2021-07-12T03:26:01,892 Created temporary directory: /tmp/pip-ephem-wheel-cache-wod9n5x9
2021-07-12T03:26:01,895 Created temporary directory: /tmp/pip-req-tracker-3gq_9b_o
2021-07-12T03:26:01,896 Initialized build tracking at /tmp/pip-req-tracker-3gq_9b_o
2021-07-12T03:26:01,896 Created build tracker: /tmp/pip-req-tracker-3gq_9b_o
2021-07-12T03:26:01,896 Entered build tracker: /tmp/pip-req-tracker-3gq_9b_o
2021-07-12T03:26:01,897 Created temporary directory: /tmp/pip-wheel-4kniz5w8
2021-07-12T03:26:01,927 1 location(s) to search for versions of mikado:
2021-07-12T03:26:01,927 * https://pypi.org/simple/mikado/
2021-07-12T03:26:01,927 Fetching project page and analyzing links: https://pypi.org/simple/mikado/
2021-07-12T03:26:01,928 Getting page https://pypi.org/simple/mikado/
2021-07-12T03:26:01,929 Found index url https://pypi.org/simple
2021-07-12T03:26:02,029   Found link https://files.pythonhosted.org/packages/e0/9f/c6c5da77e4164c37427bc069d92e83c8269cdf779a43501403ae837a24b3/Mikado-1.0.0b5.post1.tar.gz#sha256=a0e3b57aaec61721c4288cade4cf5386aa069710cc947faaecbae6e3eddb6be6 (from https://pypi.org/simple/mikado/), version: 1.0.0b5.post1
2021-07-12T03:26:02,029   Found link https://files.pythonhosted.org/packages/8f/6c/ee9884cd930db5bfbee812ad1592a32127edbedf01cf28713eda06d5a9b1/Mikado-1.0.0b9.tar.gz#sha256=7d69a3202ee654421d1ef78b9ddabb2c60c2b830454406205c9bf253cc7c5f59 (from https://pypi.org/simple/mikado/), version: 1.0.0b9
2021-07-12T03:26:02,030   Found link https://files.pythonhosted.org/packages/7d/c9/edc669907250923ca1113fa140d1965eb25691f57aaff891642d34aaf217/Mikado-1.0.0b10.tar.gz#sha256=6062fa4c50cc8726f2fb1a37e202478142708b97fcc60d5bb33d3eaa1896d7ab (from https://pypi.org/simple/mikado/), version: 1.0.0b10
2021-07-12T03:26:02,030   Found link https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 (from https://pypi.org/simple/mikado/), version: 1.0
2021-07-12T03:26:02,030   Found link https://files.pythonhosted.org/packages/c2/b9/41d0a6f2ebad5eab5bc183beca8de854b4187266c6674ae6da0d86053f63/Mikado-1.1.tar.gz#sha256=aca1a822799de45494b56a0a2bf66e7eac49eb25cde6642f5da7aeb6515e573e (from https://pypi.org/simple/mikado/), version: 1.1
2021-07-12T03:26:02,030   Found link https://files.pythonhosted.org/packages/40/3d/1158abded48d747b982a77c1badd0d718a174470cdecde82a313f3eb9d4f/Mikado-1.2.tar.gz#sha256=43b2734aee61c437fd6d2c8645e10c1a9f723fa60505e3065bfea1f4a771e44e (from https://pypi.org/simple/mikado/), version: 1.2
2021-07-12T03:26:02,031   Found link https://files.pythonhosted.org/packages/9a/07/5d0790de2c40a36826ac078bf4f7bf62e1fd5848411a784e7eef9fd673c4/Mikado-1.2.1.tar.gz#sha256=3ce7626bfe43a0753ea7a9bcfc1c47ecb59e6616efd2bb0cfe7d373b9bec22c0 (from https://pypi.org/simple/mikado/), version: 1.2.1
2021-07-12T03:26:02,031   Found link https://files.pythonhosted.org/packages/35/a8/73f0dfa3062e3744b27ba7dd4c0bfc6af9b23da38c4c0ce8c7d5b27b0757/Mikado-1.2.2.tar.gz#sha256=5bd12d1563dc85f369f002cfbcc8023b9df71094547fa68589a6339da8688e08 (from https://pypi.org/simple/mikado/), version: 1.2.2
2021-07-12T03:26:02,048   Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f6/7f/d791fd6b5667bf18f4e167803a05fe5c389722ca954dea524259e08121e1/Mikado-1.2.4-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=86046d7c1d80363ae0bdea8adbaa73a499d288c1540ed7b7ef6cf2df8db2b809 (from https://pypi.org/simple/mikado/)
2021-07-12T03:26:02,049   Found link https://files.pythonhosted.org/packages/fc/2d/cc88561deaa5c1b4425855cd821253c68353ed787c7c63dc0f4ea155927e/Mikado-1.2.4.tar.gz#sha256=c0485dba3b7c285599809e058c83f33b5efa9522d20d9f980423410604207f61 (from https://pypi.org/simple/mikado/), version: 1.2.4
2021-07-12T03:26:02,049   Found link https://files.pythonhosted.org/packages/36/12/08d60892041a13f4bd13a486fb510844a8ed99961df828e7509e394904e6/Mikado-2.0rc1.tar.gz#sha256=745ffb74e62d1d1e777f1b6fc84acb8aae2f27290d40301fec0971560e6ba054 (from https://pypi.org/simple/mikado/), version: 2.0rc1
2021-07-12T03:26:02,049   Found link https://files.pythonhosted.org/packages/ba/bf/b9a01f43d67eacafe2deea77708497e8523b9cbc9c08d1da4bade64fdb99/Mikado-2.0rc2.tar.gz#sha256=3cbf2465f9e42dc7a02f8c4aff8625e5421010e3df7a6b3f98d87e82f5534e26 (from https://pypi.org/simple/mikado/), version: 2.0rc2
2021-07-12T03:26:02,050   Found link https://files.pythonhosted.org/packages/86/6d/f8b099f9637b38fd94c3f164f2c996765b579d2eae62cda48a04f108edb1/Mikado-2.0.tar.gz#sha256=f4736adb1014c70758f12904bf7dfe10e153b9497bdb82903d231540a23b8d57 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0
2021-07-12T03:26:02,050   Found link https://files.pythonhosted.org/packages/2e/33/25f4ffb7a3fb20eb2d68ebbb4547dc7c2a26f6c5576a29cca8ba3981a753/Mikado-2.0.1.tar.gz#sha256=d77bf5ca843d8cea35208c52750d014d704d46889633d5ac0f12edba6b5aa131 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.1
2021-07-12T03:26:02,051   Found link https://files.pythonhosted.org/packages/3a/6e/c589e961b797498aa99fe23634edda75166679cd2a381b0354a2d1d7b46f/Mikado-2.0.2.tar.gz#sha256=6c58ccab055f95cdbb0fb0273397ce72186ff7d99fd5ba4bdeb812ea4c18f1a6 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.0.2
2021-07-12T03:26:02,052   Found link https://files.pythonhosted.org/packages/96/ff/815427acc6fb277fe387f6bf7509ad8e374be65f557bbf1f8c7741b21e02/Mikado-2.1.0.tar.gz#sha256=b8ca7cecead9e30430de2c205e65c961b3d704d9351b85d6108577f9ffaba58f (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.0
2021-07-12T03:26:02,052   Found link https://files.pythonhosted.org/packages/13/49/571306c6f821dc029a1cb70472498bd9d25525d126f2084798a774f9e4ce/Mikado-2.1.1.tar.gz#sha256=2107de041d57cac81b1ff52da2b1d029f6c66f7fde78adc66cfbafd57a5215b7 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.1.1
2021-07-12T03:26:02,053   Found link https://files.pythonhosted.org/packages/88/25/93f4d40e98702547602916000e9e8dee101c4e072c29306fcbf9cb6a0797/Mikado-2.2.0.tar.gz#sha256=0892dce8b07c655c63918933aaf4a47292bc5602f6be4b226756106c21c53177 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.0
2021-07-12T03:26:02,053   Found link https://files.pythonhosted.org/packages/f5/4a/ea11bafcbd376966836c1a70d6500fc63839fe529e8d103df8771057750a/Mikado-2.2.1.tar.gz#sha256=2f8d410340e39b0fced63ee523391eae8f18751f3a0910de1cf1a27e1129d210 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.1
2021-07-12T03:26:02,054   Found link https://files.pythonhosted.org/packages/d0/ba/88df54116a8a68de82bd668d6fa2189d4a26045b7e0437cdc50bfccf7002/Mikado-2.2.2.tar.gz#sha256=cb9705ff46b6e67279e27ac1836443782e128619b6ea78676364d11a097a21a9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.2
2021-07-12T03:26:02,055   Found link https://files.pythonhosted.org/packages/28/dd/dec1ae4c7519971dc80a780dde045fce221adffba00535e3ff26de7c29ba/Mikado-2.2.3.tar.gz#sha256=bdbdbdeb56bab4a4d633a0be36aea1aac3c025763a5d6721c98982ac1bd17bf9 (from https://pypi.org/simple/mikado/) (requires-python:>=3.6), version: 2.2.3
