2021-07-12T09:37:28,102 Created temporary directory: /tmp/pip-ephem-wheel-cache-rsfmezje
2021-07-12T09:37:28,105 Created temporary directory: /tmp/pip-req-tracker-kper2bwi
2021-07-12T09:37:28,106 Initialized build tracking at /tmp/pip-req-tracker-kper2bwi
2021-07-12T09:37:28,106 Created build tracker: /tmp/pip-req-tracker-kper2bwi
2021-07-12T09:37:28,106 Entered build tracker: /tmp/pip-req-tracker-kper2bwi
2021-07-12T09:37:28,107 Created temporary directory: /tmp/pip-wheel-hcxah224
2021-07-12T09:37:28,137 1 location(s) to search for versions of centrosome:
2021-07-12T09:37:28,137 * https://pypi.org/simple/centrosome/
2021-07-12T09:37:28,137 Fetching project page and analyzing links: https://pypi.org/simple/centrosome/
2021-07-12T09:37:28,138 Getting page https://pypi.org/simple/centrosome/
2021-07-12T09:37:28,139 Found index url https://pypi.org/simple
2021-07-12T09:37:28,347   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ef/32/0ebe5dd08e33dcddbf5acc9458f73fbfacbf0b1a86b1a02bc5600ea1ecb3/centrosome-1.0.1-cp27-none-macosx_10_10_x86_64.whl#sha256=82e6f56ba6a494bf9e9094a6a1e6a4a399b0ad83194d6820903899dc1f7bf223 (from https://pypi.org/simple/centrosome/)
2021-07-12T09:37:28,347   Found link https://files.pythonhosted.org/packages/d5/5b/39c53336367d2e76ef3e3698d1864f29d9e3f71e11fa6e44edb34f80ee7e/centrosome-1.0.1.tar.gz#sha256=1e6ad1eb53e5ffc911db3d89d1fa69e6a9b94602c378e0be56836a9f3c0d1f98 (from https://pypi.org/simple/centrosome/), version: 1.0.1
2021-07-12T09:37:28,348   Skipping link: none of the wheel's tags (cp27-none-macosx_10_10_intel) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/fb/5c/9d92237bfe242d4407c5e6129e2e7c3467e3dd90e81f1a4e53708638b42d/centrosome-1.0.2-cp27-none-macosx_10_10_intel.whl#sha256=420875a01d797fe1497368c5fca837dbbe38b31c12a9288ea548c2d8596cd942 (from https://pypi.org/simple/centrosome/)
2021-07-12T09:37:28,348   Found link https://files.pythonhosted.org/packages/53/a1/c0ddccf5afab91da1d244230d97e033e8ba46a6f8ffdabb5cf787cbd7c46/centrosome-1.0.2.tar.gz#sha256=f2ca282de415e3c5051456b83cfe2defb9cd04299cebe3af86820ffea46567ac (from https://pypi.org/simple/centrosome/), version: 1.0.2
2021-07-12T09:37:28,348   Found link https://files.pythonhosted.org/packages/1e/35/029b29583069050f7102777139c26f1c956684ee3cf5ff5be677ca567e4b/centrosome-1.0.3.tar.gz#sha256=852910ae30baae1e590f5db11385801156b3cbb9dfd5b413ffca73cc986a878d (from https://pypi.org/simple/centrosome/), version: 1.0.3
2021-07-12T09:37:28,349   Found link https://files.pythonhosted.org/packages/d5/06/7b563c0df0b04797b6003313ee76800ee03188d9caa40e1d2c22336c90f1/centrosome-1.0.4.tar.gz#sha256=e7a952e427f8cccb16e5ba7fe71f6f28dc242ca0b96b5bd83399928cb55530e3 (from https://pypi.org/simple/centrosome/), version: 1.0.4
2021-07-12T09:37:28,349   Found link https://files.pythonhosted.org/packages/fc/75/8bd2734c337bccbc5bbc863cf8ec262abedd3bb1173136cb168ae07312ca/centrosome-1.0.5.tar.gz#sha256=45aa7c64117058a81308b08a9d35b54e64ed4a0ac5325c9e880fe85fff5cd535 (from https://pypi.org/simple/centrosome/), version: 1.0.5
2021-07-12T09:37:28,349   Found link https://files.pythonhosted.org/packages/2e/0d/b02aec55505c9c6bf086ae925c84cac69a6d8e5d4ecc43439fcab1a237db/centrosome-1.0.6.tar.gz#sha256=474b9d992458186f1da038fe43da9997a63ebb11cc5c9383cdeae41f528d6552 (from https://pypi.org/simple/centrosome/), version: 1.0.6
2021-07-12T09:37:28,349   Found link https://files.pythonhosted.org/packages/15/72/ad891b9111e74d85dc9245c34e01817ded2dfc5c3be25dd9037b100ff1ae/centrosome-1.0.7.tar.gz#sha256=659d8ab5fb207d870832df9d5a2c844be7a9d1259fabad0a2b2b14250b505de2 (from https://pypi.org/simple/centrosome/), version: 1.0.7
2021-07-12T09:37:28,350   Found link https://files.pythonhosted.org/packages/bf/43/0f7a68d756c9f5667f61d12d0b8a6016f8b0b857204b8ff83ebef973ebc8/centrosome-1.0.8.tar.gz#sha256=47dc3abcb9f4b184ad9f875bf854d3fe221628de3e5999410dba66d3873f11f6 (from https://pypi.org/simple/centrosome/), version: 1.0.8
2021-07-12T09:37:28,350   Found link https://files.pythonhosted.org/packages/eb/8a/318cf9ffff05c494d490dd04db77a7646a361b69ec039f23b9251c10b725/centrosome-1.0.9.tar.gz#sha256=114fa352c11d601c6d8c422f001c95e91cdff2335a4254c79ff7c8d0bd66afd7 (from https://pypi.org/simple/centrosome/), version: 1.0.9
2021-07-12T09:37:28,350   Found link https://files.pythonhosted.org/packages/7a/d5/cd779a0a3f70c7f343a499d56a93cd4bed8e3cac857279d48db426f3adb1/centrosome-1.1.2.tar.gz#sha256=021a8c68ff5e03ce47d33e8e9aa61e342834c02225688d63fda4b8415acb4a32 (from https://pypi.org/simple/centrosome/), version: 1.1.2
2021-07-12T09:37:28,351   Found link https://files.pythonhosted.org/packages/7b/1e/e7471f3ab26ee17ada5fb13c51b3cd368f2a716bec576568884fbea7ac42/centrosome-1.1.4.tar.gz#sha256=04d56a25f2c5420cc8b5cebcc60f687f266742083211376e2d70b69b5fa0afb0 (from https://pypi.org/simple/centrosome/), version: 1.1.4
