2021-07-12T08:16:12,865 Created temporary directory: /tmp/pip-ephem-wheel-cache-tv0gznvv 2021-07-12T08:16:12,868 Created temporary directory: /tmp/pip-req-tracker-z4i5gwug 2021-07-12T08:16:12,869 Initialized build tracking at /tmp/pip-req-tracker-z4i5gwug 2021-07-12T08:16:12,869 Created build tracker: /tmp/pip-req-tracker-z4i5gwug 2021-07-12T08:16:12,869 Entered build tracker: /tmp/pip-req-tracker-z4i5gwug 2021-07-12T08:16:12,870 Created temporary directory: /tmp/pip-wheel-yv6xegw6 2021-07-12T08:16:12,900 1 location(s) to search for versions of gat: 2021-07-12T08:16:12,900 * https://pypi.org/simple/gat/ 2021-07-12T08:16:12,900 Fetching project page and analyzing links: https://pypi.org/simple/gat/ 2021-07-12T08:16:12,901 Getting page https://pypi.org/simple/gat/ 2021-07-12T08:16:12,902 Found index url https://pypi.org/simple 2021-07-12T08:16:12,994 Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1 2021-07-12T08:16:12,995 Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2 2021-07-12T08:16:12,995 Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1 2021-07-12T08:16:12,995 Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2 2021-07-12T08:16:12,996 Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1 2021-07-12T08:16:12,996 Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2 2021-07-12T08:16:12,996 Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0 2021-07-12T08:16:12,996 Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1 2021-07-12T08:16:12,997 Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2 2021-07-12T08:16:12,997 Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3 2021-07-12T08:16:12,997 Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4 2021-07-12T08:16:12,997 Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5 2021-07-12T08:16:12,998 Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6 2021-07-12T08:16:12,998 Skipping link: not a file: https://pypi.org/simple/gat/ 2021-07-12T08:16:13,018 Given no hashes to check 1 links for project 'gat': discarding no candidates 2021-07-12T08:16:13,037 Collecting gat==1.3.3 2021-07-12T08:16:13,038 Created temporary directory: /tmp/pip-unpack-bgkspv1_ 2021-07-12T08:16:13,238 Downloading gat-1.3.3.tar.gz (89 kB) 2021-07-12T08:16:13,373 Added gat==1.3.3 from https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 to build tracker '/tmp/pip-req-tracker-z4i5gwug' 2021-07-12T08:16:13,374 Running setup.py (path:/tmp/pip-wheel-yv6xegw6/gat_d2659089c84a40ac81e5b1742f247899/setup.py) egg_info for package gat 2021-07-12T08:16:13,375 Created temporary directory: /tmp/pip-pip-egg-info-ucgsl3cq 2021-07-12T08:16:13,375 Running command python setup.py egg_info 2021-07-12T08:16:14,759 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-12T08:16:14,760 warnings.warn( 2021-07-12T08:16:14,908 running egg_info 2021-07-12T08:16:14,911 creating /tmp/pip-pip-egg-info-ucgsl3cq/gat.egg-info 2021-07-12T08:16:14,912 writing /tmp/pip-pip-egg-info-ucgsl3cq/gat.egg-info/PKG-INFO 2021-07-12T08:16:14,915 writing dependency_links to /tmp/pip-pip-egg-info-ucgsl3cq/gat.egg-info/dependency_links.txt 2021-07-12T08:16:14,918 writing requirements to /tmp/pip-pip-egg-info-ucgsl3cq/gat.egg-info/requires.txt 2021-07-12T08:16:14,919 writing top-level names to /tmp/pip-pip-egg-info-ucgsl3cq/gat.egg-info/top_level.txt 2021-07-12T08:16:14,921 writing manifest file '/tmp/pip-pip-egg-info-ucgsl3cq/gat.egg-info/SOURCES.txt' 2021-07-12T08:16:15,101 reading manifest file '/tmp/pip-pip-egg-info-ucgsl3cq/gat.egg-info/SOURCES.txt' 2021-07-12T08:16:15,104 reading manifest template 'MANIFEST.in' 2021-07-12T08:16:15,106 warning: no files found matching 'COPYING' 2021-07-12T08:16:15,107 warning: no files found matching 'INSTALL' 2021-07-12T08:16:15,107 warning: no files found matching 'KNOWN_BUGS' 2021-07-12T08:16:15,108 warning: no files found matching 'THANKS' 2021-07-12T08:16:15,116 writing manifest file '/tmp/pip-pip-egg-info-ucgsl3cq/gat.egg-info/SOURCES.txt' 2021-07-12T08:16:15,228 Source in /tmp/pip-wheel-yv6xegw6/gat_d2659089c84a40ac81e5b1742f247899 has version 1.3.3, which satisfies requirement gat==1.3.3 from https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 2021-07-12T08:16:15,229 Removed gat==1.3.3 from https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 from build tracker '/tmp/pip-req-tracker-z4i5gwug' 2021-07-12T08:16:15,237 Created temporary directory: /tmp/pip-unpack-0rtzikru 2021-07-12T08:16:15,237 Building wheels for collected packages: gat 2021-07-12T08:16:15,241 Created temporary directory: /tmp/pip-wheel-x7x4giq0 2021-07-12T08:16:15,241 Building wheel for gat (setup.py): started 2021-07-12T08:16:15,242 Destination directory: /tmp/pip-wheel-x7x4giq0 2021-07-12T08:16:15,242 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-yv6xegw6/gat_d2659089c84a40ac81e5b1742f247899/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-yv6xegw6/gat_d2659089c84a40ac81e5b1742f247899/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-x7x4giq0 2021-07-12T08:16:16,600 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-12T08:16:16,601 warnings.warn( 2021-07-12T08:16:16,761 running bdist_wheel 2021-07-12T08:16:16,766 running build 2021-07-12T08:16:16,766 running build_py 2021-07-12T08:16:16,901 creating build 2021-07-12T08:16:16,901 creating build/lib.linux-armv7l-3.9 2021-07-12T08:16:16,902 creating build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:16,903 copying gat/Experiment.