2021-07-12T08:28:10,821 Created temporary directory: /tmp/pip-ephem-wheel-cache-pvznc9rc 2021-07-12T08:28:10,823 Created temporary directory: /tmp/pip-req-tracker-1ic192hp 2021-07-12T08:28:10,824 Initialized build tracking at /tmp/pip-req-tracker-1ic192hp 2021-07-12T08:28:10,824 Created build tracker: /tmp/pip-req-tracker-1ic192hp 2021-07-12T08:28:10,824 Entered build tracker: /tmp/pip-req-tracker-1ic192hp 2021-07-12T08:28:10,825 Created temporary directory: /tmp/pip-wheel-g_w82893 2021-07-12T08:28:10,856 1 location(s) to search for versions of gat: 2021-07-12T08:28:10,856 * https://pypi.org/simple/gat/ 2021-07-12T08:28:10,856 Fetching project page and analyzing links: https://pypi.org/simple/gat/ 2021-07-12T08:28:10,857 Getting page https://pypi.org/simple/gat/ 2021-07-12T08:28:10,858 Found index url https://pypi.org/simple 2021-07-12T08:28:10,963 Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1 2021-07-12T08:28:10,963 Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2 2021-07-12T08:28:10,963 Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1 2021-07-12T08:28:10,964 Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2 2021-07-12T08:28:10,964 Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1 2021-07-12T08:28:10,965 Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2 2021-07-12T08:28:10,965 Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0 2021-07-12T08:28:10,965 Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1 2021-07-12T08:28:10,965 Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2 2021-07-12T08:28:10,966 Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3 2021-07-12T08:28:10,966 Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4 2021-07-12T08:28:10,966 Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5 2021-07-12T08:28:10,966 Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6 2021-07-12T08:28:10,967 Skipping link: not a file: https://pypi.org/simple/gat/ 2021-07-12T08:28:10,986 Given no hashes to check 1 links for project 'gat': discarding no candidates 2021-07-12T08:28:11,005 Collecting gat==1.3.4 2021-07-12T08:28:11,007 Created temporary directory: /tmp/pip-unpack-qi7tknoz 2021-07-12T08:28:11,192 Downloading gat-1.3.4.tar.gz (88 kB) 2021-07-12T08:28:11,317 Added gat==1.3.4 from https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 to build tracker '/tmp/pip-req-tracker-1ic192hp' 2021-07-12T08:28:11,318 Running setup.py (path:/tmp/pip-wheel-g_w82893/gat_8715261be9ab49749d910ee57c1d3dfe/setup.py) egg_info for package gat 2021-07-12T08:28:11,319 Created temporary directory: /tmp/pip-pip-egg-info-s2ex6yxh 2021-07-12T08:28:11,319 Running command python setup.py egg_info 2021-07-12T08:28:12,648 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-12T08:28:12,649 warnings.warn( 2021-07-12T08:28:12,794 running egg_info 2021-07-12T08:28:12,796 creating /tmp/pip-pip-egg-info-s2ex6yxh/gat.egg-info 2021-07-12T08:28:12,797 writing /tmp/pip-pip-egg-info-s2ex6yxh/gat.egg-info/PKG-INFO 2021-07-12T08:28:12,800 writing dependency_links to /tmp/pip-pip-egg-info-s2ex6yxh/gat.egg-info/dependency_links.txt 2021-07-12T08:28:12,802 writing requirements to /tmp/pip-pip-egg-info-s2ex6yxh/gat.egg-info/requires.txt 2021-07-12T08:28:12,803 writing top-level names to /tmp/pip-pip-egg-info-s2ex6yxh/gat.egg-info/top_level.txt 2021-07-12T08:28:12,804 writing manifest file '/tmp/pip-pip-egg-info-s2ex6yxh/gat.egg-info/SOURCES.txt' 2021-07-12T08:28:12,979 reading manifest file '/tmp/pip-pip-egg-info-s2ex6yxh/gat.egg-info/SOURCES.txt' 2021-07-12T08:28:12,982 reading manifest template 'MANIFEST.in' 2021-07-12T08:28:12,983 warning: no files found matching 'COPYING' 2021-07-12T08:28:12,984 warning: no files found matching 'INSTALL' 2021-07-12T08:28:12,984 warning: no files found matching 'KNOWN_BUGS' 2021-07-12T08:28:12,985 warning: no files found matching 'THANKS' 2021-07-12T08:28:12,992 writing manifest file '/tmp/pip-pip-egg-info-s2ex6yxh/gat.egg-info/SOURCES.txt' 2021-07-12T08:28:13,102 Source in /tmp/pip-wheel-g_w82893/gat_8715261be9ab49749d910ee57c1d3dfe has version 1.3.4, which satisfies requirement gat==1.3.4 from https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 2021-07-12T08:28:13,103 Removed gat==1.3.4 from https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 from build tracker '/tmp/pip-req-tracker-1ic192hp' 2021-07-12T08:28:13,110 Created temporary directory: /tmp/pip-unpack-he7sboc1 2021-07-12T08:28:13,111 Building wheels for collected packages: gat 2021-07-12T08:28:13,115 Created temporary directory: /tmp/pip-wheel-tl0owz81 2021-07-12T08:28:13,115 Building wheel for gat (setup.py): started 2021-07-12T08:28:13,115 Destination directory: /tmp/pip-wheel-tl0owz81 2021-07-12T08:28:13,116 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-g_w82893/gat_8715261be9ab49749d910ee57c1d3dfe/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-g_w82893/gat_8715261be9ab49749d910ee57c1d3dfe/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tl0owz81 2021-07-12T08:28:14,446 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-12T08:28:14,447 warnings.warn( 2021-07-12T08:28:14,604 running bdist_wheel 2021-07-12T08:28:14,609 running build 2021-07-12T08:28:14,610 running build_py 2021-07-12T08:28:14,742 creating build 2021-07-12T08:28:14,742 creating build/lib.linux-armv7l-3.9 2021-07-12T08:28:14,743 creating build/lib.linux-armv7l-3.9/gat 2021-07-12T08:28:14,744 copying gat/Experiment.