2021-07-12T01:30:11,580 Created temporary directory: /tmp/pip-ephem-wheel-cache-h58wn4k8
2021-07-12T01:30:11,584 Created temporary directory: /tmp/pip-req-tracker-wa0xooh5
2021-07-12T01:30:11,584 Initialized build tracking at /tmp/pip-req-tracker-wa0xooh5
2021-07-12T01:30:11,585 Created build tracker: /tmp/pip-req-tracker-wa0xooh5
2021-07-12T01:30:11,585 Entered build tracker: /tmp/pip-req-tracker-wa0xooh5
2021-07-12T01:30:11,585 Created temporary directory: /tmp/pip-wheel-vl1nj2a4
2021-07-12T01:30:11,614 1 location(s) to search for versions of mikado:
2021-07-12T01:30:11,614 * https://pypi.org/simple/mikado/
2021-07-12T01:30:11,615 Fetching project page and analyzing links: https://pypi.org/simple/mikado/
2021-07-12T01:30:11,615 Getting page https://pypi.org/simple/mikado/
2021-07-12T01:30:11,617 Found index url https://pypi.org/simple
2021-07-12T01:30:11,716   Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1
2021-07-12T01:30:11,717   Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 (from https://pypi.org/simple/mikado/), version: 1.0.0b9
2021-07-12T01:30:11,717   Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab (from https://pypi.org/simple/mikado/), version: 1.0.0b10
2021-07-12T01:30:11,717   Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 (from https://pypi.org/simple/mikado/), version: 1.0
2021-07-12T01:30:11,718   Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e (from https://pypi.org/simple/mikado/), version: 1.1
2021-07-12T01:30:11,718   Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz#sha256=43b2734aee61c437fd6d2c8645e10c1a9f723fa60505e3065bfea1f4a771e44e (from https://pypi.org/simple/mikado/), version: 1.2
2021-07-12T01:30:11,718   Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 (from https://pypi.org/simple/mikado/), version: 1.2.1
2021-07-12T01:30:11,719   Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 (from https://pypi.org/simple/mikado/), version: 1.2.2
2021-07-12T01:30:11,736   Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=86046d7c1d80363ae0bdea8adbaa73a499d288c1540ed7b7ef6cf2df8db2b809 (from https://pypi.org/simple/mikado/)
2021-07-12T01:30:11,736   Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 (from https://pypi.org/simple/mikado/), version: 1.2.4
2021-07-12T01:30:11,736   Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz#sha256=745ffb74e62d1d1e777f1b6fc84acb8aae2f27290d40301fec0971560e6ba054 (from https://pypi.org/simple/mikado/), version: 2.0rc1
2021-07-12T01:30:11,737   Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz#sha256=3cbf2465f9e42dc7a02f8c4aff8625e5421010e3df7a6b3f98d87e82f5534e26 (from https://pypi.org/simple/mikado/), version: 2.0rc2
2021-07-12T01:30:11,737   Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz#sha256=f4736adb1014c70758f12904bf7dfe10e153b9497bdb82903d231540a23b8d57 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0
2021-07-12T01:30:11,738   Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz#sha256=d77bf5ca843d8cea35208c52750d014d704d46889633d5ac0f12edba6b5aa131 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1
2021-07-12T01:30:11,739   Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz#sha256=6c58ccab055f95cdbb0fb0273397ce72186ff7d99fd5ba4bdeb812ea4c18f1a6 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2
2021-07-12T01:30:11,739   Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz#sha256=b8ca7cecead9e30430de2c205e65c961b3d704d9351b85d6108577f9ffaba58f (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0
2021-07-12T01:30:11,740   Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz#sha256=2107de041d57cac81b1ff52da2b1d029f6c66f7fde78adc66cfbafd57a5215b7 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1
2021-07-12T01:30:11,740   Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz#sha256=0892dce8b07c655c63918933aaf4a47292bc5602f6be4b226756106c21c53177 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0
2021-07-12T01:30:11,741   Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz#sha256=2f8d410340e39b0fced63ee523391eae8f18751f3a0910de1cf1a27e1129d210 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1
2021-07-12T01:30:11,741   Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz#sha256=cb9705ff46b6e67279e27ac1836443782e128619b6ea78676364d11a097a21a9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2
2021-07-12T01:30:11,742   Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz#sha256=bdbdbdeb56bab4a4d633a0be36aea1aac3c025763a5d6721c98982ac1bd17bf9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3
2021-07-12T01:30:11,743   Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz#sha256=d7eeecb13334dcfee2e8b484e3aa4c31990a7e1f1e0001cabe5a669ef7c9f433 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4
2021-07-12T01:30:11,743   Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz#sha256=ea10960477612dd0a387b2135ed76dbc23e2957b3241c8726559541b88b9ee2e (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5
2021-07-12T01:30:11,744   Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz#sha256=c785197f0b6e6f8597100a63181a0d39109bec914e9691a0a972a5244da5cd32 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0
2021-07-12T01:30:11,744 Skipping link: not a file: https://pypi.org/simple/mikado/
2021-07-12T01:30:11,749 Given no hashes to check 1 links for project 'mikado': discarding no candidates
2021-07-12T01:30:11,767 Collecting mikado==1.0.0b10
2021-07-12T01:30:11,769   Created temporary directory: /tmp/pip-unpack-o3x2z948
2021-07-12T01:30:11,808   Downloading Mikado-1.0.0b10.tar.gz (17.2 MB)
2021-07-12T01:30:15,250   Added mikado==1.0.0b10 from https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab to build tracker '/tmp/pip-req-tracker-wa0xooh5'
2021-07-12T01:30:15,251     Running setup.py (path:/tmp/pip-wheel-vl1nj2a4/mikado_c3f0ca0b4e8844f0a49bfc11b24f137b/setup.py) egg_info for package mikado
2021-07-12T01:30:15,252     Created temporary directory: /tmp/pip-pip-egg-info-rvcxkv7f
2021-07-12T01:30:15,252     Running command python setup.py egg_info
2021-07-12T01:30:17,011     running egg_info
2021-07-12T01:30:17,014     creating /tmp/pip-pip-egg-info-rvcxkv7f/Mikado.egg-info
2021-07-12T01:30:17,015     writing /tmp/pip-pip-egg-info-rvcxkv7f/Mikado.egg-info/PKG-INFO
2021-07-12T01:30:17,018     writing dependency_links to /tmp/pip-pip-egg-info-rvcxkv7f/Mikado.egg-info/dependency_links.txt
2021-07-12T01:30:17,020     writing entry points to /tmp/pip-pip-egg-info-rvcxkv7f/Mikado.egg-info/entry_points.txt
2021-07-12T01:30:17,021     writing requirements to /tmp/pip-pip-egg-info-rvcxkv7f/Mikado.egg-info/requires.txt
2021-07-12T01:30:17,022     writing top-level names to /tmp/pip-pip-egg-info-rvcxkv7f/Mikado.egg-info/top_level.txt
2021-07-12T01:30:17,023     writing manifest file '/tmp/pip-pip-egg-info-rvcxkv7f/Mikado.egg-info/SOURCES.txt'
2021-07-12T01:30:17,210     reading manifest file '/tmp/pip-pip-egg-info-rvcxkv7f/Mikado.egg-info/SOURCES.txt'
2021-07-12T01:30:17,212     reading manifest template 'MANIFEST.in'
2021-07-12T01:30:18,035     warning: no previously-included files matching '*' found under directory 'docs/'
2021-07-12T01:30:18,035     adding license file 'AUTHORS'
2021-07-12T01:30:18,061     writing manifest file '/tmp/pip-pip-egg-info-rvcxkv7f/Mikado.egg-info/SOURCES.txt'
2021-07-12T01:30:18,157   Source in /tmp/pip-wheel-vl1nj2a4/mikado_c3f0ca0b4e8844f0a49bfc11b24f137b has version 1.0.0b10, which satisfies requirement mikado==1.0.0b10 from https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab
2021-07-12T01:30:18,158   Removed mikado==1.0.0b10 from https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab from build tracker '/tmp/pip-req-tracker-wa0xooh5'
2021-07-12T01:30:18,163 Created temporary directory: /tmp/pip-unpack-r297u542
2021-07-12T01:30:18,163 Building wheels for collected packages: mikado
2021-07-12T01:30:18,168   Created temporary directory: /tmp/pip-wheel-um_iz0yj
2021-07-12T01:30:18,168   Building wheel for mikado (setup.py): started
2021-07-12T01:30:18,169   Destination directory: /tmp/pip-wheel-um_iz0yj
2021-07-12T01:30:18,169   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vl1nj2a4/mikado_c3f0ca0b4e8844f0a49bfc11b24f137b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vl1nj2a4/mikado_c3f0ca0b4e8844f0a49bfc11b24f137b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-um_iz0yj
2021-07-12T01:30:19,944   running bdist_wheel
2021-07-12T01:30:19,949   running build
2021-07-12T01:30:19,949   running build_py
2021-07-12T01:30:20,107   creating build/lib.linux-armv7l-3.9
2021-07-12T01:30:20,108   creating build/lib.linux-armv7l-3.9/Mikado
