2021-07-12T09:37:50,298 Created temporary directory: /tmp/pip-ephem-wheel-cache-dljvgf98
2021-07-12T09:37:50,301 Created temporary directory: /tmp/pip-req-tracker-20yb6zfl
2021-07-12T09:37:50,301 Initialized build tracking at /tmp/pip-req-tracker-20yb6zfl
2021-07-12T09:37:50,302 Created build tracker: /tmp/pip-req-tracker-20yb6zfl
2021-07-12T09:37:50,302 Entered build tracker: /tmp/pip-req-tracker-20yb6zfl
2021-07-12T09:37:50,303 Created temporary directory: /tmp/pip-wheel-cpemm6f1
2021-07-12T09:37:50,340 1 location(s) to search for versions of mitre:
2021-07-12T09:37:50,340 * https://pypi.org/simple/mitre/
2021-07-12T09:37:50,340 Fetching project page and analyzing links: https://pypi.org/simple/mitre/
2021-07-12T09:37:50,341 Getting page https://pypi.org/simple/mitre/
2021-07-12T09:37:50,344 Found index url https://pypi.org/simple
2021-07-12T09:37:50,473   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/59/f6/233a0adc07eaf97d28545b7f42f8c3bd3a6cd6f98179e644e75257ea869b/mitre-0.9b1-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=6b5a7e496c46a53d5e2b2067f67b1f1d94075b525acea979a32cff11b15542d3 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,473   Found link https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz#sha256=771589e92e4267a4e551dfd104be5d2cc2c6e5d56634bd29fefe937f976ccdaf (from https://pypi.org/simple/mitre/), version: 0.9b1
2021-07-12T09:37:50,474   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/47/14/38f5abf9aabdc12a77be89fbd69618cc833a9e9d4c2c81ba7b3d66f2babd/mitre-0.9b2-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=c58e141cf4c9e2f2755eaa54eb80a7fe8cceef243d154cb741688ac8d23c6116 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,474   Found link https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz#sha256=0bbb16e6d42ffb37620fd31ae547cf776d9e92aba926ff1c46eef6cca76f0fe1 (from https://pypi.org/simple/mitre/), version: 0.9b2
2021-07-12T09:37:50,475   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/07/a1/111c00ce0ab5508eb79f5375ca0fee326ce76b5800a53995018d7b80fb47/mitre-0.9b3-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3813a9da8f362e7918261410bd345fc19d2c0a3627b40fdb4b2d8ef2724e5579 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,475   Found link https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz#sha256=cbc0aaea05c289e3a56abf0c45506f663b7616e0138d28cd0725a1046ab61828 (from https://pypi.org/simple/mitre/), version: 0.9b3
2021-07-12T09:37:50,476   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6a/24/8151e74639efbec4abc53d046b077bc30a8030f0a4ed05f341896d08310f/mitre-0.9b4-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=b2ec818db040005ea1253503e2c6f9597d4cbc0538c45da6c73ef5d074ee562c (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,476   Found link https://files.pythonhosted.org/packages/5a/b9/ef6ba6d02cb43873415935aac15ae0af557bc19c68670a4df756a2d19cc4/mitre-0.9b4.tar.gz#sha256=b1885e1c527afaf8f0b9d3bf8b92b84343db20919b61271665acea7f162c9871 (from https://pypi.org/simple/mitre/), version: 0.9b4
2021-07-12T09:37:50,477   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/68/39/26cccdca887c89b2e366625711f0447880aa99e424e35fa0767f5f5e6005/mitre-0.9b5-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3e6023c4a9973a6d88196756aa0ebc54635513d0def0fdb91dd7a525b61eaf65 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,477   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/15/1344c018f16ea96f6563f2f783d516efb34ddc67d8b50e95ca55da75e7ce/mitre-0.9b5-py2.7-linux-x86_64.egg#sha256=71140d6aeedd1cea5694511d6b866689d44a247801853aa33a33d5be8f45bd0c (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,478   Found link https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz#sha256=80cc8624b88e26c34e2ff8023ee0eeb569fe731eb4df28354387dd8f46aca155 (from https://pypi.org/simple/mitre/), version: 0.9b5
2021-07-12T09:37:50,478   Found link https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz#sha256=358fbd057f95068b2f6372af424a71fee16d6a5eb780201de6958bc2ec201dcf (from https://pypi.org/simple/mitre/), version: 1.0b1
2021-07-12T09:37:50,479 Skipping link: not a file: https://pypi.org/simple/mitre/
2021-07-12T09:37:50,480 Given no hashes to check 1 links for project 'mitre': discarding no candidates
2021-07-12T09:37:50,502 Collecting mitre==0.9b2
2021-07-12T09:37:50,503   Created temporary directory: /tmp/pip-unpack-c3h1yapq
2021-07-12T09:37:52,706   Downloading mitre-0.9b2.tar.gz (9.5 MB)
2021-07-12T09:37:57,927   Added mitre==0.9b2 from https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz#sha256=0bbb16e6d42ffb37620fd31ae547cf776d9e92aba926ff1c46eef6cca76f0fe1 to build tracker '/tmp/pip-req-tracker-20yb6zfl'
2021-07-12T09:37:57,929     Running setup.py (path:/tmp/pip-wheel-cpemm6f1/mitre_67a02a07f1bf4328888aa1f84afb18f8/setup.py) egg_info for package mitre
2021-07-12T09:37:57,930     Created temporary directory: /tmp/pip-pip-egg-info-gm42qzko
2021-07-12T09:37:57,930     Running command python setup.py egg_info
2021-07-12T09:37:59,013     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-12T09:37:59,013       warnings.warn(
2021-07-12T09:37:59,150     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.9beta2' to '0.9b2'
2021-07-12T09:37:59,150       warnings.warn(tmpl.format(**locals()))
2021-07-12T09:37:59,187     running egg_info
2021-07-12T09:37:59,189     creating /tmp/pip-pip-egg-info-gm42qzko/mitre.egg-info
2021-07-12T09:37:59,190     writing /tmp/pip-pip-egg-info-gm42qzko/mitre.egg-info/PKG-INFO
2021-07-12T09:37:59,194     writing dependency_links to /tmp/pip-pip-egg-info-gm42qzko/mitre.egg-info/dependency_links.txt
2021-07-12T09:37:59,195     writing entry points to /tmp/pip-pip-egg-info-gm42qzko/mitre.egg-info/entry_points.txt
2021-07-12T09:37:59,197     writing requirements to /tmp/pip-pip-egg-info-gm42qzko/mitre.egg-info/requires.txt
2021-07-12T09:37:59,198     writing top-level names to /tmp/pip-pip-egg-info-gm42qzko/mitre.egg-info/top_level.txt
