2021-07-12T09:37:56,596 Created temporary directory: /tmp/pip-ephem-wheel-cache-eg3qrceg
2021-07-12T09:37:56,599 Created temporary directory: /tmp/pip-req-tracker-a7rhsoup
2021-07-12T09:37:56,599 Initialized build tracking at /tmp/pip-req-tracker-a7rhsoup
2021-07-12T09:37:56,600 Created build tracker: /tmp/pip-req-tracker-a7rhsoup
2021-07-12T09:37:56,600 Entered build tracker: /tmp/pip-req-tracker-a7rhsoup
2021-07-12T09:37:56,601 Created temporary directory: /tmp/pip-wheel-pi16rbwf
2021-07-12T09:37:56,642 1 location(s) to search for versions of mitre:
2021-07-12T09:37:56,642 * https://pypi.org/simple/mitre/
2021-07-12T09:37:56,642 Fetching project page and analyzing links: https://pypi.org/simple/mitre/
2021-07-12T09:37:56,643 Getting page https://pypi.org/simple/mitre/
2021-07-12T09:37:56,644 Found index url https://pypi.org/simple
2021-07-12T09:37:56,758   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/59/f6/233a0adc07eaf97d28545b7f42f8c3bd3a6cd6f98179e644e75257ea869b/mitre-0.9b1-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=6b5a7e496c46a53d5e2b2067f67b1f1d94075b525acea979a32cff11b15542d3 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:56,758   Found link https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz#sha256=771589e92e4267a4e551dfd104be5d2cc2c6e5d56634bd29fefe937f976ccdaf (from https://pypi.org/simple/mitre/), version: 0.9b1
2021-07-12T09:37:56,759   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/47/14/38f5abf9aabdc12a77be89fbd69618cc833a9e9d4c2c81ba7b3d66f2babd/mitre-0.9b2-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=c58e141cf4c9e2f2755eaa54eb80a7fe8cceef243d154cb741688ac8d23c6116 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:56,759   Found link https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz#sha256=0bbb16e6d42ffb37620fd31ae547cf776d9e92aba926ff1c46eef6cca76f0fe1 (from https://pypi.org/simple/mitre/), version: 0.9b2
2021-07-12T09:37:56,760   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/07/a1/111c00ce0ab5508eb79f5375ca0fee326ce76b5800a53995018d7b80fb47/mitre-0.9b3-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3813a9da8f362e7918261410bd345fc19d2c0a3627b40fdb4b2d8ef2724e5579 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:56,760   Found link https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz#sha256=cbc0aaea05c289e3a56abf0c45506f663b7616e0138d28cd0725a1046ab61828 (from https://pypi.org/simple/mitre/), version: 0.9b3
2021-07-12T09:37:56,760   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6a/24/8151e74639efbec4abc53d046b077bc30a8030f0a4ed05f341896d08310f/mitre-0.9b4-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=b2ec818db040005ea1253503e2c6f9597d4cbc0538c45da6c73ef5d074ee562c (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:56,761   Found link https://files.pythonhosted.org/packages/5a/b9/ef6ba6d02cb43873415935aac15ae0af557bc19c68670a4df756a2d19cc4/mitre-0.9b4.tar.gz#sha256=b1885e1c527afaf8f0b9d3bf8b92b84343db20919b61271665acea7f162c9871 (from https://pypi.org/simple/mitre/), version: 0.9b4
2021-07-12T09:37:56,761   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/68/39/26cccdca887c89b2e366625711f0447880aa99e424e35fa0767f5f5e6005/mitre-0.9b5-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3e6023c4a9973a6d88196756aa0ebc54635513d0def0fdb91dd7a525b61eaf65 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:56,761   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/15/1344c018f16ea96f6563f2f783d516efb34ddc67d8b50e95ca55da75e7ce/mitre-0.9b5-py2.7-linux-x86_64.egg#sha256=71140d6aeedd1cea5694511d6b866689d44a247801853aa33a33d5be8f45bd0c (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:56,762   Found link https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz#sha256=80cc8624b88e26c34e2ff8023ee0eeb569fe731eb4df28354387dd8f46aca155 (from https://pypi.org/simple/mitre/), version: 0.9b5
2021-07-12T09:37:56,762   Found link https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz#sha256=358fbd057f95068b2f6372af424a71fee16d6a5eb780201de6958bc2ec201dcf (from https://pypi.org/simple/mitre/), version: 1.0b1
2021-07-12T09:37:56,762 Skipping link: not a file: https://pypi.org/simple/mitre/
2021-07-12T09:37:56,764 Given no hashes to check 1 links for project 'mitre': discarding no candidates
2021-07-12T09:37:56,783 Collecting mitre==0.9b5
2021-07-12T09:37:56,785   Created temporary directory: /tmp/pip-unpack-5rsd2k82
2021-07-12T09:37:57,794   Downloading mitre-0.9b5.tar.gz (9.5 MB)
2021-07-12T09:38:02,074   Added mitre==0.9b5 from https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz#sha256=80cc8624b88e26c34e2ff8023ee0eeb569fe731eb4df28354387dd8f46aca155 to build tracker '/tmp/pip-req-tracker-a7rhsoup'
2021-07-12T09:38:02,075     Running setup.py (path:/tmp/pip-wheel-pi16rbwf/mitre_aa6750f61fdb48faa686c9a277500a97/setup.py) egg_info for package mitre
2021-07-12T09:38:02,076     Created temporary directory: /tmp/pip-pip-egg-info-tri24kqj
2021-07-12T09:38:02,076     Running command python setup.py egg_info
2021-07-12T09:38:03,370     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-12T09:38:03,371       warnings.warn(
2021-07-12T09:38:03,494     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.9beta5' to '0.9b5'
2021-07-12T09:38:03,495       warnings.warn(tmpl.format(**locals()))
2021-07-12T09:38:03,525     running egg_info
2021-07-12T09:38:03,528     creating /tmp/pip-pip-egg-info-tri24kqj/mitre.egg-info
2021-07-12T09:38:03,529     writing /tmp/pip-pip-egg-info-tri24kqj/mitre.egg-info/PKG-INFO
2021-07-12T09:38:03,532     writing dependency_links to /tmp/pip-pip-egg-info-tri24kqj/mitre.egg-info/dependency_links.txt
2021-07-12T09:38:03,534     writing entry points to /tmp/pip-pip-egg-info-tri24kqj/mitre.egg-info/entry_points.txt
2021-07-12T09:38:03,536     writing requirements to /tmp/pip-pip-egg-info-tri24kqj/mitre.egg-info/requires.txt