2021-07-12T01:30:20,109   copying Mikado/__init__.py -> build/lib.linux-armv7l-3.9/Mikado
2021-07-12T01:30:20,111   copying Mikado/exceptions.py -> build/lib.linux-armv7l-3.9/Mikado
2021-07-12T01:30:20,113   creating build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T01:30:20,114   copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T01:30:20,116   copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T01:30:20,117   copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T01:30:20,120   copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T01:30:20,123   creating build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T01:30:20,124   copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T01:30:20,126   copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T01:30:20,129   copying Mikado/picking/picker.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T01:30:20,133   creating build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T01:30:20,133   copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T01:30:20,136   copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T01:30:20,138   copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T01:30:20,140   copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T01:30:20,143   copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T01:30:20,145   copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T01:30:20,147   copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T01:30:20,150   creating build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,151   copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,154   copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,156   copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,158   copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,160   copying Mikado/loci/locus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,163   copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,165   copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,169   copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,172   copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T01:30:20,175   creating build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T01:30:20,176   copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T01:30:20,178   copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T01:30:20,183   copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T01:30:20,186   copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T01:30:20,189   creating build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T01:30:20,189   copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T01:30:20,194   creating build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,195   copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,198   copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,200   copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,202   copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,204   copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,206   copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,208   copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,211   copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,213   copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,215   copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,217   copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,219   copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,221   copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,223   copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,225   copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,228   copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,230   copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,232   copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,235   copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,238   copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,241   copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,244   copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,248   copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,251   copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:20,254   creating build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:20,255   copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:20,258   copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:20,260   copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:20,263   creating build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:20,264   copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:20,267   copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:20,269   copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:20,273   copying Mikado/scales/compare.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:20,276   copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:20,277   copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:20,281   creating build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T01:30:20,282   copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T01:30:20,284   copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T01:30:20,286   copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T01:30:20,290   creating build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T01:30:20,291   copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T01:30:20,293   copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T01:30:20,295   copying Mikado/serializers/external.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T01:30:20,297   copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T01:30:20,301   creating build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T01:30:20,301   copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T01:30:20,304   copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T01:30:20,307   copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T01:30:20,309   copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T01:30:20,311   copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T01:30:20,314   copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T01:30:20,316   copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T01:30:20,321   creating build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,321   copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,325   copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,326   copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,329   copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,330   copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,332   copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,334   copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,336   copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,338   copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T01:30:20,341   creating build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T01:30:20,341   copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T01:30:20,344   copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T01:30:20,347   copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T01:30:20,349   copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T01:30:20,353   copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T01:30:20,358   creating build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T01:30:20,358   copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T01:30:20,361   copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T01:30:20,363   copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T01:30:20,365   copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T01:30:20,367   copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T01:30:20,370   copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T01:30:20,372   copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T01:30:20,375   running egg_info
2021-07-12T01:30:20,389   writing Mikado.egg-info/PKG-INFO
2021-07-12T01:30:20,390   writing dependency_links to Mikado.egg-info/dependency_links.txt
2021-07-12T01:30:20,392   writing entry points to Mikado.egg-info/entry_points.txt
2021-07-12T01:30:20,393   writing requirements to Mikado.egg-info/requires.txt
2021-07-12T01:30:20,394   writing top-level names to Mikado.egg-info/top_level.txt
2021-07-12T01:30:20,412   reading manifest file 'Mikado.egg-info/SOURCES.txt'
2021-07-12T01:30:20,470   reading manifest template 'MANIFEST.in'
