2021-07-12T06:49:37,379 Created temporary directory: /tmp/pip-ephem-wheel-cache-k4qgpjm0 2021-07-12T06:49:37,382 Created temporary directory: /tmp/pip-req-tracker-5_fkodhb 2021-07-12T06:49:37,382 Initialized build tracking at /tmp/pip-req-tracker-5_fkodhb 2021-07-12T06:49:37,382 Created build tracker: /tmp/pip-req-tracker-5_fkodhb 2021-07-12T06:49:37,382 Entered build tracker: /tmp/pip-req-tracker-5_fkodhb 2021-07-12T06:49:37,383 Created temporary directory: /tmp/pip-wheel-p2as7ymr 2021-07-12T06:49:37,413 1 location(s) to search for versions of biom-format: 2021-07-12T06:49:37,413 * https://pypi.org/simple/biom-format/ 2021-07-12T06:49:37,414 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2021-07-12T06:49:37,414 Getting page https://pypi.org/simple/biom-format/ 2021-07-12T06:49:37,416 Found index url https://pypi.org/simple 2021-07-12T06:49:37,602 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz#sha256=4ffddeb779a2f9d2859c01f2502ea1a40ee88cedc03306871f71eb60a2d55d9c (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2021-07-12T06:49:37,602 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz#sha256=f8cfb8e6591480f18acd5cea60e234885a885502941d82457c7bde323f4f4c5e (from https://pypi.org/simple/biom-format/), version: 1.3.0 2021-07-12T06:49:37,603 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz#sha256=03e750728dc2625997aa62043adaf03643801ef34c1764213303e926766f4cef (from https://pypi.org/simple/biom-format/), version: 1.3.1 2021-07-12T06:49:37,603 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz#sha256=8267b32aa24e7115cbe354904f6ff2023c73a308f8c897d96cef28e4f8850f9c (from https://pypi.org/simple/biom-format/), version: 2.0.0 2021-07-12T06:49:37,603 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz#sha256=e2e8a843e7a85b6f48381e8b24b2e0809b111507efe7e1b86e8a63cb1b60a97c (from https://pypi.org/simple/biom-format/), version: 2.0.1 2021-07-12T06:49:37,604 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz#sha256=dac3be021598783abeeec92fc4a5abb48d62908a3f68b3ef32e964c38a544bdd (from https://pypi.org/simple/biom-format/), version: 2.1 2021-07-12T06:49:37,604 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz#sha256=9ff3690e60659515b10bcf0a748ee623a2448c332a811050e63ac9ff8e9e6035 (from https://pypi.org/simple/biom-format/), version: 2.1.1 2021-07-12T06:49:37,604 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz#sha256=a8cd3087036202baf7a8f758f585f80c3fbcd161bf76b0a96c5f734115a4ef99 (from https://pypi.org/simple/biom-format/), version: 2.1.2 2021-07-12T06:49:37,604 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz#sha256=ce2634f0c8f19561daae2bf4729424ec5222092f41257e1aafe9b7afc8d30909 (from https://pypi.org/simple/biom-format/), version: 2.1.3 2021-07-12T06:49:37,605 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz#sha256=36b465394b8765df24b9f0c0707a2ebbf367f88f1ed47d794f011930a1d4ba15 (from https://pypi.org/simple/biom-format/), version: 2.1.4 2021-07-12T06:49:37,605 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz#sha256=aac0a0c8dfb06cb40e31c52dcfecf43ac7395c8032f2390e49936fce6574e374 (from https://pypi.org/simple/biom-format/), version: 2.1.5 2021-07-12T06:49:37,605 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d (from https://pypi.org/simple/biom-format/), version: 2.1.6 2021-07-12T06:49:37,623 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl#sha256=83babb4b52c61008b0e09064289e9e022d66ab7b18a76176e81996bd6f14e8e2 (from https://pypi.org/simple/biom-format/) 2021-07-12T06:49:37,623 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz#sha256=b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4 (from https://pypi.org/simple/biom-format/), version: 2.1.7 2021-07-12T06:49:37,624 Skipping link: none of the wheel's tags (cp36-cp36m-macosx_10_7_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl#sha256=3f0dc659893037280529f2b9d444cdc4439e2a280e6acfeb3ebc4080aedf63ef (from https://pypi.org/simple/biom-format/) 2021-07-12T06:49:37,624 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz#sha256=3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2021-07-12T06:49:37,624 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz#sha256=18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491 (from https://pypi.org/simple/biom-format/), version: 2.1.9 2021-07-12T06:49:37,625 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz#sha256=f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488 (from https://pypi.org/simple/biom-format/), version: 2.1.10 2021-07-12T06:49:37,625 