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:16,906 copying gat/IOTools.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:16,909 copying gat/Bed.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:16,911 copying gat/IO.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:16,914 copying gat/Stats.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:16,917 copying gat/__init__.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:16:16,920 running build_ext 2021-07-12T08:16:16,985 cythoning gat/CoordinateList.pyx to gat/CoordinateList.c 2021-07-12T08:16:17,614 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-yv6xegw6/gat_d2659089c84a40ac81e5b1742f247899/gat/CoordinateList.pxd 2021-07-12T08:16:17,615 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:16:17,905 cythoning gat/SegmentList.pyx to gat/SegmentList.c 2021-07-12T08:16:17,911 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-yv6xegw6/gat_d2659089c84a40ac81e5b1742f247899/gat/SegmentList.pxd 2021-07-12T08:16:17,911 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:16:24,036 cythoning gat/PositionList.pyx to gat/PositionList.c 2021-07-12T08:16:24,042 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-yv6xegw6/gat_d2659089c84a40ac81e5b1742f247899/gat/PositionList.pxd 2021-07-12T08:16:24,043 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:16:26,932 cythoning gat/Engine.pyx to gat/Engine.c 2021-07-12T08:16:26,940 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-yv6xegw6/gat_d2659089c84a40ac81e5b1742f247899/gat/Engine.pxd 2021-07-12T08:16:26,940 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:16:36,356 building 'gat.CoordinateList' extension 2021-07-12T08:16:36,357 creating build/temp.linux-armv7l-3.9 2021-07-12T08:16:36,358 creating build/temp.linux-armv7l-3.9/gat 2021-07-12T08:16:36,359 creating build/temp.linux-armv7l-3.9/utils 2021-07-12T08:16:36,359 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/CoordinateList.c -o build/temp.linux-armv7l-3.9/gat/CoordinateList.o 2021-07-12T08:16:39,224 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:16:39,362 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:16:39,362 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:16:39,362 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:16:39,363 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:16:39,363 | | 2021-07-12T08:16:39,363 | size_t * {aka unsigned int *} 2021-07-12T08:16:39,363 In file included from /usr/include/zlib.h:34, 2021-07-12T08:16:39,364 from utils/gat_utils.c:2: 2021-07-12T08:16:39,364 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:16:39,364 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:16:39,365 | ^~ 2021-07-12T08:16:39,481 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/CoordinateList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:16:39,622 building 'gat.SegmentList' extension 2021-07-12T08:16:39,623 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/SegmentList.c -o build/temp.linux-armv7l-3.9/gat/SegmentList.o 2021-07-12T08:16:40,028 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T08:16:40,028 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T08:16:40,028 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T08:16:40,028 from gat/SegmentList.c:623: 2021-07-12T08:16:40,029 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T08:16:40,029 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T08:16:40,029 | ^~~~~~~ 2021-07-12T08:16:40,167 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim_ends’: 2021-07-12T08:16:40,172 gat/SegmentList.c:7383:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:16:40,172 7383 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-12T08:16:40,172 | ^ 2021-07-12T08:16:40,172 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:40,172 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:40,172 | ^ 2021-07-12T08:16:40,178 gat/SegmentList.c:7433:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,179 7433 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,179 | ^~ 2021-07-12T08:16:40,186 gat/SegmentList.c:7568:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,186 7568 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,186 | ^~ 2021-07-12T08:16:40,195 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__resize’: 2021-07-12T08:16:40,200 gat/SegmentList.c:7887:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,200 7887 | if (unlikely(!