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:28:14,747 copying gat/IOTools.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:28:14,749 copying gat/Bed.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:28:14,751 copying gat/IO.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:28:14,754 copying gat/Stats.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:28:14,756 copying gat/__init__.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T08:28:14,758 running build_ext 2021-07-12T08:28:14,818 cythoning gat/CoordinateList.pyx to gat/CoordinateList.c 2021-07-12T08:28:15,446 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-g_w82893/gat_8715261be9ab49749d910ee57c1d3dfe/gat/CoordinateList.pxd 2021-07-12T08:28:15,446 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:28:15,721 cythoning gat/SegmentList.pyx to gat/SegmentList.c 2021-07-12T08:28:15,727 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-g_w82893/gat_8715261be9ab49749d910ee57c1d3dfe/gat/SegmentList.pxd 2021-07-12T08:28:15,727 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:28:21,839 cythoning gat/PositionList.pyx to gat/PositionList.c 2021-07-12T08:28:21,845 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-g_w82893/gat_8715261be9ab49749d910ee57c1d3dfe/gat/PositionList.pxd 2021-07-12T08:28:21,845 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:28:24,734 cythoning gat/Engine.pyx to gat/Engine.c 2021-07-12T08:28:24,740 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-g_w82893/gat_8715261be9ab49749d910ee57c1d3dfe/gat/Engine.pxd 2021-07-12T08:28:24,740 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T08:28:34,184 building 'gat.CoordinateList' extension 2021-07-12T08:28:34,185 creating build/temp.linux-armv7l-3.9 2021-07-12T08:28:34,185 creating build/temp.linux-armv7l-3.9/gat 2021-07-12T08:28:34,186 creating build/temp.linux-armv7l-3.9/utils 2021-07-12T08:28:34,187 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/CoordinateList.c -o build/temp.linux-armv7l-3.9/gat/CoordinateList.o 2021-07-12T08:28:37,031 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:28:37,170 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:28:37,170 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:28:37,170 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:28:37,170 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:28:37,171 | | 2021-07-12T08:28:37,171 | size_t * {aka unsigned int *} 2021-07-12T08:28:37,171 In file included from /usr/include/zlib.h:34, 2021-07-12T08:28:37,172 from utils/gat_utils.c:2: 2021-07-12T08:28:37,172 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:28:37,172 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:28:37,173 | ^~ 2021-07-12T08:28:37,287 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/CoordinateList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:28:37,422 building 'gat.SegmentList' extension 2021-07-12T08:28:37,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/SegmentList.c -o build/temp.linux-armv7l-3.9/gat/SegmentList.o 2021-07-12T08:28:37,842 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T08:28:37,842 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T08:28:37,843 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T08:28:37,843 from gat/SegmentList.c:623: 2021-07-12T08:28:37,843 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T08:28:37,843 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T08:28:37,843 | ^~~~~~~ 2021-07-12T08:28:37,973 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim_ends’: 2021-07-12T08:28:37,977 gat/SegmentList.c:7383:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:28:37,977 7383 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-12T08:28:37,977 | ^ 2021-07-12T08:28:37,977 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:28:37,978 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:28:37,978 | ^ 2021-07-12T08:28:37,982 gat/SegmentList.c:7433:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:37,982 7433 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:37,983 | ^~ 2021-07-12T08:28:37,988 gat/SegmentList.c:7568:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:37,988 7568 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:37,988 | ^~ 2021-07-12T08:28:37,996 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__resize’: 2021-07-12T08:28:38,000 gat/SegmentList.c:7887:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,000 7887 | if (unlikely(!