2021-07-12T01:30:21,356   warning: no previously-included files matching '*' found under directory 'docs/'
2021-07-12T01:30:21,356   adding license file 'AUTHORS'
2021-07-12T01:30:21,398   writing manifest file 'Mikado.egg-info/SOURCES.txt'
2021-07-12T01:30:21,436   copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T01:30:21,439   copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T01:30:21,441   copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T01:30:21,443   copying Mikado/daijin/local.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T01:30:21,445   copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T01:30:21,448   copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T01:30:21,451   copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,644   copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,646   copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,650   copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,652   copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,655   copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,663   copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,694   copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,731   copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,736   copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,739   copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,741   copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,744   copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,747   copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,751   copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,754   copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,757   copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,760   copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T01:30:21,880   creating build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,881   copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,883   copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,885   copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,887   copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,890   copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,894   copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,897   copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,900   copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,904   copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,907   copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,911   copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,915   copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,920   copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,923   copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,926   copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,930   copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,932   copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,934   copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,937   copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,939   copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,942   copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,945   copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,947   copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,950   copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,952   copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,954   copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,957   copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,959   copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,962   copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,965   copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,968   copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,971   copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,973   copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,975   copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,978   copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,980   copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,983   copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,986   copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,989   copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,991   copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,994   copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,996   copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:21,999   copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,001   copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,004   copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,007   copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,010   copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,012   copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,015   copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,018   copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,020   copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,023   copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,026   copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,030   copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,033   copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,037   copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,040   copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,044   copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,047   copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,050   copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,053   copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,056   copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,059   copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,062   copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,065   copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,068   copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,072   copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,076   copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,080   copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,084   copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,088   copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,091   copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,095   copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,097   copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,100   copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T01:30:22,103   creating build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T01:30:22,104   copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T01:30:22,106   copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T01:30:22,109   copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T01:30:22,112   copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:22,132   copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:22,135   copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:22,142   copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:22,144   copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:22,146   copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:22,160   copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:22,162   copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:22,165   copying Mikado/scales/f1.c -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:22,172   copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:22,174   copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:22,176   copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T01:30:22,179   copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T01:30:22,183   copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T01:30:22,185   copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T01:30:22,187   creating build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T01:30:22,188   copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T01:30:22,190   copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T01:30:22,192   copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T01:30:22,195   copying Mikado/configuration/scoring_files/spombe.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T01:30:22,197   copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T01:30:22,213   running build_ext
2021-07-12T01:30:22,218   building 'Mikado.utilities.overlap' extension
