2021-07-12T12:37:14,706 Created temporary directory: /tmp/pip-ephem-wheel-cache-usw5_ajo
2021-07-12T12:37:14,710 Created temporary directory: /tmp/pip-req-tracker-wn5sjxha
2021-07-12T12:37:14,710 Initialized build tracking at /tmp/pip-req-tracker-wn5sjxha
2021-07-12T12:37:14,710 Created build tracker: /tmp/pip-req-tracker-wn5sjxha
2021-07-12T12:37:14,710 Entered build tracker: /tmp/pip-req-tracker-wn5sjxha
2021-07-12T12:37:14,711 Created temporary directory: /tmp/pip-wheel-gblodk6y
2021-07-12T12:37:14,741 1 location(s) to search for versions of molmod:
2021-07-12T12:37:14,741 * https://pypi.org/simple/molmod/
2021-07-12T12:37:14,741 Fetching project page and analyzing links: https://pypi.org/simple/molmod/
2021-07-12T12:37:14,742 Getting page https://pypi.org/simple/molmod/
2021-07-12T12:37:14,743 Found index url https://pypi.org/simple
2021-07-12T12:37:14,839   Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1
2021-07-12T12:37:14,840   Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0
2021-07-12T12:37:14,840   Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1
2021-07-12T12:37:14,840   Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2
2021-07-12T12:37:14,840   Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3
2021-07-12T12:37:14,841   Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4
2021-07-12T12:37:14,841   Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5
2021-07-12T12:37:14,841   Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0
2021-07-12T12:37:14,842   Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1
2021-07-12T12:37:14,842   Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2
2021-07-12T12:37:14,842   Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3
2021-07-12T12:37:14,843   Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4
2021-07-12T12:37:14,843   Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5
2021-07-12T12:37:14,843   Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6
2021-07-12T12:37:14,843   Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7
2021-07-12T12:37:14,844   Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8
2021-07-12T12:37:14,844 Skipping link: not a file: https://pypi.org/simple/molmod/
2021-07-12T12:37:14,865 Given no hashes to check 1 links for project 'molmod': discarding no candidates
2021-07-12T12:37:14,889 Collecting molmod==1.2.1
2021-07-12T12:37:14,891   Created temporary directory: /tmp/pip-unpack-tkma8cnb
2021-07-12T12:37:15,735   Downloading molmod-1.2.1.tar.gz (1.7 MB)
2021-07-12T12:37:16,654   Added molmod==1.2.1 from https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 to build tracker '/tmp/pip-req-tracker-wn5sjxha'
2021-07-12T12:37:16,655     Running setup.py (path:/tmp/pip-wheel-gblodk6y/molmod_88034a3c66704141b44dd741ea15519e/setup.py) egg_info for package molmod
2021-07-12T12:37:16,656     Created temporary directory: /tmp/pip-pip-egg-info-27j5uvmt
2021-07-12T12:37:16,656     Running command python setup.py egg_info
2021-07-12T12:37:17,998     fatal: not a git repository (or any of the parent directories): .git
2021-07-12T12:37:18,161     running egg_info
2021-07-12T12:37:18,163     creating /tmp/pip-pip-egg-info-27j5uvmt/molmod.egg-info
2021-07-12T12:37:18,164     writing /tmp/pip-pip-egg-info-27j5uvmt/molmod.egg-info/PKG-INFO
2021-07-12T12:37:18,166     writing dependency_links to /tmp/pip-pip-egg-info-27j5uvmt/molmod.egg-info/dependency_links.txt
2021-07-12T12:37:18,168     writing requirements to /tmp/pip-pip-egg-info-27j5uvmt/molmod.egg-info/requires.txt
2021-07-12T12:37:18,169     writing top-level names to /tmp/pip-pip-egg-info-27j5uvmt/molmod.egg-info/top_level.txt
2021-07-12T12:37:18,171     writing manifest file '/tmp/pip-pip-egg-info-27j5uvmt/molmod.egg-info/SOURCES.txt'
2021-07-12T12:37:18,326     reading manifest file '/tmp/pip-pip-egg-info-27j5uvmt/molmod.egg-info/SOURCES.txt'
2021-07-12T12:37:18,328     reading manifest template 'MANIFEST.in'
2021-07-12T12:37:18,688     warning: no previously-included files matching 'ext.c' found under directory 'molmod'
2021-07-12T12:37:18,750     adding license file 'LICENSE.txt'
2021-07-12T12:37:18,761     writing manifest file '/tmp/pip-pip-egg-info-27j5uvmt/molmod.egg-info/SOURCES.txt'
2021-07-12T12:37:18,879   Source in /tmp/pip-wheel-gblodk6y/molmod_88034a3c66704141b44dd741ea15519e has version 1.2.1, which satisfies requirement molmod==1.2.1 from https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843
2021-07-12T12:37:18,880   Removed molmod==1.2.1 from https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 from build tracker '/tmp/pip-req-tracker-wn5sjxha'
2021-07-12T12:37:18,884 Created temporary directory: /tmp/pip-unpack-xq1irdit
2021-07-12T12:37:18,884 Building wheels for collected packages: molmod
2021-07-12T12:37:18,888   Created temporary directory: /tmp/pip-wheel-vm0iwwai
2021-07-12T12:37:18,888   Building wheel for molmod (setup.py): started
2021-07-12T12:37:18,889   Destination directory: /tmp/pip-wheel-vm0iwwai
2021-07-12T12:37:18,889   Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-gblodk6y/molmod_88034a3c66704141b44dd741ea15519e/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-gblodk6y/molmod_88034a3c66704141b44dd741ea15519e/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-vm0iwwai
2021-07-12T12:37:20,202   fatal: not a git repository (or any of the parent directories): .git
2021-07-12T12:37:20,381   running bdist_wheel
2021-07-12T12:37:20,386   running build
2021-07-12T12:37:20,386   running build_py
2021-07-12T12:37:20,520   creating build
2021-07-12T12:37:20,521   creating build/lib.linux-armv7l-3.9
2021-07-12T12:37:20,521   creating build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,522   copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,525   copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,527   copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,529   copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,531   copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,533   copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,536   copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,538   copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,539   copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,542   copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,544   copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,547   copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,550   copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,553   copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,556   copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,558   copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,561   copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,564   copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,566   copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,568   copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,572   copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,574   copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,577   copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,580   copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,582   copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,586   copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:20,590   creating build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,591   copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,594   copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,597   copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,599   copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,601   copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,604   copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,606   copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,608   copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,610   copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,612   copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,614   copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,616   copying molmod/test/test_meta.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,618   copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,620   copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,622   copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,624   copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,627   copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,630   copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,633   copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,634   copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,636   copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,638   copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,640   copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,642   copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test
2021-07-12T12:37:20,645   creating build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,646   copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,649   copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,651   copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,654   copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,657   copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,659   copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,662   copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,664   copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,667   copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,669   copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,672   copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,674   copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,676   copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,679   copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,681   copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,684   copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,687   copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,689   copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,691   copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io
2021-07-12T12:37:20,694   creating build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,695   copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,697   copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,700   copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,702   copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,704   copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,706   copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,708   copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,710   copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,713   copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,715   copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,717   copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,719   copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,720   copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,722   copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,724   copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,726   copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,728   copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test
2021-07-12T12:37:20,730   running egg_info
2021-07-12T12:37:20,745   writing molmod.egg-info/PKG-INFO
2021-07-12T12:37:20,747   writing dependency_links to molmod.egg-info/dependency_links.txt
2021-07-12T12:37:20,749   writing requirements to molmod.egg-info/requires.txt
2021-07-12T12:37:20,750   writing top-level names to molmod.egg-info/top_level.txt
2021-07-12T12:37:20,763   reading manifest file 'molmod.egg-info/SOURCES.txt'
2021-07-12T12:37:20,770   reading manifest template 'MANIFEST.in'
2021-07-12T12:37:21,105   warning: no previously-included files matching 'ext.c' found under directory 'molmod'
2021-07-12T12:37:21,158   adding license file 'LICENSE.txt'
2021-07-12T12:37:21,173   writing manifest file 'molmod.egg-info/SOURCES.txt'
2021-07-12T12:37:21,188   copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,191   copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,193   copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,195   copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,198   copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,200   copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,202   copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,204   copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,206   copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,209   copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,211   copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,213   copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,215   copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,217   copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,219   copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,222   copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,224   copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,226   copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod
2021-07-12T12:37:21,229   creating build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:37:21,229   copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:37:21,232   copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:37:21,235   copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:37:21,246   copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:37:21,261   copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:37:21,264   copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:37:21,267   copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data