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2021-07-12T06:49:37,628 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2021-07-12T06:49:37,647 Collecting biom-format==2.1.6 2021-07-12T06:49:37,649 Created temporary directory: /tmp/pip-unpack-0b81k4ny 2021-07-12T06:49:38,249 Downloading biom-format-2.1.6.tar.gz (860 kB) 2021-07-12T06:49:39,587 Added biom-format==2.1.6 from https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d to build tracker '/tmp/pip-req-tracker-5_fkodhb' 2021-07-12T06:49:39,588 Running setup.py (path:/tmp/pip-wheel-p2as7ymr/biom-format_c5c8226f622c447da689b2dd4b8dbde3/setup.py) egg_info for package biom-format 2021-07-12T06:49:39,589 Created temporary directory: /tmp/pip-pip-egg-info-3gqqb5ng 2021-07-12T06:49:39,589 Running command python setup.py egg_info 2021-07-12T06:49:40,939 running egg_info 2021-07-12T06:49:40,941 creating /tmp/pip-pip-egg-info-3gqqb5ng/biom_format.egg-info 2021-07-12T06:49:40,942 writing /tmp/pip-pip-egg-info-3gqqb5ng/biom_format.egg-info/PKG-INFO 2021-07-12T06:49:40,944 writing dependency_links to /tmp/pip-pip-egg-info-3gqqb5ng/biom_format.egg-info/dependency_links.txt 2021-07-12T06:49:40,946 writing entry points to /tmp/pip-pip-egg-info-3gqqb5ng/biom_format.egg-info/entry_points.txt 2021-07-12T06:49:40,947 writing requirements to /tmp/pip-pip-egg-info-3gqqb5ng/biom_format.egg-info/requires.txt 2021-07-12T06:49:40,948 writing top-level names to /tmp/pip-pip-egg-info-3gqqb5ng/biom_format.egg-info/top_level.txt 2021-07-12T06:49:40,949 writing manifest file '/tmp/pip-pip-egg-info-3gqqb5ng/biom_format.egg-info/SOURCES.txt' 2021-07-12T06:49:41,298 reading manifest file '/tmp/pip-pip-egg-info-3gqqb5ng/biom_format.egg-info/SOURCES.txt' 2021-07-12T06:49:41,299 reading manifest template 'MANIFEST.in' 2021-07-12T06:49:41,303 warning: no directories found matching 'support_files' 2021-07-12T06:49:41,346 no previously-included directories found matching 'docs/_build' 2021-07-12T06:49:41,349 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-12T06:49:41,350 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-12T06:49:41,352 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-12T06:49:41,354 warning: no previously-included files matching '*.so' found anywhere in distribution 2021-07-12T06:49:41,355 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2021-07-12T06:49:41,355 adding license file 'COPYING.txt' 2021-07-12T06:49:41,377 writing manifest file '/tmp/pip-pip-egg-info-3gqqb5ng/biom_format.egg-info/SOURCES.txt' 2021-07-12T06:49:41,481 Source in /tmp/pip-wheel-p2as7ymr/biom-format_c5c8226f622c447da689b2dd4b8dbde3 has version 2.1.6, which satisfies requirement biom-format==2.1.6 from https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d 2021-07-12T06:49:41,483 Removed biom-format==2.1.6 from https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz#sha256=8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d from build tracker '/tmp/pip-req-tracker-5_fkodhb' 2021-07-12T06:49:41,487 Created temporary directory: /tmp/pip-unpack-qcq4qi3d 2021-07-12T06:49:41,488 Building wheels for collected packages: biom-format 2021-07-12T06:49:41,492 Created temporary directory: /tmp/pip-wheel-xsvhzl50 2021-07-12T06:49:41,492 Building wheel for biom-format (setup.py): started 2021-07-12T06:49:41,493 Destination directory: /tmp/pip-wheel-xsvhzl50 2021-07-12T06:49:41,493 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-p2as7ymr/biom-format_c5c8226f622c447da689b2dd4b8dbde3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-p2as7ymr/biom-format_c5c8226f622c447da689b2dd4b8dbde3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-xsvhzl50 2021-07-12T06:49:42,817 running bdist_wheel 2021-07-12T06:49:43,011 running build 2021-07-12T06:49:43,012 running build_py 2021-07-12T06:49:43,146 creating build 2021-07-12T06:49:43,147 creating build/lib.linux-armv7l-3.9 2021-07-12T06:49:43,147 creating build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,149 copying biom/parse.py -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,152 copying biom/table.py -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,158 copying biom/__init__.py -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,160 copying biom/exception.py -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,162 copying biom/err.py -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,165 copying biom/util.py -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,169 creating build/lib.linux-armv7l-3.9/tests 2021-07-12T06:49:43,170 copying tests/test_err.py -> build/lib.linux-armv7l-3.9/tests 2021-07-12T06:49:43,173 copying tests/test_util.py -> build/lib.linux-armv7l-3.9/tests 2021-07-12T06:49:43,176 copying tests/__init__.py -> build/lib.linux-armv7l-3.9/tests 2021-07-12T06:49:43,178 copying tests/test_parse.py -> build/lib.linux-armv7l-3.9/tests 2021-07-12T06:49:43,182 copying tests/test_table.py -> build/lib.linux-armv7l-3.9/tests 2021-07-12T06:49:43,189 creating build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,191 copying biom/cli/table_subsetter.