2021-07-12T12:39:32,690 Created temporary directory: /tmp/pip-ephem-wheel-cache-nkcqwsf8 2021-07-12T12:39:32,693 Created temporary directory: /tmp/pip-req-tracker-70m10hot 2021-07-12T12:39:32,694 Initialized build tracking at /tmp/pip-req-tracker-70m10hot 2021-07-12T12:39:32,694 Created build tracker: /tmp/pip-req-tracker-70m10hot 2021-07-12T12:39:32,694 Entered build tracker: /tmp/pip-req-tracker-70m10hot 2021-07-12T12:39:32,695 Created temporary directory: /tmp/pip-wheel-vh08hbqe 2021-07-12T12:39:32,727 1 location(s) to search for versions of gat: 2021-07-12T12:39:32,727 * https://pypi.org/simple/gat/ 2021-07-12T12:39:32,728 Fetching project page and analyzing links: https://pypi.org/simple/gat/ 2021-07-12T12:39:32,728 Getting page https://pypi.org/simple/gat/ 2021-07-12T12:39:32,730 Found index url https://pypi.org/simple 2021-07-12T12:39:32,916 Found link https://files.pythonhosted.org/packages/be/34/ecadd24a9bddad07a74b99483aceaec524ad1bed92933ec264f44051627b/gat-0.1.tar.gz#sha256=3c7add7953a3cc64570ed1bc1ce87054db85d28a61382d93a0f5f79ae9e86e9f (from https://pypi.org/simple/gat/), version: 0.1 2021-07-12T12:39:32,916 Found link https://files.pythonhosted.org/packages/f3/ef/2af035c07eb1809d227f768e6bc765ba93d79e12575e3bd968463d3ce118/gat-0.2.tar.gz#sha256=c0a1823ff9993b02988817e0f5201e5bb1da47a5f0adddeee43a8a5d54dff494 (from https://pypi.org/simple/gat/), version: 0.2 2021-07-12T12:39:32,916 Found link https://files.pythonhosted.org/packages/2e/d8/0173f218fc3ae63114c3ac7b58846aca1b223d7addc861265c004ff2f7ce/gat-1.1.tar.gz#sha256=d7c31d7b1a4f97182b52f895a64bede4c38da315e1bdcae2b3ec7e9548ada046 (from https://pypi.org/simple/gat/), version: 1.1 2021-07-12T12:39:32,917 Found link https://files.pythonhosted.org/packages/3d/8e/6156471a92f77b99ac5d5e476da2562db2a960fd965545c155d8cd321e00/gat-1.2.tar.gz#sha256=55d84003d2d34d8aba5499351e407a0def9a50c24ead4a567245fc560b3840d4 (from https://pypi.org/simple/gat/), version: 1.2 2021-07-12T12:39:32,917 Found link https://files.pythonhosted.org/packages/7b/aa/3417ecbf21b216bff79e02a23f7bdef070a6251eafe98793b0691bf2f425/gat-1.2.1.tar.gz#sha256=64f8bf40e4db6047e8241b941e442b1a37b305c74ac4e4525d209e0d13ab71cc (from https://pypi.org/simple/gat/), version: 1.2.1 2021-07-12T12:39:32,917 Found link https://files.pythonhosted.org/packages/52/99/7fa1bd580335036e28ca2a2af491323889c445f4a2e0e6495f92159172e4/gat-1.2.2.tar.gz#sha256=e34d80169289e938aefbbebc4c50a3d5cdc8b38bab2cf63ae9716089bfda5968 (from https://pypi.org/simple/gat/), version: 1.2.2 2021-07-12T12:39:32,918 Found link https://files.pythonhosted.org/packages/01/ed/d8d67087f877efebf80fefafb8b871d3f081d497e2ce9198f6b733d0a76c/gat-1.3.0.tar.gz#sha256=e60e6fd8c9116dc8e76fa71f174dddb7d37f962e4320294cfc6c4aebec8aede4 (from https://pypi.org/simple/gat/), version: 1.3.0 2021-07-12T12:39:32,918 Found link https://files.pythonhosted.org/packages/32/3b/379a4aab16fd4c225b39cb62c67b24e09d35cec68b50d7a7372f8d5a4b92/gat-1.3.1.tar.gz#sha256=36ca788dea02eab62beba8fab7d7abaf9f41bd8b6af2df8371f1009f9fb3500f (from https://pypi.org/simple/gat/), version: 1.3.1 2021-07-12T12:39:32,918 Found link https://files.pythonhosted.org/packages/72/9d/6fdbeac74825fee621d61d2d305744591aa5fbf67a9f4c7b9233fd7f7322/gat-1.3.2.tar.gz#sha256=839fa3bff62c7a21194d0d9bcda6e4eac8bfc3ce956ac3e7aa0795d72784ce3e (from https://pypi.org/simple/gat/), version: 1.3.2 2021-07-12T12:39:32,918 Found link https://files.pythonhosted.org/packages/50/f7/bfb0ff1373c78ff58d0c51b2a9851582c6f2ef681b99a1280325031c6a90/gat-1.3.3.tar.gz#sha256=0964e454a8cfd388172a40be4bf3d9129ea88c39ab83a31655d81db70e452967 (from https://pypi.org/simple/gat/), version: 1.3.3 2021-07-12T12:39:32,919 Found link https://files.pythonhosted.org/packages/10/d1/e39e8f205cc15f047c8b6af6970dbbf53678b2c1e5623bec693578769899/gat-1.3.4.tar.gz#sha256=b35826959a055d090170c24eb3ac3cd0fc53f0e443c0c9792bc4faa73df50297 (from https://pypi.org/simple/gat/), version: 1.3.4 2021-07-12T12:39:32,919 Found link https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a (from https://pypi.org/simple/gat/), version: 1.3.5 2021-07-12T12:39:32,919 Found link https://files.pythonhosted.org/packages/50/73/ec45938cab4c86e4fd9ad967276ceab2c11aed9fcb5325cf8cec1a4d1e4c/gat-1.3.6.tar.gz#sha256=1f4a3357f326fab5cbcda3b6de049cb00bb49a7e570243fc7db6c76c2bb2df2a (from https://pypi.org/simple/gat/), version: 1.3.6 2021-07-12T12:39:32,919 Skipping link: not a file: https://pypi.org/simple/gat/ 2021-07-12T12:39:32,938 Given no hashes to check 1 links for project 'gat': discarding no candidates 2021-07-12T12:39:32,957 Collecting gat==1.3.5 2021-07-12T12:39:32,959 Created temporary directory: /tmp/pip-unpack-ys8u1846 2021-07-12T12:39:33,139 Downloading gat-1.3.5.tar.gz (89 kB) 2021-07-12T12:39:33,274 Added gat==1.3.5 from https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a to build tracker '/tmp/pip-req-tracker-70m10hot' 2021-07-12T12:39:33,275 Running setup.py (path:/tmp/pip-wheel-vh08hbqe/gat_5acc3b86fd27475db4c776f09fe15281/setup.py) egg_info for package gat 2021-07-12T12:39:33,275 Created temporary directory: /tmp/pip-pip-egg-info-wvfy47wx 2021-07-12T12:39:33,276 Running command python setup.py egg_info 2021-07-12T12:39:34,611 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-12T12:39:34,612 warnings.warn( 2021-07-12T12:39:34,763 running egg_info 2021-07-12T12:39:34,765 creating /tmp/pip-pip-egg-info-wvfy47wx/gat.egg-info 2021-07-12T12:39:34,766 writing /tmp/pip-pip-egg-info-wvfy47wx/gat.egg-info/PKG-INFO 2021-07-12T12:39:34,769 writing dependency_links to /tmp/pip-pip-egg-info-wvfy47wx/gat.egg-info/dependency_links.txt 2021-07-12T12:39:34,771 writing requirements to /tmp/pip-pip-egg-info-wvfy47wx/gat.egg-info/requires.txt 2021-07-12T12:39:34,772 writing top-level names to /tmp/pip-pip-egg-info-wvfy47wx/gat.egg-info/top_level.txt 2021-07-12T12:39:34,774 writing manifest file '/tmp/pip-pip-egg-info-wvfy47wx/gat.egg-info/SOURCES.txt' 2021-07-12T12:39:34,957 reading manifest file '/tmp/pip-pip-egg-info-wvfy47wx/gat.egg-info/SOURCES.txt' 2021-07-12T12:39:34,959 reading manifest template 'MANIFEST.in' 2021-07-12T12:39:34,960 warning: no files found matching 'COPYING' 2021-07-12T12:39:34,961 warning: no files found matching 'INSTALL' 2021-07-12T12:39:34,961 warning: no files found matching 'KNOWN_BUGS' 2021-07-12T12:39:34,962 warning: no files found matching 'THANKS' 2021-07-12T12:39:34,969 writing manifest file '/tmp/pip-pip-egg-info-wvfy47wx/gat.egg-info/SOURCES.txt' 2021-07-12T12:39:35,081 Source in /tmp/pip-wheel-vh08hbqe/gat_5acc3b86fd27475db4c776f09fe15281 has version 1.3.5, which satisfies requirement gat==1.3.5 from https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a 2021-07-12T12:39:35,082 Removed gat==1.3.5 from https://files.pythonhosted.org/packages/ef/87/3a03ea89abd49690f0c5115bcfb232212475d8e642d65bc886e2498f7b96/gat-1.3.5.tar.gz#sha256=95a268f64e555d14d2af7621cd488486ce4a791236e6a43af46dbbf4051b4d1a from build tracker '/tmp/pip-req-tracker-70m10hot' 2021-07-12T12:39:35,086 Created temporary directory: /tmp/pip-unpack-zvp7csix 2021-07-12T12:39:35,087 Building wheels for collected packages: gat 2021-07-12T12:39:35,091 Created temporary directory: /tmp/pip-wheel-tum0ozr8 2021-07-12T12:39:35,091 Building wheel for gat (setup.py): started 2021-07-12T12:39:35,092 Destination directory: /tmp/pip-wheel-tum0ozr8 2021-07-12T12:39:35,092 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-vh08hbqe/gat_5acc3b86fd27475db4c776f09fe15281/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-vh08hbqe/gat_5acc3b86fd27475db4c776f09fe15281/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-tum0ozr8 2021-07-12T12:39:36,415 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:697: UserWarning: Usage of dash-separated 'distribution-name' will not be supported in future versions. Please use the underscore name 'distribution_name' instead 2021-07-12T12:39:36,415 warnings.warn( 2021-07-12T12:39:36,576 running bdist_wheel 2021-07-12T12:39:36,581 running build 2021-07-12T12:39:36,582 running build_py 2021-07-12T12:39:36,716 creating build 2021-07-12T12:39:36,716 creating build/lib.linux-armv7l-3.9 2021-07-12T12:39:36,717 creating build/lib.linux-armv7l-3.9/gat 2021-07-12T12:39:36,718 copying gat/IO.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T12:39:36,721 copying gat/IOTools.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T12:39:36,723 copying gat/Stats.