2021-07-12T08:16:10,465 Created temporary directory: /tmp/pip-ephem-wheel-cache-ljruu2jv 2021-07-12T08:16:10,468 Created temporary directory: /tmp/pip-req-tracker-el3my43o 2021-07-12T08:16:10,469 Initialized build tracking at /tmp/pip-req-tracker-el3my43o 2021-07-12T08:16:10,469 Created build tracker: /tmp/pip-req-tracker-el3my43o 2021-07-12T08:16:10,469 Entered build tracker: /tmp/pip-req-tracker-el3my43o 2021-07-12T08:16:10,470 Created temporary directory: /tmp/pip-wheel-1bruztw5 2021-07-12T08:16:10,499 1 location(s) to search for versions of gat: 2021-07-12T08:16:10,499 * https://pypi.org/simple/gat/ 2021-07-12T08:16:10,500 Fetching project page and analyzing links: https://pypi.org/simple/gat/ 2021-07-12T08:16:10,500 Getting page https://pypi.org/simple/gat/ 2021-07-12T08:16:10,502 Found index url https://pypi.org/simple 2021-07-12T08:16:10,596 Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1 2021-07-12T08:16:10,596 Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2 2021-07-12T08:16:10,597 Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1 2021-07-12T08:16:10,597 Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2 2021-07-12T08:16:10,597 Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1 2021-07-12T08:16:10,597 Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2 2021-07-12T08:16:10,598 Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0 2021-07-12T08:16:10,598 Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1 2021-07-12T08:16:10,598 Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2 2021-07-12T08:16:10,598 Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3 2021-07-12T08:16:10,599 Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4 2021-07-12T08:16:10,599 Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5 2021-07-12T08:16:10,599 Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6 2021-07-12T08:16:10,599 Skipping link: not a file: https://pypi.org/simple/gat/ 2021-07-12T08:16:10,619 Given no hashes to check 1 links for project 'gat': discarding no candidates 2021-07-12T08:16:10,638 Collecting gat==1.3.2 2021-07-12T08:16:10,639 Created temporary directory: /tmp/pip-unpack-rk6l2wvk 2021-07-12T08:16:10,943 Downloading gat-1.3.2.tar.gz (90 kB) 2021-07-12T08:16:11,075 Added gat==1.3.2 from https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e to build tracker '/tmp/pip-req-tracker-el3my43o' 2021-07-12T08:16:11,076 Running setup.py (path:/tmp/pip-wheel-1bruztw5/gat_b19ea3f496a54b87be0fdc577df9500b/setup.py) egg_info for package gat 2021-07-12T08:16:11,077 Created temporary directory: /tmp/pip-pip-egg-info-jgtp5btj 2021-07-12T08:16:11,077 Running command python setup.py egg_info 2021-07-12T08:16:12,457 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-12T08:16:12,458 warnings.warn( 2021-07-12T08:16:12,611 running egg_info 2021-07-12T08:16:12,613 creating /tmp/pip-pip-egg-info-jgtp5btj/gat.egg-info 2021-07-12T08:16:12,615 writing /tmp/pip-pip-egg-info-jgtp5btj/gat.egg-info/PKG-INFO 2021-07-12T08:16:12,617 writing dependency_links to /tmp/pip-pip-egg-info-jgtp5btj/gat.egg-info/dependency_links.txt 2021-07-12T08:16:12,620 writing requirements to /tmp/pip-pip-egg-info-jgtp5btj/gat.egg-info/requires.txt 2021-07-12T08:16:12,621 writing top-level names to /tmp/pip-pip-egg-info-jgtp5btj/gat.egg-info/top_level.txt 2021-07-12T08:16:12,622 writing manifest file '/tmp/pip-pip-egg-info-jgtp5btj/gat.egg-info/SOURCES.txt' 2021-07-12T08:16:12,806 reading manifest file '/tmp/pip-pip-egg-info-jgtp5btj/gat.egg-info/SOURCES.txt' 2021-07-12T08:16:12,808 reading manifest template 'MANIFEST.in' 2021-07-12T08:16:12,810 warning: no files found matching 'COPYING' 2021-07-12T08:16:12,810 warning: no files found matching 'INSTALL' 2021-07-12T08:16:12,810 warning: no files found matching 'KNOWN_BUGS' 2021-07-12T08:16:12,811 warning: no files found matching 'THANKS' 2021-07-12T08:16:12,818 writing manifest file '/tmp/pip-pip-egg-info-jgtp5btj/gat.egg-info/SOURCES.txt' 2021-07-12T08:16:12,932 Source in /tmp/pip-wheel-1bruztw5/gat_b19ea3f496a54b87be0fdc577df9500b has version 1.3.2, which satisfies requirement gat==1.3.2 from https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e 2021-07-12T08:16:12,933 Removed gat==1.3.2 from https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e from build tracker '/tmp/pip-req-tracker-el3my43o' 2021-07-12T08:16:12,937 Created temporary directory: /tmp/pip-unpack-cybstx35 2021-07-12T08:16:12,937 Building wheels for collected packages: gat 2021-07-12T08:16:12,941 Created temporary directory: /tmp/pip-wheel-pwl11eov 2021-07-12T08:16:12,942 Building wheel for gat (setup.py): started 2021-07-12T08:16:12,942 Destination directory: /tmp/pip-wheel-pwl11eov 2021-07-12T08:16:12,942 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-1bruztw5/gat_b19ea3f496a54b87be0fdc577df9500b/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-1bruztw5/gat_b19ea3f496a54b87be0fdc577df9500b/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-pwl11eov 2021-07-12T08:16:14,268 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-12T08:16:14,269 warnings.warn( 2021-07-12T08:16:14,427 running bdist_wheel 2021-07-12T08:16:14,432 running build 2021-07-12T08:16:14,433 running build_py 2021-07-12T08:16:14,567 creating build 2021-07-12T08:16:14,567 creating build/lib.linux-armv7l-3.9 2021-07-12T08:16:14,568 creating build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:14,569 copying gat/IO.