((__pyx_v_nsegments >= __pyx_v_self->nsegments) != 0))) { 2021-07-12T08:28:38,000 | ^~ 2021-07-12T08:28:38,000 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:28:38,000 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:28:38,000 | ^ 2021-07-12T08:28:38,002 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_insert’: 2021-07-12T08:28:38,007 gat/SegmentList.c:8135:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-12T08:28:38,007 8135 | if (((__pyx_t_4 > __pyx_t_5) != 0)) { 2021-07-12T08:28:38,007 | ^ 2021-07-12T08:28:38,013 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim’: 2021-07-12T08:28:38,017 gat/SegmentList.c:8396:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:28:38,018 8396 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-12T08:28:38,018 | ^ 2021-07-12T08:28:38,018 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:28:38,018 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:28:38,018 | ^ 2021-07-12T08:28:38,023 gat/SegmentList.c:8464:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,024 8464 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,024 | ^~ 2021-07-12T08:28:38,029 gat/SegmentList.c:8541:31: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,030 8541 | __pyx_t_9 = ((__pyx_v_p == (__pyx_v_self->segments[__pyx_v_idx]).start) != 0); 2021-07-12T08:28:38,030 | ^~ 2021-07-12T08:28:38,034 gat/SegmentList.c:8649:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,034 8649 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,035 | ^~ 2021-07-12T08:28:38,043 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_normalize’: 2021-07-12T08:28:38,047 gat/SegmentList.c:8933:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,047 8933 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,047 | ^ 2021-07-12T08:28:38,053 gat/SegmentList.c:8961:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,053 8961 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,053 | ^~ 2021-07-12T08:28:38,058 gat/SegmentList.c:9030:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,058 9030 | __pyx_t_5 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,058 | ^ 2021-07-12T08:28:38,064 gat/SegmentList.c:9107:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,065 9107 | if (unlikely(!((__pyx_v_insertion_idx < __pyx_v_self->nsegments) != 0))) { 2021-07-12T08:28:38,065 | ^ 2021-07-12T08:28:38,065 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:28:38,065 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:28:38,065 | ^ 2021-07-12T08:28:38,072 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_merge’: 2021-07-12T08:28:38,076 gat/SegmentList.c:9449:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,076 9449 | __pyx_t_7 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,076 | ^ 2021-07-12T08:28:38,083 gat/SegmentList.c:9477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,083 9477 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,083 | ^~ 2021-07-12T08:28:38,088 gat/SegmentList.c:9546:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,088 9546 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,088 | ^ 2021-07-12T08:28:38,096 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_check’: 2021-07-12T08:28:38,101 gat/SegmentList.c:9958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,101 9958 | for (__pyx_v_idx = 1; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:28:38,101 | ^ 2021-07-12T08:28:38,106 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__getInsertionPoint’: 2021-07-12T08:28:38,111 gat/SegmentList.c:10294:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,111 10294 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,111 | ^~ 2021-07-12T08:28:38,124 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlap’: 2021-07-12T08:28:38,130 gat/SegmentList.c:11010:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,130 11010 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,130 | ^~ 2021-07-12T08:28:38,135 gat/SegmentList.c:11078:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,135 11078 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,136 | ^ 2021-07-12T08:28:38,138 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getOverlappingSegments’: 2021-07-12T08:28:38,144 gat/SegmentList.c:11189:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,144 11189 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,144 | ^~ 2021-07-12T08:28:38,150 