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T12:39:36,726 copying gat/__init__.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T12:39:36,729 copying gat/Bed.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T12:39:36,732 copying gat/Experiment.py -> build/lib.linux-armv7l-3.9/gat 2021-07-12T12:39:36,734 running build_ext 2021-07-12T12:39:36,801 cythoning gat/CoordinateList.pyx to gat/CoordinateList.c 2021-07-12T12:39:37,417 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-vh08hbqe/gat_5acc3b86fd27475db4c776f09fe15281/gat/CoordinateList.pxd 2021-07-12T12:39:37,417 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T12:39:37,692 cythoning gat/SegmentList.pyx to gat/SegmentList.c 2021-07-12T12:39:37,698 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-vh08hbqe/gat_5acc3b86fd27475db4c776f09fe15281/gat/SegmentList.pxd 2021-07-12T12:39:37,699 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T12:39:43,762 cythoning gat/PositionList.pyx to gat/PositionList.c 2021-07-12T12:39:43,769 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-vh08hbqe/gat_5acc3b86fd27475db4c776f09fe15281/gat/PositionList.pxd 2021-07-12T12:39:43,769 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T12:39:46,676 cythoning gat/Engine.pyx to gat/Engine.c 2021-07-12T12:39:46,682 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-vh08hbqe/gat_5acc3b86fd27475db4c776f09fe15281/gat/Engine.pxd 2021-07-12T12:39:46,682 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T12:39:56,163 building 'gat.CoordinateList' extension 2021-07-12T12:39:56,164 creating build/temp.linux-armv7l-3.9 2021-07-12T12:39:56,164 creating build/temp.linux-armv7l-3.9/gat 2021-07-12T12:39:56,165 creating build/temp.linux-armv7l-3.9/utils 2021-07-12T12:39:56,165 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/CoordinateList.c -o build/temp.linux-armv7l-3.9/gat/CoordinateList.o 2021-07-12T12:39:59,043 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T12:39:59,185 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T12:39:59,185 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T12:39:59,185 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T12:39:59,185 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T12:39:59,186 | | 2021-07-12T12:39:59,186 | size_t * {aka unsigned int *} 2021-07-12T12:39:59,186 In file included from /usr/include/zlib.h:34, 2021-07-12T12:39:59,186 from utils/gat_utils.c:2: 2021-07-12T12:39:59,187 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T12:39:59,187 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T12:39:59,187 | ^~ 2021-07-12T12:39:59,313 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/CoordinateList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:39:59,448 building 'gat.SegmentList' extension 2021-07-12T12:39:59,449 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/SegmentList.c -o build/temp.linux-armv7l-3.9/gat/SegmentList.o 2021-07-12T12:39:59,845 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T12:39:59,845 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T12:39:59,845 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T12:39:59,846 from gat/SegmentList.c:623: 2021-07-12T12:39:59,846 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T12:39:59,846 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T12:39:59,846 | ^~~~~~~ 2021-07-12T12:39:59,980 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim_ends’: 2021-07-12T12:39:59,984 gat/SegmentList.c:7383:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-12T12:39:59,984 7383 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-12T12:39:59,984 | ^ 2021-07-12T12:39:59,984 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T12:39:59,984 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T12:39:59,984 | ^ 2021-07-12T12:39:59,990 gat/SegmentList.c:7433:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:39:59,990 7433 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:39:59,990 | ^~ 2021-07-12T12:39:59,996 gat/SegmentList.c:7568:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:39:59,996 7568 | __pyx_t_10 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:39:59,996 | ^~ 2021-07-12T12:40:00,004 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__resize’: 2021-07-12T12:40:00,009 gat/SegmentList.c:7887:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,009 7887 | if (unlikely(!