((__pyx_v_nsegments >= __pyx_v_self->nsegments) != 0))) { 2021-07-12T08:16:40,200 | ^~ 2021-07-12T08:16:40,200 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:40,201 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:40,201 | ^ 2021-07-12T08:16:40,203 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_insert’: 2021-07-12T08:16:40,209 gat/SegmentList.c:8135:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-12T08:16:40,209 8135 | if (((__pyx_t_4 > __pyx_t_5) != 0)) { 2021-07-12T08:16:40,209 | ^ 2021-07-12T08:16:40,216 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim’: 2021-07-12T08:16:40,221 gat/SegmentList.c:8396:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:16:40,221 8396 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-12T08:16:40,221 | ^ 2021-07-12T08:16:40,222 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:40,222 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:40,222 | ^ 2021-07-12T08:16:40,229 gat/SegmentList.c:8464:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,229 8464 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,229 | ^~ 2021-07-12T08:16:40,237 gat/SegmentList.c:8541:31: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,237 8541 | __pyx_t_9 = ((__pyx_v_p == (__pyx_v_self->segments[__pyx_v_idx]).start) != 0); 2021-07-12T08:16:40,237 | ^~ 2021-07-12T08:16:40,243 gat/SegmentList.c:8649:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,243 8649 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,243 | ^~ 2021-07-12T08:16:40,252 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_normalize’: 2021-07-12T08:16:40,258 gat/SegmentList.c:8933:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,258 8933 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,258 | ^ 2021-07-12T08:16:40,266 gat/SegmentList.c:8961:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,267 8961 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,267 | ^~ 2021-07-12T08:16:40,273 gat/SegmentList.c:9030:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,273 9030 | __pyx_t_5 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,273 | ^ 2021-07-12T08:16:40,281 gat/SegmentList.c:9107:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,282 9107 | if (unlikely(!((__pyx_v_insertion_idx < __pyx_v_self->nsegments) != 0))) { 2021-07-12T08:16:40,282 | ^ 2021-07-12T08:16:40,282 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:40,282 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:40,282 | ^ 2021-07-12T08:16:40,289 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_merge’: 2021-07-12T08:16:40,296 gat/SegmentList.c:9449:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,296 9449 | __pyx_t_7 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,296 | ^ 2021-07-12T08:16:40,304 gat/SegmentList.c:9477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,305 9477 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,305 | ^~ 2021-07-12T08:16:40,311 gat/SegmentList.c:9546:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,311 9546 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,311 | ^ 2021-07-12T08:16:40,321 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_check’: 2021-07-12T08:16:40,327 gat/SegmentList.c:9958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,328 9958 | for (__pyx_v_idx = 1; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:40,328 | ^ 2021-07-12T08:16:40,332 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__getInsertionPoint’: 2021-07-12T08:16:40,339 gat/SegmentList.c:10294:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,339 10294 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,339 | ^~ 2021-07-12T08:16:40,353 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlap’: 2021-07-12T08:16:40,360 gat/SegmentList.c:11010:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,360 11010 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,360 | ^~ 2021-07-12T08:16:40,367 gat/SegmentList.c:11078:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,368 11078 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,368 | ^ 2021-07-12T08:16:40,371 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getOverlappingSegments’: 2021-07-12T08:16:40,378 gat/SegmentList.c:11189:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,379 11189 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,379 | ^~ 2021-07-12T08:16:40,386 gat/SegmentList.c:11269:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,386 