2021-07-12T12:37:21,270   creating build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,271   copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,275   copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,289   copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,291   copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,293   copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,295   copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,318   copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,321   copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,323   copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,325   copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,328   copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,330   copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,332   copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,335   copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,337   copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,339   copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,341   copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,343   copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,346   copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,349   copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,360   copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,362   copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,364   copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,367   copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,380   copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,383   copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,385   copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,387   copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,389   copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,393   copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,395   copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,397   copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,399   copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,401   copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,403   copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,405   copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,408   copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,410   copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,419   copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,423   copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,425   copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,428   copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,430   copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,432   copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,434   copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,436   copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,438   copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,440   copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,443   copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,446   copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,448   copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,450   copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,453   copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,461   copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,465   copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,467   copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,469   copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,472   copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,474   copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,476   copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,478   copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test
2021-07-12T12:37:21,481   creating build/lib.linux-armv7l-3.9/molmod/examples
2021-07-12T12:37:21,481   creating build/lib.linux-armv7l-3.9/molmod/examples/000_units
2021-07-12T12:37:21,482   copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units
2021-07-12T12:37:21,485   copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units
2021-07-12T12:37:21,487   copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units
2021-07-12T12:37:21,489   creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:37:21,490   copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:37:21,492   copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:37:21,495   copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:37:21,497   copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:37:21,499   copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:37:21,502   copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules
2021-07-12T12:37:21,505   creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:37:21,506   copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:37:21,508   copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:37:21,510   copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:37:21,513   copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:37:21,515   copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:37:21,517   copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs
2021-07-12T12:37:21,519   creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:37:21,520   copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:37:21,523   copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:37:21,525   copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:37:21,528   copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:37:21,530   copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:37:21,534   copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:37:21,536   copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates
2021-07-12T12:37:21,538   creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:37:21,539   copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:37:21,542   copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:37:21,544   copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:37:21,546   copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:37:21,548   copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns
2021-07-12T12:37:21,558   running build_ext
2021-07-12T12:37:21,562   cythoning molmod/ext.pyx to molmod/ext.c
2021-07-12T12:37:22,193   /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-gblodk6y/molmod_88034a3c66704141b44dd741ea15519e/molmod/ext.pyx
2021-07-12T12:37:22,193     tree = Parsing.p_module(s, pxd, full_module_name)
2021-07-12T12:37:29,544   building 'molmod.ext' extension
2021-07-12T12:37:29,545   creating build/temp.linux-armv7l-3.9
2021-07-12T12:37:29,545   creating build/temp.linux-armv7l-3.9/molmod
