2021-07-12T12:27:15,320 Created temporary directory: /tmp/pip-ephem-wheel-cache-bh9y2pqu 2021-07-12T12:27:15,323 Created temporary directory: /tmp/pip-req-tracker-_z68ffuu 2021-07-12T12:27:15,324 Initialized build tracking at /tmp/pip-req-tracker-_z68ffuu 2021-07-12T12:27:15,324 Created build tracker: /tmp/pip-req-tracker-_z68ffuu 2021-07-12T12:27:15,324 Entered build tracker: /tmp/pip-req-tracker-_z68ffuu 2021-07-12T12:27:15,325 Created temporary directory: /tmp/pip-wheel-nbdbhkly 2021-07-12T12:27:15,355 1 location(s) to search for versions of sshmm: 2021-07-12T12:27:15,355 * https://pypi.org/simple/sshmm/ 2021-07-12T12:27:15,355 Fetching project page and analyzing links: https://pypi.org/simple/sshmm/ 2021-07-12T12:27:15,356 Getting page https://pypi.org/simple/sshmm/ 2021-07-12T12:27:15,357 Found index url https://pypi.org/simple 2021-07-12T12:27:15,467 Skipping link: none of the wheel's tags (cp27-cp27m-macosx_10_9_x86_64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/36/4d/4e5c9ec7dbdb161e2596052e03f9e28b749a3ea81e27334ed1097c0b7f52/sshmm-1.0.0b1-cp27-cp27m-macosx_10_9_x86_64.whl#sha256=cf4f7255b766849c8521510dd9a1c87009630202593d7e2eae5e2dea95625b88 (from https://pypi.org/simple/sshmm/) 2021-07-12T12:27:15,467 Found link https://files.pythonhosted.org/packages/97/44/e32793922d5d9efc9872b2140c1db1b6c0b30c2e64c3ae79c3a1d32504a4/sshmm-1.0.0b1.tar.gz#sha256=5aaa64fa266510404958809475ece07b132891e60784a0ab6ff29462b02b828b (from https://pypi.org/simple/sshmm/), version: 1.0.0b1 2021-07-12T12:27:15,468 Found link https://files.pythonhosted.org/packages/fe/03/bccd0cc022e09c4e7606d8e377b42ebaeb2433231aca8c54d3dc5168cc8d/sshmm-1.0.0b2.tar.gz#sha256=edc1a5ffa9c1a5b6fb073152fa830ec4abae180e61e3d83dff5e412ff1cc4f63 (from https://pypi.org/simple/sshmm/), version: 1.0.0b2 2021-07-12T12:27:15,468 Found link https://files.pythonhosted.org/packages/22/24/736193beb8c98f3d0d2d65163ea1cb195ef0ef8748b31939c64722ecdf53/sshmm-1.0.0b3.tar.gz#sha256=dde85e5c49a4e447b2fe2cb0a3b4c95f2e1c50fbc8e9306f0855522deefe6db6 (from https://pypi.org/simple/sshmm/), version: 1.0.0b3 2021-07-12T12:27:15,469 Found link https://files.pythonhosted.org/packages/62/1c/4048f09b600fac644c306343115544cdb2b81dd0c559245d2c3b530a045a/sshmm-1.0.0b4.tar.gz#sha256=5e1f78c5fe1e37a7ae83b9bb419298129fa4cb4deb7185fc25b90ab40e51d8c0 (from https://pypi.org/simple/sshmm/), version: 1.0.0b4 2021-07-12T12:27:15,469 Found link https://files.pythonhosted.org/packages/e2/72/ce482d27cd639d9a0ec3b68ea03a3944b82cbccaf1cc1100c910fe83cf9a/sshmm-1.0.0.tar.gz#sha256=dd45c82082c1598305f9f10974338eb654189736288301384c7fe4332db9de55 (from https://pypi.org/simple/sshmm/), version: 1.0.0 2021-07-12T12:27:15,469 Found link https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa (from https://pypi.org/simple/sshmm/), version: 1.0.1 2021-07-12T12:27:15,469 Found link https://files.pythonhosted.org/packages/a0/74/f289f8598a645cfc2db58a5b591750f6cdc8b080423e57b4263557f4cdab/sshmm-1.0.2.tar.gz#sha256=95b299baaf2a20b3a214026ddb5be7f827b7754d5760807a2f81e7262011e7f5 (from https://pypi.org/simple/sshmm/), version: 1.0.2 2021-07-12T12:27:15,470 Found link https://files.pythonhosted.org/packages/10/67/9dc00dbe13df08d1cb5a805fbfc80527aa6b29db11bf6661704116cb59bd/sshmm-1.0.4.tar.gz#sha256=871c43b30cea3e2ee3fcc61caa1c2c2ba0e6e16e5ee9c79b484517bb5238e03f (from https://pypi.org/simple/sshmm/), version: 1.0.4 2021-07-12T12:27:15,470 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/6d/93/d1879de96986253da47c110755bcc15eda8acfe94c3f5e7185dc6a642c0c/sshmm-1.0.5-py2.7-linux-x86_64.egg#sha256=86d70f06238168852b0342ea733f6893e8baa49be151aab77d6f49cbab6ff227 (from https://pypi.org/simple/sshmm/) 2021-07-12T12:27:15,470 Found link https://files.pythonhosted.org/packages/e1/1c/d8d53d575807110582f43da63707146463dd1ba6402f93004d6750f17223/sshmm-1.0.5.tar.gz#sha256=37192b827f23fa07812a70eb5cba98beaa908e6ac91182a7a37fc782f9a76d4b (from https://pypi.org/simple/sshmm/), version: 1.0.5 2021-07-12T12:27:15,470 Found link https://files.pythonhosted.org/packages/e8/2e/eac438a8f8be5db789942a9dc748f9b26e40ec603d9cf5176d52f31a8f98/sshmm-1.0.6.tar.gz#sha256=b4a815dd05c569abb39d9e84b69579616ea4393fe7240ec17e3836a50eb344c8 (from https://pypi.org/simple/sshmm/), version: 1.0.6 2021-07-12T12:27:15,471 Found link https://files.pythonhosted.org/packages/12/72/6ee09510afa0842f6e131ed3845253d9a3c3fad5a360fa3f92e31ef58b42/sshmm-1.0.7.tar.gz#sha256=6e40f1afcc83b4886cbb0149ce06b20213251864881b2e91852355c6f9c22fd9 (from https://pypi.org/simple/sshmm/), version: 1.0.7 2021-07-12T12:27:15,471 Skipping link: not a file: https://pypi.org/simple/sshmm/ 2021-07-12T12:27:15,473 Given no hashes to check 1 links for project 'sshmm': discarding no candidates 2021-07-12T12:27:15,492 Collecting sshmm==1.0.1 2021-07-12T12:27:15,494 Created temporary directory: /tmp/pip-unpack-_8lk8jit 2021-07-12T12:27:15,679 Downloading sshmm-1.0.1.tar.gz (102 kB) 2021-07-12T12:27:15,789 Added sshmm==1.0.1 from https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa to build tracker '/tmp/pip-req-tracker-_z68ffuu' 2021-07-12T12:27:15,790 Running setup.py (path:/tmp/pip-wheel-nbdbhkly/sshmm_6d7b7582105e4000a72bd471dc688a70/setup.py) egg_info for package sshmm 2021-07-12T12:27:15,791 Created temporary directory: /tmp/pip-pip-egg-info-4myn9dhh 2021-07-12T12:27:15,791 Running command python setup.py egg_info 2021-07-12T12:27:16,812 running egg_info 2021-07-12T12:27:16,814 creating /tmp/pip-pip-egg-info-4myn9dhh/sshmm.egg-info 2021-07-12T12:27:16,816 writing /tmp/pip-pip-egg-info-4myn9dhh/sshmm.egg-info/PKG-INFO 2021-07-12T12:27:16,818 writing dependency_links to /tmp/pip-pip-egg-info-4myn9dhh/sshmm.egg-info/dependency_links.txt 2021-07-12T12:27:16,820 writing requirements to /tmp/pip-pip-egg-info-4myn9dhh/sshmm.egg-info/requires.txt 2021-07-12T12:27:16,821 writing top-level names to /tmp/pip-pip-egg-info-4myn9dhh/sshmm.egg-info/top_level.txt 2021-07-12T12:27:16,823 writing manifest file '/tmp/pip-pip-egg-info-4myn9dhh/sshmm.egg-info/SOURCES.txt' 2021-07-12T12:27:17,158 reading manifest file '/tmp/pip-pip-egg-info-4myn9dhh/sshmm.egg-info/SOURCES.txt' 2021-07-12T12:27:17,162 writing manifest file '/tmp/pip-pip-egg-info-4myn9dhh/sshmm.egg-info/SOURCES.txt' 2021-07-12T12:27:17,235 Source in /tmp/pip-wheel-nbdbhkly/sshmm_6d7b7582105e4000a72bd471dc688a70 has version 1.0.1, which satisfies requirement sshmm==1.0.1 from https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa 2021-07-12T12:27:17,236 Removed sshmm==1.0.1 from https://files.pythonhosted.org/packages/74/c7/1ec8e51e65a7ac776dfbd71604de94b906c89eea4a03c447c3982be50abb/sshmm-1.0.1.tar.gz#sha256=995f6e05bdda86a9129098507348e6717419c25ccd4dec79bbf8d27ad7afa7fa from build tracker '/tmp/pip-req-tracker-_z68ffuu' 2021-07-12T12:27:17,241 Created temporary directory: /tmp/pip-unpack-_t4dakbs 2021-07-12T12:27:17,241 Building wheels for collected packages: sshmm 2021-07-12T12:27:17,246 Created temporary directory: /tmp/pip-wheel-3_p04ifn 2021-07-12T12:27:17,246 Building wheel for sshmm (setup.py): started 2021-07-12T12:27:17,246 Destination directory: /tmp/pip-wheel-3_p04ifn 2021-07-12T12:27:17,246 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-nbdbhkly/sshmm_6d7b7582105e4000a72bd471dc688a70/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-nbdbhkly/sshmm_6d7b7582105e4000a72bd471dc688a70/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-3_p04ifn 2021-07-12T12:27:18,299 running bdist_wheel 2021-07-12T12:27:18,456 running build 2021-07-12T12:27:18,457 running build_py 2021-07-12T12:27:18,599 creating build 2021-07-12T12:27:18,599 creating build/lib.linux-armv7l-3.9 2021-07-12T12:27:18,600 creating build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,601 copying sshmm/MyHMM.