2021-07-12T09:38:03,537     writing top-level names to /tmp/pip-pip-egg-info-tri24kqj/mitre.egg-info/top_level.txt
2021-07-12T09:38:03,539     writing manifest file '/tmp/pip-pip-egg-info-tri24kqj/mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:03,736     reading manifest file '/tmp/pip-pip-egg-info-tri24kqj/mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:03,739     reading manifest template 'MANIFEST.in'
2021-07-12T09:38:03,776     adding license file 'LICENSE.txt'
2021-07-12T09:38:03,782     writing manifest file '/tmp/pip-pip-egg-info-tri24kqj/mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:03,870   Source in /tmp/pip-wheel-pi16rbwf/mitre_aa6750f61fdb48faa686c9a277500a97 has version 0.9b5, which satisfies requirement mitre==0.9b5 from https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz#sha256=80cc8624b88e26c34e2ff8023ee0eeb569fe731eb4df28354387dd8f46aca155
2021-07-12T09:38:03,871   Removed mitre==0.9b5 from https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz#sha256=80cc8624b88e26c34e2ff8023ee0eeb569fe731eb4df28354387dd8f46aca155 from build tracker '/tmp/pip-req-tracker-a7rhsoup'
2021-07-12T09:38:03,875 Created temporary directory: /tmp/pip-unpack-9ol8jk8l
2021-07-12T09:38:03,875 Building wheels for collected packages: mitre
2021-07-12T09:38:03,880   Created temporary directory: /tmp/pip-wheel-ms49hjx2
2021-07-12T09:38:03,880   Building wheel for mitre (setup.py): started
2021-07-12T09:38:03,881   Destination directory: /tmp/pip-wheel-ms49hjx2
2021-07-12T09:38:03,881   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-pi16rbwf/mitre_aa6750f61fdb48faa686c9a277500a97/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-pi16rbwf/mitre_aa6750f61fdb48faa686c9a277500a97/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-ms49hjx2
2021-07-12T09:38:05,009   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-12T09:38:05,010     warnings.warn(
2021-07-12T09:38:05,137   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.9beta5' to '0.9b5'
2021-07-12T09:38:05,137     warnings.warn(tmpl.format(**locals()))
2021-07-12T09:38:05,180   running bdist_wheel
2021-07-12T09:38:05,185   running build
2021-07-12T09:38:05,185   running build_py
2021-07-12T09:38:05,326   creating build
2021-07-12T09:38:05,327   creating build/lib.linux-armv7l-3.9
2021-07-12T09:38:05,327   creating build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,328   copying mitre/logit_rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,332   copying mitre/key_comparison.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,334   copying mitre/prior_by_primitive.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,336   copying mitre/main.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,339   copying mitre/logit_rule_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,341   copying mitre/posterior.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,344   copying mitre/lambda_quick_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,345   copying mitre/logit_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,347   copying mitre/rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,351   copying mitre/command_line.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,353   copying mitre/test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,355   copying mitre/visualization.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,357   copying mitre/__init__.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,359   copying mitre/mvnpdf_cholesky.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,362   creating build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:05,362   copying mitre/data_processing/data_processing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:05,365   copying mitre/data_processing/transforms.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:05,367   copying mitre/data_processing/crossvalidation.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:05,369   copying mitre/data_processing/filtering.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:05,372   copying mitre/data_processing/synthetic_data.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:05,374   copying mitre/data_processing/sequencing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:05,375   copying mitre/data_processing/__init__.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:05,378   creating build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:05,379   copying mitre/load_data/taxonomy_annotation.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:05,381   copying mitre/load_data/distance_based.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:05,383   copying mitre/load_data/pplacer.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:05,386   copying mitre/load_data/basic.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:05,388   copying mitre/load_data/__init__.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:05,391   creating build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:05,391   copying mitre/trees/priors.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:05,393   copying mitre/trees/simulators.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:05,395   copying mitre/trees/utilities.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:05,397   copying mitre/trees/__init__.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:05,399   creating build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:05,401   copying mitre/comparison_methods/sklearn_wrappers.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:05,403   copying mitre/comparison_methods/__init__.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:05,405   running egg_info
2021-07-12T09:38:05,422   writing mitre.egg-info/PKG-INFO
2021-07-12T09:38:05,424   writing dependency_links to mitre.egg-info/dependency_links.txt
2021-07-12T09:38:05,426   writing entry points to mitre.egg-info/entry_points.txt