((__pyx_v_nsegments >= __pyx_v_self->nsegments) != 0))) { 2021-07-12T12:40:00,009 | ^~ 2021-07-12T12:40:00,010 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T12:40:00,010 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T12:40:00,010 | ^ 2021-07-12T12:40:00,013 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_insert’: 2021-07-12T12:40:00,019 gat/SegmentList.c:8135:19: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-12T12:40:00,019 8135 | if (((__pyx_t_4 > __pyx_t_5) != 0)) { 2021-07-12T12:40:00,019 | ^ 2021-07-12T12:40:00,027 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_trim’: 2021-07-12T12:40:00,032 gat/SegmentList.c:8396:139: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} [-Wsign-compare] 2021-07-12T12:40:00,032 8396 | if (unlikely(!((((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0) > __pyx_v_s) != 0))) { 2021-07-12T12:40:00,032 | ^ 2021-07-12T12:40:00,032 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T12:40:00,033 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T12:40:00,033 | ^ 2021-07-12T12:40:00,038 gat/SegmentList.c:8464:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,038 8464 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,038 | ^~ 2021-07-12T12:40:00,044 gat/SegmentList.c:8541:31: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,044 8541 | __pyx_t_9 = ((__pyx_v_p == (__pyx_v_self->segments[__pyx_v_idx]).start) != 0); 2021-07-12T12:40:00,045 | ^~ 2021-07-12T12:40:00,049 gat/SegmentList.c:8649:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,049 8649 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,049 | ^~ 2021-07-12T12:40:00,057 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_normalize’: 2021-07-12T12:40:00,062 gat/SegmentList.c:8933:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,062 8933 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,062 | ^ 2021-07-12T12:40:00,068 gat/SegmentList.c:8961:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,068 8961 | __pyx_t_5 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,068 | ^~ 2021-07-12T12:40:00,073 gat/SegmentList.c:9030:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,073 9030 | __pyx_t_5 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,073 | ^ 2021-07-12T12:40:00,080 gat/SegmentList.c:9107:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,080 9107 | if (unlikely(!((__pyx_v_insertion_idx < __pyx_v_self->nsegments) != 0))) { 2021-07-12T12:40:00,080 | ^ 2021-07-12T12:40:00,080 gat/SegmentList.c:818:43: note: in definition of macro ‘unlikely’ 2021-07-12T12:40:00,080 818 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T12:40:00,080 | ^ 2021-07-12T12:40:00,087 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_merge’: 2021-07-12T12:40:00,091 gat/SegmentList.c:9449:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,092 9449 | __pyx_t_7 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,092 | ^ 2021-07-12T12:40:00,098 gat/SegmentList.c:9477:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,098 9477 | __pyx_t_6 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,098 | ^~ 2021-07-12T12:40:00,103 gat/SegmentList.c:9546:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,103 9546 | __pyx_t_6 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,103 | ^ 2021-07-12T12:40:00,112 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_check’: 2021-07-12T12:40:00,117 gat/SegmentList.c:9958:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,117 9958 | for (__pyx_v_idx = 1; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T12:40:00,117 | ^ 2021-07-12T12:40:00,122 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList__getInsertionPoint’: 2021-07-12T12:40:00,127 gat/SegmentList.c:10294:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,127 10294 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,127 | ^~ 2021-07-12T12:40:00,140 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlap’: 2021-07-12T12:40:00,146 gat/SegmentList.c:11010:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,146 11010 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,146 | ^~ 2021-07-12T12:40:00,151 gat/SegmentList.c:11078:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,151 11078 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,151 | ^ 2021-07-12T12:40:00,154 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getOverlappingSegments’: 2021-07-12T12:40:00,160 gat/SegmentList.c:11189:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,160 11189 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,160 | ^~ 2021-07-12T12:40:00,166 gat/SegmentList.c:11269:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,166 11269 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,166 | ^ 2021-07-12T12:40:00,195 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_overlapWithSegments’: 2021-07-12T12:40:00,201 gat/SegmentList.c:12032:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,201 12032 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,201 | ^ 2021-07-12T12:40:00,207 gat/SegmentList.c:12038:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,207 12038 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T12:40:00,207 | ^ 2021-07-12T12:40:00,218 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersectionWithSegments’: 2021-07-12T12:40:00,224 gat/SegmentList.c:12580:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,225 12580 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,225 | ^ 2021-07-12T12:40:00,231 gat/SegmentList.c:12586:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,231 12586 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T12:40:00,231 | ^ 2021-07-12T12:40:00,240 gat/SegmentList.c:12742:50: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2021-07-12T12:40:00,240 12742 | __pyx_t_8 = (__pyx_v_other_segment.start <= __pyx_t_11); 2021-07-12T12:40:00,241 | ^~ 2021-07-12T12:40:00,246 gat/SegmentList.c:12752:35: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,247 12752 | __pyx_t_8 = (__pyx_t_11 < __pyx_v_other_segment.end); 2021-07-12T12:40:00,247 | ^ 2021-07-12T12:40:00,258 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_36getLengthDistribution’: 2021-07-12T12:40:00,264 gat/SegmentList.c:13254:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,265 13254 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_15; __pyx_v_idx++) { 2021-07-12T12:40:00,265 | ^ 2021-07-12T12:40:00,277 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_truncate’: 2021-07-12T12:40:00,283 gat/SegmentList.c:13543:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,284 13543 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T12:40:00,284 | ^ 2021-07-12T12:40:00,291 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_subtract’: 2021-07-12T12:40:00,297 gat/SegmentList.c:13929:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,298 13929 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,298 | ^ 2021-07-12T12:40:00,305 gat/SegmentList.c:13935:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,305 13935 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T12:40:00,305 | ^ 2021-07-12T12:40:00,314 gat/SegmentList.c:13947:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,315 13947 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-12T12:40:00,315 | ^~ 2021-07-12T12:40:00,322 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_summarize’: 2021-07-12T12:40:00,329 gat/SegmentList.c:14519:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,329 14519 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T12:40:00,329 | ^ 2021-07-12T12:40:00,338 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromStart’: 2021-07-12T12:40:00,345 gat/SegmentList.c:14800:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,345 14800 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-12T12:40:00,345 | ^ 2021-07-12T12:40:00,355 gat/SegmentList.c:14915:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,356 14915 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,356 | ^~ 2021-07-12T12:40:00,367 gat/SegmentList.c:15016:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,367 15016 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,367 | ^~ 2021-07-12T12:40:00,379 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_getFilledSegmentsFromEnd’: 2021-07-12T12:40:00,387 gat/SegmentList.c:15311:35: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_PositionDifference’ {aka ‘int’} and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,387 15311 | __pyx_t_9 = ((__pyx_v_remainder > ((struct __pyx_vtabstruct_3gat_11SegmentList_SegmentList *)__pyx_v_self->__pyx_base.