2021-07-12T09:37:50,079 Created temporary directory: /tmp/pip-ephem-wheel-cache-x6x0g6f2
2021-07-12T09:37:50,082 Created temporary directory: /tmp/pip-req-tracker-ywqu5vnw
2021-07-12T09:37:50,083 Initialized build tracking at /tmp/pip-req-tracker-ywqu5vnw
2021-07-12T09:37:50,083 Created build tracker: /tmp/pip-req-tracker-ywqu5vnw
2021-07-12T09:37:50,083 Entered build tracker: /tmp/pip-req-tracker-ywqu5vnw
2021-07-12T09:37:50,084 Created temporary directory: /tmp/pip-wheel-rqwz6xua
2021-07-12T09:37:50,114 1 location(s) to search for versions of mitre:
2021-07-12T09:37:50,114 * https://pypi.org/simple/mitre/
2021-07-12T09:37:50,115 Fetching project page and analyzing links: https://pypi.org/simple/mitre/
2021-07-12T09:37:50,115 Getting page https://pypi.org/simple/mitre/
2021-07-12T09:37:50,117 Found index url https://pypi.org/simple
2021-07-12T09:37:50,227   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/59/f6/233a0adc07eaf97d28545b7f42f8c3bd3a6cd6f98179e644e75257ea869b/mitre-0.9b1-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=6b5a7e496c46a53d5e2b2067f67b1f1d94075b525acea979a32cff11b15542d3 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,227   Found link https://files.pythonhosted.org/packages/e0/1b/72d62c2071b3918a614f0f5ad86bcc286aa7ebdf598541bef16a47805c3c/mitre-0.9b1.tar.gz#sha256=771589e92e4267a4e551dfd104be5d2cc2c6e5d56634bd29fefe937f976ccdaf (from https://pypi.org/simple/mitre/), version: 0.9b1
2021-07-12T09:37:50,228   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/47/14/38f5abf9aabdc12a77be89fbd69618cc833a9e9d4c2c81ba7b3d66f2babd/mitre-0.9b2-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=c58e141cf4c9e2f2755eaa54eb80a7fe8cceef243d154cb741688ac8d23c6116 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,228   Found link https://files.pythonhosted.org/packages/e2/be/1cbf4e1220038645f8a9bb4fa0d6aefb99aef36100b221a6c35ce117dce9/mitre-0.9b2.tar.gz#sha256=0bbb16e6d42ffb37620fd31ae547cf776d9e92aba926ff1c46eef6cca76f0fe1 (from https://pypi.org/simple/mitre/), version: 0.9b2
2021-07-12T09:37:50,229   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/07/a1/111c00ce0ab5508eb79f5375ca0fee326ce76b5800a53995018d7b80fb47/mitre-0.9b3-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3813a9da8f362e7918261410bd345fc19d2c0a3627b40fdb4b2d8ef2724e5579 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,229   Found link https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz#sha256=cbc0aaea05c289e3a56abf0c45506f663b7616e0138d28cd0725a1046ab61828 (from https://pypi.org/simple/mitre/), version: 0.9b3
2021-07-12T09:37:50,230   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/6a/24/8151e74639efbec4abc53d046b077bc30a8030f0a4ed05f341896d08310f/mitre-0.9b4-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=b2ec818db040005ea1253503e2c6f9597d4cbc0538c45da6c73ef5d074ee562c (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,230   Found link https://files.pythonhosted.org/packages/5a/b9/ef6ba6d02cb43873415935aac15ae0af557bc19c68670a4df756a2d19cc4/mitre-0.9b4.tar.gz#sha256=b1885e1c527afaf8f0b9d3bf8b92b84343db20919b61271665acea7f162c9871 (from https://pypi.org/simple/mitre/), version: 0.9b4
2021-07-12T09:37:50,230   Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_6_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/68/39/26cccdca887c89b2e366625711f0447880aa99e424e35fa0767f5f5e6005/mitre-0.9b5-cp27-cp27m-macosx_10_6_x86_64.whl#sha256=3e6023c4a9973a6d88196756aa0ebc54635513d0def0fdb91dd7a525b61eaf65 (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,231   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/c4/15/1344c018f16ea96f6563f2f783d516efb34ddc67d8b50e95ca55da75e7ce/mitre-0.9b5-py2.7-linux-x86_64.egg#sha256=71140d6aeedd1cea5694511d6b866689d44a247801853aa33a33d5be8f45bd0c (from https://pypi.org/simple/mitre/)
2021-07-12T09:37:50,231   Found link https://files.pythonhosted.org/packages/41/10/68a541b0441229176bfddd44dca10efb6f400b54c099f9645a3f8c1e73bc/mitre-0.9b5.tar.gz#sha256=80cc8624b88e26c34e2ff8023ee0eeb569fe731eb4df28354387dd8f46aca155 (from https://pypi.org/simple/mitre/), version: 0.9b5
2021-07-12T09:37:50,231   Found link https://files.pythonhosted.org/packages/66/c8/d9202a5a72c7d28913017486124273a60a53ab428c956c169784dccc6cb6/mitre-1.0b1.tar.gz#sha256=358fbd057f95068b2f6372af424a71fee16d6a5eb780201de6958bc2ec201dcf (from https://pypi.org/simple/mitre/), version: 1.0b1
2021-07-12T09:37:50,231 Skipping link: not a file: https://pypi.org/simple/mitre/
2021-07-12T09:37:50,233 Given no hashes to check 1 links for project 'mitre': discarding no candidates
2021-07-12T09:37:50,252 Collecting mitre==0.9b3
2021-07-12T09:37:50,254   Created temporary directory: /tmp/pip-unpack-ledp823k
2021-07-12T09:37:52,305   Downloading mitre-0.9b3.tar.gz (9.5 MB)
2021-07-12T09:37:57,883   Added mitre==0.9b3 from https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz#sha256=cbc0aaea05c289e3a56abf0c45506f663b7616e0138d28cd0725a1046ab61828 to build tracker '/tmp/pip-req-tracker-ywqu5vnw'
2021-07-12T09:37:57,885     Running setup.py (path:/tmp/pip-wheel-rqwz6xua/mitre_536e85695f3340a1a1cc94beb8514bc0/setup.py) egg_info for package mitre
2021-07-12T09:37:57,885     Created temporary directory: /tmp/pip-pip-egg-info-gs447wu_
2021-07-12T09:37:57,886     Running command python setup.py egg_info
2021-07-12T09:37:59,014     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-12T09:37:59,015       warnings.warn(