2021-07-12T03:26:02,055   Found link https://files.pythonhosted.org/packages/26/c2/021f128fc8733aa031191d140d26c992a0f62dbd0f974913c7245f208bcf/Mikado-2.2.4.tar.gz#sha256=d7eeecb13334dcfee2e8b484e3aa4c31990a7e1f1e0001cabe5a669ef7c9f433 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.4
2021-07-12T03:26:02,056   Found link https://files.pythonhosted.org/packages/30/57/69347e6f46b8845741045f2782a5f59bd1a650167bb6be3ddbd38c8c73c5/Mikado-2.2.5.tar.gz#sha256=ea10960477612dd0a387b2135ed76dbc23e2957b3241c8726559541b88b9ee2e (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.2.5
2021-07-12T03:26:02,056   Found link https://files.pythonhosted.org/packages/09/d8/c98c1549bcbb7f37b93d69625d4228b6b6a29a0676e9dece16e3a6061ff6/Mikado-2.3.0.tar.gz#sha256=c785197f0b6e6f8597100a63181a0d39109bec914e9691a0a972a5244da5cd32 (from https://pypi.org/simple/mikado/) (requires-python:>3.6), version: 2.3.0
2021-07-12T03:26:02,056 Skipping link: not a file: https://pypi.org/simple/mikado/
2021-07-12T03:26:02,060 Given no hashes to check 1 links for project 'mikado': discarding no candidates
2021-07-12T03:26:02,079 Collecting mikado==1.0
2021-07-12T03:26:02,080   Created temporary directory: /tmp/pip-unpack-v1dhopei
2021-07-12T03:26:03,770   Downloading Mikado-1.0.tar.gz (17.2 MB)
2021-07-12T03:26:07,107   Added mikado==1.0 from https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 to build tracker '/tmp/pip-req-tracker-3gq_9b_o'
2021-07-12T03:26:07,108     Running setup.py (path:/tmp/pip-wheel-4kniz5w8/mikado_c2f1df5fe21044bcb591177d045328c3/setup.py) egg_info for package mikado
2021-07-12T03:26:07,109     Created temporary directory: /tmp/pip-pip-egg-info-8gobdg5r
2021-07-12T03:26:07,109     Running command python setup.py egg_info
2021-07-12T03:26:08,815     running egg_info
2021-07-12T03:26:08,817     creating /tmp/pip-pip-egg-info-8gobdg5r/Mikado.egg-info
2021-07-12T03:26:08,818     writing /tmp/pip-pip-egg-info-8gobdg5r/Mikado.egg-info/PKG-INFO
2021-07-12T03:26:08,821     writing dependency_links to /tmp/pip-pip-egg-info-8gobdg5r/Mikado.egg-info/dependency_links.txt
2021-07-12T03:26:08,822     writing entry points to /tmp/pip-pip-egg-info-8gobdg5r/Mikado.egg-info/entry_points.txt
2021-07-12T03:26:08,823     writing requirements to /tmp/pip-pip-egg-info-8gobdg5r/Mikado.egg-info/requires.txt
2021-07-12T03:26:08,824     writing top-level names to /tmp/pip-pip-egg-info-8gobdg5r/Mikado.egg-info/top_level.txt
2021-07-12T03:26:08,826     writing manifest file '/tmp/pip-pip-egg-info-8gobdg5r/Mikado.egg-info/SOURCES.txt'
2021-07-12T03:26:09,013     reading manifest file '/tmp/pip-pip-egg-info-8gobdg5r/Mikado.egg-info/SOURCES.txt'
2021-07-12T03:26:09,014     reading manifest template 'MANIFEST.in'
2021-07-12T03:26:09,859     warning: no previously-included files matching '*' found under directory 'docs/'
2021-07-12T03:26:09,859     adding license file 'AUTHORS'
2021-07-12T03:26:09,886     writing manifest file '/tmp/pip-pip-egg-info-8gobdg5r/Mikado.egg-info/SOURCES.txt'
2021-07-12T03:26:09,986   Source in /tmp/pip-wheel-4kniz5w8/mikado_c2f1df5fe21044bcb591177d045328c3 has version 1.0, which satisfies requirement mikado==1.0 from https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4
2021-07-12T03:26:09,987   Removed mikado==1.0 from https://files.pythonhosted.org/packages/69/15/3551e2856f041aefdd1505656aa8af26b1af04f8e1b4c0448f133724e1f4/Mikado-1.0.tar.gz#sha256=7c4ffaf359f7a0f509f1670c0bd8c9bcd3ed84ade45df15aa55a636021280ac4 from build tracker '/tmp/pip-req-tracker-3gq_9b_o'
2021-07-12T03:26:09,991 Created temporary directory: /tmp/pip-unpack-g3khtfmo
2021-07-12T03:26:09,992 Building wheels for collected packages: mikado
2021-07-12T03:26:09,996   Created temporary directory: /tmp/pip-wheel-e5nj5vur
2021-07-12T03:26:09,996   Building wheel for mikado (setup.py): started
2021-07-12T03:26:09,997   Destination directory: /tmp/pip-wheel-e5nj5vur
2021-07-12T03:26:09,997   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4kniz5w8/mikado_c2f1df5fe21044bcb591177d045328c3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4kniz5w8/mikado_c2f1df5fe21044bcb591177d045328c3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-e5nj5vur
2021-07-12T03:26:11,678   running bdist_wheel
2021-07-12T03:26:11,683   running build
2021-07-12T03:26:11,683   running build_py
2021-07-12T03:26:11,844   creating build/lib.linux-armv7l-3.9
2021-07-12T03:26:11,844   creating build/lib.linux-armv7l-3.9/Mikado
2021-07-12T03:26:11,845   copying Mikado/exceptions.py -> build/lib.linux-armv7l-3.9/Mikado
2021-07-12T03:26:11,847   copying Mikado/__init__.py -> build/lib.linux-armv7l-3.9/Mikado
2021-07-12T03:26:11,850   creating build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T03:26:11,851   copying Mikado/parsers/GFF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T03:26:11,853   copying Mikado/parsers/bed12.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T03:26:11,856   copying Mikado/parsers/GTF.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T03:26:11,858   copying Mikado/parsers/gfannotation.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T03:26:11,861   copying Mikado/parsers/blast_utils.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T03:26:11,863   copying Mikado/parsers/blast_xml.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T03:26:11,866   copying Mikado/parsers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/parsers
2021-07-12T03:26:11,869   creating build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T03:26:11,870   copying Mikado/configuration/daijin_configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T03:26:11,872   copying Mikado/configuration/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T03:26:11,874   copying Mikado/configuration/configurator.py -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T03:26:11,878   creating build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T03:26:11,879   copying Mikado/serializers/orf.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T03:26:11,882   copying Mikado/serializers/external.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T03:26:11,884   copying Mikado/serializers/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T03:26:11,886   copying Mikado/serializers/junction.py -> build/lib.linux-armv7l-3.9/Mikado/serializers
2021-07-12T03:26:11,890   creating build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T03:26:11,891   copying Mikado/picking/loci_processer.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T03:26:11,894   copying Mikado/picking/picker.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T03:26:11,898   copying Mikado/picking/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/picking
