2021-07-12T09:37:49,902 Created temporary directory: /tmp/pip-ephem-wheel-cache-_avy23_q
2021-07-12T09:37:49,905 Created temporary directory: /tmp/pip-req-tracker-95k3xjkk
2021-07-12T09:37:49,906 Initialized build tracking at /tmp/pip-req-tracker-95k3xjkk
2021-07-12T09:37:49,906 Created build tracker: /tmp/pip-req-tracker-95k3xjkk
2021-07-12T09:37:49,906 Entered build tracker: /tmp/pip-req-tracker-95k3xjkk
2021-07-12T09:37:49,907 Created temporary directory: /tmp/pip-wheel-9ex2x6zs
2021-07-12T09:37:49,938 1 location(s) to search for versions of mitre:
2021-07-12T09:37:49,938 * https://pypi.org/simple/mitre/
2021-07-12T09:37:49,939 Fetching project page and analyzing links: https://pypi.org/simple/mitre/
2021-07-12T09:37:49,939 Getting page https://pypi.org/simple/mitre/
2021-07-12T09:37:49,941 Found index url https://pypi.org/simple
2021-07-12T09:37:50,140   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/59/f6/233a0adc07eaf97d28545b7f42f8c3bd3a6cd6f98179e644e75257ea869b/mitre-0.9b1-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=6b5a7e496c46a53d5e2b2067f67b1f1d94075b525acea979a32cff11b15542d3 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,141   Found link https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz#sha256=771589e92e4267a4e551dfd104be5d2cc2c6e5d56634bd29fefe937f976ccdaf (from https://pypi.org/simple/mitre/), version: 0.9b1
2021-07-12T09:37:50,141   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/47/14/38f5abf9aabdc12a77be89fbd69618cc833a9e9d4c2c81ba7b3d66f2babd/mitre-0.9b2-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=c58e141cf4c9e2f2755eaa54eb80a7fe8cceef243d154cb741688ac8d23c6116 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,142   Found link https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz#sha256=0bbb16e6d42ffb37620fd31ae547cf776d9e92aba926ff1c46eef6cca76f0fe1 (from https://pypi.org/simple/mitre/), version: 0.9b2
2021-07-12T09:37:50,142   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/07/a1/111c00ce0ab5508eb79f5375ca0fee326ce76b5800a53995018d7b80fb47/mitre-0.9b3-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3813a9da8f362e7918261410bd345fc19d2c0a3627b40fdb4b2d8ef2724e5579 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,142   Found link https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz#sha256=cbc0aaea05c289e3a56abf0c45506f663b7616e0138d28cd0725a1046ab61828 (from https://pypi.org/simple/mitre/), version: 0.9b3
2021-07-12T09:37:50,143   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6a/24/8151e74639efbec4abc53d046b077bc30a8030f0a4ed05f341896d08310f/mitre-0.9b4-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=b2ec818db040005ea1253503e2c6f9597d4cbc0538c45da6c73ef5d074ee562c (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,143   Found link https://files.pythonhosted.org/packages/5a/b9/ef6ba6d02cb43873415935aac15ae0af557bc19c68670a4df756a2d19cc4/mitre-0.9b4.tar.gz#sha256=b1885e1c527afaf8f0b9d3bf8b92b84343db20919b61271665acea7f162c9871 (from https://pypi.org/simple/mitre/), version: 0.9b4
2021-07-12T09:37:50,144   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/68/39/26cccdca887c89b2e366625711f0447880aa99e424e35fa0767f5f5e6005/mitre-0.9b5-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3e6023c4a9973a6d88196756aa0ebc54635513d0def0fdb91dd7a525b61eaf65 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,144   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/15/1344c018f16ea96f6563f2f783d516efb34ddc67d8b50e95ca55da75e7ce/mitre-0.9b5-py2.7-linux-x86_64.egg#sha256=71140d6aeedd1cea5694511d6b866689d44a247801853aa33a33d5be8f45bd0c (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,144   Found link https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz#sha256=80cc8624b88e26c34e2ff8023ee0eeb569fe731eb4df28354387dd8f46aca155 (from https://pypi.org/simple/mitre/), version: 0.9b5
2021-07-12T09:37:50,144   Found link https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz#sha256=358fbd057f95068b2f6372af424a71fee16d6a5eb780201de6958bc2ec201dcf (from https://pypi.org/simple/mitre/), version: 1.0b1
2021-07-12T09:37:50,145 Skipping link: not a file: https://pypi.org/simple/mitre/
2021-07-12T09:37:50,147 Given no hashes to check 1 links for project 'mitre': discarding no candidates
2021-07-12T09:37:50,166 Collecting mitre==0.9b1
2021-07-12T09:37:50,167   Created temporary directory: /tmp/pip-unpack-510w0ohg
2021-07-12T09:37:52,156   Downloading mitre-0.9b1.tar.gz (9.5 MB)
2021-07-12T09:37:56,593   Added mitre==0.9b1 from https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz#sha256=771589e92e4267a4e551dfd104be5d2cc2c6e5d56634bd29fefe937f976ccdaf to build tracker '/tmp/pip-req-tracker-95k3xjkk'
2021-07-12T09:37:56,595     Running setup.py (path:/tmp/pip-wheel-9ex2x6zs/mitre_e232bcfa9a31400da49fedeaeb22e49c/setup.py) egg_info for package mitre
2021-07-12T09:37:56,595     Created temporary directory: /tmp/pip-pip-egg-info-jnt3tz6o
2021-07-12T09:37:56,596     Running command python setup.py egg_info
2021-07-12T09:37:58,157     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.9beta1' to '0.9b1'
2021-07-12T09:37:58,158       warnings.warn(tmpl.format(**locals()))
2021-07-12T09:37:58,188     running egg_info
2021-07-12T09:37:58,190     creating /tmp/pip-pip-egg-info-jnt3tz6o/mitre.egg-info
2021-07-12T09:37:58,192     writing /tmp/pip-pip-egg-info-jnt3tz6o/mitre.egg-info/PKG-INFO
2021-07-12T09:37:58,195     writing dependency_links to /tmp/pip-pip-egg-info-jnt3tz6o/mitre.egg-info/dependency_links.txt
2021-07-12T09:37:58,196     writing entry points to /tmp/pip-pip-egg-info-jnt3tz6o/mitre.egg-info/entry_points.txt
2021-07-12T09:37:58,198     writing requirements to /tmp/pip-pip-egg-info-jnt3tz6o/mitre.egg-info/requires.txt
2021-07-12T09:37:58,198     writing top-level names to /tmp/pip-pip-egg-info-jnt3tz6o/mitre.egg-info/top_level.txt