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:14,571 copying gat/IOTools.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:14,574 copying gat/Stats.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:14,576 copying gat/__init__.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:14,579 copying gat/Bed.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:14,581 copying gat/Experiment.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:14,584 running build_ext 2021-07-12T08:16:14,652 cythoning gat/CoordinateList.pyx to gat/CoordinateList.c 2021-07-12T08:16:15,273 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-1bruztw5/gat_b19ea3f496a54b87be0fdc577df9500b/gat/CoordinateList.pxd 2021-07-12T08:16:15,273 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:16:15,553 cythoning gat/SegmentList.pyx to gat/SegmentList.c 2021-07-12T08:16:15,558 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-1bruztw5/gat_b19ea3f496a54b87be0fdc577df9500b/gat/SegmentList.pxd 2021-07-12T08:16:15,558 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:16:21,645 cythoning gat/PositionList.pyx to gat/PositionList.c 2021-07-12T08:16:21,651 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-1bruztw5/gat_b19ea3f496a54b87be0fdc577df9500b/gat/PositionList.pxd 2021-07-12T08:16:21,652 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:16:24,517 cythoning gat/Engine.pyx to gat/Engine.c 2021-07-12T08:16:24,523 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-1bruztw5/gat_b19ea3f496a54b87be0fdc577df9500b/gat/Engine.pxd 2021-07-12T08:16:24,523 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:16:33,927 building 'gat.CoordinateList' extension 2021-07-12T08:16:33,928 creating build/temp.linux-armv7l-3.9 2021-07-12T08:16:33,928 creating build/temp.linux-armv7l-3.9/gat 2021-07-12T08:16:33,929 creating build/temp.linux-armv7l-3.9/utils 2021-07-12T08:16:33,929 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/CoordinateList.c -o build/temp.linux-armv7l-3.9/gat/CoordinateList.o 2021-07-12T08:16:36,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:16:36,937 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:16:36,937 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:16:36,937 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:16:36,937 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:16:36,938 | | 2021-07-12T08:16:36,938 | size_t * {aka unsigned int *} 2021-07-12T08:16:36,938 In file included from /usr/include/zlib.h:34, 2021-07-12T08:16:36,939 from utils/gat_utils.c:2: 2021-07-12T08:16:36,939 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:16:36,939 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:16:36,940 | ^~ 2021-07-12T08:16:37,056 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/CoordinateList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:16:37,191 building 'gat.SegmentList' extension 2021-07-12T08:16:37,192 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/SegmentList.c -o build/temp.linux-armv7l-3.9/gat/SegmentList.o 2021-07-12T08:16:37,596 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T08:16:37,596 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T08:16:37,596 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T08:16:37,596 from gat/SegmentList.c:623: 2021-07-12T08:16:37,596 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T08:16:37,597 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T08:16:37,597 | ^~~~~~~ 2021-07-12T08:16:37,732 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim_ends’: 2021-07-12T08:16:37,735 gat/SegmentList.c:7383:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:16:37,735 7383 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-12T08:16:37,736 | ^ 2021-07-12T08:16:37,736 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:37,736 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:37,736 | ^ 2021-07-12T08:16:37,741 gat/SegmentList.c:7433:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,741 7433 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,741 | ^~ 2021-07-12T08:16:37,746 gat/SegmentList.c:7568:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,746 7568 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,746 | ^~ 2021-07-12T08:16:37,754 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__resize’: 2021-07-12T08:16:37,758 gat/SegmentList.c:7887:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,758 7887 | if (unlikely(!