2021-07-12T03:26:11,901   creating build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:11,902   copying Mikado/scales/assigner.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:11,906   copying Mikado/scales/accountant.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:11,909   copying Mikado/scales/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:11,912   copying Mikado/scales/compare.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:11,915   copying Mikado/scales/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:11,917   copying Mikado/scales/resultstorer.py -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:11,919   creating build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T03:26:11,920   copying Mikado/daijin/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T03:26:11,925   creating build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,926   copying Mikado/tests/test_external_scores.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,928   copying Mikado/tests/test_modifications.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,930   copying Mikado/tests/test_system_calls.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,934   copying Mikado/tests/locus_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,938   copying Mikado/tests/test_gene.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,940   copying Mikado/tests/test_clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,942   copying Mikado/tests/transcript_tester_single.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,946   copying Mikado/tests/test_blast_related.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,949   copying Mikado/tests/utilities_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,951   copying Mikado/tests/test_invalid_orfs.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,954   copying Mikado/tests/orf_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,958   copying Mikado/tests/test_json.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,960   copying Mikado/tests/test_transcript_checker.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,963   copying Mikado/tests/test_metrics.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,966   copying Mikado/tests/transcript_tester_negative.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,969   copying Mikado/tests/test_splitting.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,972   copying Mikado/tests/test_db_utils.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,974   copying Mikado/tests/assigner_tester.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,978   copying Mikado/tests/transcript_tester_positive.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,982   copying Mikado/tests/test_transcript_methods.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,985   copying Mikado/tests/intervaltree_tests.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,988   copying Mikado/tests/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,990   copying Mikado/tests/test_serialisation.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,993   copying Mikado/tests/parser_testing.py -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:11,996   creating build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:11,997   copying Mikado/utilities/dbutils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:11,999   copying Mikado/utilities/log_utils.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:12,001   copying Mikado/utilities/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:12,005   creating build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T03:26:12,006   copying Mikado/subprograms/configure.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T03:26:12,009   copying Mikado/subprograms/__main__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T03:26:12,011   copying Mikado/subprograms/pick.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T03:26:12,014   copying Mikado/subprograms/serialise.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T03:26:12,017   copying Mikado/subprograms/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T03:26:12,019   copying Mikado/subprograms/compare.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T03:26:12,022   copying Mikado/subprograms/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms
2021-07-12T03:26:12,025   creating build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,026   copying Mikado/loci/monosublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,028   copying Mikado/loci/abstractlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,034   copying Mikado/loci/superlocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,038   copying Mikado/loci/monosublocusholder.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,040   copying Mikado/loci/sublocus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,043   copying Mikado/loci/reference_gene.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,045   copying Mikado/loci/excluded.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,047   copying Mikado/loci/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,049   copying Mikado/loci/locus.py -> build/lib.linux-armv7l-3.9/Mikado/loci
2021-07-12T03:26:12,053   creating build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T03:26:12,054   copying Mikado/transcripts/transcriptchecker.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T03:26:12,056   copying Mikado/transcripts/transcript.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T03:26:12,061   copying Mikado/transcripts/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T03:26:12,063   copying Mikado/transcripts/clique_methods.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts
2021-07-12T03:26:12,065   creating build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T03:26:12,066   copying Mikado/preparation/checking.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T03:26:12,068   copying Mikado/preparation/prepare.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T03:26:12,071   copying Mikado/preparation/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T03:26:12,073   copying Mikado/preparation/annotation_parser.py -> build/lib.linux-armv7l-3.9/Mikado/preparation
2021-07-12T03:26:12,076   creating build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T03:26:12,077   copying Mikado/serializers/blast_serializer/xml_serialiser.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T03:26:12,080   copying Mikado/serializers/blast_serializer/target.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T03:26:12,082   copying Mikado/serializers/blast_serializer/query.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T03:26:12,084   copying Mikado/serializers/blast_serializer/utils.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T03:26:12,086   copying Mikado/serializers/blast_serializer/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T03:26:12,088   copying Mikado/serializers/blast_serializer/hsp.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T03:26:12,090   copying Mikado/serializers/blast_serializer/hit.py -> build/lib.linux-armv7l-3.9/Mikado/serializers/blast_serializer