2021-07-12T12:37:29,546   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o
2021-07-12T12:37:29,783   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o
2021-07-12T12:37:30,181   In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
2021-07-12T12:37:30,181                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2021-07-12T12:37:30,181                    from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4,
2021-07-12T12:37:30,181                    from molmod/ext.c:612:
2021-07-12T12:37:30,182   /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2021-07-12T12:37:30,182      17 | #warning "Using deprecated NumPy API, disable it with " \
2021-07-12T12:37:30,182         |  ^~~~~~~
2021-07-12T12:37:30,262   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’:
2021-07-12T12:37:30,263   molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,264    2923 |   __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0);
2021-07-12T12:37:30,264         |                                        ^~
2021-07-12T12:37:30,265   molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,265    2929 |   __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0);
2021-07-12T12:37:30,265         |                                        ^~
2021-07-12T12:37:30,266   molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,267    2963 |   __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0);
2021-07-12T12:37:30,267         |                                        ^~
2021-07-12T12:37:30,268   molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,268    2969 |   __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0);
2021-07-12T12:37:30,268         |                                        ^~
2021-07-12T12:37:30,305   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’:
2021-07-12T12:37:30,306   molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,306    3679 |   __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0);
2021-07-12T12:37:30,307         |                                          ^~
2021-07-12T12:37:30,308   molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,309    3711 |   __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0);
2021-07-12T12:37:30,309         |                                        ^~
2021-07-12T12:37:30,310   molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,310    3717 |   __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0);
2021-07-12T12:37:30,310         |                                        ^~
2021-07-12T12:37:30,356   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’:
2021-07-12T12:37:30,358   molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,358    4583 |   __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0);
2021-07-12T12:37:30,358         |                                            ^~
2021-07-12T12:37:30,405   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’:
2021-07-12T12:37:30,408   molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,408    5327 |   __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0);
2021-07-12T12:37:30,408         |                                            ^~
2021-07-12T12:37:30,456   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’:
2021-07-12T12:37:30,459   molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,459    5858 |   __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0);
2021-07-12T12:37:30,459         |                                       ^~
2021-07-12T12:37:30,518   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’:
2021-07-12T12:37:30,521   molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-12T12:37:30,522    6700 |   similarity_table_labels(__pyx_v_n, (&(*((long const  *) ( /* dim=0 */ ((char *) (((long const  *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides))));
2021-07-12T12:37:30,522         |                                      ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T12:37:30,522   In file included from molmod/ext.c:623:
2021-07-12T12:37:30,522   molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’
2021-07-12T12:37:30,522      30 | void similarity_table_labels(size_t n, long *labels, long* labels_table);
2021-07-12T12:37:30,522         |                                        ~~~~~~^~~~~~
2021-07-12T12:37:30,524   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’:
2021-07-12T12:37:30,527   molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,527    6831 |   __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0);
2021-07-12T12:37:30,527         |                                                    ^~
2021-07-12T12:37:30,542   molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2021-07-12T12:37:30,542    6929 |   similarity_table_distances(__pyx_v_n, (&(*((double const  *) ( /* dim=1 */ ((char *) (((double const  *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides))));
2021-07-12T12:37:30,542         |                                         ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-07-12T12:37:30,542   In file included from molmod/ext.c:623:
2021-07-12T12:37:30,543   molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’
2021-07-12T12:37:30,543      31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table);
2021-07-12T12:37:30,543         |                                           ~~~~~~~~^~~~~~~~~~~~~~~
2021-07-12T12:37:30,549   molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’:
2021-07-12T12:37:30,553   molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,553    7185 |   __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0);
2021-07-12T12:37:30,553         |                                               ^~
2021-07-12T12:37:30,557   molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2021-07-12T12:37:30,557    7249 |   __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0);
2021-07-12T12:37:30,557         |                                               ^~
2021-07-12T12:37:46,696   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o
2021-07-12T12:37:47,074   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o
2021-07-12T12:37:47,210   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o
2021-07-12T12:37:47,395   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o
2021-07-12T12:37:47,627   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o
2021-07-12T12:37:47,999   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so
2021-07-12T12:37:48,208   installing to build/bdist.linux-armv7l/wheel
2021-07-12T12:37:48,209   running install
2021-07-12T12:37:48,210   running install_lib
2021-07-12T12:37:48,215   creating build/bdist.linux-armv7l
2021-07-12T12:37:48,215   creating build/bdist.linux-armv7l/wheel