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,604 copying sshmm/seqstructhmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,606 copying sshmm/pwm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,608 copying sshmm/structure_prediction.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,611 copying sshmm/__init__.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,612 copying sshmm/sequence_container.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,615 copying sshmm/log.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,616 copying sshmm/setup.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,618 copying sshmm/seq_hmm.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,621 copying sshmm/SimpleQueue.py -> build/lib.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,624 creating build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T12:27:18,625 copying sshmm/img/T.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T12:27:18,628 copying sshmm/img/A.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T12:27:18,635 copying sshmm/img/U.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T12:27:18,639 copying sshmm/img/C.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T12:27:18,643 copying sshmm/img/G.png -> build/lib.linux-armv7l-3.9/sshmm/img 2021-07-12T12:27:18,648 running build_ext 2021-07-12T12:27:18,655 building 'cEstimate' extension 2021-07-12T12:27:18,655 creating build/temp.linux-armv7l-3.9 2021-07-12T12:27:18,656 creating build/temp.linux-armv7l-3.9/sshmm 2021-07-12T12:27:18,657 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c sshmm/cEstimate.c -o build/temp.linux-armv7l-3.9/sshmm/cEstimate.o 2021-07-12T12:27:19,068 sshmm/cEstimate.c: In function ‘__pyx_pf_12seqstructhmm_9cEstimate_cEstimate’: 2021-07-12T12:27:19,069 sshmm/cEstimate.c:926:17: warning: implicit declaration of function ‘PyString_AsString’ [-Wimplicit-function-declaration] 2021-07-12T12:27:19,069 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-12T12:27:19,069 | ^~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,070 sshmm/cEstimate.c:926:15: warning: assignment to ‘char *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2021-07-12T12:27:19,070 926 | __pyx_t_8 = PyString_AsString(__pyx_t_4); if (unlikely(__pyx_t_8 == NULL)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 23; __pyx_clineno = __LINE__; goto __pyx_L1_error;} 2021-07-12T12:27:19,070 | ^ 2021-07-12T12:27:19,086 sshmm/cEstimate.c: In function ‘__Pyx_ParseOptionalKeywords’: 2021-07-12T12:27:19,087 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,087 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,087 | ^ 2021-07-12T12:27:19,089 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,089 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,089 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,089 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T12:27:19,089 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T12:27:19,089 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,091 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,091 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,091 | ^ 2021-07-12T12:27:19,091 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,091 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,092 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,092 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T12:27:19,092 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T12:27:19,092 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,093 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,093 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,093 | ^ 2021-07-12T12:27:19,094 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,094 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,094 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,094 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T12:27:19,094 