2021-07-12T09:37:28,351   Found link https://files.pythonhosted.org/packages/a3/a9/2ff82b223acda9404ef1d0c2aace37fde9c7266e80e1e2e959da60da8012/centrosome-1.1.5.tar.gz#sha256=b1dfbe45c3755837a350a855f47123ed306fdd306726fd0c69bb0900b38a5b4c (from https://pypi.org/simple/centrosome/), version: 1.1.5
2021-07-12T09:37:28,351   Found link https://files.pythonhosted.org/packages/8e/4d/246b4e375be61fb6a51a4511d749cb5aa845dc5e61d799eece6a1a87f7d1/centrosome-1.1.6.tar.gz#sha256=b253df00a19f51887de660033a28cac573930cf24b59a43599d9f4d60e12e9e8 (from https://pypi.org/simple/centrosome/), version: 1.1.6
2021-07-12T09:37:28,352   Skipping link: none of the wheel's tags (cp37-cp37m-macosx_10_14_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/87/07/1368796bbf9e61e307e73c8370a6eab1c76b23d2c0e66594a3b6b11575d5/centrosome-1.1.7-cp37-cp37m-macosx_10_14_x86_64.whl#sha256=18df933288b1728b5e26a4f481689d8dbc7b043c70f56853f1f6c9de53366fca (from https://pypi.org/simple/centrosome/)
2021-07-12T09:37:28,352   Found link https://files.pythonhosted.org/packages/ac/01/7f46b624571a67082e8db4c2441609eefe05c655b3baca71316025122d95/centrosome-1.1.7.tar.gz#sha256=d82d14e0488ef93ef7872e73306d7481d605ca7eb46ce529d2d08d45783fce17 (from https://pypi.org/simple/centrosome/), version: 1.1.7
2021-07-12T09:37:28,352   Skipping link: none of the wheel's tags (cp38-cp38-macosx_10_15_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/ea/d8/7cda6ed98b8a45f79cba773ec6f9fd0034dc30596b518f76e34f38b05788/centrosome-1.2.0-cp38-cp38-macosx_10_15_x86_64.whl#sha256=06824e698104afabfd9f41e7ac479f26543fe55f1859d2540779621edf050d16 (from https://pypi.org/simple/centrosome/)
2021-07-12T09:37:28,353   Found link https://files.pythonhosted.org/packages/61/c7/e1a31b6a092a5b91952fe96801b2d3167fcb3bad8386c023dd83de4c4ab8/centrosome-1.2.0.tar.gz#sha256=c0b834e2e749c586077af95ab307c15d9bf498c4667f6031b0915efb94674bff (from https://pypi.org/simple/centrosome/), version: 1.2.0
2021-07-12T09:37:28,353 Skipping link: not a file: https://pypi.org/simple/centrosome/
2021-07-12T09:37:28,356 Given no hashes to check 1 links for project 'centrosome': discarding no candidates
2021-07-12T09:37:28,378 Collecting centrosome==1.0.8
2021-07-12T09:37:28,379   Created temporary directory: /tmp/pip-unpack-rtl7gr17
2021-07-12T09:37:28,957   Downloading centrosome-1.0.8.tar.gz (570 kB)
2021-07-12T09:37:29,322   Added centrosome==1.0.8 from https://files.pythonhosted.org/packages/bf/43/0f7a68d756c9f5667f61d12d0b8a6016f8b0b857204b8ff83ebef973ebc8/centrosome-1.0.8.tar.gz#sha256=47dc3abcb9f4b184ad9f875bf854d3fe221628de3e5999410dba66d3873f11f6 to build tracker '/tmp/pip-req-tracker-kper2bwi'
2021-07-12T09:37:29,323     Running setup.py (path:/tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8/setup.py) egg_info for package centrosome
2021-07-12T09:37:29,323     Created temporary directory: /tmp/pip-pip-egg-info-2l4ob6bv
2021-07-12T09:37:29,324     Running command python setup.py egg_info
2021-07-12T09:37:31,316     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8/centrosome/_fastemd.pyx
2021-07-12T09:37:31,316       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T09:37:34,194     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8/centrosome/_convex_hull.pyx
2021-07-12T09:37:34,194       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T09:37:35,907     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8/centrosome/_cpmorphology2.pyx
2021-07-12T09:37:35,907       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T09:37:38,444     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8/centrosome/_filter.pyx
2021-07-12T09:37:38,444       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T09:37:41,041     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8/centrosome/_lapjv.pyx
2021-07-12T09:37:41,042       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T09:37:42,492     warning: centrosome/_lapjv.pyx:280:12: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-12T09:37:42,492     warning: centrosome/_lapjv.pyx:280:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line.
2021-07-12T09:37:42,951     /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8/centrosome/_propagate.pyx
2021-07-12T09:37:42,951       tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T09:37:46,749     Compiling centrosome/_propagate.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T09:37:46,749     Compiling centrosome/_convex_hull.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T09:37:46,750     Compiling centrosome/_cpmorphology2.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T09:37:46,750     Compiling centrosome/_fastemd.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libcpp/vector.pxd.
2021-07-12T09:37:46,750     Compiling centrosome/_filter.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T09:37:46,750     Compiling centrosome/_lapjv.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T09:37:46,750     Compiling centrosome/_propagate.pyx because it depends on /usr/local/lib/python3.9/dist-packages/Cython/Includes/libc/string.pxd.
