-12T01:24:08,179 writing manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-12T01:24:08,180 Copying sshmm.egg-info to build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4-py3.9.egg-info 2021-07-12T01:24:08,194 running install_scripts 2021-07-12T01:24:08,255 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4.data 2021-07-12T01:24:08,255 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4.data/scripts 2021-07-12T01:24:08,256 copying build/scripts-3.9/preprocess_dataset -> build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4.data/scripts 2021-07-12T01:24:08,259 copying build/scripts-3.9/batch_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4.data/scripts 2021-07-12T01:24:08,261 copying build/scripts-3.9/train_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4.data/scripts 2021-07-12T01:24:08,262 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4.data/scripts/preprocess_dataset to 755 2021-07-12T01:24:08,263 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4.data/scripts/batch_seqstructhmm to 755 2021-07-12T01:24:08,263 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4.data/scripts/train_seqstructhmm to 755 2021-07-12T01:24:08,286 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.0b4.dist-info/WHEEL 2021-07-12T01:24:08,289 creating '/tmp/pip-wheel-8_xceagq/sshmm-1.0.0b4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T01:24:08,309 adding 'cEstimate.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T01:24:08,315 adding 'sshmm/MyHMM.py' 2021-07-12T01:24:08,316 adding 'sshmm/SimpleQueue.py' 2021-07-12T01:24:08,317 adding 'sshmm/__init__.py' 2021-07-12T01:24:08,319 adding 'sshmm/log.py' 2021-07-12T01:24:08,320 adding 'sshmm/pwm.py' 2021-07-12T01:24:08,322 adding 'sshmm/seq_hmm.py' 2021-07-12T01:24:08,325 adding 'sshmm/seqstructhmm.py' 2021-07-12T01:24:08,327 adding 'sshmm/sequence_container.py' 2021-07-12T01:24:08,328 adding 'sshmm/setup.py' 2021-07-12T01:24:08,329 adding 'sshmm/structure_prediction.py' 2021-07-12T01:24:08,333 adding 'sshmm/img/A.png' 2021-07-12T01:24:08,335 adding 'sshmm/img/C.png' 2021-07-12T01:24:08,338 adding 'sshmm/img/G.png' 2021-07-12T01:24:08,339 adding 'sshmm/img/T.png' 2021-07-12T01:24:08,341 adding 'sshmm/img/U.png' 2021-07-12T01:24:08,344 adding 'sshmm-1.0.0b4.data/scripts/batch_seqstructhmm' 2021-07-12T01:24:08,346 adding 'sshmm-1.0.0b4.data/scripts/preprocess_dataset' 2021-07-12T01:24:08,348 adding 'sshmm-1.0.0b4.data/scripts/train_seqstructhmm' 2021-07-12T01:24:08,350 adding 'sshmm-1.0.0b4.dist-info/METADATA' 2021-07-12T01:24:08,351 adding 'sshmm-1.0.0b4.dist-info/WHEEL' 2021-07-12T01:24:08,352 adding 'sshmm-1.0.0b4.dist-info/top_level.txt' 2021-07-12T01:24:08,353 adding 'sshmm-1.0.0b4.dist-info/RECORD' 2021-07-12T01:24:08,356 removing build/bdist.linux-armv7l/wheel 2021-07-12T01:24:08,454 Building wheel for sshmm (setup.py): finished with status 'done' 2021-07-12T01:24:08,458 Created wheel for sshmm: filename=sshmm-1.0.0b4-cp39-cp39-linux_armv7l.whl size=127348 sha256=d6587c3f285295041ca470b8fab8a183aff6a914ac14311f2794bc0dcd8c0d5e 2021-07-12T01:24:08,458 Stored in directory: /tmp/pip-ephem-wheel-cache-wu5jyp04/wheels/48/cc/db/60aae8f7911fb64217b14591af26c12e9bceac05d2a7199582 2021-07-12T01:24:08,468 Successfully built sshmm 2021-07-12T01:24:08,476 Removed build tracker: '/tmp/pip-req-tracker-fheuee29'