2021-07-12T12:37:48,218   creating build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,219   copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,222   copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,225   copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,228   copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,230   copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,233   copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,236   copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,239   copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,242   copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,245   copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,247   copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,249   copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,252   copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,254   copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,256   copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,259   copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,261   copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,293   copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,296   copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,297   copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,299   copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,302   copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,303   copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,305   copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,308   copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,312   copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,315   copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,318   copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,320   copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,323   copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,326   copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,331   creating build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,332   copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,336   copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,339   copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,341   copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,344   copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,347   copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,350   copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,353   copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,356   copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,358   copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,360   copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,364   copying build/lib.linux-armv7l-3.9/molmod/test/test_meta.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,366   copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,369   copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,372   copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,375   copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,378   copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,381   copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,385   copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,388   copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,390   copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,392   copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,395   copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,398   copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test
2021-07-12T12:37:48,400   copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,403   copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,406   copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,409   creating build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,410   copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,414   copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,416   copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,419   copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,422   copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,425   copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,428   copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,430   copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,433   copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,436   copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,439   copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,443   creating build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,444   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,446   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,449   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,452   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,454   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,457   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,459   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,461   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,464   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,466   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,468   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,471   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,473   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,476   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,478   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,481   copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,483   copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test
2021-07-12T12:37:48,485   copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,488   copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,492   copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,494   copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,497   copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,500   copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,503   copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,505   copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io