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T12:27:19,094 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,096 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,096 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,096 | ^ 2021-07-12T12:27:19,096 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,096 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,096 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,096 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T12:27:19,097 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T12:27:19,097 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,098 sshmm/cEstimate.c:2245:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,098 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,098 | ^ 2021-07-12T12:27:19,099 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,099 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,099 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,099 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T12:27:19,099 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T12:27:19,099 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,100 sshmm/cEstimate.c:2245:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,101 2245 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,101 | ^ 2021-07-12T12:27:19,101 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,101 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,101 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,101 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T12:27:19,101 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T12:27:19,101 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,103 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,104 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,104 | ^ 2021-07-12T12:27:19,104 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,104 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,104 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,104 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T12:27:19,104 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T12:27:19,105 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,106 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,106 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,106 | ^ 2021-07-12T12:27:19,106 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,107 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,107 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,107 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T12:27:19,107 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T12:27:19,107 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,108 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,109 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,109 | ^ 2021-07-12T12:27:19,109 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,109 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,109 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,109 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T12:27:19,109 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T12:27:19,109 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,111 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,111 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,111 | ^ 2021-07-12T12:27:19,111 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,111 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,112 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,112 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T12:27:19,112 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T12:27:19,112 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,113 sshmm/cEstimate.c:2261:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,113 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,113 | ^ 2021-07-12T12:27:19,114 