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,194 copying biom/cli/table_validator.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,197 copying biom/cli/__init__.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,199 copying biom/cli/table_summarizer.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,201 copying biom/cli/metadata_adder.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,204 copying biom/cli/installation_informer.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,206 copying biom/cli/table_head.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,208 copying biom/cli/uc_processor.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,211 copying biom/cli/table_converter.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,214 copying biom/cli/util.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,216 copying biom/cli/table_normalizer.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,218 copying biom/cli/table_ids.py -> build/lib.linux-armv7l-3.9/biom/cli 2021-07-12T06:49:43,221 creating build/lib.linux-armv7l-3.9/tests/test_data 2021-07-12T06:49:43,222 copying tests/test_data/__init__.py -> build/lib.linux-armv7l-3.9/tests/test_data 2021-07-12T06:49:43,225 creating build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,226 copying tests/test_cli/__init__.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,229 copying tests/test_cli/test_subset_table.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,231 copying tests/test_cli/test_uc_processor.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,234 copying tests/test_cli/test_summarize_table.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,236 copying tests/test_cli/test_add_metadata.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,239 copying tests/test_cli/test_table_converter.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,242 copying tests/test_cli/test_table_normalizer.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,244 copying tests/test_cli/test_validate_table.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,247 copying tests/test_cli/test_show_install_info.py -> build/lib.linux-armv7l-3.9/tests/test_cli 2021-07-12T06:49:43,248 running egg_info 2021-07-12T06:49:43,286 writing biom_format.egg-info/PKG-INFO 2021-07-12T06:49:43,288 writing dependency_links to biom_format.egg-info/dependency_links.txt 2021-07-12T06:49:43,290 writing entry points to biom_format.egg-info/entry_points.txt 2021-07-12T06:49:43,291 writing requirements to biom_format.egg-info/requires.txt 2021-07-12T06:49:43,293 writing top-level names to biom_format.egg-info/top_level.txt 2021-07-12T06:49:43,303 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-12T06:49:43,318 reading manifest template 'MANIFEST.in' 2021-07-12T06:49:43,321 warning: no directories found matching 'support_files' 2021-07-12T06:49:43,349 no previously-included directories found matching 'docs/_build' 2021-07-12T06:49:43,353 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2021-07-12T06:49:43,356 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2021-07-12T06:49:43,358 warning: no previously-included files matching '.git' found anywhere in distribution 2021-07-12T06:49:43,362 warning: no previously-included files matching '*.so' found anywhere in distribution 2021-07-12T06:49:43,364 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2021-07-12T06:49:43,364 adding license file 'COPYING.txt' 2021-07-12T06:49:43,394 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2021-07-12T06:49:43,420 copying biom/_filter.c -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,432 copying biom/_filter.pyx -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,435 copying biom/_subsample.c -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,446 copying biom/_subsample.pyx -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,449 copying biom/_transform.c -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,460 