2021-07-12T09:37:59,117     /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.9beta3' to '0.9b3'
2021-07-12T09:37:59,117       warnings.warn(tmpl.format(**locals()))
2021-07-12T09:37:59,148     running egg_info
2021-07-12T09:37:59,150     creating /tmp/pip-pip-egg-info-gs447wu_/mitre.egg-info
2021-07-12T09:37:59,152     writing /tmp/pip-pip-egg-info-gs447wu_/mitre.egg-info/PKG-INFO
2021-07-12T09:37:59,155     writing dependency_links to /tmp/pip-pip-egg-info-gs447wu_/mitre.egg-info/dependency_links.txt
2021-07-12T09:37:59,156     writing entry points to /tmp/pip-pip-egg-info-gs447wu_/mitre.egg-info/entry_points.txt
2021-07-12T09:37:59,157     writing requirements to /tmp/pip-pip-egg-info-gs447wu_/mitre.egg-info/requires.txt
2021-07-12T09:37:59,158     writing top-level names to /tmp/pip-pip-egg-info-gs447wu_/mitre.egg-info/top_level.txt
2021-07-12T09:37:59,160     writing manifest file '/tmp/pip-pip-egg-info-gs447wu_/mitre.egg-info/SOURCES.txt'
2021-07-12T09:37:59,318     reading manifest file '/tmp/pip-pip-egg-info-gs447wu_/mitre.egg-info/SOURCES.txt'
2021-07-12T09:37:59,320     reading manifest template 'MANIFEST.in'
2021-07-12T09:37:59,348     adding license file 'LICENSE.txt'
2021-07-12T09:37:59,354     writing manifest file '/tmp/pip-pip-egg-info-gs447wu_/mitre.egg-info/SOURCES.txt'
2021-07-12T09:37:59,430   Source in /tmp/pip-wheel-rqwz6xua/mitre_536e85695f3340a1a1cc94beb8514bc0 has version 0.9b3, which satisfies requirement mitre==0.9b3 from https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz#sha256=cbc0aaea05c289e3a56abf0c45506f663b7616e0138d28cd0725a1046ab61828
2021-07-12T09:37:59,431   Removed mitre==0.9b3 from https://files.pythonhosted.org/packages/41/36/690c959ee7ca63b3c7703a4f0bd5cc6295b9628fa0667ca53f0a900a0e37/mitre-0.9b3.tar.gz#sha256=cbc0aaea05c289e3a56abf0c45506f663b7616e0138d28cd0725a1046ab61828 from build tracker '/tmp/pip-req-tracker-ywqu5vnw'
2021-07-12T09:37:59,436 Created temporary directory: /tmp/pip-unpack-2hyo4_f9
2021-07-12T09:37:59,436 Building wheels for collected packages: mitre
2021-07-12T09:37:59,440   Created temporary directory: /tmp/pip-wheel-qftmnv9a
2021-07-12T09:37:59,441   Building wheel for mitre (setup.py): started
2021-07-12T09:37:59,441   Destination directory: /tmp/pip-wheel-qftmnv9a
2021-07-12T09:37:59,441   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-rqwz6xua/mitre_536e85695f3340a1a1cc94beb8514bc0/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-rqwz6xua/mitre_536e85695f3340a1a1cc94beb8514bc0/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qftmnv9a
2021-07-12T09:38:00,554   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
2021-07-12T09:38:00,554     warnings.warn(
2021-07-12T09:38:00,659   /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:484: UserWarning: Normalizing '0.9beta3' to '0.9b3'
2021-07-12T09:38:00,659     warnings.warn(tmpl.format(**locals()))
2021-07-12T09:38:00,707   running bdist_wheel
2021-07-12T09:38:00,712   running build
2021-07-12T09:38:00,712   running build_py
2021-07-12T09:38:00,856   creating build
2021-07-12T09:38:00,857   creating build/lib.linux-armv7l-3.9
2021-07-12T09:38:00,857   creating build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,858   copying mitre/__init__.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,860   copying mitre/prior_by_primitive.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,863   copying mitre/key_comparison.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,864   copying mitre/main.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,868   copying mitre/logit_rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,872   copying mitre/posterior.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,875   copying mitre/visualization.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,877   copying mitre/rules.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,881   copying mitre/test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,883   copying mitre/mvnpdf_cholesky.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,885   copying mitre/logit_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,887   copying mitre/command_line.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,889   copying mitre/logit_rule_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,891   copying mitre/lambda_quick_test.py -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:00,893   creating build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,894   copying mitre/data_processing/__init__.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,896   copying mitre/data_processing/crossvalidation.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,898   copying mitre/data_processing/transforms.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,901   copying mitre/data_processing/filtering.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,903   copying mitre/data_processing/synthetic_data.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,905   copying mitre/data_processing/sequencing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,907   copying mitre/data_processing/data_processing.py -> build/lib.linux-armv7l-3.9/mitre/data_processing