11269 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,386 | ^ 2021-07-12T08:16:40,420 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlapWithSegments’: 2021-07-12T08:16:40,428 gat/SegmentList.c:12032:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,428 12032 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,428 | ^ 2021-07-12T08:16:40,436 gat/SegmentList.c:12038:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,436 12038 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:40,436 | ^ 2021-07-12T08:16:40,449 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersectionWithSegments’: 2021-07-12T08:16:40,457 gat/SegmentList.c:12580:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,457 12580 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,458 | ^ 2021-07-12T08:16:40,465 gat/SegmentList.c:12586:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,465 12586 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:40,465 | ^ 2021-07-12T08:16:40,477 gat/SegmentList.c:12742:50: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-12T08:16:40,478 12742 | __pyx_t_8 = (__pyx_v_other_segment.start <= __pyx_t_11); 2021-07-12T08:16:40,478 | ^~ 2021-07-12T08:16:40,486 gat/SegmentList.c:12752:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,486 12752 | __pyx_t_8 = (__pyx_t_11 < __pyx_v_other_segment.end); 2021-07-12T08:16:40,486 | ^ 2021-07-12T08:16:40,497 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_36getLengthDistribution’: 2021-07-12T08:16:40,506 gat/SegmentList.c:13254:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,506 13254 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_15; __pyx_v_idx++) { 2021-07-12T08:16:40,507 | ^ 2021-07-12T08:16:40,520 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_truncate’: 2021-07-12T08:16:40,529 gat/SegmentList.c:13543:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,529 13543 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:16:40,530 | ^ 2021-07-12T08:16:40,537 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_subtract’: 2021-07-12T08:16:40,546 gat/SegmentList.c:13929:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,547 13929 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,547 | ^ 2021-07-12T08:16:40,556 gat/SegmentList.c:13935:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,556 13935 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:40,556 | ^ 2021-07-12T08:16:40,569 gat/SegmentList.c:13947:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,569 13947 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-12T08:16:40,569 | ^~ 2021-07-12T08:16:40,577 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_summarize’: 2021-07-12T08:16:40,587 gat/SegmentList.c:14519:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,587 14519 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:40,587 | ^ 2021-07-12T08:16:40,596 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromStart’: 2021-07-12T08:16:40,606 gat/SegmentList.c:14800:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,606 14800 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-12T08:16:40,606 | ^ 2021-07-12T08:16:40,619 gat/SegmentList.c:14915:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,619 14915 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,619 | ^~ 2021-07-12T08:16:40,633 gat/SegmentList.c:15016:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,634 15016 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,634 | ^~ 2021-07-12T08:16:40,648 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromEnd’: 2021-07-12T08:16:40,658 gat/SegmentList.c:15311:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,659 15311 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-12T08:16:40,659 | ^ 2021-07-12T08:16:40,672 gat/SegmentList.c:15426:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,672 15426 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,672 | ^~ 2021-07-12T08:16:40,691 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_filter’: 2021-07-12T08:16:40,701 gat/SegmentList.c:15966:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,702 15966 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,702 | ^ 2021-07-12T08:16:40,712 gat/SegmentList.c:15972:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,712 15972 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:40,712 | ^ 2021-07-12T08:16:40,726 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersect’: 2021-07-12T08:16:40,737 gat/SegmentList.c:16635:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,738 16635 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:16:40,738 | ^ 2021-07-12T08:16:40,749 gat/SegmentList.c:16641:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,749 