2021-07-12T09:37:58,200     writing manifest file '/tmp/pip-pip-egg-info-jnt3tz6o/mitre.egg-info/SOURCES.txt'
2021-07-12T09:37:58,381     reading manifest file '/tmp/pip-pip-egg-info-jnt3tz6o/mitre.egg-info/SOURCES.txt'
2021-07-12T09:37:58,384     reading manifest template 'MANIFEST.in'
2021-07-12T09:37:58,412     adding license file 'LICENSE.txt'
2021-07-12T09:37:58,418     writing manifest file '/tmp/pip-pip-egg-info-jnt3tz6o/mitre.egg-info/SOURCES.txt'
2021-07-12T09:37:58,503   Source in /tmp/pip-wheel-9ex2x6zs/mitre_e232bcfa9a31400da49fedeaeb22e49c has version 0.9b1, which satisfies requirement mitre==0.9b1 from https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz#sha256=771589e92e4267a4e551dfd104be5d2cc2c6e5d56634bd29fefe937f976ccdaf
2021-07-12T09:37:58,504   Removed mitre==0.9b1 from https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz#sha256=771589e92e4267a4e551dfd104be5d2cc2c6e5d56634bd29fefe937f976ccdaf from build tracker '/tmp/pip-req-tracker-95k3xjkk'
2021-07-12T09:37:58,509 Created temporary directory: /tmp/pip-unpack-cy16xewt
2021-07-12T09:37:58,509 Building wheels for collected packages: mitre
2021-07-12T09:37:58,513   Created temporary directory: /tmp/pip-wheel-wun8pybx
2021-07-12T09:37:58,514   Building wheel for mitre (setup.py): started
2021-07-12T09:37:58,514   Destination directory: /tmp/pip-wheel-wun8pybx
2021-07-12T09:37:58,514   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-9ex2x6zs/mitre_e232bcfa9a31400da49fedeaeb22e49c/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-9ex2x6zs/mitre_e232bcfa9a31400da49fedeaeb22e49c/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-wun8pybx
2021-07-12T09:37:59,787   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.9beta1' to '0.9b1'
2021-07-12T09:37:59,788     warnings.warn(tmpl.format(**locals()))
2021-07-12T09:37:59,831   running bdist_wheel
2021-07-12T09:37:59,836   running build
2021-07-12T09:37:59,836   running build_py
2021-07-12T09:37:59,978   creating build
2021-07-12T09:37:59,979   creating build/lib.linux-armv7l-3.9
2021-07-12T09:37:59,979   creating build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:37:59,980   copying mitre/main.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:37:59,984   copying mitre/rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:37:59,990   copying mitre/logit_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:37:59,991   copying mitre/mvnpdf_cholesky.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:37:59,993   copying mitre/posterior.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:37:59,996   copying mitre/prior_by_primitive.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:37:59,998   copying mitre/__init__.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,000   copying mitre/key_comparison.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,002   copying mitre/command_line.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,004   copying mitre/visualization.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,006   copying mitre/logit_rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,011   copying mitre/lambda_quick_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,013   copying mitre/logit_rule_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,015   copying mitre/test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,018   creating build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,019   copying mitre/data_processing/sequencing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,021   copying mitre/data_processing/data_processing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,023   copying mitre/data_processing/filtering.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,026   copying mitre/data_processing/__init__.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,027   copying mitre/data_processing/synthetic_data.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,029   copying mitre/data_processing/transforms.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,032   copying mitre/data_processing/crossvalidation.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,035   creating build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,036   copying mitre/load_data/distance_based.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,038   copying mitre/load_data/basic.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,040   copying mitre/load_data/__init__.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,043   copying mitre/load_data/pplacer.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,046   copying mitre/load_data/taxonomy_annotation.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,050   creating build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,050   copying mitre/trees/priors.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,053   copying mitre/trees/__init__.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,054   copying mitre/trees/utilities.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,056   copying mitre/trees/simulators.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,059   creating build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:00,060   copying mitre/comparison_methods/__init__.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:00,062   copying mitre/comparison_methods/sklearn_wrappers.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:00,064   running egg_info
2021-07-12T09:38:00,078   writing mitre.egg-info/PKG-INFO
2021-07-12T09:38:00,080   writing dependency_links to mitre.egg-info/dependency_links.txt
2021-07-12T09:38:00,082   writing entry points to mitre.egg-info/entry_points.txt
2021-07-12T09:38:00,083   writing requirements to mitre.egg-info/requires.txt
2021-07-12T09:38:00,084   writing top-level names to mitre.egg-info/top_level.txt