2021-07-12T03:26:12,094   creating build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,094   copying Mikado/subprograms/util/metrics.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,097   copying Mikado/subprograms/util/trim.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,100   copying Mikado/subprograms/util/grep.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,102   copying Mikado/subprograms/util/convert.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,104   copying Mikado/subprograms/util/class_codes.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,106   copying Mikado/subprograms/util/awk_gtf.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,107   copying Mikado/subprograms/util/stats.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,110   copying Mikado/subprograms/util/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,112   copying Mikado/subprograms/util/merge_blast.py -> build/lib.linux-armv7l-3.9/Mikado/subprograms/util
2021-07-12T03:26:12,115   creating build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T03:26:12,116   copying Mikado/transcripts/transcript_methods/printing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T03:26:12,119   copying Mikado/transcripts/transcript_methods/retrieval.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T03:26:12,122   copying Mikado/transcripts/transcript_methods/finalizing.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T03:26:12,125   copying Mikado/transcripts/transcript_methods/splitting.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T03:26:12,128   copying Mikado/transcripts/transcript_methods/__init__.py -> build/lib.linux-armv7l-3.9/Mikado/transcripts/transcript_methods
2021-07-12T03:26:12,130   running egg_info
2021-07-12T03:26:12,144   writing Mikado.egg-info/PKG-INFO
2021-07-12T03:26:12,145   writing dependency_links to Mikado.egg-info/dependency_links.txt
2021-07-12T03:26:12,147   writing entry points to Mikado.egg-info/entry_points.txt
2021-07-12T03:26:12,148   writing requirements to Mikado.egg-info/requires.txt
2021-07-12T03:26:12,150   writing top-level names to Mikado.egg-info/top_level.txt
2021-07-12T03:26:12,167   reading manifest file 'Mikado.egg-info/SOURCES.txt'
2021-07-12T03:26:12,220   reading manifest template 'MANIFEST.in'
2021-07-12T03:26:13,049   warning: no previously-included files matching '*' found under directory 'docs/'
2021-07-12T03:26:13,050   adding license file 'AUTHORS'
2021-07-12T03:26:13,089   writing manifest file 'Mikado.egg-info/SOURCES.txt'
2021-07-12T03:26:13,127   copying Mikado/configuration/configuration_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T03:26:13,130   copying Mikado/configuration/daijin_schema.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T03:26:13,133   copying Mikado/configuration/requirements_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T03:26:13,135   copying Mikado/configuration/scoring_blueprint.json -> build/lib.linux-armv7l-3.9/Mikado/configuration
2021-07-12T03:26:13,137   creating build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,138   copying Mikado/configuration/scoring_files/athaliana_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,140   copying Mikado/configuration/scoring_files/celegans_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,143   copying Mikado/configuration/scoring_files/dmelanogaster_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,145   copying Mikado/configuration/scoring_files/hsapiens_scoring.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,147   copying Mikado/configuration/scoring_files/human.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,150   copying Mikado/configuration/scoring_files/insects.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,152   copying Mikado/configuration/scoring_files/plants.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,155   copying Mikado/configuration/scoring_files/spombe.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,157   copying Mikado/configuration/scoring_files/worm.yaml -> build/lib.linux-armv7l-3.9/Mikado/configuration/scoring_files
2021-07-12T03:26:13,160   copying Mikado/scales/contrast.c -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:13,173   copying Mikado/scales/contrast.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:13,175   copying Mikado/scales/contrast.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:13,178   copying Mikado/scales/f1.c -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:13,184   copying Mikado/scales/f1.pxd -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:13,186   copying Mikado/scales/f1.pyx -> build/lib.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:13,188   copying Mikado/daijin/example_config.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T03:26:13,191   copying Mikado/daijin/hpc.json -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T03:26:13,193   copying Mikado/daijin/hpc.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T03:26:13,195   copying Mikado/daijin/local.yaml -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T03:26:13,198   copying Mikado/daijin/mikado.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T03:26:13,201   copying Mikado/daijin/tr.snakefile -> build/lib.linux-armv7l-3.9/Mikado/daijin
2021-07-12T03:26:13,204   copying Mikado/tests/chr5.fas.gz -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,380   copying Mikado/tests/configuration.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,383   copying Mikado/tests/cufflinks.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,386   copying Mikado/tests/genome.fai -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,388   copying Mikado/tests/junctions.bed -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,391   copying Mikado/tests/mikado.blast.asn.gz -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,398   copying Mikado/tests/mikado.blast.xml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,428   copying Mikado/tests/mikado.db -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,466   copying Mikado/tests/mikado_prepared.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,470   copying Mikado/tests/plants.suspicious_requirement.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,472   copying Mikado/tests/plants.yaml~ -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,474   copying Mikado/tests/scoring_only_cds.yaml -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,476   copying Mikado/tests/trinity.cDNA_match.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,479   copying Mikado/tests/trinity.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,482   copying Mikado/tests/trinity.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,485   copying Mikado/tests/trinity.match_matchpart.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,488   copying Mikado/tests/trinity_stats.txt -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,490   copying Mikado/tests/uniprot_sprot_plants.fasta.gz -> build/lib.linux-armv7l-3.9/Mikado/tests