16641 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:40,749 | ^ 2021-07-12T08:16:40,765 gat/SegmentList.c:16821:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,765 16821 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-12T08:16:40,765 | ^~ 2021-07-12T08:16:40,773 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_extend_segments’: 2021-07-12T08:16:40,784 gat/SegmentList.c:17135:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,785 17135 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:40,785 | ^ 2021-07-12T08:16:40,793 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_expand_segments’: 2021-07-12T08:16:40,805 gat/SegmentList.c:17369:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,805 17369 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_7; __pyx_v_idx++) { 2021-07-12T08:16:40,805 | ^ 2021-07-12T08:16:40,807 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_54shift’: 2021-07-12T08:16:40,819 gat/SegmentList.c:17560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,819 17560 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-12T08:16:40,819 | ^ 2021-07-12T08:16:40,826 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_sum’: 2021-07-12T08:16:40,838 gat/SegmentList.c:17732:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,838 17732 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:40,838 | ^ 2021-07-12T08:16:40,840 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_58largest’: 2021-07-12T08:16:40,852 gat/SegmentList.c:17929:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,852 17929 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_3; __pyx_v_idx++) { 2021-07-12T08:16:40,852 | ^ 2021-07-12T08:16:40,887 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_74asList’: 2021-07-12T08:16:40,900 gat/SegmentList.c:19075:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,900 19075 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:16:40,900 | ^ 2021-07-12T08:16:40,901 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_76asLengths’: 2021-07-12T08:16:40,914 gat/SegmentList.c:19189:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,914 19189 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:16:40,914 | ^ 2021-07-12T08:16:40,925 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_82compare’: 2021-07-12T08:16:40,938 gat/SegmentList.c:19578:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:40,938 19578 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_8; __pyx_v_idx++) { 2021-07-12T08:16:40,938 | ^ 2021-07-12T08:16:42,145 At top level: 2021-07-12T08:16:42,148 gat/SegmentList.c:3559:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpDouble’ defined but not used [-Wunused-function] 2021-07-12T08:16:42,148 3559 | static int __pyx_f_3gat_11SegmentList_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:16:42,148 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:16:42,150 gat/SegmentList.c:3525:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpPosition’ defined but not used [-Wunused-function] 2021-07-12T08:16:42,150 3525 | static int __pyx_f_3gat_11SegmentList_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:16:42,151 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:16:57,622 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:16:57,767 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:16:57,768 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:16:57,768 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:16:57,768 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:16:57,768 | | 2021-07-12T08:16:57,768 | size_t * {aka unsigned int *} 2021-07-12T08:16:57,769 In file included from /usr/include/zlib.h:34, 2021-07-12T08:16:57,769 from utils/gat_utils.c:2: 2021-07-12T08:16:57,770 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:16:57,770 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:16:57,770 | ^~ 2021-07-12T08:16:57,890 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/SegmentList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:16:58,081 building 'gat.PositionList' extension 2021-07-12T08:16:58,081 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/PositionList.c -o build/temp.linux-armv7l-3.9/gat/PositionList.o 2021-07-12T08:16:58,551 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_normalize’: 2021-07-12T08:16:58,553 gat/PositionList.c:5779:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:58,554 5779 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:16:58,554 | ^ 2021-07-12T08:16:58,555 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList__resize’: 2021-07-12T08:16:58,558 gat/PositionList.c:5986:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:58,558 5986 | if (unlikely(!