2021-07-12T09:37:46,751     [1/7] Cythonizing centrosome/_fastemd.pyx
2021-07-12T09:37:46,751     [2/7] Cythonizing centrosome/_convex_hull.pyx
2021-07-12T09:37:46,751     [3/7] Cythonizing centrosome/_cpmorphology2.pyx
2021-07-12T09:37:46,751     [4/7] Cythonizing centrosome/_filter.pyx
2021-07-12T09:37:46,751     [5/7] Cythonizing centrosome/_lapjv.pyx
2021-07-12T09:37:46,751     [6/7] Cythonizing centrosome/_propagate.pyx
2021-07-12T09:37:46,751     [7/7] Cythonizing centrosome/_propagate.pyx
2021-07-12T09:37:47,190     running egg_info
2021-07-12T09:37:47,193     creating /tmp/pip-pip-egg-info-2l4ob6bv/centrosome.egg-info
2021-07-12T09:37:47,194     writing /tmp/pip-pip-egg-info-2l4ob6bv/centrosome.egg-info/PKG-INFO
2021-07-12T09:37:47,196     writing dependency_links to /tmp/pip-pip-egg-info-2l4ob6bv/centrosome.egg-info/dependency_links.txt
2021-07-12T09:37:47,198     writing requirements to /tmp/pip-pip-egg-info-2l4ob6bv/centrosome.egg-info/requires.txt
2021-07-12T09:37:47,199     writing top-level names to /tmp/pip-pip-egg-info-2l4ob6bv/centrosome.egg-info/top_level.txt
2021-07-12T09:37:47,201     writing manifest file '/tmp/pip-pip-egg-info-2l4ob6bv/centrosome.egg-info/SOURCES.txt'
2021-07-12T09:37:47,388     reading manifest file '/tmp/pip-pip-egg-info-2l4ob6bv/centrosome.egg-info/SOURCES.txt'
2021-07-12T09:37:47,390     reading manifest template 'MANIFEST.in'
2021-07-12T09:37:47,404     adding license file 'LICENSE'
2021-07-12T09:37:47,408     writing manifest file '/tmp/pip-pip-egg-info-2l4ob6bv/centrosome.egg-info/SOURCES.txt'
2021-07-12T09:37:47,597   Source in /tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8 has version 1.0.8, which satisfies requirement centrosome==1.0.8 from https://files.pythonhosted.org/packages/bf/43/0f7a68d756c9f5667f61d12d0b8a6016f8b0b857204b8ff83ebef973ebc8/centrosome-1.0.8.tar.gz#sha256=47dc3abcb9f4b184ad9f875bf854d3fe221628de3e5999410dba66d3873f11f6
2021-07-12T09:37:47,598   Removed centrosome==1.0.8 from https://files.pythonhosted.org/packages/bf/43/0f7a68d756c9f5667f61d12d0b8a6016f8b0b857204b8ff83ebef973ebc8/centrosome-1.0.8.tar.gz#sha256=47dc3abcb9f4b184ad9f875bf854d3fe221628de3e5999410dba66d3873f11f6 from build tracker '/tmp/pip-req-tracker-kper2bwi'
2021-07-12T09:37:47,602 Created temporary directory: /tmp/pip-unpack-jx_esn7_
2021-07-12T09:37:47,603 Building wheels for collected packages: centrosome
2021-07-12T09:37:47,606   Created temporary directory: /tmp/pip-wheel-sgw1yf37
2021-07-12T09:37:47,607   Building wheel for centrosome (setup.py): started
2021-07-12T09:37:47,608   Destination directory: /tmp/pip-wheel-sgw1yf37
2021-07-12T09:37:47,608   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-hcxah224/centrosome_ebb565fd1d3643bab8123cc45801def8/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-sgw1yf37
2021-07-12T09:37:49,747   running bdist_wheel
2021-07-12T09:37:49,752   running build
2021-07-12T09:37:49,752   running build_py
2021-07-12T09:37:49,894   creating build
2021-07-12T09:37:49,894   creating build/lib.linux-armv7l-3.9
2021-07-12T09:37:49,895   creating build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,896   copying centrosome/watershed.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,898   copying centrosome/radial_power_spectrum.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,900   copying centrosome/smooth.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,902   copying centrosome/bg_compensate.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,904   copying centrosome/index.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,906   copying centrosome/neighmovetrack.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,909   copying centrosome/otsu.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,911   copying centrosome/filter.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,916   copying centrosome/fastemd.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,918   copying centrosome/zernike.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,920   copying centrosome/rankorder.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,923   copying centrosome/cpmorphology.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,930   copying centrosome/princomp.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,932   copying centrosome/threshold.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,936   copying centrosome/kirsch.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,938   copying centrosome/__init__.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,939   copying centrosome/lapjv.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,942   copying centrosome/outline.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,944   copying centrosome/propagate.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,946   copying centrosome/haralick.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,949   copying centrosome/mode.py -> build/lib.linux-armv7l-3.9/centrosome
2021-07-12T09:37:49,953   running build_ext
2021-07-12T09:37:50,242   building '_cpmorphology' extension
2021-07-12T09:37:50,243   creating build/temp.linux-armv7l-3.9
2021-07-12T09:37:50,243   creating build/temp.linux-armv7l-3.9/centrosome
2021-07-12T09:37:50,244   creating build/temp.linux-armv7l-3.9/centrosome/src
2021-07-12T09:37:50,244   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/src/_cpmorphology.c -o build/temp.linux-armv7l-3.9/centrosome/src/_cpmorphology.o
2021-07-12T09:37:50,611   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:37:50,611                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:37:50,611                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:37:50,611                    from centrosome/src/_cpmorphology.c:25:
2021-07-12T09:37:50,611   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:37:50,612      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:37:50,612         |  ^~~~~~~
2021-07-12T09:37:50,647   centrosome/src/_cpmorphology.c: In function ‘cpmaximum’:
2021-07-12T09:37:50,647   centrosome/src/_cpmorphology.c:111:25: warning: implicit declaration of function ‘PyInt_AsLong’; did you mean ‘PyLong_AsLong’? [-Wimplicit-function-declaration]
2021-07-12T09:37:50,647     111 |           *(slots[i]) = PyInt_AsLong(obDim);
2021-07-12T09:37:50,648         |                         ^~~~~~~~~~~~
2021-07-12T09:37:50,648         |                         PyLong_AsLong
2021-07-12T09:37:50,659   centrosome/src/_cpmorphology.c:236:20: warning: implicit declaration of function ‘PyString_FromString’; did you mean ‘PyLong_FromString’? [-Wimplicit-function-declaration]
2021-07-12T09:37:50,660     236 |           output = PyString_FromString(error);
2021-07-12T09:37:50,660         |                    ^~~~~~~~~~~~~~~~~~~