gat/SegmentList.c:11269:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,150 11269 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,150 | ^ 2021-07-12T08:28:38,179 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlapWithSegments’: 2021-07-12T08:28:38,185 gat/SegmentList.c:12032:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,185 12032 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,185 | ^ 2021-07-12T08:28:38,191 gat/SegmentList.c:12038:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,191 12038 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:28:38,191 | ^ 2021-07-12T08:28:38,202 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersectionWithSegments’: 2021-07-12T08:28:38,208 gat/SegmentList.c:12580:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,208 12580 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,208 | ^ 2021-07-12T08:28:38,214 gat/SegmentList.c:12586:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,214 12586 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:28:38,214 | ^ 2021-07-12T08:28:38,223 gat/SegmentList.c:12742:50: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-12T08:28:38,223 12742 | __pyx_t_8 = (__pyx_v_other_segment.start <= __pyx_t_11); 2021-07-12T08:28:38,224 | ^~ 2021-07-12T08:28:38,229 gat/SegmentList.c:12752:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,230 12752 | __pyx_t_8 = (__pyx_t_11 < __pyx_v_other_segment.end); 2021-07-12T08:28:38,230 | ^ 2021-07-12T08:28:38,241 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_36getLengthDistribution’: 2021-07-12T08:28:38,248 gat/SegmentList.c:13254:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,248 13254 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_15; __pyx_v_idx++) { 2021-07-12T08:28:38,248 | ^ 2021-07-12T08:28:38,260 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_truncate’: 2021-07-12T08:28:38,266 gat/SegmentList.c:13543:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,267 13543 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:28:38,267 | ^ 2021-07-12T08:28:38,274 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_subtract’: 2021-07-12T08:28:38,280 gat/SegmentList.c:13929:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,281 13929 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,281 | ^ 2021-07-12T08:28:38,287 gat/SegmentList.c:13935:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,288 13935 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:28:38,288 | ^ 2021-07-12T08:28:38,297 gat/SegmentList.c:13947:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,297 13947 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-12T08:28:38,297 | ^~ 2021-07-12T08:28:38,304 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_summarize’: 2021-07-12T08:28:38,311 gat/SegmentList.c:14519:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,312 14519 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:28:38,312 | ^ 2021-07-12T08:28:38,320 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromStart’: 2021-07-12T08:28:38,327 gat/SegmentList.c:14800:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,327 14800 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-12T08:28:38,328 | ^ 2021-07-12T08:28:38,338 gat/SegmentList.c:14915:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,338 14915 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,338 | ^~ 2021-07-12T08:28:38,349 gat/SegmentList.c:15016:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,349 15016 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,349 | ^~ 2021-07-12T08:28:38,362 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromEnd’: 2021-07-12T08:28:38,369 gat/SegmentList.c:15311:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,369 15311 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-12T08:28:38,370 | ^ 2021-07-12T08:28:38,380 gat/SegmentList.c:15426:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,380 15426 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,380 | ^~ 2021-07-12T08:28:38,396 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_filter’: 2021-07-12T08:28:38,404 gat/SegmentList.c:15966:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,404 15966 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,404 | ^ 2021-07-12T08:28:38,412 gat/SegmentList.c:15972:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,412 15972 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:28:38,412 | ^ 2021-07-12T08:28:38,424 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersect’: 2021-07-12T08:28:38,432 gat/SegmentList.c:16635:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,432 16635 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T08:28:38,432 | ^ 2021-07-12T08:28:38,440 gat/SegmentList.c:16641:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,440 