((__pyx_v_npositions >= __pyx_v_self->npositions) != 0))) { 2021-07-12T08:16:58,558 | ^~ 2021-07-12T08:16:58,559 gat/PositionList.c:808:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:16:58,559 808 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:16:58,559 | ^ 2021-07-12T08:16:58,561 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_overlap’: 2021-07-12T08:16:58,564 gat/PositionList.c:6351:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:58,564 6351 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->npositions) != 0); 2021-07-12T08:16:58,565 | ^~ 2021-07-12T08:16:58,569 gat/PositionList.c:6478:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:58,569 6478 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->npositions) != 0); 2021-07-12T08:16:58,569 | ^ 2021-07-12T08:16:58,584 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersectionWithSegments’: 2021-07-12T08:16:58,588 gat/PositionList.c:7014:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:58,588 7014 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-12T08:16:58,588 | ^ 2021-07-12T08:16:58,591 gat/PositionList.c:7020:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:58,591 7020 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:58,592 | ^ 2021-07-12T08:16:58,601 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersect’: 2021-07-12T08:16:58,605 gat/PositionList.c:7554:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:58,605 7554 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-12T08:16:58,605 | ^ 2021-07-12T08:16:58,608 gat/PositionList.c:7560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:58,609 7560 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:16:58,609 | ^ 2021-07-12T08:16:58,613 gat/PositionList.c: In function ‘__pyx_pf_3gat_12PositionList_12PositionList_30asList’: 2021-07-12T08:16:58,617 gat/PositionList.c:7945:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:16:58,617 7945 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:16:58,617 | ^ 2021-07-12T08:16:58,952 At top level: 2021-07-12T08:16:58,953 gat/PositionList.c:1800:18: warning: ‘__pyx_f_3gat_12PositionList_force_bytes’ defined but not used [-Wunused-function] 2021-07-12T08:16:58,953 1800 | static PyObject *__pyx_f_3gat_12PositionList_force_bytes(PyObject *__pyx_v_s, struct __pyx_opt_args_3gat_12PositionList_force_bytes *__pyx_optional_args) { 2021-07-12T08:16:58,953 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:06,378 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:17:06,519 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:17:06,520 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:17:06,520 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:17:06,520 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:06,520 | | 2021-07-12T08:17:06,520 | size_t * {aka unsigned int *} 2021-07-12T08:17:06,521 In file included from /usr/include/zlib.h:34, 2021-07-12T08:17:06,521 from utils/gat_utils.c:2: 2021-07-12T08:17:06,522 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:17:06,522 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:17:06,522 | ^~ 2021-07-12T08:17:06,640 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/PositionList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:17:06,795 building 'gat.Engine' extension 2021-07-12T08:17:06,796 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/Engine.c -o build/temp.linux-armv7l-3.9/gat/Engine.o 2021-07-12T08:17:07,217 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T08:17:07,218 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T08:17:07,218 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T08:17:07,218 from gat/Engine.c:621: 2021-07-12T08:17:07,218 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T08:17:07,219 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T08:17:07,219 | ^~~~~~~ 2021-07-12T08:17:07,351 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_33SegmentListSamplerWithEdgeEffects___init__’: 2021-07-12T08:17:07,354 gat/Engine.c:6588:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:17:07,354 6588 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-12T08:17:07,355 | ^ 2021-07-12T08:17:07,372 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_18SegmentListSampler___init__’: 2021-07-12T08:17:07,376 gat/Engine.c:7553:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:17:07,376 7553 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-12T08:17:07,376 | ^ 2021-07-12T08:17:07,382 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_18SegmentListSampler_sample’: 2021-07-12T08:17:07,386 gat/Engine.c:7769:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-12T08:17:07,386 7769 | __pyx_t_8 = (__pyx_v_segment_index < __pyx_v_self->nsegments); 2021-07-12T08:17:07,387 | ^ 2021-07-12T08:17:07,597 