2021-07-12T12:37:48,507   copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,510   copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,513   creating build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:37:48,514   copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:37:48,517   copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:37:48,520   copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:37:48,522   copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:37:48,526   copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:37:48,543   copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:37:48,548   creating build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,549   copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,566   copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,568   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,570   copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,572   copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,574   copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,576   copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,578   copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,580   copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,582   copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,585   copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,588   copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,590   copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,593   copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,596   copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,598   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,600   copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,603   copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,605   copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,620   copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,622   copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,630   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,632   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,635   copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,637   copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,639   copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,642   copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,645   copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,647   copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,649   copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,652   copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,665   copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,667   copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,669   copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,671   copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,673   copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,675   copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,679   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,682   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,684   copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,687   copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,690   copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,692   copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,694   copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,697   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,700   copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,702   copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,710   copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,712   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,715   copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,717   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,720   copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,722   copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,724   copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,727   copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,729   copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,757   copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,760   copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,762   copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,764   copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,766   copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test
2021-07-12T12:37:48,769   copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data
2021-07-12T12:37:48,782   copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,787   creating build/bdist.linux-armv7l/wheel/molmod/examples
2021-07-12T12:37:48,789   creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:37:48,790   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:37:48,793   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:37:48,796   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:37:48,798   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:37:48,800   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:37:48,802   copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules
2021-07-12T12:37:48,805   creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:37:48,806   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:37:48,809   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:37:48,811   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:37:48,814   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:37:48,816   copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns
2021-07-12T12:37:48,819   creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:37:48,820   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:37:48,823   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:37:48,826   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:37:48,829   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:37:48,833   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:37:48,835   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:37:48,838   copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates
2021-07-12T12:37:48,841   creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:37:48,842   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:37:48,844   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:37:48,846   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:37:48,848   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:37:48,850   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:37:48,853   copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs
2021-07-12T12:37:48,856   creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units
2021-07-12T12:37:48,857   copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units
2021-07-12T12:37:48,859   copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units
2021-07-12T12:37:48,861   copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units
2021-07-12T12:37:48,863   copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,865   copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,868   copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,870   copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,873   copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,875   copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,878   copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,880   copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod
2021-07-12T12:37:48,882   running install_egg_info
2021-07-12T12:37:48,892   Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.2.1-py3.9.egg-info
2021-07-12T12:37:48,906   running install_scripts
2021-07-12T12:37:48,947   adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*")