2021-07-12T09:38:05,427   writing requirements to mitre.egg-info/requires.txt
2021-07-12T09:38:05,428   writing top-level names to mitre.egg-info/top_level.txt
2021-07-12T09:38:05,463   reading manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:05,467   reading manifest template 'MANIFEST.in'
2021-07-12T09:38:05,494   adding license file 'LICENSE.txt'
2021-07-12T09:38:05,501   writing manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:05,509   copying mitre/efficient_likelihoods.c -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,521   copying mitre/efficient_likelihoods.pyx -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,523   copying mitre/quick_test.cfg -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,525   copying mitre/template.html -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:05,529   creating build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:05,530   copying mitre/example_data/CITATIONS.txt -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:05,533   copying mitre/example_data/example_settings.cfg -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:05,536   creating build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,536   copying mitre/example_data/bokulich/NOTE -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,539   copying mitre/example_data/bokulich/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,798   copying mitre/example_data/bokulich/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,823   copying mitre/example_data/bokulich/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,892   copying mitre/example_data/bokulich/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,894   copying mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,897   copying mitre/example_data/bokulich/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,907   copying mitre/example_data/bokulich/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,926   copying mitre/example_data/bokulich/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,928   copying mitre/example_data/bokulich/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:05,964   creating build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:05,965   copying mitre/example_data/david/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:06,138   copying mitre/example_data/david/david_long.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:06,140   copying mitre/example_data/david/mothur_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:06,175   copying mitre/example_data/david/placements.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:06,407   copying mitre/example_data/david/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:06,409   copying mitre/example_data/david/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:06,419   copying mitre/example_data/david/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:06,481   copying mitre/example_data/david/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:06,483   copying mitre/example_data/david/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:06,523   creating build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,524   copying mitre/example_data/digiulio/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,631   copying mitre/example_data/digiulio/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,652   copying mitre/example_data/digiulio/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,696   copying mitre/example_data/digiulio/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,699   copying mitre/example_data/digiulio/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,711   copying mitre/example_data/digiulio/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,733   copying mitre/example_data/digiulio/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,737   copying mitre/example_data/digiulio/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,777   copying mitre/example_data/digiulio/test.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:06,779   creating build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:06,780   copying mitre/example_data/karelia/README -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:06,782   copying mitre/example_data/karelia/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,086   copying mitre/example_data/karelia/add_any_allergy_variables.py -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,089   copying mitre/example_data/karelia/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,125   copying mitre/example_data/karelia/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,188   copying mitre/example_data/karelia/sample_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,192   copying mitre/example_data/karelia/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,195   copying mitre/example_data/karelia/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,206   copying mitre/example_data/karelia/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,237   copying mitre/example_data/karelia/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,240   copying mitre/example_data/karelia/subject_data_augmented.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,243   copying mitre/example_data/karelia/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:07,286   running build_ext
2021-07-12T09:38:07,593   building 'efficient_likelihoods' extension
2021-07-12T09:38:07,593   creating build/temp.linux-armv7l-3.9
2021-07-12T09:38:07,594   creating build/temp.linux-armv7l-3.9/mitre
2021-07-12T09:38:07,594   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mitre/efficient_likelihoods.c -o build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o
2021-07-12T09:38:07,978   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:38:07,978                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:38:07,978                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:07,979                    from mitre/efficient_likelihoods.c:274:
2021-07-12T09:38:07,979   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:38:07,979      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:38:07,979         |  ^~~~~~~
2021-07-12T09:38:08,106   mitre/efficient_likelihoods.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T09:38:08,109   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,109    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,109         |                     ^
2021-07-12T09:38:08,110   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,110                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,110                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,110   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:08,110     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:08,110         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,113   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,113    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,113         |                     ^
2021-07-12T09:38:08,114   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,114                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,114                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,114   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:08,114     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:08,114         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,117   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,117    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,117         |                     ^
2021-07-12T09:38:08,117   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,117                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,117                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,117   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:08,118     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:08,118         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,120   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,120    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,120         |                     ^
2021-07-12T09:38:08,121   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,121                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,121                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,121   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:08,121     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:08,121         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,124   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,124    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,124         |                     ^
2021-07-12T09:38:08,124   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,124                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,124                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,124   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:08,125     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:08,125         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,127   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,127    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,128         |                     ^
2021-07-12T09:38:08,128   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,128                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,128                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,128   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:08,128     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:08,128         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,132   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,132    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,132         |                         ^
2021-07-12T09:38:08,132   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,132                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,133                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,133   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:08,133     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:08,133         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,135   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,136    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,136         |                         ^
2021-07-12T09:38:08,136   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,136                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,136                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,136   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:08,136     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:08,136         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,139   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,139    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,139         |                         ^
2021-07-12T09:38:08,139   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,140                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,140                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,140   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:08,140     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:08,140         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,143   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,143    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,143         |                         ^