2021-07-12T09:38:00,910   creating build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,911   copying mitre/load_data/__init__.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,913   copying mitre/load_data/distance_based.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,914   copying mitre/load_data/taxonomy_annotation.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,917   copying mitre/load_data/basic.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,920   copying mitre/load_data/pplacer.py -> build/lib.linux-armv7l-3.9/mitre/load_data
2021-07-12T09:38:00,924   creating build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,925   copying mitre/trees/__init__.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,928   copying mitre/trees/utilities.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,930   copying mitre/trees/simulators.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,933   copying mitre/trees/priors.py -> build/lib.linux-armv7l-3.9/mitre/trees
2021-07-12T09:38:00,936   creating build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:00,937   copying mitre/comparison_methods/__init__.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:00,941   copying mitre/comparison_methods/sklearn_wrappers.py -> build/lib.linux-armv7l-3.9/mitre/comparison_methods
2021-07-12T09:38:00,943   running egg_info
2021-07-12T09:38:00,962   writing mitre.egg-info/PKG-INFO
2021-07-12T09:38:00,964   writing dependency_links to mitre.egg-info/dependency_links.txt
2021-07-12T09:38:00,966   writing entry points to mitre.egg-info/entry_points.txt
2021-07-12T09:38:00,967   writing requirements to mitre.egg-info/requires.txt
2021-07-12T09:38:00,968   writing top-level names to mitre.egg-info/top_level.txt
2021-07-12T09:38:00,978   reading manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:00,982   reading manifest template 'MANIFEST.in'
2021-07-12T09:38:01,008   adding license file 'LICENSE.txt'
2021-07-12T09:38:01,016   writing manifest file 'mitre.egg-info/SOURCES.txt'
2021-07-12T09:38:01,025   copying mitre/efficient_likelihoods.c -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,036   copying mitre/efficient_likelihoods.pyx -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,038   copying mitre/quick_test.cfg -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,040   copying mitre/template.html -> build/lib.linux-armv7l-3.9/mitre
2021-07-12T09:38:01,044   creating build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:01,045   copying mitre/example_data/CITATIONS.txt -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:01,047   copying mitre/example_data/example_settings.cfg -> build/lib.linux-armv7l-3.9/mitre/example_data
2021-07-12T09:38:01,050   creating build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,050   copying mitre/example_data/bokulich/NOTE -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,053   copying mitre/example_data/bokulich/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,419   copying mitre/example_data/bokulich/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,449   copying mitre/example_data/bokulich/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,534   copying mitre/example_data/bokulich/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,538   copying mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,543   copying mitre/example_data/bokulich/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,874   copying mitre/example_data/bokulich/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,918   copying mitre/example_data/bokulich/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:01,923   copying mitre/example_data/bokulich/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/bokulich
2021-07-12T09:38:02,010   creating build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,011   copying mitre/example_data/david/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,269   copying mitre/example_data/david/david_long.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,269   copying mitre/example_data/david/mothur_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,306   copying mitre/example_data/david/placements.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,577   copying mitre/example_data/david/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,584   copying mitre/example_data/david/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,608   copying mitre/example_data/david/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,678   copying mitre/example_data/david/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,680   copying mitre/example_data/david/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/david
2021-07-12T09:38:02,719   creating build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:02,720   copying mitre/example_data/digiulio/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:02,856   copying mitre/example_data/digiulio/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:02,884   copying mitre/example_data/digiulio/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:02,926   copying mitre/example_data/digiulio/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:02,929   copying mitre/example_data/digiulio/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:02,941   copying mitre/example_data/digiulio/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:02,962   copying mitre/example_data/digiulio/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:02,964   copying mitre/example_data/digiulio/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,021   copying mitre/example_data/digiulio/test.cfg.lsf -> build/lib.linux-armv7l-3.9/mitre/example_data/digiulio