16641 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:28:38,441 | ^ 2021-07-12T08:28:38,453 gat/SegmentList.c:16821:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,453 16821 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-12T08:28:38,453 | ^~ 2021-07-12T08:28:38,460 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_extend_segments’: 2021-07-12T08:28:38,468 gat/SegmentList.c:17135:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,469 17135 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:28:38,469 | ^ 2021-07-12T08:28:38,476 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_expand_segments’: 2021-07-12T08:28:38,484 gat/SegmentList.c:17369:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,485 17369 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_7; __pyx_v_idx++) { 2021-07-12T08:28:38,485 | ^ 2021-07-12T08:28:38,487 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_54shift’: 2021-07-12T08:28:38,495 gat/SegmentList.c:17560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,496 17560 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-12T08:28:38,496 | ^ 2021-07-12T08:28:38,502 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_sum’: 2021-07-12T08:28:38,510 gat/SegmentList.c:17732:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,511 17732 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:28:38,511 | ^ 2021-07-12T08:28:38,512 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_58largest’: 2021-07-12T08:28:38,521 gat/SegmentList.c:17929:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,521 17929 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_3; __pyx_v_idx++) { 2021-07-12T08:28:38,522 | ^ 2021-07-12T08:28:38,552 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_74asList’: 2021-07-12T08:28:38,561 gat/SegmentList.c:19075:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,561 19075 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:28:38,561 | ^ 2021-07-12T08:28:38,563 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_76asLengths’: 2021-07-12T08:28:38,572 gat/SegmentList.c:19189:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,573 19189 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:28:38,573 | ^ 2021-07-12T08:28:38,583 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_82compare’: 2021-07-12T08:28:38,592 gat/SegmentList.c:19578:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:38,593 19578 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_8; __pyx_v_idx++) { 2021-07-12T08:28:38,593 | ^ 2021-07-12T08:28:39,577 At top level: 2021-07-12T08:28:39,578 gat/SegmentList.c:3559:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpDouble’ defined but not used [-Wunused-function] 2021-07-12T08:28:39,579 3559 | static int __pyx_f_3gat_11SegmentList_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:28:39,579 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:28:39,580 gat/SegmentList.c:3525:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpPosition’ defined but not used [-Wunused-function] 2021-07-12T08:28:39,581 3525 | static int __pyx_f_3gat_11SegmentList_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:28:39,581 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:28:55,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:28:55,208 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:28:55,208 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:28:55,209 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:28:55,209 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:28:55,209 | | 2021-07-12T08:28:55,209 | size_t * {aka unsigned int *} 2021-07-12T08:28:55,210 In file included from /usr/include/zlib.h:34, 2021-07-12T08:28:55,211 from utils/gat_utils.c:2: 2021-07-12T08:28:55,211 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:28:55,211 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:28:55,211 | ^~ 2021-07-12T08:28:55,330 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/SegmentList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:28:55,524 building 'gat.PositionList' extension 2021-07-12T08:28:55,525 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/PositionList.c -o build/temp.linux-armv7l-3.9/gat/PositionList.o 2021-07-12T08:28:55,999 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_normalize’: 2021-07-12T08:28:56,002 gat/PositionList.c:5779:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:56,002 5779 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T08:28:56,002 | ^ 2021-07-12T08:28:56,004 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList__resize’: 2021-07-12T08:28:56,007 gat/PositionList.c:5986:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:56,007 5986 | if (unlikely(!