((__pyx_v_nsegments >= __pyx_v_self->nsegments) != 0))) { 2021-07-12T08:16:37,758 | ^~ 2021-07-12T08:16:37,758 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:37,759 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:37,759 | ^ 2021-07-12T08:16:37,761 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_insert’: 2021-07-12T08:16:37,765 gat/SegmentList.c:8135:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-12T08:16:37,766 8135 | if (((__pyx_t_4 > __pyx_t_5) != 0)) { 2021-07-12T08:16:37,766 | ^ 2021-07-12T08:16:37,772 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim’: 2021-07-12T08:16:37,776 gat/SegmentList.c:8396:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:16:37,776 8396 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-12T08:16:37,776 | ^ 2021-07-12T08:16:37,776 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:37,776 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:37,777 | ^ 2021-07-12T08:16:37,782 gat/SegmentList.c:8464:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,782 8464 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,782 | ^~ 2021-07-12T08:16:37,788 gat/SegmentList.c:8541:31: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,788 8541 | __pyx_t_9 = ((__pyx_v_p == (__pyx_v_self->segments[__pyx_v_idx]).start) != 0); 2021-07-12T08:16:37,788 | ^~ 2021-07-12T08:16:37,793 gat/SegmentList.c:8649:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,793 8649 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,793 | ^~ 2021-07-12T08:16:37,801 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_normalize’: 2021-07-12T08:16:37,805 gat/SegmentList.c:8933:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,806 8933 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,806 | ^ 2021-07-12T08:16:37,812 gat/SegmentList.c:8961:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,812 8961 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,812 | ^~ 2021-07-12T08:16:37,816 gat/SegmentList.c:9030:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,816 9030 | __pyx_t_5 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,817 | ^ 2021-07-12T08:16:37,823 gat/SegmentList.c:9107:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,823 9107 | if (unlikely(!((__pyx_v_insertion_idx < __pyx_v_self->nsegments) != 0))) { 2021-07-12T08:16:37,823 | ^ 2021-07-12T08:16:37,823 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:37,824 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:37,824 | ^ 2021-07-12T08:16:37,830 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_merge’: 2021-07-12T08:16:37,834 gat/SegmentList.c:9449:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,835 9449 | __pyx_t_7 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,835 | ^ 2021-07-12T08:16:37,841 gat/SegmentList.c:9477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,841 9477 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,842 | ^~ 2021-07-12T08:16:37,846 gat/SegmentList.c:9546:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,846 9546 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,846 | ^ 2021-07-12T08:16:37,855 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_check’: 2021-07-12T08:16:37,860 gat/SegmentList.c:9958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,860 9958 | for (__pyx_v_idx = 1; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:37,860 | ^ 2021-07-12T08:16:37,864 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__getInsertionPoint’: 2021-07-12T08:16:37,869 gat/SegmentList.c:10294:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,870 10294 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,870 | ^~ 2021-07-12T08:16:37,883 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlap’: 2021-07-12T08:16:37,889 gat/SegmentList.c:11010:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,889 11010 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,889 | ^~ 2021-07-12T08:16:37,894 gat/SegmentList.c:11078:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,895 11078 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,895 | ^ 2021-07-12T08:16:37,897 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getOverlappingSegments’: 2021-07-12T08:16:37,903 gat/SegmentList.c:11189:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,903 11189 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,903 | ^~ 2021-07-12T08:16:37,909 gat/SegmentList.c:11269:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,909 