2021-07-12T09:37:59,200     writing manifest file '/tmp/pip-pip-egg-info-gm42qzko/mitre.egg-info/SOURCES.txt'
2021-07-12T09:37:59,386     reading manifest file '/tmp/pip-pip-egg-info-gm42qzko/mitre.egg-info/SOURCES.txt'
2021-07-12T09:37:59,388     reading manifest template 'MANIFEST.in'
2021-07-12T09:37:59,418     adding license file 'LICENSE.txt'
2021-07-12T09:37:59,424     writing manifest file '/tmp/pip-pip-egg-info-gm42qzko/mitre.egg-info/SOURCES.txt'
2021-07-12T09:37:59,521   Source in /tmp/pip-wheel-cpemm6f1/mitre_67a02a07f1bf4328888aa1f84afb18f8 has version 0.9b2, which satisfies requirement mitre==0.9b2 from https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz#sha256=0bbb16e6d42ffb37620fd31ae547cf776d9e92aba926ff1c46eef6cca76f0fe1
2021-07-12T09:37:59,522   Removed mitre==0.9b2 from https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz#sha256=0bbb16e6d42ffb37620fd31ae547cf776d9e92aba926ff1c46eef6cca76f0fe1 from build tracker '/tmp/pip-req-tracker-20yb6zfl'
2021-07-12T09:37:59,528 Created temporary directory: /tmp/pip-unpack-oadeqd00
2021-07-12T09:37:59,529 Building wheels for collected packages: mitre
2021-07-12T09:37:59,535   Created temporary directory: /tmp/pip-wheel-_z07kyqy
2021-07-12T09:37:59,536   Building wheel for mitre (setup.py): started
2021-07-12T09:37:59,536   Destination directory: /tmp/pip-wheel-_z07kyqy
2021-07-12T09:37:59,537   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-cpemm6f1/mitre_67a02a07f1bf4328888aa1f84afb18f8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-cpemm6f1/mitre_67a02a07f1bf4328888aa1f84afb18f8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-_z07kyqy
2021-07-12T09:38:00,651   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-12T09:38:00,652     warnings.warn(
2021-07-12T09:38:00,788   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.9beta2' to '0.9b2'
2021-07-12T09:38:00,788     warnings.warn(tmpl.format(**locals()))
2021-07-12T09:38:00,834   running bdist_wheel
2021-07-12T09:38:00,839   running build
2021-07-12T09:38:00,840   running build_py
2021-07-12T09:38:00,985   creating build
2021-07-12T09:38:00,986   creating build/lib.linux-armv7l-3.9
2021-07-12T09:38:00,986   creating build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,987   copying mitre/posterior.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,991   copying mitre/logit_rule_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,993   copying mitre/key_comparison.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,995   copying mitre/main.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,999   copying mitre/__init__.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,000   copying mitre/test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,002   copying mitre/rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,006   copying mitre/lambda_quick_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,008   copying mitre/mvnpdf_cholesky.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,009   copying mitre/prior_by_primitive.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,012   copying mitre/command_line.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,014   copying mitre/logit_rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,019   copying mitre/visualization.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,021   copying mitre/logit_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,024   creating build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:01,025   copying mitre/data_processing/sequencing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:01,027   copying mitre/data_processing/transforms.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:01,030   copying mitre/data_processing/filtering.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:01,032   copying mitre/data_processing/__init__.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:01,034   copying mitre/data_processing/data_processing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:01,036   copying mitre/data_processing/synthetic_data.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:01,038   copying mitre/data_processing/crossvalidation.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:01,041   creating build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:01,042   copying mitre/load_data/distance_based.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:01,044   copying mitre/load_data/taxonomy_annotation.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:01,047   copying mitre/load_data/__init__.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:01,048   copying mitre/load_data/pplacer.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:01,051   copying mitre/load_data/basic.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:01,054   creating build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:01,055   copying mitre/trees/__init__.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:01,057   copying mitre/trees/priors.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:01,059   copying mitre/trees/simulators.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:01,061   copying mitre/trees/utilities.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:01,064   creating build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:01,065   copying mitre/comparison_methods/__init__.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:01,067   copying mitre/comparison_methods/sklearn_wrappers.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:01,069   running egg_info
2021-07-12T09:38:01,086   writing mitre.egg-info/PKG-INFO
2021-07-12T09:38:01,089   writing dependency_links to mitre.egg-info/dependency_links.txt
2021-07-12T09:38:01,091   writing entry points to mitre.egg-info/entry_points.txt
2021-07-12T09:38:01,092   writing requirements to mitre.egg-info/requires.txt