2021-07-12T09:38:03,023   creating build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,024   copying mitre/example_data/karelia/README -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,026   copying mitre/example_data/karelia/abundance.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,387   copying mitre/example_data/karelia/add_any_allergy_variables.py -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,390   copying mitre/example_data/karelia/dada2_placements.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,425   copying mitre/example_data/karelia/placement.jplace -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,488   copying mitre/example_data/karelia/sample_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,491   copying mitre/example_data/karelia/sample_metadata.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,495   copying mitre/example_data/karelia/seq_info.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,511   copying mitre/example_data/karelia/sequence_key.fa -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,542   copying mitre/example_data/karelia/subject_data.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,546   copying mitre/example_data/karelia/subject_data_augmented.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,549   copying mitre/example_data/karelia/taxaTable.csv -> build/lib.linux-armv7l-3.9/mitre/example_data/karelia
2021-07-12T09:38:03,599   running build_ext
2021-07-12T09:38:03,915   building 'efficient_likelihoods' extension
2021-07-12T09:38:03,916   creating build/temp.linux-armv7l-3.9
2021-07-12T09:38:03,916   creating build/temp.linux-armv7l-3.9/mitre
2021-07-12T09:38:03,917   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c mitre/efficient_likelihoods.c -o build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o
2021-07-12T09:38:04,292   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:38:04,292                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:38:04,292                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:04,292                    from mitre/efficient_likelihoods.c:274:
2021-07-12T09:38:04,292   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:38:04,293      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:38:04,293         |  ^~~~~~~
2021-07-12T09:38:04,419   mitre/efficient_likelihoods.c: In function ‘__Pyx_ParseOptionalKeywords’:
2021-07-12T09:38:04,422   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,423    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,423         |                     ^
2021-07-12T09:38:04,423   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,423                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,423                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,423   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,424     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,424         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,428   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,428    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,428         |                     ^
2021-07-12T09:38:04,428   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,428                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,428                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,428   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:04,429     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:04,429         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,432   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,433    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,433         |                     ^
2021-07-12T09:38:04,433   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,433                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,433                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,433   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,433     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,433         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,437   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,437    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,437         |                     ^
2021-07-12T09:38:04,437   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,438                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,438                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,438   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,438     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,438         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,442   mitre/efficient_likelihoods.c:6070:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,442    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,442         |                     ^
2021-07-12T09:38:04,442   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,442                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,442                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,442   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:04,443     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:04,443         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,446   mitre/efficient_likelihoods.c:6070:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,447    6070 |                     (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,447         |                     ^