2021-07-12T09:38:00,119   reading manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:00,123   reading manifest template 'MANIFEST.in'
2021-07-12T09:38:00,149   adding license file 'LICENSE.txt'
2021-07-12T09:38:00,156   writing manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:00,163   copying mitre/efficient_likelihoods.c -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,174   copying mitre/efficient_likelihoods.pyx -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,177   copying mitre/quick_test.cfg -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,179   copying mitre/template.html -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,182   creating build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:00,183   copying mitre/example_data/CITATIONS.txt -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:00,185   copying mitre/example_data/example_settings.cfg -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:00,187   creating build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,188   copying mitre/example_data/bokulich/NOTE -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,190   copying mitre/example_data/bokulich/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,431   copying mitre/example_data/bokulich/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,456   copying mitre/example_data/bokulich/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,527   copying mitre/example_data/bokulich/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,530   copying mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,533   copying mitre/example_data/bokulich/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,543   copying mitre/example_data/bokulich/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,564   copying mitre/example_data/bokulich/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,567   copying mitre/example_data/bokulich/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:00,606   creating build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:00,606   copying mitre/example_data/david/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:00,778   copying mitre/example_data/david/david_long.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:00,780   copying mitre/example_data/david/mothur_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:00,820   copying mitre/example_data/david/placements.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:01,048   copying mitre/example_data/david/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:01,051   copying mitre/example_data/david/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:01,062   copying mitre/example_data/david/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:01,126   copying mitre/example_data/david/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:01,128   copying mitre/example_data/david/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:01,172   creating build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,173   copying mitre/example_data/digiulio/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,283   copying mitre/example_data/digiulio/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,359   copying mitre/example_data/digiulio/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,415   copying mitre/example_data/digiulio/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,418   copying mitre/example_data/digiulio/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,428   copying mitre/example_data/digiulio/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,450   copying mitre/example_data/digiulio/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,453   copying mitre/example_data/digiulio/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,491   copying mitre/example_data/digiulio/test.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:01,493   creating build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:01,494   copying mitre/example_data/karelia/README -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:01,496   copying mitre/example_data/karelia/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,281   copying mitre/example_data/karelia/add_any_allergy_variables.py -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,284   copying mitre/example_data/karelia/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,316   copying mitre/example_data/karelia/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,389   copying mitre/example_data/karelia/sample_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,393   copying mitre/example_data/karelia/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,398   copying mitre/example_data/karelia/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,412   copying mitre/example_data/karelia/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,480   copying mitre/example_data/karelia/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,487   copying mitre/example_data/karelia/subject_data_augmented.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,494   copying mitre/example_data/karelia/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:02,614   running build_ext
2021-07-12T09:38:02,977   building 'efficient_likelihoods' extension
2021-07-12T09:38:02,978   creating build/temp.linux-armv7l-3.9
2021-07-12T09:38:02,978   creating build/temp.linux-armv7l-3.9/mitre
2021-07-12T09:38:02,979   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mitre/efficient_likelihoods.c -o build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o
2021-07-12T09:38:03,647   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:38:03,647                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:38:03,647                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:03,647                    from mitre/efficient_likelihoods.c:274:
2021-07-12T09:38:03,647   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:38:03,647      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:38:03,648         |  ^~~~~~~
2021-07-12T09:38:03,785   mitre/efficient_likelihoods.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T09:38:03,789   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,789    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,789         |                     ^
2021-07-12T09:38:03,790   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,790                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,790                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,790   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:03,790     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:03,791         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,794   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,794    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,795         |                     ^
2021-07-12T09:38:03,795   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,795                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,795                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,795   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:03,795     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:03,795         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,799   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,799    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,799         |                     ^
2021-07-12T09:38:03,800   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,800                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,800                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,800   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:03,800     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:03,800         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,804   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,804    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,804         |                     ^
2021-07-12T09:38:03,804   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,805                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,805                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,805   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:03,805     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:03,805         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,809   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,809    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,809         |                     ^
2021-07-12T09:38:03,809   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,809                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,809                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,810   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:03,810     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:03,810         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,813   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,814    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,814         |                     ^
2021-07-12T09:38:03,814   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,814                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,814                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,814   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:03,814     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:03,815         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,819   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,819    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,820         |                         ^
2021-07-12T09:38:03,820   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,820                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,820                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,820   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:03,820     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:03,820         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,824   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,824    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,824         |                         ^
2021-07-12T09:38:03,825   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,825                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,825                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,825   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:03,825     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:03,825         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,828   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,828    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,828         |                         ^
2021-07-12T09:38:03,828   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,828                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,828                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,829   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:03,829     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:03,829         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,832   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,832    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,832         |                         ^