2021-07-12T09:38:01,093   writing top-level names to mitre.egg-info/top_level.txt
2021-07-12T09:38:01,132   reading manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:01,140   reading manifest template 'MANIFEST.in'
2021-07-12T09:38:01,350   adding license file 'LICENSE.txt'
2021-07-12T09:38:01,361   writing manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:01,370   copying mitre/efficient_likelihoods.c -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,406   copying mitre/efficient_likelihoods.pyx -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,414   copying mitre/quick_test.cfg -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,417   copying mitre/template.html -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,423   creating build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:01,424   copying mitre/example_data/CITATIONS.txt -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:01,427   copying mitre/example_data/example_settings.cfg -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:01,430   creating build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,431   copying mitre/example_data/bokulich/NOTE -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,434   copying mitre/example_data/bokulich/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,070   copying mitre/example_data/bokulich/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,129   copying mitre/example_data/bokulich/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,242   copying mitre/example_data/bokulich/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,247   copying mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,251   copying mitre/example_data/bokulich/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,265   copying mitre/example_data/bokulich/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,295   copying mitre/example_data/bokulich/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,301   copying mitre/example_data/bokulich/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,349   creating build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,350   copying mitre/example_data/david/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,613   copying mitre/example_data/david/david_long.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,615   copying mitre/example_data/david/mothur_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,656   copying mitre/example_data/david/placements.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,931   copying mitre/example_data/david/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,934   copying mitre/example_data/david/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,947   copying mitre/example_data/david/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:03,025   copying mitre/example_data/david/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:03,026   copying mitre/example_data/david/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:03,066   creating build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,067   copying mitre/example_data/digiulio/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,194   copying mitre/example_data/digiulio/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,221   copying mitre/example_data/digiulio/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,277   copying mitre/example_data/digiulio/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,281   copying mitre/example_data/digiulio/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,294   copying mitre/example_data/digiulio/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,369   copying mitre/example_data/digiulio/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,374   copying mitre/example_data/digiulio/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,428   copying mitre/example_data/digiulio/test.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,430   creating build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,431   copying mitre/example_data/karelia/README -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,434   copying mitre/example_data/karelia/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,783   copying mitre/example_data/karelia/add_any_allergy_variables.py -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,785   copying mitre/example_data/karelia/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,818   copying mitre/example_data/karelia/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,874   copying mitre/example_data/karelia/sample_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,877   copying mitre/example_data/karelia/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,881   copying mitre/example_data/karelia/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,889   copying mitre/example_data/karelia/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,919   copying mitre/example_data/karelia/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,922   copying mitre/example_data/karelia/subject_data_augmented.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,925   copying mitre/example_data/karelia/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,969   running build_ext
2021-07-12T09:38:04,278   building 'efficient_likelihoods' extension
2021-07-12T09:38:04,279   creating build/temp.linux-armv7l-3.9
2021-07-12T09:38:04,279   creating build/temp.linux-armv7l-3.9/mitre
2021-07-12T09:38:04,280   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mitre/efficient_likelihoods.c -o build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o
2021-07-12T09:38:04,797   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:38:04,798                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:38:04,798                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:04,798                    from mitre/efficient_likelihoods.c:274:
2021-07-12T09:38:04,798   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:38:04,799      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:38:04,799         |  ^~~~~~~
2021-07-12T09:38:04,975   mitre/efficient_likelihoods.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T09:38:04,979   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,979    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,980         |                     ^
2021-07-12T09:38:04,981   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,981                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,981                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,981   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,982     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,982         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,986   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,987    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,987         |                     ^
2021-07-12T09:38:04,987   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,987                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,988                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,988   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:04,988     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:04,988         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,993   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,993    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,993         |                     ^
2021-07-12T09:38:04,994   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,994                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,994                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,994   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,994     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,995         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,999   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:05,000    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:05,000         |                     ^
2021-07-12T09:38:05,000   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:05,000                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:05,001                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:05,001   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:05,001     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:05,001         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:05,006   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:05,006    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:05,006         |                     ^
2021-07-12T09:38:05,006   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:05,007                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:05,007                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:05,007   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:05,007     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:05,008         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:05,011   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:05,011    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:05,012         |                     ^
2021-07-12T09:38:05,012   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:05,012                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:05,012                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:05,013   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:05,013     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:05,013         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:05,016   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:05,016    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:05,016         |                         ^
2021-07-12T09:38:05,017   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:05,017                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:05,017                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:05,017   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:05,017     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:05,018         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:05,020   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:05,020    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:05,020         |                         ^
2021-07-12T09:38:05,021   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:05,021                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:05,021                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:05,021   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:05,022     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:05,022         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:05,024   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:05,024    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:05,024         |                         ^
2021-07-12T09:38:05,025   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:05,025                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:05,025                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:05,025   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:05,026     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:05,026         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:05,028   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:05,028    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:05,029         |                         ^