copying biom/_transform.pyx -> build/lib.linux-armv7l-3.9/biom 2021-07-12T06:49:43,463 creating build/lib.linux-armv7l-3.9/biom/assets 2021-07-12T06:49:43,464 copying biom/assets/exercise_api.py -> build/lib.linux-armv7l-3.9/biom/assets 2021-07-12T06:49:43,467 copying biom/assets/exercise_cli.sh -> build/lib.linux-armv7l-3.9/biom/assets 2021-07-12T06:49:43,473 running build_ext 2021-07-12T06:49:43,478 building 'biom._filter' extension 2021-07-12T06:49:43,479 creating build/temp.linux-armv7l-3.9 2021-07-12T06:49:43,479 creating build/temp.linux-armv7l-3.9/biom 2021-07-12T06:49:43,480 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-3.9/biom/_filter.o 2021-07-12T06:49:43,856 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T06:49:43,857 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T06:49:43,857 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T06:49:43,857 from biom/_filter.c:435: 2021-07-12T06:49:43,857 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T06:49:43,857 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T06:49:43,858 | ^~~~~~~ 2021-07-12T06:49:44,045 biom/_filter.c: In function ‘__Pyx_PyCFunction_FastCall’: 2021-07-12T06:49:44,049 biom/_filter.c:7492:13: error: too many arguments to function ‘(PyObject * (*)(PyObject *, PyObject * const*, Py_ssize_t))meth’ 2021-07-12T06:49:44,049 7492 | return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL); 2021-07-12T06:49:44,049 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,072 biom/_filter.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-12T06:49:44,076 biom/_filter.c:8057:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,076 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,077 | ^ 2021-07-12T06:49:44,077 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,077 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,077 from biom/_filter.c:4: 2021-07-12T06:49:44,077 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T06:49:44,077 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T06:49:44,077 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,081 biom/_filter.c:8057:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,082 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,082 | ^ 2021-07-12T06:49:44,082 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,082 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,082 from biom/_filter.c:4: 2021-07-12T06:49:44,082 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T06:49:44,082 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T06:49:44,083 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,086 biom/_filter.c:8057:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,086 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,086 | ^ 2021-07-12T06:49:44,087 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,087 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,087 from biom/_filter.c:4: 2021-07-12T06:49:44,087 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T06:49:44,087 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T06:49:44,087 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,091 biom/_filter.c:8057:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,091 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,091 | ^ 2021-07-12T06:49:44,091 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,091 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,091 from biom/_filter.c:4: 2021-07-12T06:49:44,092 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T06:49:44,092 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T06:49:44,092 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,096 biom/_filter.c:8057:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,096 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,096 | ^ 2021-07-12T06:49:44,096 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,096 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,096 from biom/_filter.c:4: 2021-07-12T06:49:44,096 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T06:49:44,096 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T06:49:44,097 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,100 biom/_filter.c:8057:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,100 8057 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,101 | ^ 2021-07-12T06:49:44,101 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,101 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,101 from biom/_filter.c:4: 2021-07-12T06:49:44,101 