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,114 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,114 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,114 /usr/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here 2021-07-12T12:27:19,114 580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode( 2021-07-12T12:27:19,114 | ^~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:19,116 sshmm/cEstimate.c:2261:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations] 2021-07-12T12:27:19,116 2261 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 : 2021-07-12T12:27:19,116 | ^ 2021-07-12T12:27:19,116 In file included from /usr/include/python3.9/unicodeobject.h:1026, 2021-07-12T12:27:19,116 from /usr/include/python3.9/Python.h:97, 2021-07-12T12:27:19,116 from sshmm/cEstimate.c:24: 2021-07-12T12:27:19,116 /usr/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here 2021-07-12T12:27:19,116 446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) { 2021-07-12T12:27:19,117 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:27:20,263 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/sshmm/cEstimate.o -o build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:27:20,386 running build_scripts 2021-07-12T12:27:20,386 creating build/scripts-3.9 2021-07-12T12:27:20,387 copying and adjusting bin/preprocess_dataset -> build/scripts-3.9 2021-07-12T12:27:20,390 copying and adjusting bin/train_seqstructhmm -> build/scripts-3.9 2021-07-12T12:27:20,392 copying and adjusting bin/batch_seqstructhmm -> build/scripts-3.9 2021-07-12T12:27:20,394 changing mode of build/scripts-3.9/preprocess_dataset from 644 to 755 2021-07-12T12:27:20,394 changing mode of build/scripts-3.9/train_seqstructhmm from 644 to 755 2021-07-12T12:27:20,394 changing mode of build/scripts-3.9/batch_seqstructhmm from 644 to 755 2021-07-12T12:27:20,403 installing to build/bdist.linux-armv7l/wheel 2021-07-12T12:27:20,403 running install 2021-07-12T12:27:20,405 running install_lib 2021-07-12T12:27:20,409 creating build/bdist.linux-armv7l 2021-07-12T12:27:20,409 creating build/bdist.linux-armv7l/wheel 2021-07-12T12:27:20,410 copying build/lib.linux-armv7l-3.9/cEstimate.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel 2021-07-12T12:27:20,416 creating build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,416 copying build/lib.linux-armv7l-3.9/sshmm/MyHMM.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,419 copying build/lib.linux-armv7l-3.9/sshmm/seqstructhmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,422 copying build/lib.linux-armv7l-3.9/sshmm/pwm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,424 copying build/lib.linux-armv7l-3.9/sshmm/structure_prediction.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,426 copying build/lib.linux-armv7l-3.9/sshmm/__init__.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,428 copying build/lib.linux-armv7l-3.9/sshmm/sequence_container.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,430 copying build/lib.linux-armv7l-3.9/sshmm/log.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,432 creating build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T12:27:20,433 copying build/lib.linux-armv7l-3.9/sshmm/img/T.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T12:27:20,435 copying build/lib.linux-armv7l-3.9/sshmm/img/A.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T12:27:20,438 copying build/lib.linux-armv7l-3.9/sshmm/img/U.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T12:27:20,441 copying build/lib.linux-armv7l-3.9/sshmm/img/C.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T12:27:20,445 copying build/lib.linux-armv7l-3.9/sshmm/img/G.png -> build/bdist.linux-armv7l/wheel/sshmm/img 2021-07-12T12:27:20,447 copying build/lib.linux-armv7l-3.9/sshmm/setup.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,449 copying build/lib.linux-armv7l-3.9/sshmm/seq_hmm.