2021-07-12T03:26:13,627   creating build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,628   copying Mikado/tests/__pycache__/__init__.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,630   copying Mikado/tests/__pycache__/__init__.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,632   copying Mikado/tests/__pycache__/__init__.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,634   copying Mikado/tests/__pycache__/assigner_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,638   copying Mikado/tests/__pycache__/assigner_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,641   copying Mikado/tests/__pycache__/assigner_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,644   copying Mikado/tests/__pycache__/intervaltree_tests.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,648   copying Mikado/tests/__pycache__/intervaltree_tests.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,651   copying Mikado/tests/__pycache__/intervaltree_tests.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,653   copying Mikado/tests/__pycache__/locus_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,658   copying Mikado/tests/__pycache__/locus_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,662   copying Mikado/tests/__pycache__/locus_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,667   copying Mikado/tests/__pycache__/orf_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,671   copying Mikado/tests/__pycache__/orf_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,674   copying Mikado/tests/__pycache__/orf_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,677   copying Mikado/tests/__pycache__/parser_testing.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,679   copying Mikado/tests/__pycache__/parser_testing.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,682   copying Mikado/tests/__pycache__/parser_testing.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,684   copying Mikado/tests/__pycache__/phases_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,686   copying Mikado/tests/__pycache__/phases_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,689   copying Mikado/tests/__pycache__/system_checks.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,692   copying Mikado/tests/__pycache__/test_blast_related.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,694   copying Mikado/tests/__pycache__/test_blast_related.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,697   copying Mikado/tests/__pycache__/test_blast_related.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,699   copying Mikado/tests/__pycache__/test_clique_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,701   copying Mikado/tests/__pycache__/test_clique_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,704   copying Mikado/tests/__pycache__/test_clique_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,706   copying Mikado/tests/__pycache__/test_db_utils.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,709   copying Mikado/tests/__pycache__/test_db_utils.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,712   copying Mikado/tests/__pycache__/test_db_utils.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,715   copying Mikado/tests/__pycache__/test_external_scores.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,717   copying Mikado/tests/__pycache__/test_external_scores.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,719   copying Mikado/tests/__pycache__/test_external_scores.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,721   copying Mikado/tests/__pycache__/test_gene.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,723   copying Mikado/tests/__pycache__/test_gene.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,725   copying Mikado/tests/__pycache__/test_gene.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,728   copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,730   copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,733   copying Mikado/tests/__pycache__/test_invalid_orfs.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,735   copying Mikado/tests/__pycache__/test_json.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,738   copying Mikado/tests/__pycache__/test_json.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,740   copying Mikado/tests/__pycache__/test_json.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,742   copying Mikado/tests/__pycache__/test_metrics.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,745   copying Mikado/tests/__pycache__/test_metrics.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,748   copying Mikado/tests/__pycache__/test_metrics.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,750   copying Mikado/tests/__pycache__/test_modifications.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,753   copying Mikado/tests/__pycache__/test_modifications.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,755   copying Mikado/tests/__pycache__/test_modifications.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,758   copying Mikado/tests/__pycache__/test_serialisation.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,760   copying Mikado/tests/__pycache__/test_serialisation.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,763   copying Mikado/tests/__pycache__/test_serialisation.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,766   copying Mikado/tests/__pycache__/test_splitting.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,769   copying Mikado/tests/__pycache__/test_splitting.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,772   copying Mikado/tests/__pycache__/test_splitting.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,775   copying Mikado/tests/__pycache__/test_system_calls.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,779   copying Mikado/tests/__pycache__/test_system_calls.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,782   copying Mikado/tests/__pycache__/test_system_calls.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,786   copying Mikado/tests/__pycache__/test_transcript_checker.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,789   copying Mikado/tests/__pycache__/test_transcript_checker.