((__pyx_v_npositions >= __pyx_v_self->npositions) != 0))) { 2021-07-12T08:28:56,008 | ^~ 2021-07-12T08:28:56,008 gat/PositionList.c:808:43: note: in definition of macro ‘unlikely’ 2021-07-12T08:28:56,008 808 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T08:28:56,008 | ^ 2021-07-12T08:28:56,011 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_overlap’: 2021-07-12T08:28:56,015 gat/PositionList.c:6351:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:56,015 6351 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->npositions) != 0); 2021-07-12T08:28:56,015 | ^~ 2021-07-12T08:28:56,020 gat/PositionList.c:6478:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:56,020 6478 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->npositions) != 0); 2021-07-12T08:28:56,021 | ^ 2021-07-12T08:28:56,036 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersectionWithSegments’: 2021-07-12T08:28:56,040 gat/PositionList.c:7014:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:56,040 7014 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-12T08:28:56,040 | ^ 2021-07-12T08:28:56,044 gat/PositionList.c:7020:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:56,044 7020 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:28:56,044 | ^ 2021-07-12T08:28:56,054 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersect’: 2021-07-12T08:28:56,058 gat/PositionList.c:7554:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:56,059 7554 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-12T08:28:56,059 | ^ 2021-07-12T08:28:56,063 gat/PositionList.c:7560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:56,063 7560 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T08:28:56,063 | ^ 2021-07-12T08:28:56,068 gat/PositionList.c: In function ‘__pyx_pf_3gat_12PositionList_12PositionList_30asList’: 2021-07-12T08:28:56,072 gat/PositionList.c:7945:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:28:56,073 7945 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T08:28:56,073 | ^ 2021-07-12T08:28:56,409 At top level: 2021-07-12T08:28:56,410 gat/PositionList.c:1800:18: warning: ‘__pyx_f_3gat_12PositionList_force_bytes’ defined but not used [-Wunused-function] 2021-07-12T08:28:56,410 1800 | static PyObject *__pyx_f_3gat_12PositionList_force_bytes(PyObject *__pyx_v_s, struct __pyx_opt_args_3gat_12PositionList_force_bytes *__pyx_optional_args) { 2021-07-12T08:28:56,410 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:29:03,815 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:29:03,959 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:29:03,960 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:29:03,960 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:29:03,960 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:29:03,961 | | 2021-07-12T08:29:03,961 | size_t * {aka unsigned int *} 2021-07-12T08:29:03,962 In file included from /usr/include/zlib.h:34, 2021-07-12T08:29:03,962 from utils/gat_utils.c:2: 2021-07-12T08:29:03,962 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:29:03,962 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:29:03,963 | ^~ 2021-07-12T08:29:04,079 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/PositionList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:29:04,235 building 'gat.Engine' extension 2021-07-12T08:29:04,236 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/Engine.c -o build/temp.linux-armv7l-3.9/gat/Engine.o 2021-07-12T08:29:04,650 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T08:29:04,651 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T08:29:04,651 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T08:29:04,651 from gat/Engine.c:621: 2021-07-12T08:29:04,651 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T08:29:04,651 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T08:29:04,651 | ^~~~~~~ 2021-07-12T08:29:04,784 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_33SegmentListSamplerWithEdgeEffects___init__’: 2021-07-12T08:29:04,788 gat/Engine.c:6588:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:29:04,788 6588 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-12T08:29:04,788 | ^ 2021-07-12T08:29:04,806 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_18SegmentListSampler___init__’: 2021-07-12T08:29:04,810 gat/Engine.c:7553:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:29:04,811 7553 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-12T08:29:04,811 | ^ 2021-07-12T08:29:04,817 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_18SegmentListSampler_sample’: 2021-07-12T08:29:04,822 gat/Engine.c:7769:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-12T08:29:04,822 7769 | __pyx_t_8 = (__pyx_v_segment_index < __pyx_v_self->nsegments); 2021-07-12T08:29:04,822 | ^ 2021-07-12T08:29:05,032 