2021-07-12T09:38:05,029   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:05,029                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:05,029                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:05,030   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:05,030     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:05,030         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:05,032   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:05,033    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:05,033         |                         ^
2021-07-12T09:38:05,033   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:05,033                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:05,034                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:05,034   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:05,034     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:05,034         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:05,036   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:05,037    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:05,037         |                         ^
2021-07-12T09:38:05,037   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:05,038                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:05,038                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:05,038   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:05,038     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:05,039         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:05,233   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2021-07-12T09:38:05,234                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:05,234                    from mitre/efficient_likelihoods.c:274:
2021-07-12T09:38:05,235   At top level:
2021-07-12T09:38:05,235   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2021-07-12T09:38:05,235    1464 | _import_array(void)
2021-07-12T09:38:05,236         | ^~~~~~~~~~~~~
2021-07-12T09:38:11,409   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o -o build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:11,568   installing to build/bdist.linux-armv7l/wheel
2021-07-12T09:38:11,568   running install
2021-07-12T09:38:11,569   running install_lib
2021-07-12T09:38:11,574   creating build/bdist.linux-armv7l
2021-07-12T09:38:11,574   creating build/bdist.linux-armv7l/wheel
2021-07-12T09:38:11,575   copying build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-12T09:38:11,631   creating build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:11,633   copying build/lib.linux-armv7l-3.9/mitre/posterior.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:11,641   copying build/lib.linux-armv7l-3.9/mitre/logit_rule_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:11,645   copying build/lib.linux-armv7l-3.9/mitre/key_comparison.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:11,648   copying build/lib.linux-armv7l-3.9/mitre/main.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:11,655   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.c -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:11,699   creating build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:11,701   copying build/lib.linux-armv7l-3.9/mitre/example_data/CITATIONS.txt -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:11,706   creating build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,707   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,952   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,973   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,975   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,992   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:12,043   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/NOTE -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:12,046   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:12,050   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:12,124   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:12,152   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:12,156   creating build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,157   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,349   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,375   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,377   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,390   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/test.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,394   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,437   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,481   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,504   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,508   creating build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,510   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,901   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,923   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,927   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,938   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,980   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:13,044   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data_augmented.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:13,047   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:13,100   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/add_any_allergy_variables.py -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:13,103   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:13,108   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/README -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:13,111   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:13,116   copying build/lib.linux-armv7l-3.9/mitre/example_data/example_settings.cfg -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:13,120   creating build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,121   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,327   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,397   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,400   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,418   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,469   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/david_long.