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,792   copying Mikado/tests/__pycache__/test_transcript_checker.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,795   copying Mikado/tests/__pycache__/test_transcript_methods.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,798   copying Mikado/tests/__pycache__/test_transcript_methods.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,801   copying Mikado/tests/__pycache__/test_transcript_methods.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,804   copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,807   copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,810   copying Mikado/tests/__pycache__/transcript_tester_negative.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,814   copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,818   copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,822   copying Mikado/tests/__pycache__/transcript_tester_positive.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,826   copying Mikado/tests/__pycache__/transcript_tester_single.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,830   copying Mikado/tests/__pycache__/transcript_tester_single.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,833   copying Mikado/tests/__pycache__/transcript_tester_single.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,837   copying Mikado/tests/__pycache__/utilities_tester.cpython-34.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,840   copying Mikado/tests/__pycache__/utilities_tester.cpython-35.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,842   copying Mikado/tests/__pycache__/utilities_tester.cpython-36.pyc -> build/lib.linux-armv7l-3.9/Mikado/tests/__pycache__
2021-07-12T03:26:13,845   creating build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T03:26:13,846   copying Mikado/tests/fusion_test/fusion_test.log -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T03:26:13,848   copying Mikado/tests/fusion_test/fusion_test_pred.gtf -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T03:26:13,851   copying Mikado/tests/fusion_test/fusion_test_ref.gff3 -> build/lib.linux-armv7l-3.9/Mikado/tests/fusion_test
2021-07-12T03:26:13,854   copying Mikado/utilities/intervaltree.c -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:13,871   copying Mikado/utilities/intervaltree.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:13,874   copying Mikado/utilities/overlap.c -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:13,880   copying Mikado/utilities/overlap.pxd -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:13,882   copying Mikado/utilities/overlap.pyx -> build/lib.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:13,896   running build_ext
2021-07-12T03:26:13,900   building 'Mikado.utilities.overlap' extension
2021-07-12T03:26:13,900   creating build/temp.linux-armv7l-3.9
2021-07-12T03:26:13,901   creating build/temp.linux-armv7l-3.9/Mikado
2021-07-12T03:26:13,901   creating build/temp.linux-armv7l-3.9/Mikado/utilities
2021-07-12T03:26:13,902   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/utilities/overlap.c -o build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o
2021-07-12T03:26:14,280   Mikado/utilities/overlap.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T03:26:14,281   Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,281    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,282         |                     ^
2021-07-12T03:26:14,282   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,282                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,282                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,282   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:14,282     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:14,282         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,283   Mikado/utilities/overlap.c:2374:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,283    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,283         |                     ^
2021-07-12T03:26:14,283   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,283                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,284                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,284   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T03:26:14,284     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T03:26:14,284         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,284   Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,284    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,284         |                     ^
2021-07-12T03:26:14,284   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,285                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,285                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,285   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:14,285     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:14,285         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,285   Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,285    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,285         |                     ^
2021-07-12T03:26:14,286   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,286                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,286                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,286   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:14,286     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:14,286         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,286   Mikado/utilities/overlap.c:2374:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,286    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,286         |                     ^
2021-07-12T03:26:14,287   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,287                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,287                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,287   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T03:26:14,287     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T03:26:14,287         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,287   Mikado/utilities/overlap.c:2374:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,288    2374 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,288         |                     ^
2021-07-12T03:26:14,288   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,288                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,288                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,288   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:14,288     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:14,288         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,289   Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,289    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,289         |                         ^