11269 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,909 | ^ 2021-07-12T08:16:37,938 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlapWithSegments’: 2021-07-12T08:16:37,944 gat/SegmentList.c:12032:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,944 12032 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,944 | ^ 2021-07-12T08:16:37,950 gat/SegmentList.c:12038:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,950 12038 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:37,950 | ^ 2021-07-12T08:16:37,961 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersectionWithSegments’: 2021-07-12T08:16:37,967 gat/SegmentList.c:12580:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,967 12580 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:37,967 | ^ 2021-07-12T08:16:37,973 gat/SegmentList.c:12586:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,974 12586 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:37,974 | ^ 2021-07-12T08:16:37,983 gat/SegmentList.c:12742:50: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-12T08:16:37,983 12742 | __pyx_t_8 = (__pyx_v_other_segment.start <= __pyx_t_11); 2021-07-12T08:16:37,983 | ^~ 2021-07-12T08:16:37,989 gat/SegmentList.c:12752:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:37,989 12752 | __pyx_t_8 = (__pyx_t_11 < __pyx_v_other_segment.end); 2021-07-12T08:16:37,989 | ^ 2021-07-12T08:16:38,001 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_36getLengthDistribution’: 2021-07-12T08:16:38,007 gat/SegmentList.c:13254:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,007 13254 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_15; __pyx_v_idx++) { 2021-07-12T08:16:38,007 | ^ 2021-07-12T08:16:38,019 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_truncate’: 2021-07-12T08:16:38,026 gat/SegmentList.c:13543:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,026 13543 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:16:38,026 | ^ 2021-07-12T08:16:38,033 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_subtract’: 2021-07-12T08:16:38,040 gat/SegmentList.c:13929:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,040 13929 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:38,040 | ^ 2021-07-12T08:16:38,047 gat/SegmentList.c:13935:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,047 13935 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:38,047 | ^ 2021-07-12T08:16:38,057 gat/SegmentList.c:13947:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,057 13947 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-12T08:16:38,057 | ^~ 2021-07-12T08:16:38,064 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_summarize’: 2021-07-12T08:16:38,071 gat/SegmentList.c:14519:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,071 14519 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:38,072 | ^ 2021-07-12T08:16:38,080 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromStart’: 2021-07-12T08:16:38,087 gat/SegmentList.c:14800:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,087 14800 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-12T08:16:38,088 | ^ 2021-07-12T08:16:38,098 gat/SegmentList.c:14915:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,098 14915 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:38,098 | ^~ 2021-07-12T08:16:38,109 gat/SegmentList.c:15016:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,109 15016 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:38,109 | ^~ 2021-07-12T08:16:38,122 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromEnd’: 2021-07-12T08:16:38,129 gat/SegmentList.c:15311:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,129 15311 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-12T08:16:38,130 | ^ 2021-07-12T08:16:38,140 gat/SegmentList.c:15426:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,140 15426 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:38,140 | ^~ 2021-07-12T08:16:38,156 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_filter’: 2021-07-12T08:16:38,164 gat/SegmentList.c:15966:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,164 15966 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:38,164 | ^ 2021-07-12T08:16:38,172 gat/SegmentList.c:15972:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,172 15972 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:38,172 | ^ 2021-07-12T08:16:38,184 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersect’: 2021-07-12T08:16:38,192 gat/SegmentList.c:16635:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,193 16635 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:38,193 | ^ 2021-07-12T08:16:38,201 gat/SegmentList.c:16641:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,201 