2021-07-12T09:37:50,660         |                    PyLong_FromString
2021-07-12T09:37:50,660   centrosome/src/_cpmorphology.c:236:18: warning: assignment to ‘PyObject *’ {aka ‘struct _object *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
2021-07-12T09:37:50,661     236 |           output = PyString_FromString(error);
2021-07-12T09:37:50,661         |                  ^
2021-07-12T09:37:50,668   centrosome/src/_cpmorphology.c: In function ‘init_cpmorphology’:
2021-07-12T09:37:50,668   centrosome/src/_cpmorphology.c:251:5: warning: implicit declaration of function ‘Py_InitModule’ [-Wimplicit-function-declaration]
2021-07-12T09:37:50,669     251 |     Py_InitModule("_cpmorphology", methods);
2021-07-12T09:37:50,669         |     ^~~~~~~~~~~~~
2021-07-12T09:37:50,672   centrosome/src/_cpmorphology.c:253:1: warning: control reaches end of non-void function [-Wreturn-type]
2021-07-12T09:37:50,672     253 | }
2021-07-12T09:37:50,672         | ^
2021-07-12T09:37:50,675   At top level:
2021-07-12T09:37:50,675   centrosome/src/_cpmorphology.c:27:13: warning: ‘to_stdout’ defined but not used [-Wunused-function]
2021-07-12T09:37:50,676      27 | static void to_stdout(const char *text)
2021-07-12T09:37:50,676         |             ^~~~~~~~~
2021-07-12T09:37:51,042   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/src/_cpmorphology.o -o build/lib.linux-armv7l-3.9/_cpmorphology.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:37:51,154   building '_propagate' extension
2021-07-12T09:37:51,154   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_propagate.c -o build/temp.linux-armv7l-3.9/centrosome/_propagate.o
2021-07-12T09:37:51,552   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:37:51,552                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:37:51,552                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:37:51,552                    from centrosome/_propagate.c:624:
2021-07-12T09:37:51,552   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:37:51,553      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:37:51,553         |  ^~~~~~~
2021-07-12T09:37:51,642   centrosome/_propagate.c: In function ‘__pyx_f_10centrosome_4heap_heap_from_numpy2’:
2021-07-12T09:37:51,644   centrosome/_propagate.c:4798:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-12T09:37:51,645    4798 |   if (((__pyx_t_4 > __pyx_t_3) != 0)) {
2021-07-12T09:37:51,645         |                   ^
2021-07-12T09:37:51,676   centrosome/_propagate.c: In function ‘__pyx_pymod_exec__propagate’:
2021-07-12T09:37:51,679   centrosome/_propagate.c:6302:3: warning: returning ‘void *’ from a function with return type ‘int’ makes integer from pointer without a cast [-Wint-conversion]
2021-07-12T09:37:51,679    6302 |   import_array();
2021-07-12T09:37:51,679         |   ^~~~~~~~~~~~
2021-07-12T09:37:56,331   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_propagate.o -o build/lib.linux-armv7l-3.9/_propagate.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:37:56,460   building 'centrosome._convex_hull' extension
2021-07-12T09:37:56,460   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_convex_hull.cpp -o build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o
2021-07-12T09:37:56,753   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:37:56,753                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:37:56,753                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:37:56,753                    from centrosome/_convex_hull.cpp:640:
2021-07-12T09:37:56,753   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:37:56,754      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:37:56,754         |  ^~~~~~~
2021-07-12T09:38:04,408   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_convex_hull.o -o build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:04,590   building 'centrosome._cpmorphology2' extension
2021-07-12T09:38:04,590   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_cpmorphology2.cpp -o build/temp.linux-armv7l-3.9/centrosome/_cpmorphology2.o
2021-07-12T09:38:04,882   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:38:04,882                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:38:04,882                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:04,882                    from centrosome/_cpmorphology2.cpp:640:
2021-07-12T09:38:04,883   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:38:04,883      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:38:04,883         |  ^~~~~~~
2021-07-12T09:38:06,155   centrosome/_cpmorphology2.cpp: In function ‘PyObject* __pyx_pf_10centrosome_14_cpmorphology2_8index_lookup(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyObject*, PyObject*)’:
2021-07-12T09:38:06,155   centrosome/_cpmorphology2.cpp:6191:29: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_5numpy_uint32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2021-07-12T09:38:06,155    6191 |     __pyx_t_6 = ((__pyx_t_9 == __pyx_v_hit_count) != 0);
2021-07-12T09:38:06,156         |                   ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:06,312   centrosome/_cpmorphology2.cpp: In function ‘int __pyx_pymod_exec__cpmorphology2(PyObject*)’:
2021-07-12T09:38:06,313   centrosome/_cpmorphology2.cpp:10431:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-12T09:38:06,313   10431 |   import_array();
2021-07-12T09:38:06,313         |   ^~~~~~~~~~~~
2021-07-12T09:38:16,213   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_cpmorphology2.o -o build/lib.linux-armv7l-3.9/centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:16,408   building 'centrosome._fastemd' extension
2021-07-12T09:38:16,408   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_fastemd.cpp -o build/temp.linux-armv7l-3.9/centrosome/_fastemd.o
2021-07-12T09:38:16,702   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:38:16,702                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:38:16,703                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:16,703                    from centrosome/_fastemd.cpp:640:
2021-07-12T09:38:16,703   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:38:16,703      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:38:16,703         |  ^~~~~~~
2021-07-12T09:38:18,256   centrosome/_fastemd.cpp: In function ‘PyObject* __pyx_pf_10centrosome_8_fastemd_emd_hat_int32(PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*)’:
2021-07-12T09:38:18,257   centrosome/_fastemd.cpp:2765:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector<std::vector<long int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,257    2765 |   __pyx_t_10 = ((__pyx_v_plen < __pyx_v_vf.size()) != 0);