2021-07-12T03:26:14,290   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,290                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,290                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,290   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:14,290     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:14,290         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,290   Mikado/utilities/overlap.c:2390:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,290    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,290         |                         ^
2021-07-12T03:26:14,291   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,291                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,291                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,291   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T03:26:14,291     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T03:26:14,291         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,291   Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,291    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,292         |                         ^
2021-07-12T03:26:14,292   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,292                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,292                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,292   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:14,292     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:14,292         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,292   Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,293    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,293         |                         ^
2021-07-12T03:26:14,293   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,293                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,293                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,293   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:14,293     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:14,293         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,293   Mikado/utilities/overlap.c:2390:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,294    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,294         |                         ^
2021-07-12T03:26:14,294   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,294                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,294                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,294   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T03:26:14,294     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T03:26:14,294         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:14,295   Mikado/utilities/overlap.c:2390:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:14,295    2390 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:14,295         |                         ^
2021-07-12T03:26:14,295   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:14,295                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:14,295                    from Mikado/utilities/overlap.c:11:
2021-07-12T03:26:14,295   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:14,295     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:14,295         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:15,813   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/Mikado/utilities/overlap.o -o build/lib.linux-armv7l-3.9/Mikado/utilities/overlap.cpython-39-arm-linux-gnueabihf.so
2021-07-12T03:26:15,927   building 'Mikado.scales.f1' extension
2021-07-12T03:26:15,928   creating build/temp.linux-armv7l-3.9/Mikado/scales
2021-07-12T03:26:15,928   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c Mikado/scales/f1.c -o build/temp.linux-armv7l-3.9/Mikado/scales/f1.o
2021-07-12T03:26:16,306   Mikado/scales/f1.c: In function ‘__Pyx_PyCFunction_FastCall’:
2021-07-12T03:26:16,306   Mikado/scales/f1.c:1821:13: error: too many arguments to function ‘(PyObject * (*)(PyObject *, PyObject * const*, Py_ssize_t))meth’
2021-07-12T03:26:16,307    1821 |     return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
2021-07-12T03:26:16,307         |            ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,314   Mikado/scales/f1.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T03:26:16,314   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,315    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,315         |                     ^
2021-07-12T03:26:16,315   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,315                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,315                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,315   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:16,315     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:16,316         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,316   Mikado/scales/f1.c:2163:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,316    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,316         |                     ^
2021-07-12T03:26:16,316   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,316                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,317                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,317   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T03:26:16,317     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T03:26:16,317         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,317   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,317    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,317         |                     ^
2021-07-12T03:26:16,317   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,318                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,318                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,318   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:16,318     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:16,318         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,318   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,318    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,318         |                     ^