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_12SamplerShift_sample’: 2021-07-12T08:17:07,605 gat/Engine.c:15870:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:17:07,605 15870 | for (__pyx_v_x = 0; __pyx_v_x < __pyx_t_9; __pyx_v_x++) { 2021-07-12T08:17:07,606 | ^ 2021-07-12T08:17:07,920 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_compressSampleIndex’: 2021-07-12T08:17:07,932 gat/Engine.c:24291:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:17:07,933 24291 | __pyx_t_3 = ((__pyx_v_observed_idx < __pyx_v_l) != 0); 2021-07-12T08:17:07,933 | ^ 2021-07-12T08:17:07,956 gat/Engine.c:24450:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:17:07,956 24450 | __pyx_t_2 = ((__pyx_v_x < __pyx_v_l) != 0); 2021-07-12T08:17:07,956 | ^ 2021-07-12T08:17:10,130 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_isSampleSignificantAtPvalue’: 2021-07-12T08:17:10,159 gat/Engine.c:57623:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:17:10,160 57623 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_l) != 0); 2021-07-12T08:17:10,160 | ^ 2021-07-12T08:17:14,987 At top level: 2021-07-12T08:17:15,002 gat/Engine.c:24251:13: warning: ‘__pyx_f_3gat_6Engine_compressSampleIndex’ defined but not used [-Wunused-function] 2021-07-12T08:17:15,002 24251 | static void __pyx_f_3gat_6Engine_compressSampleIndex(__pyx_t_3gat_6Engine_EnrichmentStatistics *__pyx_v_stats) { 2021-07-12T08:17:15,002 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:15,005 gat/Engine.c:5228:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function] 2021-07-12T08:17:15,005 5228 | static int __pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:17:15,005 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:15,008 gat/Engine.c:5191:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegments’ defined but not used [-Wunused-function] 2021-07-12T08:17:15,008 5191 | static int __pyx_f_3gat_6Engine_cmpSegments(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:17:15,009 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:17:52,728 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_24SamplerGlobalPermutation_sample’: 2021-07-12T08:17:52,728 gat/Engine.c:526:40: warning: ‘__pyx_v_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-12T08:17:52,728 526 | #define PyInt_FromLong PyLong_FromLong 2021-07-12T08:17:52,729 | ^~~~~~~~~~~~~~~ 2021-07-12T08:17:52,738 gat/Engine.c:17948:49: note: ‘__pyx_v_start’ was declared here 2021-07-12T08:17:52,738 17948 | __pyx_t_3gat_11SegmentList_PositionDifference __pyx_v_start; 2021-07-12T08:17:52,739 | ^~~~~~~~~~~~~ 2021-07-12T08:18:27,463 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:18:27,620 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:18:27,621 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:18:27,621 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:18:27,621 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:18:27,621 | | 2021-07-12T08:18:27,621 | size_t * {aka unsigned int *} 2021-07-12T08:18:27,623 In file included from /usr/include/zlib.h:34, 2021-07-12T08:18:27,623 from utils/gat_utils.c:2: 2021-07-12T08:18:27,623 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:18:27,623 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:18:27,623 | ^~ 2021-07-12T08:18:27,742 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/Engine.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:18:28,159 running build_scripts 2021-07-12T08:18:28,160 creating build/scripts-3.9 2021-07-12T08:18:28,161 copying and adjusting scripts/gat-run.py -> build/scripts-3.9 2021-07-12T08:18:28,164 copying and adjusting scripts/gat-great.py -> build/scripts-3.9 2021-07-12T08:18:28,167 copying and adjusting scripts/gat-compare.py -> build/scripts-3.9 2021-07-12T08:18:28,169 copying and adjusting scripts/gat-plot.py -> build/scripts-3.9 2021-07-12T08:18:28,171 changing mode of build/scripts-3.9/gat-run.py from 644 to 755 2021-07-12T08:18:28,171 changing mode of build/scripts-3.9/gat-great.py from 644 to 755 2021-07-12T08:18:28,172 changing mode of build/scripts-3.9/gat-compare.py from 644 to 755 2021-07-12T08:18:28,172 changing mode of build/scripts-3.9/gat-plot.py from 644 to 755 2021-07-12T08:18:28,182 installing to build/bdist.linux-armv7l/wheel 2021-07-12T08:18:28,183 running install 2021-07-12T08:18:28,184 running install_lib 2021-07-12T08:18:28,189 creating build/bdist.linux-armv7l 2021-07-12T08:18:28,189 creating build/bdist.linux-armv7l/wheel 2021-07-12T08:18:28,191 creating build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,192 copying build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,206 copying build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,234 copying build/lib.linux-armv7l-3.9/gat/Experiment.