2021-07-12T09:38:18,257         |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:18,257   centrosome/_fastemd.cpp:2798:31: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,257    2798 |   __pyx_t_10 = ((__pyx_v_qlen < (__pyx_v_vf[0]).size()) != 0);
2021-07-12T09:38:18,257         |                  ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:18,491   In file included from centrosome/include/emd_hat.hpp:59,
2021-07-12T09:38:18,492                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-12T09:38:18,492                    from centrosome/_fastemd.cpp:655:
2021-07-12T09:38:18,492   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’:
2021-07-12T09:38:18,492   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,492   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-12T09:38:18,493   centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,493      41 |     {for (NODE_T i=0; i<P.size(); ++i) {
2021-07-12T09:38:18,493         |                       ~^~~~~~~~~
2021-07-12T09:38:18,494   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’:
2021-07-12T09:38:18,494   centrosome/include/fastemd_hat.hpp:39:65:   required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,494   centrosome/_fastemd.cpp:2597:349:   required from here
2021-07-12T09:38:18,494   centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,496   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’:
2021-07-12T09:38:18,496   centrosome/include/fastemd_hat.hpp:51:63:   required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,496   centrosome/_fastemd.cpp:2649:346:   required from here
2021-07-12T09:38:18,496   centrosome/include/emd_hat_impl.hpp:41:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,535   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘void fillFWithZeros(std::vector<std::vector<NUM_T> >&) [with NUM_T = long int]’:
2021-07-12T09:38:18,535   centrosome/include/emd_hat_impl.hpp:33:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-12T09:38:18,535   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,535   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-12T09:38:18,535   centrosome/include/emd_hat_impl.hpp:17:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::vector<long int> >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,536      17 |     for (NODE_T i= 0; i<F.size(); ++i) {
2021-07-12T09:38:18,536         |                       ~^~~~~~~~~
2021-07-12T09:38:18,536   centrosome/include/emd_hat_impl.hpp:18:28: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,536      18 |         for (NODE_T j= 0; j<F[i].size(); ++j) {
2021-07-12T09:38:18,536         |                           ~^~~~~~~~~~~~
2021-07-12T09:38:18,605   In file included from centrosome/include/emd_hat.hpp:59,
2021-07-12T09:38:18,605                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-12T09:38:18,605                    from centrosome/_fastemd.cpp:655:
2021-07-12T09:38:18,605   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’:
2021-07-12T09:38:18,606   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-12T09:38:18,606   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-12T09:38:18,606   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,606   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-12T09:38:18,606   centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,606     255 |     {for (NODE_T i=0; i<b.size(); ++i) {
2021-07-12T09:38:18,606         |                       ~^~~~~~~~~
2021-07-12T09:38:18,607   centrosome/include/emd_hat_impl.hpp:263:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > >, std::allocator<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,607     263 |     {for (NODE_T i=0; i<c.size(); ++i) {
2021-07-12T09:38:18,607         |                       ~^~~~~~~~~
2021-07-12T09:38:18,642   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’:
2021-07-12T09:38:18,643   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-12T09:38:18,643   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_TRANSHIPMENT_FLOW]’
2021-07-12T09:38:18,643   centrosome/include/fastemd_hat.hpp:39:65:   required from ‘NUM_T emd_hat_gd_metric_without_transshipment_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,643   centrosome/_fastemd.cpp:2597:349:   required from here
2021-07-12T09:38:18,643   centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,643     255 |     {for (NODE_T i=0; i<b.size(); ++i) {
2021-07-12T09:38:18,643         |                       ~^~~~~~~~~
2021-07-12T09:38:18,644   centrosome/include/emd_hat_impl.hpp:263:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > >, std::allocator<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,644     263 |     {for (NODE_T i=0; i<c.size(); ++i) {
2021-07-12T09:38:18,644         |                       ~^~~~~~~~~
2021-07-12T09:38:18,644   centrosome/include/emd_hat_impl.hpp:296:51: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > >, std::allocator<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,645     296 |         for (NODE_T new_name_from=0; new_name_from<flows.size(); ++new_name_from) {
2021-07-12T09:38:18,645         |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~
2021-07-12T09:38:18,653   centrosome/include/emd_hat_impl.hpp: In instantiation of ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’:
2021-07-12T09:38:18,654   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-12T09:38:18,654   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = WITHOUT_EXTRA_MASS_FLOW]’
2021-07-12T09:38:18,654   centrosome/include/fastemd_hat.hpp:51:63:   required from ‘NUM_T emd_hat_gd_metric_without_extra_mass_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,654   centrosome/_fastemd.cpp:2649:346:   required from here
2021-07-12T09:38:18,654   centrosome/include/emd_hat_impl.hpp:255:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,654     255 |     {for (NODE_T i=0; i<b.size(); ++i) {
2021-07-12T09:38:18,655         |                       ~^~~~~~~~~
2021-07-12T09:38:18,655   centrosome/include/emd_hat_impl.hpp:263:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > >, std::allocator<std::__cxx11::list<edge<long int>, std::allocator<edge<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,655     263 |     {for (NODE_T i=0; i<c.size(); ++i) {
2021-07-12T09:38:18,655         |                       ~^~~~~~~~~
2021-07-12T09:38:18,655   centrosome/include/emd_hat_impl.hpp:296:51: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > >, std::allocator<std::__cxx11::list<edge0<long int>, std::allocator<edge0<long int> > > > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,656     296 |         for (NODE_T new_name_from=0; new_name_from<flows.size(); ++new_name_from) {