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,472   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/mothur_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,516   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/placements.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,746   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:13,749   copying build/lib.linux-armv7l-3.9/mitre/__init__.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,751   copying build/lib.linux-armv7l-3.9/mitre/test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,753   creating build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:13,754   copying build/lib.linux-armv7l-3.9/mitre/data_processing/sequencing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:13,756   copying build/lib.linux-armv7l-3.9/mitre/data_processing/transforms.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:13,759   copying build/lib.linux-armv7l-3.9/mitre/data_processing/filtering.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:13,761   copying build/lib.linux-armv7l-3.9/mitre/data_processing/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:13,763   copying build/lib.linux-armv7l-3.9/mitre/data_processing/data_processing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:13,765   copying build/lib.linux-armv7l-3.9/mitre/data_processing/synthetic_data.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:13,767   copying build/lib.linux-armv7l-3.9/mitre/data_processing/crossvalidation.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:13,769   copying build/lib.linux-armv7l-3.9/mitre/rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,773   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.pyx -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,776   copying build/lib.linux-armv7l-3.9/mitre/lambda_quick_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,779   creating build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:13,780   copying build/lib.linux-armv7l-3.9/mitre/load_data/distance_based.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:13,782   copying build/lib.linux-armv7l-3.9/mitre/load_data/taxonomy_annotation.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:13,785   copying build/lib.linux-armv7l-3.9/mitre/load_data/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:13,787   copying build/lib.linux-armv7l-3.9/mitre/load_data/pplacer.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:13,790   copying build/lib.linux-armv7l-3.9/mitre/load_data/basic.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:13,794   creating build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:13,795   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:13,797   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/sklearn_wrappers.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:13,801   copying build/lib.linux-armv7l-3.9/mitre/mvnpdf_cholesky.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,804   creating build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:13,805   copying build/lib.linux-armv7l-3.9/mitre/trees/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:13,807   copying build/lib.linux-armv7l-3.9/mitre/trees/priors.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:13,809   copying build/lib.linux-armv7l-3.9/mitre/trees/simulators.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:13,811   copying build/lib.linux-armv7l-3.9/mitre/trees/utilities.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:13,813   copying build/lib.linux-armv7l-3.9/mitre/template.html -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,817   copying build/lib.linux-armv7l-3.9/mitre/prior_by_primitive.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,820   copying build/lib.linux-armv7l-3.9/mitre/command_line.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,822   copying build/lib.linux-armv7l-3.9/mitre/quick_test.cfg -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,824   copying build/lib.linux-armv7l-3.9/mitre/logit_rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,828   copying build/lib.linux-armv7l-3.9/mitre/visualization.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,831   copying build/lib.linux-armv7l-3.9/mitre/logit_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:13,832   running install_egg_info
2021-07-12T09:38:13,839   Copying mitre.egg-info to build/bdist.linux-armv7l/wheel/mitre-0.9b2-py3.9.egg-info
2021-07-12T09:38:13,858   running install_scripts
2021-07-12T09:38:13,980   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-12T09:38:13,987   creating build/bdist.linux-armv7l/wheel/mitre-0.9b2.dist-info/WHEEL
2021-07-12T09:38:13,990   creating '/tmp/pip-wheel-_z07kyqy/mitre-0.9b2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T09:38:14,060   adding 'efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:14,065   adding 'mitre/__init__.py'
2021-07-12T09:38:14,066   adding 'mitre/command_line.py'
2021-07-12T09:38:14,096   adding 'mitre/efficient_likelihoods.c'
2021-07-12T09:38:14,101   adding 'mitre/efficient_likelihoods.pyx'
2021-07-12T09:38:14,102   adding 'mitre/key_comparison.py'
2021-07-12T09:38:14,104   adding 'mitre/lambda_quick_test.py'
2021-07-12T09:38:14,105   adding 'mitre/logit_rule_test.py'
2021-07-12T09:38:14,112   adding 'mitre/logit_rules.py'
2021-07-12T09:38:14,114   adding 'mitre/logit_test.py'
2021-07-12T09:38:14,123   adding 'mitre/main.py'
2021-07-12T09:38:14,125   adding 'mitre/mvnpdf_cholesky.py'