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,452 copying build/lib.linux-armv7l-3.9/sshmm/SimpleQueue.py -> build/bdist.linux-armv7l/wheel/sshmm 2021-07-12T12:27:20,453 running install_egg_info 2021-07-12T12:27:20,480 running egg_info 2021-07-12T12:27:20,481 writing sshmm.egg-info/PKG-INFO 2021-07-12T12:27:20,483 writing dependency_links to sshmm.egg-info/dependency_links.txt 2021-07-12T12:27:20,485 writing requirements to sshmm.egg-info/requires.txt 2021-07-12T12:27:20,486 writing top-level names to sshmm.egg-info/top_level.txt 2021-07-12T12:27:20,491 reading manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-12T12:27:20,496 writing manifest file 'sshmm.egg-info/SOURCES.txt' 2021-07-12T12:27:20,497 Copying sshmm.egg-info to build/bdist.linux-armv7l/wheel/sshmm-1.0.1-py3.9.egg-info 2021-07-12T12:27:20,513 running install_scripts 2021-07-12T12:27:20,574 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.1.data 2021-07-12T12:27:20,575 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.1.data/scripts 2021-07-12T12:27:20,576 copying build/scripts-3.9/batch_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.1.data/scripts 2021-07-12T12:27:20,578 copying build/scripts-3.9/preprocess_dataset -> build/bdist.linux-armv7l/wheel/sshmm-1.0.1.data/scripts 2021-07-12T12:27:20,581 copying build/scripts-3.9/train_seqstructhmm -> build/bdist.linux-armv7l/wheel/sshmm-1.0.1.data/scripts 2021-07-12T12:27:20,583 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.1.data/scripts/batch_seqstructhmm to 755 2021-07-12T12:27:20,583 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.1.data/scripts/preprocess_dataset to 755 2021-07-12T12:27:20,583 changing mode of build/bdist.linux-armv7l/wheel/sshmm-1.0.1.data/scripts/train_seqstructhmm to 755 2021-07-12T12:27:20,605 creating build/bdist.linux-armv7l/wheel/sshmm-1.0.1.dist-info/WHEEL 2021-07-12T12:27:20,607 creating '/tmp/pip-wheel-3_p04ifn/sshmm-1.0.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T12:27:20,626 adding 'cEstimate.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:27:20,631 adding 'sshmm/MyHMM.py' 2021-07-12T12:27:20,633 adding 'sshmm/SimpleQueue.py' 2021-07-12T12:27:20,634 adding 'sshmm/__init__.py' 2021-07-12T12:27:20,635 adding 'sshmm/log.py' 2021-07-12T12:27:20,637 adding 'sshmm/pwm.py' 2021-07-12T12:27:20,638 adding 'sshmm/seq_hmm.py' 2021-07-12T12:27:20,641 adding 'sshmm/seqstructhmm.py' 2021-07-12T12:27:20,643 adding 'sshmm/sequence_container.py' 2021-07-12T12:27:20,644 adding 'sshmm/setup.py' 2021-07-12T12:27:20,646 adding 'sshmm/structure_prediction.py' 2021-07-12T12:27:20,649 adding 'sshmm/img/A.png' 2021-07-12T12:27:20,651 adding 'sshmm/img/C.png' 2021-07-12T12:27:20,653 adding 'sshmm/img/G.png' 2021-07-12T12:27:20,655 adding 'sshmm/img/T.png' 2021-07-12T12:27:20,657 adding 'sshmm/img/U.png' 2021-07-12T12:27:20,659 adding 'sshmm-1.0.1.data/scripts/batch_seqstructhmm' 2021-07-12T12:27:20,662 adding 'sshmm-1.0.1.data/scripts/preprocess_dataset' 2021-07-12T12:27:20,664 adding 'sshmm-1.0.1.data/scripts/train_seqstructhmm' 2021-07-12T12:27:20,666 adding 'sshmm-1.0.1.dist-info/METADATA' 2021-07-12T12:27:20,667 adding 'sshmm-1.0.1.dist-info/WHEEL' 2021-07-12T12:27:20,667 adding 'sshmm-1.0.1.dist-info/top_level.txt' 2021-07-12T12:27:20,668 adding 'sshmm-1.0.1.dist-info/RECORD' 2021-07-12T12:27:20,672 removing build/bdist.linux-armv7l/wheel 2021-07-12T12:27:20,766 Building wheel for sshmm (setup.py): finished with status 'done' 2021-07-12T12:27:20,770 Created wheel for sshmm: filename=sshmm-1.0.1-cp39-cp39-linux_armv7l.whl size=128104 sha256=6d8b1b121747da35186f3f7313908eb79fa8abe9b3d66787eb90770fb3c7bfab 2021-07-12T12:27:20,770 Stored in directory: /tmp/pip-ephem-wheel-cache-bh9y2pqu/wheels/1c/27/8d/c252a369d223e118fe9779545144150c79360611f8dca145b0 2021-07-12T12:27:20,779 Successfully built sshmm 2021-07-12T12:27:20,786 Removed build tracker: '/tmp/pip-req-tracker-_z68ffuu'