2021-07-12T12:37:48,953   creating build/bdist.linux-armv7l/wheel/molmod-1.2.1.dist-info/WHEEL
2021-07-12T12:37:48,956   creating '/tmp/pip-wheel-vm0iwwai/molmod-1.2.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2021-07-12T12:37:48,959   adding 'molmod/__init__.py'
2021-07-12T12:37:48,961   adding 'molmod/binning.py'
2021-07-12T12:37:48,963   adding 'molmod/bonds.py'
2021-07-12T12:37:48,965   adding 'molmod/clusters.py'
2021-07-12T12:37:48,966   adding 'molmod/common.c'
2021-07-12T12:37:48,967   adding 'molmod/common.h'
2021-07-12T12:37:48,969   adding 'molmod/constants.py'
2021-07-12T12:37:49,193   adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so'
2021-07-12T12:37:49,205   adding 'molmod/ext.pyx'
2021-07-12T12:37:49,206   adding 'molmod/ff.c'
2021-07-12T12:37:49,207   adding 'molmod/ff.h'
2021-07-12T12:37:49,209   adding 'molmod/ff.pxd'
2021-07-12T12:37:49,210   adding 'molmod/graphs.c'
2021-07-12T12:37:49,211   adding 'molmod/graphs.h'
2021-07-12T12:37:49,212   adding 'molmod/graphs.pxd'
2021-07-12T12:37:49,223   adding 'molmod/graphs.py'
2021-07-12T12:37:49,226   adding 'molmod/ic.py'
2021-07-12T12:37:49,228   adding 'molmod/isotopes.py'
2021-07-12T12:37:49,230   adding 'molmod/log.py'
2021-07-12T12:37:49,239   adding 'molmod/minimizer.py'
2021-07-12T12:37:49,242   adding 'molmod/molecular_graphs.py'
2021-07-12T12:37:49,244   adding 'molmod/molecules.c'
2021-07-12T12:37:49,245   adding 'molmod/molecules.h'
2021-07-12T12:37:49,246   adding 'molmod/molecules.pxd'
2021-07-12T12:37:49,249   adding 'molmod/molecules.py'
2021-07-12T12:37:49,251   adding 'molmod/pairff.py'
2021-07-12T12:37:49,253   adding 'molmod/periodic.py'
2021-07-12T12:37:49,254   adding 'molmod/quaternions.py'
2021-07-12T12:37:49,257   adding 'molmod/randomize.py'
2021-07-12T12:37:49,258   adding 'molmod/similarity.c'
2021-07-12T12:37:49,260   adding 'molmod/similarity.h'
2021-07-12T12:37:49,261   adding 'molmod/similarity.pxd'
2021-07-12T12:37:49,262   adding 'molmod/similarity.py'
2021-07-12T12:37:49,264   adding 'molmod/symmetry.py'
2021-07-12T12:37:49,266   adding 'molmod/toyff.py'
2021-07-12T12:37:49,268   adding 'molmod/transformations.py'
2021-07-12T12:37:49,270   adding 'molmod/unit_cells.c'
2021-07-12T12:37:49,271   adding 'molmod/unit_cells.h'
2021-07-12T12:37:49,272   adding 'molmod/unit_cells.pxd'
2021-07-12T12:37:49,275   adding 'molmod/unit_cells.py'
2021-07-12T12:37:49,276   adding 'molmod/units.py'
2021-07-12T12:37:49,279   adding 'molmod/utils.py'
2021-07-12T12:37:49,280   adding 'molmod/vectors.py'
2021-07-12T12:37:49,281   adding 'molmod/version.py'
2021-07-12T12:37:49,283   adding 'molmod/zmatrix.py'
2021-07-12T12:37:49,285   adding 'molmod/data/bonds.csv'
2021-07-12T12:37:49,288   adding 'molmod/data/bonds.ods'
2021-07-12T12:37:49,372   adding 'molmod/data/mass.mas03'
2021-07-12T12:37:49,456   adding 'molmod/data/nubtab03.asc'
2021-07-12T12:37:49,462   adding 'molmod/data/periodic.csv'
2021-07-12T12:37:49,465   adding 'molmod/data/periodic.ods'
2021-07-12T12:37:49,480   adding 'molmod/data/toyff_angles.txt'
2021-07-12T12:37:49,487   adding 'molmod/data/test/1LJL_Cys10.cml'
2021-07-12T12:37:49,620   adding 'molmod/data/test/1TOH.b3lyp.fchk'
2021-07-12T12:37:49,626   adding 'molmod/data/test/1TOH.b3lyp.trim.fchk'
2021-07-12T12:37:49,627   adding 'molmod/data/test/5ringOH.xyz'
2021-07-12T12:37:49,628   adding 'molmod/data/test/CID_22898828.sdf'
2021-07-12T12:37:49,872   adding 'molmod/data/test/PCGamess_PUNCH'
2021-07-12T12:37:49,880   adding 'molmod/data/test/SID_31646545.sdf'
2021-07-12T12:37:49,881   adding 'molmod/data/test/SID_31646548.sdf'
2021-07-12T12:37:49,883   adding 'molmod/data/test/SID_40363570.sdf'
2021-07-12T12:37:49,884   adding 'molmod/data/test/SID_40363571.sdf'
2021-07-12T12:37:49,885   adding 'molmod/data/test/SID_41893278.sdf'
2021-07-12T12:37:49,887   adding 'molmod/data/test/SID_41893280.sdf'
2021-07-12T12:37:49,888   adding 'molmod/data/test/SID_54258192.sdf'
2021-07-12T12:37:49,889   adding 'molmod/data/test/SID_55127927.sdf'
2021-07-12T12:37:49,890   adding 'molmod/data/test/SID_55488598.sdf'
2021-07-12T12:37:49,892   adding 'molmod/data/test/SID_56274343.sdf'
2021-07-12T12:37:49,893   adding 'molmod/data/test/TRAJECTORY_H2_CPMD'
2021-07-12T12:37:49,897   adding 'molmod/data/test/alanine.cube'
2021-07-12T12:37:49,898   adding 'molmod/data/test/argon.xyz'
2021-07-12T12:37:49,974   adding 'molmod/data/test/bartek.atrj'
2021-07-12T12:37:49,978   adding 'molmod/data/test/benzene.xyz'
2021-07-12T12:37:49,979   adding 'molmod/data/test/butane.xyz'
2021-07-12T12:37:49,980   adding 'molmod/data/test/caplayer.cml'
2021-07-12T12:37:50,047   adding 'molmod/data/test/crystal_api.out'
2021-07-12T12:37:50,051   adding 'molmod/data/test/cyclopentane.xyz'
2021-07-12T12:37:50,052   adding 'molmod/data/test/dinitrogen.xyz'
2021-07-12T12:37:50,054   adding 'molmod/data/test/dlpoly_HISTORY'
2021-07-12T12:37:50,055   adding 'molmod/data/test/dlpoly_HISTORY_an2'
2021-07-12T12:37:50,060   adding 'molmod/data/test/dlpoly_OUTPUT'
2021-07-12T12:37:50,061   adding 'molmod/data/test/dopamine.xyz'
2021-07-12T12:37:50,062   adding 'molmod/data/test/ethane.xyz'
2021-07-12T12:37:50,064   adding 'molmod/data/test/ethene.xyz'
2021-07-12T12:37:50,065   adding 'molmod/data/test/ethene_ethyl_trans.xyz'
2021-07-12T12:37:50,066   adding 'molmod/data/test/example.sdf'
2021-07-12T12:37:50,067   adding 'molmod/data/test/formol.xyz'
2021-07-12T12:37:50,069   adding 'molmod/data/test/funny.xyz'
2021-07-12T12:37:50,070   adding 'molmod/data/test/h3zrosihohosioh3.xyz'
2021-07-12T12:37:50,100   adding 'molmod/data/test/il2.pdb'
2021-07-12T12:37:50,104   adding 'molmod/data/test/lammps_dump.txt'
2021-07-12T12:37:50,105   adding 'molmod/data/test/lau.xyz'
2021-07-12T12:37:50,106   adding 'molmod/data/test/octane.xyz'
2021-07-12T12:37:50,108   adding 'molmod/data/test/oh3siozroh3.xyz'
2021-07-12T12:37:50,109   adding 'molmod/data/test/opt_5ring10T.xyz'
2021-07-12T12:37:50,110   adding 'molmod/data/test/opt_5ring12T.xyz'
2021-07-12T12:37:50,112   adding 'molmod/data/test/opt_6_6ring.xyz'
2021-07-12T12:37:50,113   adding 'molmod/data/test/opt_6ring.xyz'
2021-07-12T12:37:50,114   adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz'
2021-07-12T12:37:50,116   adding 'molmod/data/test/pentapeptide.psf'
2021-07-12T12:37:50,118   adding 'molmod/data/test/precursor.xyz'
2021-07-12T12:37:50,119   adding 'molmod/data/test/probes.xyz'
2021-07-12T12:37:50,120   adding 'molmod/data/test/tea.xyz'
2021-07-12T12:37:50,121   adding 'molmod/data/test/tetra.xyz'
2021-07-12T12:37:50,142   adding 'molmod/data/test/thf.psf'
2021-07-12T12:37:50,150   adding 'molmod/data/test/thf.xyz'
2021-07-12T12:37:50,151   adding 'molmod/data/test/thf_64.cell'
2021-07-12T12:37:50,153   adding 'molmod/data/test/thf_single.xyz'
2021-07-12T12:37:50,154   adding 'molmod/data/test/tpa.xyz'
2021-07-12T12:37:50,155   adding 'molmod/data/test/water.xyz'