2021-07-12T09:38:18,656         |                                      ~~~~~~~~~~~~~^~~~~~~~~~~~~
2021-07-12T09:38:18,849   In file included from centrosome/include/emd_hat_impl.hpp:8,
2021-07-12T09:38:18,849                    from centrosome/include/emd_hat.hpp:59,
2021-07-12T09:38:18,849                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-12T09:38:18,849                    from centrosome/_fastemd.cpp:655:
2021-07-12T09:38:18,850   centrosome/include/min_cost_flow.hpp: In instantiation of ‘void min_cost_flow<NUM_T>::compute_shortest_path(std::vector<NUM_T>&, std::vector<int>&, NODE_T, std::vector<std::__cxx11::list<edge1<NUM_T> > >&, std::vector<std::__cxx11::list<edge2<NUM_T> > >&, const std::vector<NUM_T>&, NODE_T&) [with NUM_T = long int; NODE_T = int]’:
2021-07-12T09:38:18,850   centrosome/include/min_cost_flow.hpp:155:17:   required from ‘NUM_T min_cost_flow<NUM_T>::operator()(std::vector<NUM_T>&, const std::vector<std::__cxx11::list<edge<NUM_T> > >&, std::vector<std::__cxx11::list<edge0<NUM_T> > >&) [with NUM_T = long int]’
2021-07-12T09:38:18,850   centrosome/include/emd_hat_impl.hpp:291:24:   required from ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-12T09:38:18,850   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-12T09:38:18,850   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-12T09:38:18,851   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,851   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-12T09:38:18,851   centrosome/include/min_cost_flow.hpp:321:37: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,851     321 |                 if ( (_nodes_to_Q[v]<Q.size()) && (alt<Q[_nodes_to_Q[v]]._dist) ) {
2021-07-12T09:38:18,851         |                      ~~~~~~~~~~~~~~~^~~~~~~~~~
2021-07-12T09:38:18,851   centrosome/include/min_cost_flow.hpp:332:41: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,852     332 |                     if ( (_nodes_to_Q[v]<Q.size()) && (alt<Q[_nodes_to_Q[v]]._dist) )  {
2021-07-12T09:38:18,852         |                          ~~~~~~~~~~~~~~~^~~~~~~~~~
2021-07-12T09:38:18,857   In file included from centrosome/_fastemd.cpp:654:
2021-07-12T09:38:18,857   centrosome/include/flow_utils.hpp: In instantiation of ‘void return_flow_from_to_transhipment_vertex(const std::vector<std::vector<NUM_T> >&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, std::vector<NUM_T>&, std::vector<NUM_T>&) [with NUM_T = long int]’:
2021-07-12T09:38:18,858   centrosome/include/flow_utils.hpp:46:44:   required from ‘void transform_flow_to_regular(std::vector<std::vector<NUM_T> >&, const std::vector<NUM_T>&, const std::vector<NUM_T>&) [with NUM_T = long int]’
2021-07-12T09:38:18,858   centrosome/include/emd_hat_impl.hpp:322:70:   required from ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-12T09:38:18,858   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-12T09:38:18,858   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-12T09:38:18,858   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,858   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-12T09:38:18,859   centrosome/include/flow_utils.hpp:25:24: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,859      25 |     for (NODE_T i= 0; i<P.size(); ++i) {
2021-07-12T09:38:18,859         |                       ~^~~~~~~~~
2021-07-12T09:38:18,859   centrosome/include/flow_utils.hpp:26:28: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<long int>::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,859      26 |         for (NODE_T j= 0; j<P.size(); ++j) {
2021-07-12T09:38:18,859         |                           ~^~~~~~~~~
2021-07-12T09:38:18,976   In file included from centrosome/include/emd_hat_impl.hpp:8,
2021-07-12T09:38:18,977                    from centrosome/include/emd_hat.hpp:59,
2021-07-12T09:38:18,977                    from centrosome/include/fastemd_hat.hpp:18,
2021-07-12T09:38:18,977                    from centrosome/_fastemd.cpp:655:
2021-07-12T09:38:18,977   centrosome/include/min_cost_flow.hpp: In instantiation of ‘void min_cost_flow<NUM_T>::heapify(std::vector<edge3<NUM_T> >&, std::vector<int>&, NODE_T) [with NUM_T = long int; NODE_T = int]’:
2021-07-12T09:38:18,977   centrosome/include/min_cost_flow.hpp:392:9:   required from ‘void min_cost_flow<NUM_T>::heap_remove_first(std::vector<edge3<NUM_T> >&, std::vector<int>&) [with NUM_T = long int]’
2021-07-12T09:38:18,977   centrosome/include/min_cost_flow.hpp:313:13:   required from ‘void min_cost_flow<NUM_T>::compute_shortest_path(std::vector<NUM_T>&, std::vector<int>&, NODE_T, std::vector<std::__cxx11::list<edge1<NUM_T> > >&, std::vector<std::__cxx11::list<edge2<NUM_T> > >&, const std::vector<NUM_T>&, NODE_T&) [with NUM_T = long int; NODE_T = int]’
2021-07-12T09:38:18,978   centrosome/include/min_cost_flow.hpp:155:17:   required from ‘NUM_T min_cost_flow<NUM_T>::operator()(std::vector<NUM_T>&, const std::vector<std::__cxx11::list<edge<NUM_T> > >&, std::vector<std::__cxx11::list<edge0<NUM_T> > >&) [with NUM_T = long int]’
2021-07-12T09:38:18,978   centrosome/include/emd_hat_impl.hpp:291:24:   required from ‘NUM_T emd_hat_impl_integral_types<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-12T09:38:18,978   centrosome/include/emd_hat_impl.hpp:368:62:   required from ‘emd_hat_impl<long int, FLOW_TYPE>::NUM_T emd_hat_impl<long int, FLOW_TYPE>::operator()(const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<long int>&, const std::vector<std::vector<long int> >&, emd_hat_impl<long int, FLOW_TYPE>::NUM_T, std::vector<std::vector<long int> >*) [with FLOW_TYPE_T FLOW_TYPE = NO_FLOW; emd_hat_impl<long int, FLOW_TYPE>::NUM_T = long int]’
2021-07-12T09:38:18,978   centrosome/include/emd_hat_impl.hpp:57:43:   required from ‘NUM_T emd_hat_gd_metric<NUM_T, FLOW_TYPE>::operator()(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int; FLOW_TYPE_T FLOW_TYPE = NO_FLOW]’
2021-07-12T09:38:18,978   centrosome/include/fastemd_hat.hpp:28:38:   required from ‘NUM_T emd_hat_gd_metric_no_flow(const std::vector<NUM_T>&, const std::vector<NUM_T>&, const std::vector<std::vector<NUM_T> >&, NUM_T, std::vector<std::vector<NUM_T> >*) [with NUM_T = long int]’
2021-07-12T09:38:18,978   centrosome/_fastemd.cpp:2489:330:   required from here
2021-07-12T09:38:18,978   centrosome/include/min_cost_flow.hpp:405:20: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,979     405 |             if ( (l<Q.size()) && (Q[l]._dist<Q[i]._dist) ) {
2021-07-12T09:38:18,979         |                  ~~^~~~~~~~~~
2021-07-12T09:38:18,979   centrosome/include/min_cost_flow.hpp:410:20: warning: comparison of integer expressions of different signedness: ‘NODE_T’ {aka ‘int’} and ‘std::vector<edge3<long int>, std::allocator<edge3<long int> > >::size_type’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T09:38:18,979     410 |             if ( (r<Q.size())&& (Q[r]._dist<Q[smallest]._dist) ) {