2021-07-12T09:38:08,143   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,143                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,143                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,143   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:08,144     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:08,144         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,146   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,146    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,147         |                         ^
2021-07-12T09:38:08,147   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,147                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,147                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,147   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:08,147     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:08,147         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,150   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:08,150    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:08,150         |                         ^
2021-07-12T09:38:08,150   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:08,150                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:08,151                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:08,151   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:08,151     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:08,151         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:08,329   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2021-07-12T09:38:08,329                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:08,330                    from mitre/efficient_likelihoods.c:274:
2021-07-12T09:38:08,330   At top level:
2021-07-12T09:38:08,330   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2021-07-12T09:38:08,330    1464 | _import_array(void)
2021-07-12T09:38:08,330         | ^~~~~~~~~~~~~
2021-07-12T09:38:13,925   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o -o build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:14,063   installing to build/bdist.linux-armv7l/wheel
2021-07-12T09:38:14,063   running install
2021-07-12T09:38:14,064   running install_lib
2021-07-12T09:38:14,069   creating build/bdist.linux-armv7l
2021-07-12T09:38:14,069   creating build/bdist.linux-armv7l/wheel
2021-07-12T09:38:14,071   copying build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-12T09:38:14,081   creating build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:14,082   copying build/lib.linux-armv7l-3.9/mitre/logit_rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:14,086   copying build/lib.linux-armv7l-3.9/mitre/template.html -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:14,089   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.pyx -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:14,092   creating build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:14,093   creating build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,094   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,123   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,245   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,267   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,270   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,312   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,351   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,360   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/test.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,362   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:14,365   creating build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,366   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,402   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,757   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data_augmented.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,760   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,763   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,794   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,798   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,837   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,899   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/add_any_allergy_variables.py -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,901   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,910   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/README -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,912   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:14,915   copying build/lib.linux-armv7l-3.9/mitre/example_data/example_settings.cfg -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:14,918   creating build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:14,918   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:14,949   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/NOTE -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:14,950   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:15,205   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:15,225   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:15,228   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:15,265   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:15,335   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:15,343   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:15,346   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:15,349   creating build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,349   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,523   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/placements.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,770   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,878   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/david_long.