2021-07-12T09:38:04,447   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,447                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,447                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,447   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,447     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,447         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,452   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,453    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,453         |                         ^
2021-07-12T09:38:04,453   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,453                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,453                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,453   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,453     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,453         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,457   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,457    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,457         |                         ^
2021-07-12T09:38:04,457   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,458                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,458                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,458   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:04,458     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:04,458         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,462   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,462    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,462         |                         ^
2021-07-12T09:38:04,462   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,462                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,462                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,462   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,463     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,463         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,466   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,467    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,467         |                         ^
2021-07-12T09:38:04,467   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,467                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,467                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,467   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,467     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,467         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,471   mitre/efficient_likelihoods.c:6086:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,471    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,471         |                         ^
2021-07-12T09:38:04,472   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,472                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,472                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,472   /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
2021-07-12T09:38:04,472     580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
2021-07-12T09:38:04,472         |                                             ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,476   mitre/efficient_likelihoods.c:6086:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
2021-07-12T09:38:04,476    6086 |                         (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
2021-07-12T09:38:04,476         |                         ^
2021-07-12T09:38:04,476   In file included from /usr/include/python3.9/unicodeobject.h:1026,
2021-07-12T09:38:04,476                    from /usr/include/python3.9/Python.h:97,
2021-07-12T09:38:04,476                    from mitre/efficient_likelihoods.c:12:
2021-07-12T09:38:04,477   /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
2021-07-12T09:38:04,477     446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
2021-07-12T09:38:04,477         |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:04,686   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21,
2021-07-12T09:38:04,686                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:04,686                    from mitre/efficient_likelihoods.c:274:
2021-07-12T09:38:04,686   At top level:
2021-07-12T09:38:04,686   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1464:1: warning: ‘_import_array’ defined but not used [-Wunused-function]
2021-07-12T09:38:04,687    1464 | _import_array(void)
2021-07-12T09:38:04,687         | ^~~~~~~~~~~~~
2021-07-12T09:38:10,362   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/mitre/efficient_likelihoods.o -o build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:10,494   installing to build/bdist.linux-armv7l/wheel
2021-07-12T09:38:10,494   running install
2021-07-12T09:38:10,496   running install_lib
2021-07-12T09:38:10,500   creating build/bdist.linux-armv7l
2021-07-12T09:38:10,500   creating build/bdist.linux-armv7l/wheel