2021-07-12T03:26:16,318   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,319                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,319                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,319   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:16,319     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:16,319         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,319   Mikado/scales/f1.c:2163:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,319    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,319         |                     ^
2021-07-12T03:26:16,319   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,320                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,320                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,320   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T03:26:16,320     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T03:26:16,320         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,320   Mikado/scales/f1.c:2163:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,320    2163 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,320         |                     ^
2021-07-12T03:26:16,321   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,321                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,321                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,321   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:16,321     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:16,321         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,322   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,322    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,322         |                         ^
2021-07-12T03:26:16,322   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,322                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,322                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,322   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:16,323     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:16,323         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,323   Mikado/scales/f1.c:2179:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,323    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,323         |                         ^
2021-07-12T03:26:16,323   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,323                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,323                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,323   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T03:26:16,324     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T03:26:16,324         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,324   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,324    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,324         |                         ^
2021-07-12T03:26:16,324   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,324                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,324                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,325   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:16,325     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:16,325         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,325   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,325    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,325         |                         ^
2021-07-12T03:26:16,325   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,325                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,325                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,326   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:16,326     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:16,326         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,326   Mikado/scales/f1.c:2179:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,326    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,326         |                         ^
2021-07-12T03:26:16,326   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,326                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,326                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,326   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T03:26:16,327     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T03:26:16,327         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,327   Mikado/scales/f1.c:2179:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T03:26:16,327    2179 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T03:26:16,327         |                         ^
2021-07-12T03:26:16,327   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T03:26:16,327                    from /usr/include/python3.9/Python.h:97,
2021-07-12T03:26:16,328                    from Mikado/scales/f1.c:11:
2021-07-12T03:26:16,328   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T03:26:16,328     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T03:26:16,328         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T03:26:16,379   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2021-07-12T03:26:16,488   Building wheel for mikado (setup.py): finished with status 'error'
2021-07-12T03:26:16,489   ERROR: Failed building wheel for mikado
2021-07-12T03:26:16,489   Running setup.py clean for mikado
2021-07-12T03:26:16,490   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-4kniz5w8/mikado_c2f1df5fe21044bcb591177d045328c3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-4kniz5w8/mikado_c2f1df5fe21044bcb591177d045328c3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all
2021-07-12T03:26:18,160   running clean
2021-07-12T03:26:18,163   removing 'build/temp.linux-armv7l-3.9' (and everything under it)
2021-07-12T03:26:18,167   removing 'build/lib.linux-armv7l-3.9' (and everything under it)
2021-07-12T03:26:18,271   'build/bdist.linux-armv7l' does not exist -- can't clean it
2021-07-12T03:26:18,271   'build/scripts-3.9' does not exist -- can't clean it
2021-07-12T03:26:18,360 Failed to build mikado
2021-07-12T03:26:18,361 ERROR: Failed to build one or more wheels
2021-07-12T03:26:18,361 Exception information:
2021-07-12T03:26:18,361 Traceback (most recent call last):
2021-07-12T03:26:18,361   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main
2021-07-12T03:26:18,361     status = self.run(options, args)
2021-07-12T03:26:18,361   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper
2021-07-12T03:26:18,361     return func(self, options, args)
2021-07-12T03:26:18,361   File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run
2021-07-12T03:26:18,361     raise CommandError(
2021-07-12T03:26:18,361 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2021-07-12T03:26:18,364 Removed build tracker: '/tmp/pip-req-tracker-3gq_9b_o'