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,237 copying build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,338 copying build/lib.linux-armv7l-3.9/gat/IOTools.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,340 copying build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,346 copying build/lib.linux-armv7l-3.9/gat/Bed.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,348 copying build/lib.linux-armv7l-3.9/gat/IO.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,351 copying build/lib.linux-armv7l-3.9/gat/Stats.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,354 copying build/lib.linux-armv7l-3.9/gat/__init__.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:18:28,358 running install_egg_info 2021-07-12T08:18:28,393 running egg_info 2021-07-12T08:18:28,395 writing gat.egg-info/PKG-INFO 2021-07-12T08:18:28,397 writing dependency_links to gat.egg-info/dependency_links.txt 2021-07-12T08:18:28,399 writing requirements to gat.egg-info/requires.txt 2021-07-12T08:18:28,401 writing top-level names to gat.egg-info/top_level.txt 2021-07-12T08:18:28,456 reading manifest file 'gat.egg-info/SOURCES.txt' 2021-07-12T08:18:28,461 reading manifest template 'MANIFEST.in' 2021-07-12T08:18:28,462 warning: no files found matching 'COPYING' 2021-07-12T08:18:28,462 warning: no files found matching 'INSTALL' 2021-07-12T08:18:28,462 warning: no files found matching 'KNOWN_BUGS' 2021-07-12T08:18:28,462 warning: no files found matching 'THANKS' 2021-07-12T08:18:28,471 writing manifest file 'gat.egg-info/SOURCES.txt' 2021-07-12T08:18:28,472 Copying gat.egg-info to build/bdist.linux-armv7l/wheel/gat-1.3.3-py3.9.egg-info 2021-07-12T08:18:28,487 running install_scripts 2021-07-12T08:18:28,512 creating build/bdist.linux-armv7l/wheel/gat-1.3.3.data 2021-07-12T08:18:28,512 creating build/bdist.linux-armv7l/wheel/gat-1.3.3.data/scripts 2021-07-12T08:18:28,514 copying build/scripts-3.9/gat-great.py -> build/bdist.linux-armv7l/wheel/gat-1.3.3.data/scripts 2021-07-12T08:18:28,517 copying build/scripts-3.9/gat-run.py -> build/bdist.linux-armv7l/wheel/gat-1.3.3.data/scripts 2021-07-12T08:18:28,519 copying build/scripts-3.9/gat-compare.py -> build/bdist.linux-armv7l/wheel/gat-1.3.3.data/scripts 2021-07-12T08:18:28,522 copying build/scripts-3.9/gat-plot.py -> build/bdist.linux-armv7l/wheel/gat-1.3.3.data/scripts 2021-07-12T08:18:28,524 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.3.data/scripts/gat-great.py to 755 2021-07-12T08:18:28,524 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.3.data/scripts/gat-run.py to 755 2021-07-12T08:18:28,525 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.3.data/scripts/gat-compare.py to 755 2021-07-12T08:18:28,525 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.3.data/scripts/gat-plot.py to 755 2021-07-12T08:18:28,555 creating build/bdist.linux-armv7l/wheel/gat-1.3.3.dist-info/WHEEL 2021-07-12T08:18:28,559 creating '/tmp/pip-wheel-x7x4giq0/gat-1.3.3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T08:18:28,563 adding 'gat/Bed.py' 2021-07-12T08:18:28,616 adding 'gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:18:29,498 adding 'gat/Engine.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:18:29,540 adding 'gat/Experiment.py' 2021-07-12T08:18:29,543 adding 'gat/IO.py' 2021-07-12T08:18:29,545 adding 'gat/IOTools.py' 2021-07-12T08:18:29,664 adding 'gat/PositionList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:18:29,904 adding 'gat/SegmentList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:18:29,915 adding 'gat/Stats.py' 2021-07-12T08:18:29,919 adding 'gat/__init__.py' 2021-07-12T08:18:29,923 adding 'gat-1.3.3.data/scripts/gat-compare.py' 2021-07-12T08:18:29,925 adding 'gat-1.3.3.data/scripts/gat-great.py' 2021-07-12T08:18:29,927 adding 'gat-1.3.3.data/scripts/gat-plot.py' 2021-07-12T08:18:29,929 adding 'gat-1.3.3.data/scripts/gat-run.py' 2021-07-12T08:18:29,931 adding 'gat-1.3.3.dist-info/METADATA' 2021-07-12T08:18:29,932 adding 'gat-1.3.3.dist-info/WHEEL' 2021-07-12T08:18:29,933 adding 'gat-1.3.3.dist-info/pbr.json' 2021-07-12T08:18:29,933 adding 'gat-1.3.3.dist-info/top_level.txt' 2021-07-12T08:18:29,934 adding 'gat-1.3.3.dist-info/RECORD' 2021-07-12T08:18:29,974 removing build/bdist.linux-armv7l/wheel 2021-07-12T08:18:30,471 Building wheel for gat (setup.py): finished with status 'done' 2021-07-12T08:18:30,508 Created wheel for gat: filename=gat-1.3.3-cp39-cp39-linux_armv7l.whl size=2450758 sha256=e2c9ed1e6dc108919361319a07d501d302d59f536c27058c050e7d00858d1341 2021-07-12T08:18:30,508 Stored in directory: /tmp/pip-ephem-wheel-cache-tv0gznvv/wheels/ee/b5/fb/86aaf385cfa9f2e41754794944f45626e88022c0ee0685ae84 2021-07-12T08:18:30,518 Successfully built gat 2021-07-12T08:18:30,599 Removed build tracker: '/tmp/pip-req-tracker-z4i5gwug'