2021-07-12T09:38:10,503   creating build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:10,504   copying build/lib.linux-armv7l-3.9/mitre/__init__.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:10,506   copying build/lib.linux-armv7l-3.9/mitre/prior_by_primitive.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:10,509   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.c -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:10,528   creating build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:10,529   copying build/lib.linux-armv7l-3.9/mitre/data_processing/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:10,534   copying build/lib.linux-armv7l-3.9/mitre/data_processing/crossvalidation.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:10,538   copying build/lib.linux-armv7l-3.9/mitre/data_processing/transforms.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:10,542   copying build/lib.linux-armv7l-3.9/mitre/data_processing/filtering.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:10,546   copying build/lib.linux-armv7l-3.9/mitre/data_processing/synthetic_data.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:10,549   copying build/lib.linux-armv7l-3.9/mitre/data_processing/sequencing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:10,553   copying build/lib.linux-armv7l-3.9/mitre/data_processing/data_processing.py -> build/bdist.linux-armv7l/wheel/mitre/data_processing
2021-07-12T09:38:10,556   copying build/lib.linux-armv7l-3.9/mitre/key_comparison.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:10,558   copying build/lib.linux-armv7l-3.9/mitre/main.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:10,565   creating build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:10,566   copying build/lib.linux-armv7l-3.9/mitre/example_data/example_settings.cfg -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:10,568   copying build/lib.linux-armv7l-3.9/mitre/example_data/CITATIONS.txt -> build/bdist.linux-armv7l/wheel/mitre/example_data
2021-07-12T09:38:10,571   creating build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,572   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,680   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata_no_repeats.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,683   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,755   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,800   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,832   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,841   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,843   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,846   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/NOTE -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:10,848   copying build/lib.linux-armv7l-3.9/mitre/example_data/bokulich/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/bokulich
2021-07-12T09:38:11,120   creating build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,121   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/david_long.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,122   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/placements.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,419   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/mothur_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,464   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,542   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,582   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,591   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,593   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,596   copying build/lib.linux-armv7l-3.9/mitre/example_data/david/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/david
2021-07-12T09:38:11,990   creating build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:11,992   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,028   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,049   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,086   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,114   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,126   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/test.cfg.lsf -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,128   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,130   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,132   copying build/lib.linux-armv7l-3.9/mitre/example_data/digiulio/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/digiulio
2021-07-12T09:38:12,264   creating build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,265   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/placement.jplace -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,316   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/add_any_allergy_variables.py -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,317   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sequence_key.fa -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,340   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/taxaTable.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,375   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data_augmented.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,378   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/dada2_placements.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,408   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,412   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/seq_info.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,424   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/README -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,426   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/subject_data.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,430   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/sample_metadata.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,434   copying build/lib.linux-armv7l-3.9/mitre/example_data/karelia/abundance.csv -> build/bdist.linux-armv7l/wheel/mitre/example_data/karelia