2021-07-12T09:38:14,130   adding 'mitre/posterior.py'
2021-07-12T09:38:14,132   adding 'mitre/prior_by_primitive.py'
2021-07-12T09:38:14,134   adding 'mitre/quick_test.cfg'
2021-07-12T09:38:14,142   adding 'mitre/rules.py'
2021-07-12T09:38:14,148   adding 'mitre/template.html'
2021-07-12T09:38:14,150   adding 'mitre/test.py'
2021-07-12T09:38:14,151   adding 'mitre/visualization.py'
2021-07-12T09:38:14,153   adding 'mitre/comparison_methods/__init__.py'
2021-07-12T09:38:14,155   adding 'mitre/comparison_methods/sklearn_wrappers.py'
2021-07-12T09:38:14,156   adding 'mitre/data_processing/__init__.py'
2021-07-12T09:38:14,158   adding 'mitre/data_processing/crossvalidation.py'
2021-07-12T09:38:14,159   adding 'mitre/data_processing/data_processing.py'
2021-07-12T09:38:14,162   adding 'mitre/data_processing/filtering.py'
2021-07-12T09:38:14,163   adding 'mitre/data_processing/sequencing.py'
2021-07-12T09:38:14,164   adding 'mitre/data_processing/synthetic_data.py'
2021-07-12T09:38:14,166   adding 'mitre/data_processing/transforms.py'
2021-07-12T09:38:14,168   adding 'mitre/example_data/CITATIONS.txt'
2021-07-12T09:38:14,170   adding 'mitre/example_data/example_settings.cfg'
2021-07-12T09:38:14,172   adding 'mitre/example_data/bokulich/NOTE'
2021-07-12T09:38:14,665   adding 'mitre/example_data/bokulich/abundance.csv'
2021-07-12T09:38:14,971   adding 'mitre/example_data/bokulich/dada2_placements.csv'
2021-07-12T09:38:15,541   adding 'mitre/example_data/bokulich/placement.jplace'
2021-07-12T09:38:15,571   adding 'mitre/example_data/bokulich/sample_metadata.csv'
2021-07-12T09:38:15,574   adding 'mitre/example_data/bokulich/sample_metadata_no_repeats.csv'
2021-07-12T09:38:15,625   adding 'mitre/example_data/bokulich/seq_info.csv'
2021-07-12T09:38:15,812   adding 'mitre/example_data/bokulich/sequence_key.fa'
2021-07-12T09:38:15,819   adding 'mitre/example_data/bokulich/subject_data.csv'
2021-07-12T09:38:15,953   adding 'mitre/example_data/bokulich/taxaTable.csv'
2021-07-12T09:38:16,369   adding 'mitre/example_data/david/abundance.csv'
2021-07-12T09:38:16,438   adding 'mitre/example_data/david/david_long.cfg.lsf'
2021-07-12T09:38:16,506   adding 'mitre/example_data/david/mothur_placements.csv'
2021-07-12T09:38:18,213   adding 'mitre/example_data/david/placements.jplace'
2021-07-12T09:38:18,305   adding 'mitre/example_data/david/sample_metadata.csv'
2021-07-12T09:38:18,355   adding 'mitre/example_data/david/seq_info.csv'
2021-07-12T09:38:18,725   adding 'mitre/example_data/david/sequence_key.fa'
2021-07-12T09:38:18,751   adding 'mitre/example_data/david/subject_data.csv'
2021-07-12T09:38:18,885   adding 'mitre/example_data/david/taxaTable.csv'
2021-07-12T09:38:19,215   adding 'mitre/example_data/digiulio/abundance.csv'
2021-07-12T09:38:19,418   adding 'mitre/example_data/digiulio/dada2_placements.csv'
2021-07-12T09:38:19,737   adding 'mitre/example_data/digiulio/placement.jplace'
2021-07-12T09:38:19,747   adding 'mitre/example_data/digiulio/sample_metadata.csv'
2021-07-12T09:38:19,798   adding 'mitre/example_data/digiulio/seq_info.csv'
2021-07-12T09:38:19,946   adding 'mitre/example_data/digiulio/sequence_key.fa'
2021-07-12T09:38:19,954   adding 'mitre/example_data/digiulio/subject_data.csv'
2021-07-12T09:38:20,088   adding 'mitre/example_data/digiulio/taxaTable.csv'
2021-07-12T09:38:20,102   adding 'mitre/example_data/digiulio/test.cfg.lsf'
2021-07-12T09:38:20,105   adding 'mitre/example_data/karelia/README'
2021-07-12T09:38:20,789   adding 'mitre/example_data/karelia/abundance.csv'
2021-07-12T09:38:20,933   adding 'mitre/example_data/karelia/add_any_allergy_variables.py'
2021-07-12T09:38:21,197   adding 'mitre/example_data/karelia/dada2_placements.csv'
2021-07-12T09:38:21,658   adding 'mitre/example_data/karelia/placement.jplace'
2021-07-12T09:38:21,688   adding 'mitre/example_data/karelia/sample_data.csv'
2021-07-12T09:38:21,698   adding 'mitre/example_data/karelia/sample_metadata.csv'
2021-07-12T09:38:21,748   adding 'mitre/example_data/karelia/seq_info.csv'
2021-07-12T09:38:21,994   adding 'mitre/example_data/karelia/sequence_key.fa'
2021-07-12T09:38:22,005   adding 'mitre/example_data/karelia/subject_data.csv'
2021-07-12T09:38:22,008   adding 'mitre/example_data/karelia/subject_data_augmented.csv'
2021-07-12T09:38:22,144   adding 'mitre/example_data/karelia/taxaTable.csv'
2021-07-12T09:38:22,159   adding 'mitre/load_data/__init__.py'
2021-07-12T09:38:22,161   adding 'mitre/load_data/basic.py'
2021-07-12T09:38:22,163   adding 'mitre/load_data/distance_based.py'
2021-07-12T09:38:22,168   adding 'mitre/load_data/pplacer.py'
2021-07-12T09:38:22,170   adding 'mitre/load_data/taxonomy_annotation.py'
2021-07-12T09:38:22,172   adding 'mitre/trees/__init__.py'
2021-07-12T09:38:22,174   adding 'mitre/trees/priors.py'
2021-07-12T09:38:22,175   adding 'mitre/trees/simulators.py'
2021-07-12T09:38:22,177   adding 'mitre/trees/utilities.py'
2021-07-12T09:38:22,185   adding 'mitre-0.9b2.dist-info/LICENSE.txt'
2021-07-12T09:38:22,187   adding 'mitre-0.9b2.dist-info/METADATA'
2021-07-12T09:38:22,189   adding 'mitre-0.9b2.dist-info/WHEEL'
2021-07-12T09:38:22,190   adding 'mitre-0.9b2.dist-info/entry_points.txt'
2021-07-12T09:38:22,191   adding 'mitre-0.9b2.dist-info/top_level.txt'
2021-07-12T09:38:22,193   adding 'mitre-0.9b2.dist-info/RECORD'
2021-07-12T09:38:22,340   removing build/bdist.linux-armv7l/wheel
2021-07-12T09:38:22,549   Building wheel for mitre (setup.py): finished with status 'done'
2021-07-12T09:38:22,676   Created wheel for mitre: filename=mitre-0.9b2-cp39-cp39-linux_armv7l.whl size=9836405 sha256=e357a5e5bb99e15de1e48b038d1e7e529157a982855c13bb9104554f3a6a4b96
2021-07-12T09:38:22,676   Stored in directory: /tmp/pip-ephem-wheel-cache-dljvgf98/wheels/5c/60/e1/73fae7ebfbd56000fcfe28d37c466fc19c6603cf34a3833336
2021-07-12T09:38:22,694 Successfully built mitre
2021-07-12T09:38:23,008 Removed build tracker: '/tmp/pip-req-tracker-20yb6zfl'