2021-07-12T12:37:50,156   adding 'molmod/data/test/water2.gro'
2021-07-12T12:37:50,157   adding 'molmod/data/test/water_md.inp'
2021-07-12T12:37:50,158   adding 'molmod/data/test/zr4o8-3.xyz'
2021-07-12T12:37:50,160   adding 'molmod/examples/000_units/a_reaction.py'
2021-07-12T12:37:50,162   adding 'molmod/examples/000_units/b_chbond.py'
2021-07-12T12:37:50,163   adding 'molmod/examples/000_units/c_h2rot.py'
2021-07-12T12:37:50,165   adding 'molmod/examples/001_molecules/a_convert.py'
2021-07-12T12:37:50,166   adding 'molmod/examples/001_molecules/b_com.py'
2021-07-12T12:37:50,167   adding 'molmod/examples/001_molecules/c_carbon.py'
2021-07-12T12:37:50,169   adding 'molmod/examples/001_molecules/d_size.py'
2021-07-12T12:37:50,170   adding 'molmod/examples/001_molecules/e_shape.py'
2021-07-12T12:37:50,172   adding 'molmod/examples/001_molecules/ibuprofen.sdf'
2021-07-12T12:37:50,174   adding 'molmod/examples/002_graphs/a_graphs.py'
2021-07-12T12:37:50,175   adding 'molmod/examples/002_graphs/b_neighbors.py'
2021-07-12T12:37:50,176   adding 'molmod/examples/002_graphs/c_distances.py'
2021-07-12T12:37:50,178   adding 'molmod/examples/002_graphs/caffeine.xyz'
2021-07-12T12:37:50,179   adding 'molmod/examples/002_graphs/d_symmetries.py'
2021-07-12T12:37:50,180   adding 'molmod/examples/002_graphs/ethanol.xyz'
2021-07-12T12:37:50,182   adding 'molmod/examples/003_internal_coordinates/a_bond_length.py'
2021-07-12T12:37:50,183   adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py'
2021-07-12T12:37:50,185   adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py'
2021-07-12T12:37:50,187   adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py'
2021-07-12T12:37:50,197   adding 'molmod/examples/003_internal_coordinates/dopamine.fchk'
2021-07-12T12:37:50,199   adding 'molmod/examples/003_internal_coordinates/dopamine.xyz'
2021-07-12T12:37:50,200   adding 'molmod/examples/003_internal_coordinates/propane.xyz'
2021-07-12T12:37:50,202   adding 'molmod/examples/004_patterns/a_propane_types.py'
2021-07-12T12:37:50,203   adding 'molmod/examples/004_patterns/b_dopamine_types.py'
2021-07-12T12:37:50,204   adding 'molmod/examples/004_patterns/dopamine.xyz'
2021-07-12T12:37:50,206   adding 'molmod/examples/004_patterns/mfi_fragment.xyz'
2021-07-12T12:37:50,207   adding 'molmod/examples/004_patterns/propane.xyz'
2021-07-12T12:37:50,209   adding 'molmod/io/__init__.py'
2021-07-12T12:37:50,211   adding 'molmod/io/atrj.py'
2021-07-12T12:37:50,212   adding 'molmod/io/chk.py'
2021-07-12T12:37:50,214   adding 'molmod/io/cml.py'
2021-07-12T12:37:50,215   adding 'molmod/io/common.py'
2021-07-12T12:37:50,217   adding 'molmod/io/cp2k.py'
2021-07-12T12:37:50,219   adding 'molmod/io/cpmd.py'
2021-07-12T12:37:50,220   adding 'molmod/io/crystal.py'
2021-07-12T12:37:50,222   adding 'molmod/io/cube.py'
2021-07-12T12:37:50,224   adding 'molmod/io/dlpoly.py'
2021-07-12T12:37:50,226   adding 'molmod/io/fchk.py'
2021-07-12T12:37:50,228   adding 'molmod/io/gamess.py'
2021-07-12T12:37:50,229   adding 'molmod/io/gromacs.py'
2021-07-12T12:37:50,231   adding 'molmod/io/lammps.py'
2021-07-12T12:37:50,233   adding 'molmod/io/number_state.py'
2021-07-12T12:37:50,234   adding 'molmod/io/pdb.py'
2021-07-12T12:37:50,237   adding 'molmod/io/psf.py'
2021-07-12T12:37:50,238   adding 'molmod/io/sdf.py'
2021-07-12T12:37:50,240   adding 'molmod/io/xyz.py'
2021-07-12T12:37:50,242   adding 'molmod/io/test/__init__.py'
2021-07-12T12:37:50,243   adding 'molmod/io/test/test_atrj.py'
2021-07-12T12:37:50,244   adding 'molmod/io/test/test_cml.py'
2021-07-12T12:37:50,246   adding 'molmod/io/test/test_cp2k.py'
2021-07-12T12:37:50,247   adding 'molmod/io/test/test_cpmd.py'
2021-07-12T12:37:50,248   adding 'molmod/io/test/test_crystal.py'
2021-07-12T12:37:50,250   adding 'molmod/io/test/test_cube.py'
2021-07-12T12:37:50,251   adding 'molmod/io/test/test_dlpoly.py'
2021-07-12T12:37:50,253   adding 'molmod/io/test/test_fchk.py'
2021-07-12T12:37:50,254   adding 'molmod/io/test/test_gamess.py'
2021-07-12T12:37:50,255   adding 'molmod/io/test/test_gromacs.py'
2021-07-12T12:37:50,256   adding 'molmod/io/test/test_lammps.py'
2021-07-12T12:37:50,258   adding 'molmod/io/test/test_number_state.py'
2021-07-12T12:37:50,259   adding 'molmod/io/test/test_pdb.py'
2021-07-12T12:37:50,260   adding 'molmod/io/test/test_psf.py'
2021-07-12T12:37:50,262   adding 'molmod/io/test/test_sdf.py'
2021-07-12T12:37:50,263   adding 'molmod/io/test/test_xyz.py'
2021-07-12T12:37:50,265   adding 'molmod/test/__init__.py'
2021-07-12T12:37:50,266   adding 'molmod/test/common.py'
2021-07-12T12:37:50,268   adding 'molmod/test/test_binning.py'
2021-07-12T12:37:50,269   adding 'molmod/test/test_clusters.py'
2021-07-12T12:37:50,271   adding 'molmod/test/test_data.py'
2021-07-12T12:37:50,274   adding 'molmod/test/test_graphs.py'
2021-07-12T12:37:50,275   adding 'molmod/test/test_ic.py'
2021-07-12T12:37:50,277   adding 'molmod/test/test_log.py'
2021-07-12T12:37:50,278   adding 'molmod/test/test_meta.py'
2021-07-12T12:37:50,280   adding 'molmod/test/test_minimizer.py'
2021-07-12T12:37:50,283   adding 'molmod/test/test_molecular_graphs.py'
2021-07-12T12:37:50,285   adding 'molmod/test/test_molecules.py'
2021-07-12T12:37:50,287   adding 'molmod/test/test_pairff.py'
2021-07-12T12:37:50,288   adding 'molmod/test/test_quaternions.py'
2021-07-12T12:37:50,290   adding 'molmod/test/test_randomize.py'
2021-07-12T12:37:50,291   adding 'molmod/test/test_similarity.py'
2021-07-12T12:37:50,293   adding 'molmod/test/test_symmetry.py'
2021-07-12T12:37:50,294   adding 'molmod/test/test_toyff.py'
2021-07-12T12:37:50,296   adding 'molmod/test/test_transformations.py'
2021-07-12T12:37:50,299   adding 'molmod/test/test_unit_cells.py'
2021-07-12T12:37:50,300   adding 'molmod/test/test_units.py'
2021-07-12T12:37:50,302   adding 'molmod/test/test_utils.py'
2021-07-12T12:37:50,303   adding 'molmod/test/test_vectors.py'
2021-07-12T12:37:50,304   adding 'molmod/test/test_zmatrix.py'
2021-07-12T12:37:50,312   adding 'molmod-1.2.1.dist-info/LICENSE.txt'
2021-07-12T12:37:50,313   adding 'molmod-1.2.1.dist-info/METADATA'
2021-07-12T12:37:50,314   adding 'molmod-1.2.1.dist-info/WHEEL'
2021-07-12T12:37:50,315   adding 'molmod-1.2.1.dist-info/top_level.txt'
2021-07-12T12:37:50,318   adding 'molmod-1.2.1.dist-info/RECORD'
2021-07-12T12:37:50,352   removing build/bdist.linux-armv7l/wheel
2021-07-12T12:37:50,813   Building wheel for molmod (setup.py): finished with status 'done'
2021-07-12T12:37:50,846   Created wheel for molmod: filename=molmod-1.2.1-cp39-cp39-linux_armv7l.whl size=1960923 sha256=ac836463734c5c9f0baad9f4cd509b9bfec96fa475087a4449ae69c9d553e8c0
2021-07-12T12:37:50,846   Stored in directory: /tmp/pip-ephem-wheel-cache-usw5_ajo/wheels/71/3e/c4/b8c9b34836dd1a56374d7e4465ed79cb22195857a44ba38564
2021-07-12T12:37:50,863 Successfully built molmod
2021-07-12T12:37:50,925 Removed build tracker: '/tmp/pip-req-tracker-wn5sjxha'