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,880   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,883   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,920   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,929   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/mothur_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,968   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:15,971   copying build/lib.linux-armv7l-3.9/mitre/example_data/CITATIONS.txt -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:15,973   copying build/lib.linux-armv7l-3.9/mitre/key_comparison.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:15,976   creating build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:15,977   copying build/lib.linux-armv7l-3.9/mitre/data_processing/data_processing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:15,980   copying build/lib.linux-armv7l-3.9/mitre/data_processing/transforms.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:15,982   copying build/lib.linux-armv7l-3.9/mitre/data_processing/crossvalidation.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:15,985   copying build/lib.linux-armv7l-3.9/mitre/data_processing/filtering.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:15,988   copying build/lib.linux-armv7l-3.9/mitre/data_processing/synthetic_data.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:15,991   copying build/lib.linux-armv7l-3.9/mitre/data_processing/sequencing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:15,993   copying build/lib.linux-armv7l-3.9/mitre/data_processing/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:15,995   copying build/lib.linux-armv7l-3.9/mitre/prior_by_primitive.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:15,999   creating build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:16,000   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/sklearn_wrappers.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:16,003   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:16,005   copying build/lib.linux-armv7l-3.9/mitre/main.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,009   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.c -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,022   copying build/lib.linux-armv7l-3.9/mitre/logit_rule_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,025   copying build/lib.linux-armv7l-3.9/mitre/posterior.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,028   copying build/lib.linux-armv7l-3.9/mitre/lambda_quick_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,031   copying build/lib.linux-armv7l-3.9/mitre/logit_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,034   creating build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:16,035   copying build/lib.linux-armv7l-3.9/mitre/load_data/taxonomy_annotation.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:16,039   copying build/lib.linux-armv7l-3.9/mitre/load_data/distance_based.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:16,041   copying build/lib.linux-armv7l-3.9/mitre/load_data/pplacer.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:16,045   copying build/lib.linux-armv7l-3.9/mitre/load_data/basic.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:16,048   copying build/lib.linux-armv7l-3.9/mitre/load_data/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:16,051   creating build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:16,053   copying build/lib.linux-armv7l-3.9/mitre/trees/priors.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:16,055   copying build/lib.linux-armv7l-3.9/mitre/trees/simulators.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:16,058   copying build/lib.linux-armv7l-3.9/mitre/trees/utilities.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:16,060   copying build/lib.linux-armv7l-3.9/mitre/trees/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:16,063   copying build/lib.linux-armv7l-3.9/mitre/rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,067   copying build/lib.linux-armv7l-3.9/mitre/command_line.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,070   copying build/lib.linux-armv7l-3.9/mitre/quick_test.cfg -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,072   copying build/lib.linux-armv7l-3.9/mitre/test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,074   copying build/lib.linux-armv7l-3.9/mitre/visualization.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,077   copying build/lib.linux-armv7l-3.9/mitre/__init__.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,080   copying build/lib.linux-armv7l-3.9/mitre/mvnpdf_cholesky.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:16,082   running install_egg_info
2021-07-12T09:38:16,088   Copying mitre.egg-info to build/bdist.linux-armv7l/wheel/mitre-0.9b5-py3.9.egg-info
2021-07-12T09:38:16,107   running install_scripts
2021-07-12T09:38:16,196   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-12T09:38:16,202   creating build/bdist.linux-armv7l/wheel/mitre-0.9b5.dist-info/WHEEL
2021-07-12T09:38:16,205   creating '/tmp/pip-wheel-ms49hjx2/mitre-0.9b5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T09:38:16,276   adding 'efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:16,281   adding 'mitre/__init__.py'
2021-07-12T09:38:16,283   adding 'mitre/command_line.py'
2021-07-12T09:38:16,313   adding 'mitre/efficient_likelihoods.c'
2021-07-12T09:38:16,318   adding 'mitre/efficient_likelihoods.pyx'
2021-07-12T09:38:16,320   adding 'mitre/key_comparison.py'
2021-07-12T09:38:16,322   adding 'mitre/lambda_quick_test.py'
2021-07-12T09:38:16,323   adding 'mitre/logit_rule_test.py'
2021-07-12T09:38:16,331   adding 'mitre/logit_rules.py'
2021-07-12T09:38:16,333   adding 'mitre/logit_test.py'
2021-07-12T09:38:16,341   adding 'mitre/main.py'
2021-07-12T09:38:16,344   adding 'mitre/mvnpdf_cholesky.py'