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_12SamplerShift_sample’: 2021-07-12T08:29:05,040 gat/Engine.c:15870:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T08:29:05,040 15870 | for (__pyx_v_x = 0; __pyx_v_x < __pyx_t_9; __pyx_v_x++) { 2021-07-12T08:29:05,040 | ^ 2021-07-12T08:29:05,353 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_compressSampleIndex’: 2021-07-12T08:29:05,366 gat/Engine.c:24291:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:29:05,367 24291 | __pyx_t_3 = ((__pyx_v_observed_idx < __pyx_v_l) != 0); 2021-07-12T08:29:05,367 | ^ 2021-07-12T08:29:05,390 gat/Engine.c:24450:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:29:05,391 24450 | __pyx_t_2 = ((__pyx_v_x < __pyx_v_l) != 0); 2021-07-12T08:29:05,391 | ^ 2021-07-12T08:29:07,552 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_isSampleSignificantAtPvalue’: 2021-07-12T08:29:07,582 gat/Engine.c:57623:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T08:29:07,583 57623 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_l) != 0); 2021-07-12T08:29:07,583 | ^ 2021-07-12T08:29:12,388 At top level: 2021-07-12T08:29:12,403 gat/Engine.c:24251:13: warning: ‘__pyx_f_3gat_6Engine_compressSampleIndex’ defined but not used [-Wunused-function] 2021-07-12T08:29:12,404 24251 | static void __pyx_f_3gat_6Engine_compressSampleIndex(__pyx_t_3gat_6Engine_EnrichmentStatistics *__pyx_v_stats) { 2021-07-12T08:29:12,404 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:29:12,407 gat/Engine.c:5228:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function] 2021-07-12T08:29:12,407 5228 | static int __pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:29:12,408 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:29:12,411 gat/Engine.c:5191:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegments’ defined but not used [-Wunused-function] 2021-07-12T08:29:12,411 5191 | static int __pyx_f_3gat_6Engine_cmpSegments(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T08:29:12,411 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T08:29:50,047 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_24SamplerGlobalPermutation_sample’: 2021-07-12T08:29:50,048 gat/Engine.c:526:40: warning: ‘__pyx_v_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-12T08:29:50,048 526 | #define PyInt_FromLong PyLong_FromLong 2021-07-12T08:29:50,048 | ^~~~~~~~~~~~~~~ 2021-07-12T08:29:50,058 gat/Engine.c:17948:49: note: ‘__pyx_v_start’ was declared here 2021-07-12T08:29:50,058 17948 | __pyx_t_3gat_11SegmentList_PositionDifference __pyx_v_start; 2021-07-12T08:29:50,058 | ^~~~~~~~~~~~~ 2021-07-12T08:30:24,850 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T08:30:25,015 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T08:30:25,015 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T08:30:25,015 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T08:30:25,015 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T08:30:25,016 | | 2021-07-12T08:30:25,016 | size_t * {aka unsigned int *} 2021-07-12T08:30:25,016 In file included from /usr/include/zlib.h:34, 2021-07-12T08:30:25,017 from utils/gat_utils.c:2: 2021-07-12T08:30:25,017 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T08:30:25,017 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T08:30:25,018 | ^~ 2021-07-12T08:30:25,134 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/Engine.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so 2021-07-12T08:30:25,531 running build_scripts 2021-07-12T08:30:25,532 creating build/scripts-3.9 2021-07-12T08:30:25,533 copying and adjusting scripts/gat-run.py -> build/scripts-3.9 2021-07-12T08:30:25,535 copying and adjusting scripts/gat-great.py -> build/scripts-3.9 2021-07-12T08:30:25,538 copying and adjusting scripts/gat-compare.py -> build/scripts-3.9 2021-07-12T08:30:25,540 copying and adjusting scripts/gat-plot.py -> build/scripts-3.9 2021-07-12T08:30:25,542 changing mode of build/scripts-3.9/gat-run.py from 644 to 755 2021-07-12T08:30:25,542 changing mode of build/scripts-3.9/gat-great.py from 644 to 755 2021-07-12T08:30:25,542 changing mode of build/scripts-3.9/gat-compare.py from 644 to 755 2021-07-12T08:30:25,543 changing mode of build/scripts-3.9/gat-plot.py from 644 to 755 2021-07-12T08:30:25,552 installing to build/bdist.linux-armv7l/wheel 2021-07-12T08:30:25,552 running install 2021-07-12T08:30:25,554 running install_lib 2021-07-12T08:30:25,558 creating build/bdist.linux-armv7l 2021-07-12T08:30:25,558 creating build/bdist.linux-armv7l/wheel 2021-07-12T08:30:25,560 creating build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,561 copying build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,576 copying build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,604 copying build/lib.linux-armv7l-3.9/gat/Experiment.