2021-07-12T09:38:12,852   copying build/lib.linux-armv7l-3.9/mitre/logit_rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,862   copying build/lib.linux-armv7l-3.9/mitre/quick_test.cfg -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,872   creating build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:12,874   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:12,877   copying build/lib.linux-armv7l-3.9/mitre/comparison_methods/sklearn_wrappers.py -> build/bdist.linux-armv7l/wheel/mitre/comparison_methods
2021-07-12T09:38:12,880   copying build/lib.linux-armv7l-3.9/mitre/posterior.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,885   copying build/lib.linux-armv7l-3.9/mitre/visualization.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,888   copying build/lib.linux-armv7l-3.9/mitre/rules.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,894   copying build/lib.linux-armv7l-3.9/mitre/test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,896   creating build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,897   copying build/lib.linux-armv7l-3.9/mitre/trees/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,899   copying build/lib.linux-armv7l-3.9/mitre/trees/utilities.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,901   copying build/lib.linux-armv7l-3.9/mitre/trees/simulators.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,903   copying build/lib.linux-armv7l-3.9/mitre/trees/priors.py -> build/bdist.linux-armv7l/wheel/mitre/trees
2021-07-12T09:38:12,905   copying build/lib.linux-armv7l-3.9/mitre/mvnpdf_cholesky.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,907   copying build/lib.linux-armv7l-3.9/mitre/efficient_likelihoods.pyx -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,910   copying build/lib.linux-armv7l-3.9/mitre/logit_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,912   copying build/lib.linux-armv7l-3.9/mitre/template.html -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,918   copying build/lib.linux-armv7l-3.9/mitre/command_line.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,922   creating build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:12,923   copying build/lib.linux-armv7l-3.9/mitre/load_data/__init__.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:12,925   copying build/lib.linux-armv7l-3.9/mitre/load_data/distance_based.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:12,927   copying build/lib.linux-armv7l-3.9/mitre/load_data/taxonomy_annotation.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:12,930   copying build/lib.linux-armv7l-3.9/mitre/load_data/basic.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:12,932   copying build/lib.linux-armv7l-3.9/mitre/load_data/pplacer.py -> build/bdist.linux-armv7l/wheel/mitre/load_data
2021-07-12T09:38:12,936   copying build/lib.linux-armv7l-3.9/mitre/logit_rule_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,938   copying build/lib.linux-armv7l-3.9/mitre/lambda_quick_test.py -> build/bdist.linux-armv7l/wheel/mitre
2021-07-12T09:38:12,940   copying build/lib.linux-armv7l-3.9/efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-12T09:38:12,950   running install_egg_info
2021-07-12T09:38:12,962   Copying mitre.egg-info to build/bdist.linux-armv7l/wheel/mitre-0.9b3-py3.9.egg-info
2021-07-12T09:38:12,978   running install_scripts
2021-07-12T09:38:13,087   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-12T09:38:13,093   creating build/bdist.linux-armv7l/wheel/mitre-0.9b3.dist-info/WHEEL
2021-07-12T09:38:13,096   creating '/tmp/pip-wheel-qftmnv9a/mitre-0.9b3-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T09:38:13,164   adding 'efficient_likelihoods.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:13,169   adding 'mitre/__init__.py'
2021-07-12T09:38:13,170   adding 'mitre/command_line.py'
2021-07-12T09:38:13,198   adding 'mitre/efficient_likelihoods.c'
2021-07-12T09:38:13,203   adding 'mitre/efficient_likelihoods.pyx'
2021-07-12T09:38:13,204   adding 'mitre/key_comparison.py'
2021-07-12T09:38:13,205   adding 'mitre/lambda_quick_test.py'
2021-07-12T09:38:13,207   adding 'mitre/logit_rule_test.py'
2021-07-12T09:38:13,214   adding 'mitre/logit_rules.py'
2021-07-12T09:38:13,215   adding 'mitre/logit_test.py'
2021-07-12T09:38:13,223   adding 'mitre/main.py'
2021-07-12T09:38:13,225   adding 'mitre/mvnpdf_cholesky.py'
2021-07-12T09:38:13,231   adding 'mitre/posterior.py'
2021-07-12T09:38:13,232   adding 'mitre/prior_by_primitive.py'
2021-07-12T09:38:13,234   adding 'mitre/quick_test.cfg'
2021-07-12T09:38:13,241   adding 'mitre/rules.py'
2021-07-12T09:38:13,247   adding 'mitre/template.html'
2021-07-12T09:38:13,248   adding 'mitre/test.py'
2021-07-12T09:38:13,250   adding 'mitre/visualization.py'
2021-07-12T09:38:13,252   adding 'mitre/comparison_methods/__init__.py'