2021-07-12T09:38:16,350   adding 'mitre/posterior.py'
2021-07-12T09:38:16,352   adding 'mitre/prior_by_primitive.py'
2021-07-12T09:38:16,354   adding 'mitre/quick_test.cfg'
2021-07-12T09:38:16,362   adding 'mitre/rules.py'
2021-07-12T09:38:16,368   adding 'mitre/template.html'
2021-07-12T09:38:16,369   adding 'mitre/test.py'
2021-07-12T09:38:16,371   adding 'mitre/visualization.py'
2021-07-12T09:38:16,373   adding 'mitre/comparison_methods/__init__.py'
2021-07-12T09:38:16,375   adding 'mitre/comparison_methods/sklearn_wrappers.py'
2021-07-12T09:38:16,377   adding 'mitre/data_processing/__init__.py'
2021-07-12T09:38:16,379   adding 'mitre/data_processing/crossvalidation.py'
2021-07-12T09:38:16,381   adding 'mitre/data_processing/data_processing.py'
2021-07-12T09:38:16,383   adding 'mitre/data_processing/filtering.py'
2021-07-12T09:38:16,385   adding 'mitre/data_processing/sequencing.py'
2021-07-12T09:38:16,386   adding 'mitre/data_processing/synthetic_data.py'
2021-07-12T09:38:16,389   adding 'mitre/data_processing/transforms.py'
2021-07-12T09:38:16,391   adding 'mitre/example_data/CITATIONS.txt'
2021-07-12T09:38:16,392   adding 'mitre/example_data/example_settings.cfg'
2021-07-12T09:38:16,395   adding 'mitre/example_data/bokulich/NOTE'
2021-07-12T09:38:16,881   adding 'mitre/example_data/bokulich/abundance.csv'
2021-07-12T09:38:17,184   adding 'mitre/example_data/bokulich/dada2_placements.csv'
2021-07-12T09:38:17,739   adding 'mitre/example_data/bokulich/placement.jplace'
2021-07-12T09:38:17,770   adding 'mitre/example_data/bokulich/sample_metadata.csv'
2021-07-12T09:38:17,773   adding 'mitre/example_data/bokulich/sample_metadata_no_repeats.csv'
2021-07-12T09:38:17,823   adding 'mitre/example_data/bokulich/seq_info.csv'
2021-07-12T09:38:18,008   adding 'mitre/example_data/bokulich/sequence_key.fa'
2021-07-12T09:38:18,015   adding 'mitre/example_data/bokulich/subject_data.csv'
2021-07-12T09:38:18,146   adding 'mitre/example_data/bokulich/taxaTable.csv'
2021-07-12T09:38:18,557   adding 'mitre/example_data/david/abundance.csv'
2021-07-12T09:38:18,626   adding 'mitre/example_data/david/david_long.cfg.lsf'
2021-07-12T09:38:18,692   adding 'mitre/example_data/david/mothur_placements.csv'
2021-07-12T09:38:20,358   adding 'mitre/example_data/david/placements.jplace'
2021-07-12T09:38:20,450   adding 'mitre/example_data/david/sample_metadata.csv'
2021-07-12T09:38:20,499   adding 'mitre/example_data/david/seq_info.csv'
2021-07-12T09:38:20,864   adding 'mitre/example_data/david/sequence_key.fa'
2021-07-12T09:38:20,891   adding 'mitre/example_data/david/subject_data.csv'
2021-07-12T09:38:21,022   adding 'mitre/example_data/david/taxaTable.csv'
2021-07-12T09:38:21,349   adding 'mitre/example_data/digiulio/abundance.csv'
2021-07-12T09:38:21,550   adding 'mitre/example_data/digiulio/dada2_placements.csv'
2021-07-12T09:38:21,855   adding 'mitre/example_data/digiulio/placement.jplace'
2021-07-12T09:38:21,873   adding 'mitre/example_data/digiulio/sample_metadata.csv'
2021-07-12T09:38:21,922   adding 'mitre/example_data/digiulio/seq_info.csv'
2021-07-12T09:38:22,069   adding 'mitre/example_data/digiulio/sequence_key.fa'
2021-07-12T09:38:22,077   adding 'mitre/example_data/digiulio/subject_data.csv'
2021-07-12T09:38:22,208   adding 'mitre/example_data/digiulio/taxaTable.csv'
2021-07-12T09:38:22,222   adding 'mitre/example_data/digiulio/test.cfg.lsf'
2021-07-12T09:38:22,224   adding 'mitre/example_data/karelia/README'
2021-07-12T09:38:22,898   adding 'mitre/example_data/karelia/abundance.csv'
2021-07-12T09:38:23,042   adding 'mitre/example_data/karelia/add_any_allergy_variables.py'
2021-07-12T09:38:23,302   adding 'mitre/example_data/karelia/dada2_placements.csv'
2021-07-12T09:38:23,760   adding 'mitre/example_data/karelia/placement.jplace'
2021-07-12T09:38:23,790   adding 'mitre/example_data/karelia/sample_data.csv'
2021-07-12T09:38:23,799   adding 'mitre/example_data/karelia/sample_metadata.csv'
2021-07-12T09:38:23,848   adding 'mitre/example_data/karelia/seq_info.csv'
2021-07-12T09:38:24,091   adding 'mitre/example_data/karelia/sequence_key.fa'
2021-07-12T09:38:24,102   adding 'mitre/example_data/karelia/subject_data.csv'
2021-07-12T09:38:24,105   adding 'mitre/example_data/karelia/subject_data_augmented.csv'
2021-07-12T09:38:24,235   adding 'mitre/example_data/karelia/taxaTable.csv'
2021-07-12T09:38:24,250   adding 'mitre/load_data/__init__.py'
2021-07-12T09:38:24,252   adding 'mitre/load_data/basic.py'
2021-07-12T09:38:24,254   adding 'mitre/load_data/distance_based.py'
2021-07-12T09:38:24,259   adding 'mitre/load_data/pplacer.py'
2021-07-12T09:38:24,262   adding 'mitre/load_data/taxonomy_annotation.py'
2021-07-12T09:38:24,264   adding 'mitre/trees/__init__.py'
2021-07-12T09:38:24,266   adding 'mitre/trees/priors.py'
2021-07-12T09:38:24,267   adding 'mitre/trees/simulators.py'
2021-07-12T09:38:24,269   adding 'mitre/trees/utilities.py'
2021-07-12T09:38:24,277   adding 'mitre-0.9b5.dist-info/LICENSE.txt'
2021-07-12T09:38:24,279   adding 'mitre-0.9b5.dist-info/METADATA'
2021-07-12T09:38:24,280   adding 'mitre-0.9b5.dist-info/WHEEL'
2021-07-12T09:38:24,281   adding 'mitre-0.9b5.dist-info/entry_points.txt'
2021-07-12T09:38:24,282   adding 'mitre-0.9b5.dist-info/top_level.txt'
2021-07-12T09:38:24,284   adding 'mitre-0.9b5.dist-info/RECORD'
2021-07-12T09:38:24,435   removing build/bdist.linux-armv7l/wheel
2021-07-12T09:38:24,626   Building wheel for mitre (setup.py): finished with status 'done'
2021-07-12T09:38:24,748   Created wheel for mitre: filename=mitre-0.9b5-cp39-cp39-linux_armv7l.whl size=9834078 sha256=72dd3963e3f14d6e8b9ced9d59c24b949c070dcec53f91e339eb4c5708dc7233
2021-07-12T09:38:24,749   Stored in directory: /tmp/pip-ephem-wheel-cache-eg3qrceg/wheels/77/67/ca/2cfdc92b741c9e40a111b6e6e9fabd0e8aa28edb30ebbca8be
2021-07-12T09:38:24,766 Successfully built mitre
2021-07-12T09:38:25,079 Removed build tracker: '/tmp/pip-req-tracker-a7rhsoup'