2021-07-12T09:38:03,832   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,832                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,832                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,832   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:03,833     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:03,833         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,835   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,836    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,836         |                         ^
2021-07-12T09:38:03,836   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,836                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,836                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,836   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:03,836     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:03,836         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:03,839   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:03,839    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:03,839         |                         ^
2021-07-12T09:38:03,840   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:03,840                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:03,840                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:03,840   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:03,840     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:03,840         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,019   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2021-07-12T09:38:04,020                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:04,020                    from mitre/efficient_likelihoods.c:274:
2021-07-12T09:38:04,020   At top level:
2021-07-12T09:38:04,020   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2021-07-12T09:38:04,020    1464 | _import_array(void)
2021-07-12T09:38:04,021         | ^~~~~~~~~~~~~
2021-07-12T09:38:09,669   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o -o build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:09,802   installing to build/bdist.linux-armv7l/wheel
2021-07-12T09:38:09,803   running install
2021-07-12T09:38:09,804   running install_lib
2021-07-12T09:38:09,809   creating build/bdist.linux-armv7l
2021-07-12T09:38:09,810   creating build/bdist.linux-armv7l/wheel
2021-07-12T09:38:09,811   copying build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-12T09:38:09,822   creating build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:09,823   copying build/lib.linux-armv7l-3.9/mitre/main.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:09,828   copying build/lib.linux-armv7l-3.9/mitre/rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:09,832   copying build/lib.linux-armv7l-3.9/mitre/quick_test.cfg -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:09,834   copying build/lib.linux-armv7l-3.9/mitre/logit_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:09,836   copying build/lib.linux-armv7l-3.9/mitre/mvnpdf_cholesky.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:09,838   creating build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:09,840   creating build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:09,841   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/placements.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:10,062   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:10,064   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:10,222   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:10,255   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:10,325   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/mothur_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:10,364   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/david_long.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:10,366   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:10,376   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:10,379   copying build/lib.linux-armv7l-3.9/mitre/example_data/CITATIONS.txt -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:10,381   creating build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,382   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,385   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,749   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,793   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,825   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data_augmented.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,828   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/README -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,830   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,841   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,844   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,847   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/add_any_allergy_variables.py -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,849   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,889   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:10,999   copying build/lib.linux-armv7l-3.9/mitre/example_data/example_settings.cfg -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:11,004   creating build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,006   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,009   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/NOTE -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,013   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,339   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,378   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,397   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,408   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,410   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,413   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,443   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,537   creating build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,538   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,540   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,653   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,738   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,767   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,778   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,781   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/test.