2021-07-12T09:38:13,253   adding 'mitre/comparison_methods/sklearn_wrappers.py'
2021-07-12T09:38:13,255   adding 'mitre/data_processing/__init__.py'
2021-07-12T09:38:13,257   adding 'mitre/data_processing/crossvalidation.py'
2021-07-12T09:38:13,258   adding 'mitre/data_processing/data_processing.py'
2021-07-12T09:38:13,260   adding 'mitre/data_processing/filtering.py'
2021-07-12T09:38:13,262   adding 'mitre/data_processing/sequencing.py'
2021-07-12T09:38:13,263   adding 'mitre/data_processing/synthetic_data.py'
2021-07-12T09:38:13,265   adding 'mitre/data_processing/transforms.py'
2021-07-12T09:38:13,267   adding 'mitre/example_data/CITATIONS.txt'
2021-07-12T09:38:13,268   adding 'mitre/example_data/example_settings.cfg'
2021-07-12T09:38:13,270   adding 'mitre/example_data/bokulich/NOTE'
2021-07-12T09:38:13,764   adding 'mitre/example_data/bokulich/abundance.csv'
2021-07-12T09:38:14,071   adding 'mitre/example_data/bokulich/dada2_placements.csv'
2021-07-12T09:38:14,633   adding 'mitre/example_data/bokulich/placement.jplace'
2021-07-12T09:38:14,663   adding 'mitre/example_data/bokulich/sample_metadata.csv'
2021-07-12T09:38:14,666   adding 'mitre/example_data/bokulich/sample_metadata_no_repeats.csv'
2021-07-12T09:38:14,716   adding 'mitre/example_data/bokulich/seq_info.csv'
2021-07-12T09:38:14,906   adding 'mitre/example_data/bokulich/sequence_key.fa'
2021-07-12T09:38:14,913   adding 'mitre/example_data/bokulich/subject_data.csv'
2021-07-12T09:38:15,045   adding 'mitre/example_data/bokulich/taxaTable.csv'
2021-07-12T09:38:15,460   adding 'mitre/example_data/david/abundance.csv'
2021-07-12T09:38:15,529   adding 'mitre/example_data/david/david_long.cfg.lsf'
2021-07-12T09:38:15,595   adding 'mitre/example_data/david/mothur_placements.csv'
2021-07-12T09:38:17,278   adding 'mitre/example_data/david/placements.jplace'
2021-07-12T09:38:17,371   adding 'mitre/example_data/david/sample_metadata.csv'
2021-07-12T09:38:17,420   adding 'mitre/example_data/david/seq_info.csv'
2021-07-12T09:38:17,797   adding 'mitre/example_data/david/sequence_key.fa'
2021-07-12T09:38:17,824   adding 'mitre/example_data/david/subject_data.csv'
2021-07-12T09:38:17,955   adding 'mitre/example_data/david/taxaTable.csv'
2021-07-12T09:38:18,290   adding 'mitre/example_data/digiulio/abundance.csv'
2021-07-12T09:38:18,495   adding 'mitre/example_data/digiulio/dada2_placements.csv'
2021-07-12T09:38:18,803   adding 'mitre/example_data/digiulio/placement.jplace'
2021-07-12T09:38:18,820   adding 'mitre/example_data/digiulio/sample_metadata.csv'
2021-07-12T09:38:18,870   adding 'mitre/example_data/digiulio/seq_info.csv'
2021-07-12T09:38:19,021   adding 'mitre/example_data/digiulio/sequence_key.fa'
2021-07-12T09:38:19,029   adding 'mitre/example_data/digiulio/subject_data.csv'
2021-07-12T09:38:19,160   adding 'mitre/example_data/digiulio/taxaTable.csv'
2021-07-12T09:38:19,174   adding 'mitre/example_data/digiulio/test.cfg.lsf'
2021-07-12T09:38:19,176   adding 'mitre/example_data/karelia/README'
2021-07-12T09:38:19,860   adding 'mitre/example_data/karelia/abundance.csv'
2021-07-12T09:38:20,004   adding 'mitre/example_data/karelia/add_any_allergy_variables.py'
2021-07-12T09:38:20,270   adding 'mitre/example_data/karelia/dada2_placements.csv'
2021-07-12T09:38:20,732   adding 'mitre/example_data/karelia/placement.jplace'
2021-07-12T09:38:20,762   adding 'mitre/example_data/karelia/sample_data.csv'
2021-07-12T09:38:20,770   adding 'mitre/example_data/karelia/sample_metadata.csv'
2021-07-12T09:38:20,820   adding 'mitre/example_data/karelia/seq_info.csv'
2021-07-12T09:38:21,070   adding 'mitre/example_data/karelia/sequence_key.fa'
2021-07-12T09:38:21,081   adding 'mitre/example_data/karelia/subject_data.csv'
2021-07-12T09:38:21,083   adding 'mitre/example_data/karelia/subject_data_augmented.csv'
2021-07-12T09:38:21,215   adding 'mitre/example_data/karelia/taxaTable.csv'
2021-07-12T09:38:21,230   adding 'mitre/load_data/__init__.py'
2021-07-12T09:38:21,231   adding 'mitre/load_data/basic.py'
2021-07-12T09:38:21,233   adding 'mitre/load_data/distance_based.py'
2021-07-12T09:38:21,237   adding 'mitre/load_data/pplacer.py'
2021-07-12T09:38:21,239   adding 'mitre/load_data/taxonomy_annotation.py'
2021-07-12T09:38:21,241   adding 'mitre/trees/__init__.py'
2021-07-12T09:38:21,242   adding 'mitre/trees/priors.py'
2021-07-12T09:38:21,244   adding 'mitre/trees/simulators.py'
2021-07-12T09:38:21,245   adding 'mitre/trees/utilities.py'
2021-07-12T09:38:21,252   adding 'mitre-0.9b3.dist-info/LICENSE.txt'
2021-07-12T09:38:21,254   adding 'mitre-0.9b3.dist-info/METADATA'
2021-07-12T09:38:21,255   adding 'mitre-0.9b3.dist-info/WHEEL'
2021-07-12T09:38:21,256   adding 'mitre-0.9b3.dist-info/entry_points.txt'
2021-07-12T09:38:21,257   adding 'mitre-0.9b3.dist-info/top_level.txt'
2021-07-12T09:38:21,258   adding 'mitre-0.9b3.dist-info/RECORD'
2021-07-12T09:38:21,481   removing build/bdist.linux-armv7l/wheel
2021-07-12T09:38:21,673   Building wheel for mitre (setup.py): finished with status 'done'
2021-07-12T09:38:21,797   Created wheel for mitre: filename=mitre-0.9b3-cp39-cp39-linux_armv7l.whl size=9836423 sha256=277d37bb3170a42acdbc123b2db9ed311c3eb9d6dfc9b3a0f27180aa1feb8e20
2021-07-12T09:38:21,798   Stored in directory: /tmp/pip-ephem-wheel-cache-x6x0g6f2/wheels/dd/02/fc/8e7113d9deec27a72be0485fd7ff26cd58c5f20c36507a9fe5
2021-07-12T09:38:21,816 Successfully built mitre
2021-07-12T09:38:22,095 Removed build tracker: '/tmp/pip-req-tracker-ywqu5vnw'