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T06:49:44,101 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T06:49:44,101 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,106 biom/_filter.c:8073:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,106 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,107 | ^ 2021-07-12T06:49:44,107 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,107 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,107 from biom/_filter.c:4: 2021-07-12T06:49:44,107 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T06:49:44,107 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T06:49:44,107 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,111 biom/_filter.c:8073:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,111 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,111 | ^ 2021-07-12T06:49:44,111 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,111 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,112 from biom/_filter.c:4: 2021-07-12T06:49:44,112 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T06:49:44,112 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T06:49:44,112 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,116 biom/_filter.c:8073:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,116 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,116 | ^ 2021-07-12T06:49:44,116 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,116 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,116 from biom/_filter.c:4: 2021-07-12T06:49:44,116 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T06:49:44,117 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T06:49:44,117 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,120 biom/_filter.c:8073:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,121 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,121 | ^ 2021-07-12T06:49:44,121 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,121 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,121 from biom/_filter.c:4: 2021-07-12T06:49:44,121 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T06:49:44,121 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T06:49:44,121 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,125 biom/_filter.c:8073:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,125 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,125 | ^ 2021-07-12T06:49:44,126 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,126 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,126 from biom/_filter.c:4: 2021-07-12T06:49:44,126 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T06:49:44,126 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T06:49:44,126 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,130 biom/_filter.c:8073:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T06:49:44,130 8073 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T06:49:44,130 | ^ 2021-07-12T06:49:44,130 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T06:49:44,130 from /usr/include/python3.9/Python.h:97, 2021-07-12T06:49:44,130 from biom/_filter.c:4: 2021-07-12T06:49:44,131 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T06:49:44,131 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T06:49:44,131 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T06:49:44,153 biom/_filter.c: In function ‘__Pyx__ExceptionSave’: 2021-07-12T06:49:44,160 biom/_filter.c:8393:21: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T06:49:44,160 8393 | *type = tstate->exc_type; 2021-07-12T06:49:44,160 | ^~~~~~~~ 2021-07-12T06:49:44,161 | curexc_type 2021-07-12T06:49:44,167 biom/_filter.c:8394:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T06:49:44,167 8394 | *value = tstate->exc_value; 2021-07-12T06:49:44,168 | ^~~~~~~~~ 2021-07-12T06:49:44,168 | curexc_value 2021-07-12T06:49:44,174 biom/_filter.c:8395:19: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T06:49:44,175 8395 | *tb = tstate->exc_traceback; 2021-07-12T06:49:44,175 | ^~~~~~~~~~~~~ 2021-07-12T06:49:44,175 | curexc_traceback 2021-07-12T06:49:44,175 biom/_filter.c: In function ‘__Pyx__ExceptionReset’: 2021-07-12T06:49:44,182 biom/_filter.c:8402:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T06:49:44,182 8402 | tmp_type = tstate->exc_type; 2021-07-12T06:49:44,182 | ^~~~~~~~ 2021-07-12T06:49:44,182 | curexc_type 2021-07-12T06:49:44,189 biom/_filter.c:8403:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T06:49:44,189 8403 | tmp_value = tstate->exc_value; 