16641 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:38,201 | ^ 2021-07-12T08:16:38,213 gat/SegmentList.c:16821:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,213 16821 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-12T08:16:38,213 | ^~ 2021-07-12T08:16:38,220 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_extend_segments’: 2021-07-12T08:16:38,229 gat/SegmentList.c:17135:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,229 17135 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:38,229 | ^ 2021-07-12T08:16:38,236 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_expand_segments’: 2021-07-12T08:16:38,245 gat/SegmentList.c:17369:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,245 17369 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_7; __pyx_v_idx++) { 2021-07-12T08:16:38,245 | ^ 2021-07-12T08:16:38,247 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_54shift’: 2021-07-12T08:16:38,256 gat/SegmentList.c:17560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,256 17560 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-12T08:16:38,256 | ^ 2021-07-12T08:16:38,262 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_sum’: 2021-07-12T08:16:38,271 gat/SegmentList.c:17732:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,271 17732 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:38,271 | ^ 2021-07-12T08:16:38,273 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_58largest’: 2021-07-12T08:16:38,282 gat/SegmentList.c:17929:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,282 17929 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_3; __pyx_v_idx++) { 2021-07-12T08:16:38,282 | ^ 2021-07-12T08:16:38,312 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_74asList’: 2021-07-12T08:16:38,322 gat/SegmentList.c:19075:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,322 19075 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:16:38,322 | ^ 2021-07-12T08:16:38,323 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_76asLengths’: 2021-07-12T08:16:38,333 gat/SegmentList.c:19189:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,333 19189 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:16:38,333 | ^ 2021-07-12T08:16:38,343 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_82compare’: 2021-07-12T08:16:38,353 gat/SegmentList.c:19578:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:38,353 19578 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_8; __pyx_v_idx++) { 2021-07-12T08:16:38,353 | ^ 2021-07-12T08:16:39,346 At top level: 2021-07-12T08:16:39,347 gat/SegmentList.c:3559:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpDouble’ defined but not used [-Wunused-function] 2021-07-12T08:16:39,348 3559 | static int __pyx_f_3gat_11SegmentList_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:16:39,348 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:16:39,349 gat/SegmentList.c:3525:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpPosition’ defined but not used [-Wunused-function] 2021-07-12T08:16:39,350 3525 | static int __pyx_f_3gat_11SegmentList_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:16:39,350 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:16:54,850 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:16:54,988 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:16:54,989 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:16:54,989 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:16:54,989 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:16:54,989 | | 2021-07-12T08:16:54,989 | size_t * {aka unsigned int *} 2021-07-12T08:16:54,991 In file included from /usr/include/zlib.h:34, 2021-07-12T08:16:54,991 from utils/gat_utils.c:2: 2021-07-12T08:16:54,991 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:16:54,991 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:16:54,991 | ^~ 2021-07-12T08:16:55,109 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/SegmentList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:16:55,302 building 'gat.PositionList' extension 2021-07-12T08:16:55,302 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/PositionList.c -o build/temp.linux-armv7l-3.9/gat/PositionList.o 2021-07-12T08:16:55,772 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_normalize’: 2021-07-12T08:16:55,775 gat/PositionList.c:5779:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:55,775 5779 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:55,775 | ^ 2021-07-12T08:16:55,776 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList__resize’: 2021-07-12T08:16:55,779 gat/PositionList.c:5986:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:55,779 5986 | if (unlikely(!