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,782   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,812   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,861   creating build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:11,862   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:11,864   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/sklearn_wrappers.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:11,866   copying build/lib.linux-armv7l-3.9/mitre/posterior.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:11,871   creating build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:11,872   copying build/lib.linux-armv7l-3.9/mitre/load_data/distance_based.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:11,874   copying build/lib.linux-armv7l-3.9/mitre/load_data/basic.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:11,877   copying build/lib.linux-armv7l-3.9/mitre/load_data/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:11,879   copying build/lib.linux-armv7l-3.9/mitre/load_data/pplacer.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:11,884   copying build/lib.linux-armv7l-3.9/mitre/load_data/taxonomy_annotation.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:11,891   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.c -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,142   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.pyx -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,146   copying build/lib.linux-armv7l-3.9/mitre/prior_by_primitive.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,151   copying build/lib.linux-armv7l-3.9/mitre/__init__.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,156   creating build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:12,157   copying build/lib.linux-armv7l-3.9/mitre/data_processing/sequencing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:12,159   copying build/lib.linux-armv7l-3.9/mitre/data_processing/data_processing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:12,162   copying build/lib.linux-armv7l-3.9/mitre/data_processing/filtering.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:12,165   copying build/lib.linux-armv7l-3.9/mitre/data_processing/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:12,167   copying build/lib.linux-armv7l-3.9/mitre/data_processing/synthetic_data.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:12,169   copying build/lib.linux-armv7l-3.9/mitre/data_processing/transforms.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:12,173   copying build/lib.linux-armv7l-3.9/mitre/data_processing/crossvalidation.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:12,176   copying build/lib.linux-armv7l-3.9/mitre/key_comparison.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,179   copying build/lib.linux-armv7l-3.9/mitre/command_line.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,182   copying build/lib.linux-armv7l-3.9/mitre/template.html -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,187   copying build/lib.linux-armv7l-3.9/mitre/visualization.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,191   copying build/lib.linux-armv7l-3.9/mitre/logit_rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,196   creating build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,197   copying build/lib.linux-armv7l-3.9/mitre/trees/priors.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,200   copying build/lib.linux-armv7l-3.9/mitre/trees/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,203   copying build/lib.linux-armv7l-3.9/mitre/trees/utilities.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,207   copying build/lib.linux-armv7l-3.9/mitre/trees/simulators.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,432   copying build/lib.linux-armv7l-3.9/mitre/lambda_quick_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,436   copying build/lib.linux-armv7l-3.9/mitre/logit_rule_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,439   copying build/lib.linux-armv7l-3.9/mitre/test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,443   running install_egg_info
2021-07-12T09:38:12,453   Copying mitre.egg-info to build/bdist.linux-armv7l/wheel/mitre-0.9b1-py3.9.egg-info
2021-07-12T09:38:12,471   running install_scripts
2021-07-12T09:38:12,558   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-12T09:38:12,566   creating build/bdist.linux-armv7l/wheel/mitre-0.9b1.dist-info/WHEEL
2021-07-12T09:38:12,569   creating '/tmp/pip-wheel-wun8pybx/mitre-0.9b1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T09:38:12,637   adding 'efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:12,642   adding 'mitre/__init__.py'
2021-07-12T09:38:12,644   adding 'mitre/command_line.py'
2021-07-12T09:38:12,672   adding 'mitre/efficient_likelihoods.c'
2021-07-12T09:38:12,677   adding 'mitre/efficient_likelihoods.pyx'
2021-07-12T09:38:12,679   adding 'mitre/key_comparison.py'
2021-07-12T09:38:12,681   adding 'mitre/lambda_quick_test.py'
2021-07-12T09:38:12,682   adding 'mitre/logit_rule_test.py'
2021-07-12T09:38:12,690   adding 'mitre/logit_rules.py'
2021-07-12T09:38:12,692   adding 'mitre/logit_test.py'
2021-07-12T09:38:12,701   adding 'mitre/main.py'
2021-07-12T09:38:12,703   adding 'mitre/mvnpdf_cholesky.py'
2021-07-12T09:38:12,710   adding 'mitre/posterior.py'