2021-07-12T09:38:18,979         |                  ~~^~~~~~~~~~
2021-07-12T09:38:29,040   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_fastemd.o -o build/lib.linux-armv7l-3.9/centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:29,383   building 'centrosome._filter' extension
2021-07-12T09:38:29,384   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_filter.cpp -o build/temp.linux-armv7l-3.9/centrosome/_filter.o
2021-07-12T09:38:29,674   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:38:29,674                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:38:29,675                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:29,675                    from centrosome/_filter.cpp:640:
2021-07-12T09:38:29,675   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:38:29,675      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:38:29,675         |  ^~~~~~~
2021-07-12T09:38:30,899   centrosome/_filter.cpp: In function ‘int __pyx_pymod_exec__filter(PyObject*)’:
2021-07-12T09:38:30,899   centrosome/_filter.cpp:8477:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-12T09:38:30,900    8477 |   import_array();
2021-07-12T09:38:30,900         |   ^~~~~~~~~~~~
2021-07-12T09:38:36,892   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_filter.o -o build/lib.linux-armv7l-3.9/centrosome/_filter.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:37,076   building 'centrosome._lapjv' extension
2021-07-12T09:38:37,076   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_lapjv.cpp -o build/temp.linux-armv7l-3.9/centrosome/_lapjv.o
2021-07-12T09:38:37,370   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:38:37,370                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:38:37,370                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:37,370                    from centrosome/_lapjv.cpp:640:
2021-07-12T09:38:37,370   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:38:37,371      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:38:37,371         |  ^~~~~~~
2021-07-12T09:38:38,710   centrosome/_lapjv.cpp: In function ‘int __pyx_pymod_exec__lapjv(PyObject*)’:
2021-07-12T09:38:38,711   centrosome/_lapjv.cpp:7983:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-12T09:38:38,711    7983 |   import_array();
2021-07-12T09:38:38,711         |   ^~~~~~~~~~~~
2021-07-12T09:38:41,702   centrosome/_lapjv.cpp: In function ‘PyObject* __pyx_pf_10centrosome_6_lapjv_2augmenting_row_reduction(PyObject*, int, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*)’:
2021-07-12T09:38:41,703   centrosome/_lapjv.cpp:3484:44: warning: ‘__pyx_v_j2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-12T09:38:41,703    3484 |             __pyx_v_i1 = (__pyx_v_p_y_base[__pyx_v_j1]);
2021-07-12T09:38:41,703         |                                            ^~~~~~~~~~
2021-07-12T09:38:41,703   centrosome/_lapjv.cpp:3427:42: warning: ‘__pyx_v_j1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-12T09:38:41,703    3427 |           __pyx_v_i1 = (__pyx_v_p_y_base[__pyx_v_j1]);
2021-07-12T09:38:41,703         |                                          ^~~~~~~~~~
2021-07-12T09:38:43,247   centrosome/_lapjv.cpp: In function ‘PyObject* __pyx_pf_10centrosome_6_lapjv_4augment(PyObject*, int, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*)’:
2021-07-12T09:38:43,247   centrosome/_lapjv.cpp:5713:24: warning: ‘__pyx_v_umin’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2021-07-12T09:38:43,247    5713 |             __pyx_v_u1 = (((__pyx_v_p_c[__pyx_v_jidx]) - (__pyx_v_p_v_base[__pyx_v_j1])) - __pyx_v_umin);
2021-07-12T09:38:43,247         |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T09:38:46,661   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_lapjv.o -o build/lib.linux-armv7l-3.9/centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:46,847   building 'centrosome._propagate' extension
2021-07-12T09:38:46,847   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -Icentrosome/include -I/usr/include/python3.9 -c centrosome/_propagate.cpp -o build/temp.linux-armv7l-3.9/centrosome/_propagate.o
2021-07-12T09:38:47,135   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T09:38:47,136                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T09:38:47,136                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T09:38:47,136                    from centrosome/_propagate.cpp:638:
2021-07-12T09:38:47,136   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T09:38:47,136      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T09:38:47,136         |  ^~~~~~~
2021-07-12T09:38:48,296   centrosome/_propagate.cpp: In function ‘__pyx_t_10centrosome_4heap_Heap* __pyx_f_10centrosome_4heap_heap_from_numpy2(PyObject*)’:
2021-07-12T09:38:48,296   centrosome/_propagate.cpp:4812:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘unsigned int’ [-Wsign-compare]
2021-07-12T09:38:48,296    4812 |   if (((__pyx_t_4 > __pyx_t_3) != 0)) {
2021-07-12T09:38:48,296         |         ~~~~~~~~~~^~~~~~~~~~~
2021-07-12T09:38:48,331   centrosome/_propagate.cpp: In function ‘int __pyx_pymod_exec__propagate(PyObject*)’:
2021-07-12T09:38:48,331   centrosome/_propagate.cpp:6316:3: warning: converting to non-pointer type ‘int’ from NULL [-Wconversion-null]
2021-07-12T09:38:48,331    6316 |   import_array();
2021-07-12T09:38:48,331         |   ^~~~~~~~~~~~
2021-07-12T09:38:53,160   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/centrosome/_propagate.o -o build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so
2021-07-12T09:38:53,371   installing to build/bdist.linux-armv7l/wheel
2021-07-12T09:38:53,372   running install
2021-07-12T09:38:53,373   running install_lib
2021-07-12T09:38:53,378   creating build/bdist.linux-armv7l
2021-07-12T09:38:53,379   creating build/bdist.linux-armv7l/wheel
2021-07-12T09:38:53,381   copying build/lib.linux-armv7l-3.9/_cpmorphology.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-12T09:38:53,384   copying build/lib.linux-armv7l-3.9/_propagate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel
2021-07-12T09:38:53,395   creating build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,397   copying build/lib.linux-armv7l-3.9/centrosome/watershed.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,399   copying build/lib.linux-armv7l-3.9/centrosome/radial_power_spectrum.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,402   copying build/lib.linux-armv7l-3.9/centrosome/smooth.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,404   copying build/lib.linux-armv7l-3.9/centrosome/bg_compensate.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,408   copying build/lib.linux-armv7l-3.9/centrosome/index.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,411   copying build/lib.linux-armv7l-3.9/centrosome/neighmovetrack.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,414   copying build/lib.linux-armv7l-3.9/centrosome/otsu.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,417   copying build/lib.linux-armv7l-3.9/centrosome/filter.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,422   copying build/lib.linux-armv7l-3.9/centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,453   copying build/lib.linux-armv7l-3.9/centrosome/fastemd.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,455   copying build/lib.linux-armv7l-3.9/centrosome/zernike.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,458   copying build/lib.linux-armv7l-3.9/centrosome/rankorder.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,460   copying build/lib.linux-armv7l-3.9/centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,469   copying build/lib.linux-armv7l-3.9/centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,488   copying build/lib.linux-armv7l-3.9/centrosome/cpmorphology.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,497   copying build/lib.linux-armv7l-3.9/centrosome/princomp.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,500   copying build/lib.linux-armv7l-3.9/centrosome/threshold.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,504   copying build/lib.linux-armv7l-3.9/centrosome/kirsch.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,507   copying build/lib.linux-armv7l-3.9/centrosome/__init__.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,509   copying build/lib.linux-armv7l-3.9/centrosome/lapjv.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,512   copying build/lib.linux-armv7l-3.9/centrosome/outline.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,515   copying build/lib.linux-armv7l-3.9/centrosome/propagate.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,518   copying build/lib.linux-armv7l-3.9/centrosome/haralick.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,522   copying build/lib.linux-armv7l-3.9/centrosome/mode.py -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,526   copying build/lib.linux-armv7l-3.9/centrosome/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,540   copying build/lib.linux-armv7l-3.9/centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,553   copying build/lib.linux-armv7l-3.9/centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/centrosome
2021-07-12T09:38:53,569   running install_egg_info
2021-07-12T09:38:53,594   running egg_info
2021-07-12T09:38:53,595   writing centrosome.egg-info/PKG-INFO
2021-07-12T09:38:53,596   writing dependency_links to centrosome.egg-info/dependency_links.txt
2021-07-12T09:38:53,598   writing requirements to centrosome.egg-info/requires.txt
2021-07-12T09:38:53,599   writing top-level names to centrosome.egg-info/top_level.txt
2021-07-12T09:38:53,642   reading manifest file 'centrosome.egg-info/SOURCES.txt'
2021-07-12T09:38:53,648   reading manifest template 'MANIFEST.in'
2021-07-12T09:38:53,673   adding license file 'LICENSE'
2021-07-12T09:38:53,677   writing manifest file 'centrosome.egg-info/SOURCES.txt'
2021-07-12T09:38:53,679   Copying centrosome.egg-info to build/bdist.linux-armv7l/wheel/centrosome-1.0.8-py3.9.egg-info
2021-07-12T09:38:53,689   running install_scripts
2021-07-12T09:38:53,735   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2021-07-12T09:38:53,739   creating build/bdist.linux-armv7l/wheel/centrosome-1.0.8.dist-info/WHEEL
2021-07-12T09:38:53,742   creating '/tmp/pip-wheel-sgw1yf37/centrosome-1.0.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T09:38:53,749   adding '_cpmorphology.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:53,814   adding '_propagate.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:53,817   adding 'centrosome/__init__.py'
2021-07-12T09:38:53,893   adding 'centrosome/_convex_hull.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:54,020   adding 'centrosome/_cpmorphology2.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:54,229   adding 'centrosome/_fastemd.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:54,324   adding 'centrosome/_filter.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:54,418   adding 'centrosome/_lapjv.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:54,490   adding 'centrosome/_propagate.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T09:38:54,494   adding 'centrosome/bg_compensate.py'
2021-07-12T09:38:54,518   adding 'centrosome/cpmorphology.py'
2021-07-12T09:38:54,520   adding 'centrosome/fastemd.py'
2021-07-12T09:38:54,530   adding 'centrosome/filter.py'
2021-07-12T09:38:54,532   adding 'centrosome/haralick.py'
2021-07-12T09:38:54,534   adding 'centrosome/index.py'
2021-07-12T09:38:54,535   adding 'centrosome/kirsch.py'
2021-07-12T09:38:54,537   adding 'centrosome/lapjv.py'
2021-07-12T09:38:54,538   adding 'centrosome/mode.py'
2021-07-12T09:38:54,540   adding 'centrosome/neighmovetrack.py'
2021-07-12T09:38:54,542   adding 'centrosome/otsu.py'
2021-07-12T09:38:54,543   adding 'centrosome/outline.py'
2021-07-12T09:38:54,544   adding 'centrosome/princomp.py'
2021-07-12T09:38:54,545   adding 'centrosome/propagate.py'
2021-07-12T09:38:54,546   adding 'centrosome/radial_power_spectrum.py'
2021-07-12T09:38:54,548   adding 'centrosome/rankorder.py'
2021-07-12T09:38:54,549   adding 'centrosome/smooth.py'
2021-07-12T09:38:54,554   adding 'centrosome/threshold.py'
2021-07-12T09:38:54,555   adding 'centrosome/watershed.py'
2021-07-12T09:38:54,557   adding 'centrosome/zernike.py'
2021-07-12T09:38:54,559   adding 'centrosome-1.0.8.dist-info/LICENSE'
2021-07-12T09:38:54,560   adding 'centrosome-1.0.8.dist-info/METADATA'
2021-07-12T09:38:54,561   adding 'centrosome-1.0.8.dist-info/WHEEL'
2021-07-12T09:38:54,562   adding 'centrosome-1.0.8.dist-info/top_level.txt'
2021-07-12T09:38:54,563   adding 'centrosome-1.0.8.dist-info/RECORD'
2021-07-12T09:38:54,598   removing build/bdist.linux-armv7l/wheel
2021-07-12T09:38:54,768   Building wheel for centrosome (setup.py): finished with status 'done'
2021-07-12T09:38:54,791   Created wheel for centrosome: filename=centrosome-1.0.8-cp39-cp39-linux_armv7l.whl size=1459770 sha256=911e35efab632ba8a6c6d37582c27c0c6531d3d25e96140c00a7346118d9cab4
2021-07-12T09:38:54,792   Stored in directory: /tmp/pip-ephem-wheel-cache-rsfmezje/wheels/c1/12/f7/74d902fe29c1ed1fe2ac16df5ef68ef12f96a01f62850adee5
2021-07-12T09:38:54,802 Successfully built centrosome
2021-07-12T09:38:54,853 Removed build tracker: '/tmp/pip-req-tracker-kper2bwi'