((__pyx_v_npositions >= __pyx_v_self->npositions) != 0))) { 2021-07-12T08:16:55,779 | ^~ 2021-07-12T08:16:55,780 gat/PositionList.c:808:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:55,780 808 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:55,780 | ^ 2021-07-12T08:16:55,782 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_overlap’: 2021-07-12T08:16:55,785 gat/PositionList.c:6351:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:55,786 6351 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->npositions) != 0); 2021-07-12T08:16:55,786 | ^~ 2021-07-12T08:16:55,790 gat/PositionList.c:6478:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:55,790 6478 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->npositions) != 0); 2021-07-12T08:16:55,791 | ^ 2021-07-12T08:16:55,806 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersectionWithSegments’: 2021-07-12T08:16:55,809 gat/PositionList.c:7014:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:55,809 7014 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-12T08:16:55,809 | ^ 2021-07-12T08:16:55,812 gat/PositionList.c:7020:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:55,813 7020 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:55,813 | ^ 2021-07-12T08:16:55,822 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersect’: 2021-07-12T08:16:55,826 gat/PositionList.c:7554:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:55,826 7554 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-12T08:16:55,826 | ^ 2021-07-12T08:16:55,830 gat/PositionList.c:7560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:55,830 7560 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:55,830 | ^ 2021-07-12T08:16:55,835 gat/PositionList.c: In function ‘__pyx_pf_3gat_12PositionList_12PositionList_30asList’: 2021-07-12T08:16:55,838 gat/PositionList.c:7945:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:55,839 7945 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:16:55,839 | ^ 2021-07-12T08:16:56,175 At top level: 2021-07-12T08:16:56,175 gat/PositionList.c:1800:18: warning: ‘__pyx_f_3gat_12PositionList_force_bytes’ defined but not used [-Wunused-function] 2021-07-12T08:16:56,176 1800 | static PyObject *__pyx_f_3gat_12PositionList_force_bytes(PyObject *__pyx_v_s, struct __pyx_opt_args_3gat_12PositionList_force_bytes *__pyx_optional_args) { 2021-07-12T08:16:56,176 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:03,648 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:17:03,784 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:17:03,784 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:17:03,785 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:17:03,785 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:03,785 | | 2021-07-12T08:17:03,785 | size_t * {aka unsigned int *} 2021-07-12T08:17:03,786 In file included from /usr/include/zlib.h:34, 2021-07-12T08:17:03,786 from utils/gat_utils.c:2: 2021-07-12T08:17:03,787 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:17:03,787 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:17:03,787 | ^~ 2021-07-12T08:17:03,905 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/PositionList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:17:04,053 building 'gat.Engine' extension 2021-07-12T08:17:04,054 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/Engine.c -o build/temp.linux-armv7l-3.9/gat/Engine.o 2021-07-12T08:17:04,452 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T08:17:04,453 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T08:17:04,453 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T08:17:04,453 from gat/Engine.c:621: 2021-07-12T08:17:04,453 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T08:17:04,453 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T08:17:04,453 | ^~~~~~~ 2021-07-12T08:17:04,585 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_33SegmentListSamplerWithEdgeEffects___init__’: 2021-07-12T08:17:04,588 gat/Engine.c:6588:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:17:04,588 6588 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-12T08:17:04,589 | ^ 2021-07-12T08:17:04,607 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_18SegmentListSampler___init__’: 2021-07-12T08:17:04,611 gat/Engine.c:7553:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:17:04,611 7553 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-12T08:17:04,611 | ^ 2021-07-12T08:17:04,618 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_18SegmentListSampler_sample’: 2021-07-12T08:17:04,622 gat/Engine.c:7769:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-12T08:17:04,622 7769 | __pyx_t_8 = (__pyx_v_segment_index < __pyx_v_self->nsegments); 2021-07-12T08:17:04,623 | ^ 2021-07-12T08:17:04,833 