2021-07-12T01:30:22,219   creating build/temp.linux-armv7l-3.9
2021-07-12T01:30:22,219   creating build/temp.linux-armv7l-3.9/Mikado
2021-07-12T01:30:22,220   creating build/temp.linux-armv7l-3.9/Mikado/utilities
2021-07-12T01:30:22,221   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o
2021-07-12T01:30:22,625   Mikado/utilities/overlap.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T01:30:22,626   Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,626    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,627         |                     ^
2021-07-12T01:30:22,627   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,628                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,628                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,628   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:22,628     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:22,628         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,629   Mikado/utilities/overlap.c:2374:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,630    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,630         |                     ^
2021-07-12T01:30:22,630   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,630                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,630                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,630   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T01:30:22,630     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T01:30:22,631         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,632   Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,632    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,632         |                     ^
2021-07-12T01:30:22,632   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,632                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,633                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,633   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:22,633     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:22,633         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,634   Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,634    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,634         |                     ^
2021-07-12T01:30:22,635   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,635                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,635                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,635   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:22,635     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:22,635         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,636   Mikado/utilities/overlap.c:2374:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,637    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,637         |                     ^
2021-07-12T01:30:22,637   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,637                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,637                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,637   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T01:30:22,637     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T01:30:22,637         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,639   Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,639    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,639         |                     ^
2021-07-12T01:30:22,639   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,639                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,639                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,639   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:22,640     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:22,640         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,642   Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,642    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,642         |                         ^
2021-07-12T01:30:22,642   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,642                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,642                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,643   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:22,643     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:22,643         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,644   Mikado/utilities/overlap.c:2390:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,644    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,644         |                         ^
2021-07-12T01:30:22,644   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,645                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,645                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,645   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T01:30:22,645     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T01:30:22,645         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,646   Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,646    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,647         |                         ^
2021-07-12T01:30:22,647   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,647                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,647                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,647   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:22,647     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:22,647         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,649   Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,649    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,649         |                         ^
2021-07-12T01:30:22,649   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,649                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,649                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,649   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:22,649     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:22,650         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,651   Mikado/utilities/overlap.c:2390:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,651    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,651         |                         ^
2021-07-12T01:30:22,651   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,651                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,651                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,652   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T01:30:22,652     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T01:30:22,652         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:22,653   Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:22,653    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:22,653         |                         ^
2021-07-12T01:30:22,653   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:22,654                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:22,654                    from Mikado/utilities/overlap.c:11:
2021-07-12T01:30:22,654   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:22,654     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:22,654         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,167   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o -o build/lib.linux-armv7l-3.9/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so
2021-07-12T01:30:24,284   building 'Mikado.scales.f1' extension
2021-07-12T01:30:24,284   creating build/temp.linux-armv7l-3.9/Mikado/scales
2021-07-12T01:30:24,285   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-3.9/Mikado/scales/f1.o
2021-07-12T01:30:24,667   Mikado/scales/f1.c: In function ‘__Pyx_PyCFunction_FastCall’:
2021-07-12T01:30:24,668   Mikado/scales/f1.c:1821:13: error: too many arguments to function ‘(PyObject * (*)(PyObject *, PyObject * const*, Py_ssize_t))meth’
2021-07-12T01:30:24,668    1821 |     return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
2021-07-12T01:30:24,668         |            ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,675   Mikado/scales/f1.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T01:30:24,675   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,676    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,676         |                     ^