2021-07-12T09:38:12,712   adding 'mitre/prior_by_primitive.py'
2021-07-12T09:38:12,714   adding 'mitre/quick_test.cfg'
2021-07-12T09:38:12,723   adding 'mitre/rules.py'
2021-07-12T09:38:12,729   adding 'mitre/template.html'
2021-07-12T09:38:12,731   adding 'mitre/test.py'
2021-07-12T09:38:12,733   adding 'mitre/visualization.py'
2021-07-12T09:38:12,736   adding 'mitre/comparison_methods/__init__.py'
2021-07-12T09:38:12,738   adding 'mitre/comparison_methods/sklearn_wrappers.py'
2021-07-12T09:38:12,741   adding 'mitre/data_processing/__init__.py'
2021-07-12T09:38:12,743   adding 'mitre/data_processing/crossvalidation.py'
2021-07-12T09:38:12,744   adding 'mitre/data_processing/data_processing.py'
2021-07-12T09:38:12,747   adding 'mitre/data_processing/filtering.py'
2021-07-12T09:38:12,749   adding 'mitre/data_processing/sequencing.py'
2021-07-12T09:38:12,751   adding 'mitre/data_processing/synthetic_data.py'
2021-07-12T09:38:12,753   adding 'mitre/data_processing/transforms.py'
2021-07-12T09:38:12,756   adding 'mitre/example_data/CITATIONS.txt'
2021-07-12T09:38:12,758   adding 'mitre/example_data/example_settings.cfg'
2021-07-12T09:38:12,761   adding 'mitre/example_data/bokulich/NOTE'
2021-07-12T09:38:13,277   adding 'mitre/example_data/bokulich/abundance.csv'
2021-07-12T09:38:13,581   adding 'mitre/example_data/bokulich/dada2_placements.csv'
2021-07-12T09:38:14,137   adding 'mitre/example_data/bokulich/placement.jplace'
2021-07-12T09:38:14,168   adding 'mitre/example_data/bokulich/sample_metadata.csv'
2021-07-12T09:38:14,171   adding 'mitre/example_data/bokulich/sample_metadata_no_repeats.csv'
2021-07-12T09:38:14,221   adding 'mitre/example_data/bokulich/seq_info.csv'
2021-07-12T09:38:14,408   adding 'mitre/example_data/bokulich/sequence_key.fa'
2021-07-12T09:38:14,415   adding 'mitre/example_data/bokulich/subject_data.csv'
2021-07-12T09:38:14,546   adding 'mitre/example_data/bokulich/taxaTable.csv'
2021-07-12T09:38:14,960   adding 'mitre/example_data/david/abundance.csv'
2021-07-12T09:38:15,029   adding 'mitre/example_data/david/david_long.cfg.lsf'
2021-07-12T09:38:15,096   adding 'mitre/example_data/david/mothur_placements.csv'
2021-07-12T09:38:16,756   adding 'mitre/example_data/david/placements.jplace'
2021-07-12T09:38:16,849   adding 'mitre/example_data/david/sample_metadata.csv'
2021-07-12T09:38:16,898   adding 'mitre/example_data/david/seq_info.csv'
2021-07-12T09:38:17,267   adding 'mitre/example_data/david/sequence_key.fa'
2021-07-12T09:38:17,293   adding 'mitre/example_data/david/subject_data.csv'
2021-07-12T09:38:17,424   adding 'mitre/example_data/david/taxaTable.csv'
2021-07-12T09:38:17,753   adding 'mitre/example_data/digiulio/abundance.csv'
2021-07-12T09:38:17,954   adding 'mitre/example_data/digiulio/dada2_placements.csv'
2021-07-12T09:38:18,259   adding 'mitre/example_data/digiulio/placement.jplace'
2021-07-12T09:38:18,276   adding 'mitre/example_data/digiulio/sample_metadata.csv'
2021-07-12T09:38:18,326   adding 'mitre/example_data/digiulio/seq_info.csv'
2021-07-12T09:38:18,473   adding 'mitre/example_data/digiulio/sequence_key.fa'
2021-07-12T09:38:18,481   adding 'mitre/example_data/digiulio/subject_data.csv'
2021-07-12T09:38:18,612   adding 'mitre/example_data/digiulio/taxaTable.csv'
2021-07-12T09:38:18,626   adding 'mitre/example_data/digiulio/test.cfg.lsf'
2021-07-12T09:38:18,628   adding 'mitre/example_data/karelia/README'
2021-07-12T09:38:19,305   adding 'mitre/example_data/karelia/abundance.csv'
2021-07-12T09:38:19,450   adding 'mitre/example_data/karelia/add_any_allergy_variables.py'
2021-07-12T09:38:19,711   adding 'mitre/example_data/karelia/dada2_placements.csv'
2021-07-12T09:38:20,167   adding 'mitre/example_data/karelia/placement.jplace'
2021-07-12T09:38:20,198   adding 'mitre/example_data/karelia/sample_data.csv'
2021-07-12T09:38:20,206   adding 'mitre/example_data/karelia/sample_metadata.csv'
2021-07-12T09:38:20,256   adding 'mitre/example_data/karelia/seq_info.csv'
2021-07-12T09:38:20,500   adding 'mitre/example_data/karelia/sequence_key.fa'
2021-07-12T09:38:20,511   adding 'mitre/example_data/karelia/subject_data.csv'
2021-07-12T09:38:20,514   adding 'mitre/example_data/karelia/subject_data_augmented.csv'
2021-07-12T09:38:20,644   adding 'mitre/example_data/karelia/taxaTable.csv'
2021-07-12T09:38:20,659   adding 'mitre/load_data/__init__.py'
2021-07-12T09:38:20,661   adding 'mitre/load_data/basic.py'
2021-07-12T09:38:20,663   adding 'mitre/load_data/distance_based.py'
2021-07-12T09:38:20,668   adding 'mitre/load_data/pplacer.py'
2021-07-12T09:38:20,670   adding 'mitre/load_data/taxonomy_annotation.py'
2021-07-12T09:38:20,673   adding 'mitre/trees/__init__.py'
2021-07-12T09:38:20,674   adding 'mitre/trees/priors.py'
2021-07-12T09:38:20,676   adding 'mitre/trees/simulators.py'
2021-07-12T09:38:20,677   adding 'mitre/trees/utilities.py'
2021-07-12T09:38:20,684   adding 'mitre-0.9b1.dist-info/LICENSE.txt'
2021-07-12T09:38:20,686   adding 'mitre-0.9b1.dist-info/METADATA'
2021-07-12T09:38:20,688   adding 'mitre-0.9b1.dist-info/WHEEL'
2021-07-12T09:38:20,689   adding 'mitre-0.9b1.dist-info/entry_points.txt'
2021-07-12T09:38:20,690   adding 'mitre-0.9b1.dist-info/top_level.txt'
2021-07-12T09:38:20,692   adding 'mitre-0.9b1.dist-info/RECORD'
2021-07-12T09:38:20,802   removing build/bdist.linux-armv7l/wheel
2021-07-12T09:38:21,002   Building wheel for mitre (setup.py): finished with status 'done'
2021-07-12T09:38:21,124   Created wheel for mitre: filename=mitre-0.9b1-cp39-cp39-linux_armv7l.whl size=9836439 sha256=91fb9c82f5fb8a587ad7052a90c4737999eeb2cad3362fa70cc4cde81e1e3fd9
2021-07-12T09:38:21,125   Stored in directory: /tmp/pip-ephem-wheel-cache-_avy23_q/wheels/0b/6e/7e/17bc23e15e41da383ad9d3b373a50ae164d5f5d13bca4212e1
2021-07-12T09:38:21,143 Successfully built mitre
2021-07-12T09:38:21,460 Removed build tracker: '/tmp/pip-req-tracker-95k3xjkk'