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_12SamplerShift_sample’: 2021-07-12T08:17:04,841 gat/Engine.c:15870:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:17:04,842 15870 | for (__pyx_v_x = 0; __pyx_v_x < __pyx_t_9; __pyx_v_x++) { 2021-07-12T08:17:04,842 | ^ 2021-07-12T08:17:05,154 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_compressSampleIndex’: 2021-07-12T08:17:05,168 gat/Engine.c:24291:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:17:05,168 24291 | __pyx_t_3 = ((__pyx_v_observed_idx < __pyx_v_l) != 0); 2021-07-12T08:17:05,168 | ^ 2021-07-12T08:17:05,191 gat/Engine.c:24450:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:17:05,192 24450 | __pyx_t_2 = ((__pyx_v_x < __pyx_v_l) != 0); 2021-07-12T08:17:05,192 | ^ 2021-07-12T08:17:07,363 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_isSampleSignificantAtPvalue’: 2021-07-12T08:17:07,393 gat/Engine.c:57637:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:17:07,394 57637 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_l) != 0); 2021-07-12T08:17:07,394 | ^ 2021-07-12T08:17:12,200 At top level: 2021-07-12T08:17:12,215 gat/Engine.c:24251:13: warning: ‘__pyx_f_3gat_6Engine_compressSampleIndex’ defined but not used [-Wunused-function] 2021-07-12T08:17:12,215 24251 | static void __pyx_f_3gat_6Engine_compressSampleIndex(__pyx_t_3gat_6Engine_EnrichmentStatistics *__pyx_v_stats) { 2021-07-12T08:17:12,215 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:12,219 gat/Engine.c:5228:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function] 2021-07-12T08:17:12,219 5228 | static int __pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:17:12,219 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:12,222 gat/Engine.c:5191:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegments’ defined but not used [-Wunused-function] 2021-07-12T08:17:12,222 5191 | static int __pyx_f_3gat_6Engine_cmpSegments(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:17:12,223 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:50,700 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_24SamplerGlobalPermutation_sample’: 2021-07-12T08:17:50,701 gat/Engine.c:526:40: warning: ‘__pyx_v_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-12T08:17:50,701 526 | #define PyInt_FromLong PyLong_FromLong 2021-07-12T08:17:50,701 | ^~~~~~~~~~~~~~~ 2021-07-12T08:17:50,712 gat/Engine.c:17948:49: note: ‘__pyx_v_start’ was declared here 2021-07-12T08:17:50,712 17948 | __pyx_t_3gat_11SegmentList_PositionDifference __pyx_v_start; 2021-07-12T08:17:50,712 | ^~~~~~~~~~~~~ 2021-07-12T08:18:24,901 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:18:25,062 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:18:25,063 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:18:25,063 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:18:25,063 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:18:25,063 | | 2021-07-12T08:18:25,063 | size_t * {aka unsigned int *} 2021-07-12T08:18:25,064 In file included from /usr/include/zlib.h:34, 2021-07-12T08:18:25,064 from utils/gat_utils.c:2: 2021-07-12T08:18:25,065 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:18:25,065 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:18:25,065 | ^~ 2021-07-12T08:18:25,186 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/Engine.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:18:25,601 running build_scripts 2021-07-12T08:18:25,602 creating build/scripts-3.9 2021-07-12T08:18:25,604 copying and adjusting scripts/gat-run.py -> build/scripts-3.9 2021-07-12T08:18:25,607 copying and adjusting scripts/gat-great.py -> build/scripts-3.9 2021-07-12T08:18:25,610 copying and adjusting scripts/gat-compare.py -> build/scripts-3.9 2021-07-12T08:18:25,612 copying and adjusting scripts/gat-plot.py -> build/scripts-3.9 2021-07-12T08:18:25,614 changing mode of build/scripts-3.9/gat-run.py from 644 to 755 2021-07-12T08:18:25,615 changing mode of build/scripts-3.9/gat-great.py from 644 to 755 2021-07-12T08:18:25,616 changing mode of build/scripts-3.9/gat-compare.py from 644 to 755 2021-07-12T08:18:25,616 changing mode of build/scripts-3.9/gat-plot.py from 644 to 755 2021-07-12T08:18:25,626 installing to build/bdist.linux-armv7l/wheel 2021-07-12T08:18:25,626 running install 2021-07-12T08:18:25,628 running install_lib 2021-07-12T08:18:25,633 creating build/bdist.linux-armv7l 2021-07-12T08:18:25,634 creating build/bdist.linux-armv7l/wheel 2021-07-12T08:18:25,636 creating build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,637 copying build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,654 copying build/lib.linux-armv7l-3.9/gat/IO.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,657 copying build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,770 copying build/lib.linux-armv7l-3.9/gat/IOTools.