2021-07-12T06:49:44,189 | ^~~~~~~~~ 2021-07-12T06:49:44,189 | curexc_value 2021-07-12T06:49:44,196 biom/_filter.c:8404:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T06:49:44,196 8404 | tmp_tb = tstate->exc_traceback; 2021-07-12T06:49:44,196 | ^~~~~~~~~~~~~ 2021-07-12T06:49:44,196 | curexc_traceback 2021-07-12T06:49:44,203 biom/_filter.c:8405:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T06:49:44,203 8405 | tstate->exc_type = type; 2021-07-12T06:49:44,203 | ^~~~~~~~ 2021-07-12T06:49:44,203 | curexc_type 2021-07-12T06:49:44,210 biom/_filter.c:8406:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T06:49:44,210 8406 | tstate->exc_value = value; 2021-07-12T06:49:44,210 | ^~~~~~~~~ 2021-07-12T06:49:44,211 | curexc_value 2021-07-12T06:49:44,217 biom/_filter.c:8407:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T06:49:44,218 8407 | tstate->exc_traceback = tb; 2021-07-12T06:49:44,218 | ^~~~~~~~~~~~~ 2021-07-12T06:49:44,218 | curexc_traceback 2021-07-12T06:49:44,223 biom/_filter.c: In function ‘__Pyx__GetException’: 2021-07-12T06:49:44,230 biom/_filter.c:8462:24: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T06:49:44,230 8462 | tmp_type = tstate->exc_type; 2021-07-12T06:49:44,230 | ^~~~~~~~ 2021-07-12T06:49:44,230 | curexc_type 2021-07-12T06:49:44,237 biom/_filter.c:8463:25: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T06:49:44,237 8463 | tmp_value = tstate->exc_value; 2021-07-12T06:49:44,237 | ^~~~~~~~~ 2021-07-12T06:49:44,238 | curexc_value 2021-07-12T06:49:44,244 biom/_filter.c:8464:22: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T06:49:44,244 8464 | tmp_tb = tstate->exc_traceback; 2021-07-12T06:49:44,245 | ^~~~~~~~~~~~~ 2021-07-12T06:49:44,245 | curexc_traceback 2021-07-12T06:49:44,251 biom/_filter.c:8465:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_type’; did you mean ‘curexc_type’? 2021-07-12T06:49:44,252 8465 | tstate->exc_type = local_type; 2021-07-12T06:49:44,252 | ^~~~~~~~ 2021-07-12T06:49:44,252 | curexc_type 2021-07-12T06:49:44,259 biom/_filter.c:8466:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_value’; did you mean ‘curexc_value’? 2021-07-12T06:49:44,259 8466 | tstate->exc_value = local_value; 2021-07-12T06:49:44,259 | ^~~~~~~~~ 2021-07-12T06:49:44,259 | curexc_value 2021-07-12T06:49:44,266 biom/_filter.c:8467:13: error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named ‘exc_traceback’; did you mean ‘curexc_traceback’? 2021-07-12T06:49:44,266 8467 | tstate->exc_traceback = local_tb; 2021-07-12T06:49:44,266 | ^~~~~~~~~~~~~ 2021-07-12T06:49:44,266 | curexc_traceback 2021-07-12T06:49:44,412 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2021-07-12T06:49:44,527 Building wheel for biom-format (setup.py): finished with status 'error' 2021-07-12T06:49:44,528 ERROR: Failed building wheel for biom-format 2021-07-12T06:49:44,529 Running setup.py clean for biom-format 2021-07-12T06:49:44,529 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-p2as7ymr/biom-format_c5c8226f622c447da689b2dd4b8dbde3/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-p2as7ymr/biom-format_c5c8226f622c447da689b2dd4b8dbde3/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' clean --all 2021-07-12T06:49:45,833 running clean 2021-07-12T06:49:45,836 removing 'build/temp.linux-armv7l-3.9' (and everything under it) 2021-07-12T06:49:45,838 removing 'build/lib.linux-armv7l-3.9' (and everything under it) 2021-07-12T06:49:45,856 'build/bdist.linux-armv7l' does not exist -- can't clean it 2021-07-12T06:49:45,856 'build/scripts-3.9' does not exist -- can't clean it 2021-07-12T06:49:45,856 removing 'build' 2021-07-12T06:49:45,950 Failed to build biom-format 2021-07-12T06:49:45,951 ERROR: Failed to build one or more wheels 2021-07-12T06:49:45,952 Exception information: 2021-07-12T06:49:45,952 Traceback (most recent call last): 2021-07-12T06:49:45,952 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/base_command.py", line 180, in _main 2021-07-12T06:49:45,952 status = self.run(options, args) 2021-07-12T06:49:45,952 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/cli/req_command.py", line 205, in wrapper 2021-07-12T06:49:45,952 return func(self, options, args) 2021-07-12T06:49:45,952 File "/home/piwheels/.local/lib/python3.9/site-packages/pip/_internal/commands/wheel.py", line 174, in run 2021-07-12T06:49:45,952 raise CommandError( 2021-07-12T06:49:45,952 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2021-07-12T06:49:45,955 Removed build tracker: '/tmp/pip-req-tracker-5_fkodhb'