2021-07-12T01:30:24,676   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,676                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,676                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,677   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:24,677     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:24,677         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,677   Mikado/scales/f1.c:2163:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,677    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,677         |                     ^
2021-07-12T01:30:24,678   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,678                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,678                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,678   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T01:30:24,678     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T01:30:24,678         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,678   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,678    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,679         |                     ^
2021-07-12T01:30:24,679   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,679                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,679                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,679   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:24,679     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:24,679         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,679   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,679    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,680         |                     ^
2021-07-12T01:30:24,680   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,680                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,680                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,680   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:24,680     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:24,680         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,680   Mikado/scales/f1.c:2163:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,680    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,681         |                     ^
2021-07-12T01:30:24,681   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,681                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,681                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,681   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T01:30:24,681     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T01:30:24,681         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,681   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,682    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,682         |                     ^
2021-07-12T01:30:24,682   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,682                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,682                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,682   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:24,682     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:24,682         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,683   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,683    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,683         |                         ^
2021-07-12T01:30:24,683   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,683                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,684                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,684   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:24,684     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:24,684         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,684   Mikado/scales/f1.c:2179:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,684    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,684         |                         ^
2021-07-12T01:30:24,684   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,685                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,685                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,685   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T01:30:24,685     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T01:30:24,685         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,685   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,685    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,685         |                         ^
2021-07-12T01:30:24,685   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,686                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,686                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,686   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:24,686     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:24,686         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,686   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,686    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,686         |                         ^
2021-07-12T01:30:24,686   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,687                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,687                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,687   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:24,687     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:24,687         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,687   Mikado/scales/f1.c:2179:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,687    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,687         |                         ^
2021-07-12T01:30:24,687   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,688                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,688                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,688   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T01:30:24,688     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T01:30:24,688         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,688   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T01:30:24,688    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T01:30:24,688         |                         ^
2021-07-12T01:30:24,689   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T01:30:24,689                    from /usr/include/python3.9/Python.h:97,
2021-07-12T01:30:24,689                    from Mikado/scales/f1.c:11:
2021-07-12T01:30:24,689   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T01:30:24,689     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T01:30:24,689         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T01:30:24,738   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-12T01:30:24,847   Building wheel for mikado (setup.py): finished with status 'error'
2021-07-12T01:30:24,848   ERROR: Failed building wheel for mikado
2021-07-12T01:30:24,849   Running setup.py clean for mikado
2021-07-12T01:30:24,849   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vl1nj2a4/mikado_c3f0ca0b4e8844f0a49bfc11b24f137b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vl1nj2a4/mikado_c3f0ca0b4e8844f0a49bfc11b24f137b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-12T01:30:26,563   running clean
2021-07-12T01:30:26,565   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-12T01:30:26,569   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-12T01:30:26,673   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-12T01:30:26,673   'build/scripts-3.9' does not exist -- can't clean it
2021-07-12T01:30:26,764 Failed to build mikado
2021-07-12T01:30:26,765 ERROR: Failed to build one or more wheels
2021-07-12T01:30:26,766 Exception information:
2021-07-12T01:30:26,766 Traceback (most recent call last):
2021-07-12T01:30:26,766   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-12T01:30:26,766     status = self.run(options, args)
2021-07-12T01:30:26,766   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-12T01:30:26,766     return func(self, options, args)
2021-07-12T01:30:26,766   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-12T01:30:26,766     raise CommandError(
2021-07-12T01:30:26,766 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-12T01:30:26,768 Removed build tracker: '/tmp/pip-req-tracker-wa0xooh5'