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,772 copying build/lib.linux-armv7l-3.9/gat/Stats.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,775 copying build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,804 copying build/lib.linux-armv7l-3.9/gat/__init__.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,807 copying build/lib.linux-armv7l-3.9/gat/Bed.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,810 copying build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,818 copying build/lib.linux-armv7l-3.9/gat/Experiment.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:25,821 running install_egg_info 2021-07-12T08:18:25,850 running egg_info 2021-07-12T08:18:25,852 writing gat.egg-info/PKG-INFO 2021-07-12T08:18:25,854 writing dependency_links to gat.egg-info/dependency_links.txt 2021-07-12T08:18:25,856 writing requirements to gat.egg-info/requires.txt 2021-07-12T08:18:25,857 writing top-level names to gat.egg-info/top_level.txt 2021-07-12T08:18:25,905 reading manifest file 'gat.egg-info/SOURCES.txt' 2021-07-12T08:18:25,911 reading manifest template 'MANIFEST.in' 2021-07-12T08:18:25,912 warning: no files found matching 'COPYING' 2021-07-12T08:18:25,913 warning: no files found matching 'INSTALL' 2021-07-12T08:18:25,913 warning: no files found matching 'KNOWN_BUGS' 2021-07-12T08:18:25,914 warning: no files found matching 'THANKS' 2021-07-12T08:18:25,923 writing manifest file 'gat.egg-info/SOURCES.txt' 2021-07-12T08:18:25,925 Copying gat.egg-info to build/bdist.linux-armv7l/wheel/gat-1.3.2-py3.9.egg-info 2021-07-12T08:18:25,943 running install_scripts 2021-07-12T08:18:25,974 creating build/bdist.linux-armv7l/wheel/gat-1.3.2.data 2021-07-12T08:18:25,975 creating build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts 2021-07-12T08:18:25,976 copying build/scripts-3.9/gat-compare.py -> build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts 2021-07-12T08:18:25,979 copying build/scripts-3.9/gat-plot.py -> build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts 2021-07-12T08:18:25,982 copying build/scripts-3.9/gat-great.py -> build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts 2021-07-12T08:18:25,985 copying build/scripts-3.9/gat-run.py -> build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts 2021-07-12T08:18:25,988 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts/gat-compare.py to 755 2021-07-12T08:18:25,988 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts/gat-plot.py to 755 2021-07-12T08:18:25,989 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts/gat-great.py to 755 2021-07-12T08:18:25,989 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.2.data/scripts/gat-run.py to 755 2021-07-12T08:18:26,012 creating build/bdist.linux-armv7l/wheel/gat-1.3.2.dist-info/WHEEL 2021-07-12T08:18:26,015 creating '/tmp/pip-wheel-pwl11eov/gat-1.3.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T08:18:26,019 adding 'gat/Bed.py' 2021-07-12T08:18:26,068 adding 'gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:18:26,961 adding 'gat/Engine.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:18:27,003 adding 'gat/Experiment.py' 2021-07-12T08:18:27,006 adding 'gat/IO.py' 2021-07-12T08:18:27,009 adding 'gat/IOTools.py' 2021-07-12T08:18:27,127 adding 'gat/PositionList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:18:27,369 adding 'gat/SegmentList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:18:27,381 adding 'gat/Stats.py' 2021-07-12T08:18:27,385 adding 'gat/__init__.py' 2021-07-12T08:18:27,389 adding 'gat-1.3.2.data/scripts/gat-compare.py' 2021-07-12T08:18:27,392 adding 'gat-1.3.2.data/scripts/gat-great.py' 2021-07-12T08:18:27,394 adding 'gat-1.3.2.data/scripts/gat-plot.py' 2021-07-12T08:18:27,396 adding 'gat-1.3.2.data/scripts/gat-run.py' 2021-07-12T08:18:27,399 adding 'gat-1.3.2.dist-info/METADATA' 2021-07-12T08:18:27,400 adding 'gat-1.3.2.dist-info/WHEEL' 2021-07-12T08:18:27,402 adding 'gat-1.3.2.dist-info/pbr.json' 2021-07-12T08:18:27,403 adding 'gat-1.3.2.dist-info/top_level.txt' 2021-07-12T08:18:27,404 adding 'gat-1.3.2.dist-info/RECORD' 2021-07-12T08:18:27,449 removing build/bdist.linux-armv7l/wheel 2021-07-12T08:18:27,948 Building wheel for gat (setup.py): finished with status 'done' 2021-07-12T08:18:27,984 Created wheel for gat: filename=gat-1.3.2-cp39-cp39-linux_armv7l.whl size=2452505 sha256=f6866bce79f1b85798880ad259cd87f586baba34e9fc40fcf6335f3570f697d8 2021-07-12T08:18:27,984 Stored in directory: /tmp/pip-ephem-wheel-cache-ljruu2jv/wheels/b6/40/e2/15f0e360b333ff28efd029f7006fdb7c726855644056349091 2021-07-12T08:18:27,995 Successfully built gat 2021-07-12T08:18:28,084 Removed build tracker: '/tmp/pip-req-tracker-el3my43o'