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,607 copying build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,711 copying build/lib.linux-armv7l-3.9/gat/IOTools.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,714 copying build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,722 copying build/lib.linux-armv7l-3.9/gat/Bed.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,725 copying build/lib.linux-armv7l-3.9/gat/IO.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,728 copying build/lib.linux-armv7l-3.9/gat/Stats.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,730 copying build/lib.linux-armv7l-3.9/gat/__init__.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T08:30:25,734 running install_egg_info 2021-07-12T08:30:25,765 running egg_info 2021-07-12T08:30:25,766 writing gat.egg-info/PKG-INFO 2021-07-12T08:30:25,768 writing dependency_links to gat.egg-info/dependency_links.txt 2021-07-12T08:30:25,770 writing requirements to gat.egg-info/requires.txt 2021-07-12T08:30:25,771 writing top-level names to gat.egg-info/top_level.txt 2021-07-12T08:30:25,820 reading manifest file 'gat.egg-info/SOURCES.txt' 2021-07-12T08:30:25,825 reading manifest template 'MANIFEST.in' 2021-07-12T08:30:25,826 warning: no files found matching 'COPYING' 2021-07-12T08:30:25,826 warning: no files found matching 'INSTALL' 2021-07-12T08:30:25,827 warning: no files found matching 'KNOWN_BUGS' 2021-07-12T08:30:25,827 warning: no files found matching 'THANKS' 2021-07-12T08:30:25,835 writing manifest file 'gat.egg-info/SOURCES.txt' 2021-07-12T08:30:25,837 Copying gat.egg-info to build/bdist.linux-armv7l/wheel/gat-1.3.4-py3.9.egg-info 2021-07-12T08:30:25,851 running install_scripts 2021-07-12T08:30:25,875 creating build/bdist.linux-armv7l/wheel/gat-1.3.4.data 2021-07-12T08:30:25,875 creating build/bdist.linux-armv7l/wheel/gat-1.3.4.data/scripts 2021-07-12T08:30:25,876 copying build/scripts-3.9/gat-great.py -> build/bdist.linux-armv7l/wheel/gat-1.3.4.data/scripts 2021-07-12T08:30:25,879 copying build/scripts-3.9/gat-run.py -> build/bdist.linux-armv7l/wheel/gat-1.3.4.data/scripts 2021-07-12T08:30:25,882 copying build/scripts-3.9/gat-compare.py -> build/bdist.linux-armv7l/wheel/gat-1.3.4.data/scripts 2021-07-12T08:30:25,884 copying build/scripts-3.9/gat-plot.py -> build/bdist.linux-armv7l/wheel/gat-1.3.4.data/scripts 2021-07-12T08:30:25,886 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.4.data/scripts/gat-great.py to 755 2021-07-12T08:30:25,886 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.4.data/scripts/gat-run.py to 755 2021-07-12T08:30:25,886 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.4.data/scripts/gat-compare.py to 755 2021-07-12T08:30:25,886 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.4.data/scripts/gat-plot.py to 755 2021-07-12T08:30:25,906 creating build/bdist.linux-armv7l/wheel/gat-1.3.4.dist-info/WHEEL 2021-07-12T08:30:25,909 creating '/tmp/pip-wheel-tl0owz81/gat-1.3.4-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T08:30:25,913 adding 'gat/Bed.py' 2021-07-12T08:30:25,962 adding 'gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:30:26,858 adding 'gat/Engine.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:30:26,900 adding 'gat/Experiment.py' 2021-07-12T08:30:26,903 adding 'gat/IO.py' 2021-07-12T08:30:26,905 adding 'gat/IOTools.py' 2021-07-12T08:30:27,022 adding 'gat/PositionList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:30:27,265 adding 'gat/SegmentList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T08:30:27,276 adding 'gat/Stats.py' 2021-07-12T08:30:27,281 adding 'gat/__init__.py' 2021-07-12T08:30:27,284 adding 'gat-1.3.4.data/scripts/gat-compare.py' 2021-07-12T08:30:27,286 adding 'gat-1.3.4.data/scripts/gat-great.py' 2021-07-12T08:30:27,288 adding 'gat-1.3.4.data/scripts/gat-plot.py' 2021-07-12T08:30:27,290 adding 'gat-1.3.4.data/scripts/gat-run.py' 2021-07-12T08:30:27,292 adding 'gat-1.3.4.dist-info/METADATA' 2021-07-12T08:30:27,293 adding 'gat-1.3.4.dist-info/WHEEL' 2021-07-12T08:30:27,294 adding 'gat-1.3.4.dist-info/top_level.txt' 2021-07-12T08:30:27,295 adding 'gat-1.3.4.dist-info/RECORD' 2021-07-12T08:30:27,346 removing build/bdist.linux-armv7l/wheel 2021-07-12T08:30:27,838 Building wheel for gat (setup.py): finished with status 'done' 2021-07-12T08:30:27,875 Created wheel for gat: filename=gat-1.3.4-cp39-cp39-linux_armv7l.whl size=2450562 sha256=3cf54ef406b64578c17acf4ea56f702752adf961eca5a27f9972273e75459484 2021-07-12T08:30:27,875 Stored in directory: /tmp/pip-ephem-wheel-cache-pvznc9rc/wheels/a0/7d/b4/61ede89f93fa69dff8f5d1e1e07399aa44c04a78397d55244b 2021-07-12T08:30:27,885 Successfully built gat 2021-07-12T08:30:27,968 Removed build tracker: '/tmp/pip-req-tracker-1ic192hp'