__pyx_vtab)->sum(__pyx_v_self, 0)) != 0); 2021-07-12T12:40:00,387 | ^ 2021-07-12T12:40:00,398 gat/SegmentList.c:15426:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,398 15426 | __pyx_t_9 = ((__pyx_v_idx == __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,398 | ^~ 2021-07-12T12:40:00,414 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_filter’: 2021-07-12T12:40:00,422 gat/SegmentList.c:15966:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,422 15966 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,422 | ^ 2021-07-12T12:40:00,430 gat/SegmentList.c:15972:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,430 15972 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T12:40:00,430 | ^ 2021-07-12T12:40:00,442 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_intersect’: 2021-07-12T12:40:00,450 gat/SegmentList.c:16635:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,451 16635 | __pyx_t_7 = ((__pyx_v_this_idx < __pyx_v_self->nsegments) != 0); 2021-07-12T12:40:00,451 | ^ 2021-07-12T12:40:00,459 gat/SegmentList.c:16641:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,459 16641 | __pyx_t_7 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T12:40:00,459 | ^ 2021-07-12T12:40:00,471 gat/SegmentList.c:16821:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,472 16821 | __pyx_t_5 = ((__pyx_v_working_idx >= __pyx_v_allocated) != 0); 2021-07-12T12:40:00,472 | ^~ 2021-07-12T12:40:00,479 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_extend_segments’: 2021-07-12T12:40:00,487 gat/SegmentList.c:17135:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,487 17135 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T12:40:00,488 | ^ 2021-07-12T12:40:00,495 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_expand_segments’: 2021-07-12T12:40:00,504 gat/SegmentList.c:17369:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,504 17369 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_7; __pyx_v_idx++) { 2021-07-12T12:40:00,504 | ^ 2021-07-12T12:40:00,506 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_54shift’: 2021-07-12T12:40:00,515 gat/SegmentList.c:17560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,515 17560 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_1; __pyx_v_idx++) { 2021-07-12T12:40:00,515 | ^ 2021-07-12T12:40:00,521 gat/SegmentList.c: In function ‘__pyx_f_3gat_11SegmentList_11SegmentList_sum’: 2021-07-12T12:40:00,530 gat/SegmentList.c:17732:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,530 17732 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T12:40:00,530 | ^ 2021-07-12T12:40:00,531 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_58largest’: 2021-07-12T12:40:00,540 gat/SegmentList.c:17929:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,541 17929 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_3; __pyx_v_idx++) { 2021-07-12T12:40:00,541 | ^ 2021-07-12T12:40:00,571 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_74asList’: 2021-07-12T12:40:00,580 gat/SegmentList.c:19075:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,581 19075 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T12:40:00,581 | ^ 2021-07-12T12:40:00,582 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_76asLengths’: 2021-07-12T12:40:00,592 gat/SegmentList.c:19189:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,592 19189 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T12:40:00,592 | ^ 2021-07-12T12:40:00,602 gat/SegmentList.c: In function ‘__pyx_pf_3gat_11SegmentList_11SegmentList_82compare’: 2021-07-12T12:40:00,612 gat/SegmentList.c:19578:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:00,612 19578 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_8; __pyx_v_idx++) { 2021-07-12T12:40:00,612 | ^ 2021-07-12T12:40:01,622 At top level: 2021-07-12T12:40:01,623 gat/SegmentList.c:3559:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpDouble’ defined but not used [-Wunused-function] 2021-07-12T12:40:01,624 3559 | static int __pyx_f_3gat_11SegmentList_cmpDouble(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T12:40:01,624 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:40:01,625 gat/SegmentList.c:3525:12: warning: ‘__pyx_f_3gat_11SegmentList_cmpPosition’ defined but not used [-Wunused-function] 2021-07-12T12:40:01,625 3525 | static int __pyx_f_3gat_11SegmentList_cmpPosition(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T12:40:01,626 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:40:17,122 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T12:40:17,263 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T12:40:17,263 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T12:40:17,263 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T12:40:17,264 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T12:40:17,264 | | 2021-07-12T12:40:17,264 | size_t * {aka unsigned int *} 2021-07-12T12:40:17,264 In file included from /usr/include/zlib.h:34, 2021-07-12T12:40:17,265 from utils/gat_utils.c:2: 2021-07-12T12:40:17,265 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T12:40:17,265 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T12:40:17,266 | ^~ 2021-07-12T12:40:17,384 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/SegmentList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:40:17,571 building 'gat.PositionList' extension 2021-07-12T12:40:17,572 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/PositionList.c -o build/temp.linux-armv7l-3.9/gat/PositionList.o 2021-07-12T12:40:18,033 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_normalize’: 2021-07-12T12:40:18,036 gat/PositionList.c:5779:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:18,036 5779 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_6; __pyx_v_idx++) { 2021-07-12T12:40:18,036 | ^ 2021-07-12T12:40:18,038 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList__resize’: 2021-07-12T12:40:18,041 gat/PositionList.c:5986:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:18,041 5986 | if (unlikely(!((__pyx_v_npositions >= __pyx_v_self->npositions) != 0))) { 2021-07-12T12:40:18,041 | ^~ 2021-07-12T12:40:18,041 gat/PositionList.c:808:43: note: in definition of macro ‘unlikely’ 2021-07-12T12:40:18,041 808 | #define unlikely(x) __builtin_expect(!!(x), 0) 2021-07-12T12:40:18,041 | ^ 2021-07-12T12:40:18,043 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_overlap’: 2021-07-12T12:40:18,047 gat/PositionList.c:6351:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:18,047 6351 | __pyx_t_1 = ((__pyx_v_idx == __pyx_v_self->npositions) != 0); 2021-07-12T12:40:18,047 | ^~ 2021-07-12T12:40:18,052 gat/PositionList.c:6478:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:18,052 6478 | __pyx_t_2 = ((__pyx_v_idx < __pyx_v_self->npositions) != 0); 2021-07-12T12:40:18,052 | ^ 2021-07-12T12:40:18,067 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersectionWithSegments’: 2021-07-12T12:40:18,071 gat/PositionList.c:7014:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:18,071 7014 | __pyx_t_10 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-12T12:40:18,071 | ^ 2021-07-12T12:40:18,074 gat/PositionList.c:7020:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:18,074 7020 | __pyx_t_10 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T12:40:18,074 | ^ 2021-07-12T12:40:18,084 gat/PositionList.c: In function ‘__pyx_f_3gat_12PositionList_12PositionList_intersect’: 2021-07-12T12:40:18,088 gat/PositionList.c:7554:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:18,088 7554 | __pyx_t_8 = ((__pyx_v_this_idx < __pyx_v_self->npositions) != 0); 2021-07-12T12:40:18,088 | ^ 2021-07-12T12:40:18,092 gat/PositionList.c:7560:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:18,092 7560 | __pyx_t_8 = ((__pyx_v_other_idx < __pyx_v_other->nsegments) != 0); 2021-07-12T12:40:18,092 | ^ 2021-07-12T12:40:18,097 gat/PositionList.c: In function ‘__pyx_pf_3gat_12PositionList_12PositionList_30asList’: 2021-07-12T12:40:18,100 gat/PositionList.c:7945:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:18,101 7945 | for (__pyx_v_idx = 0; __pyx_v_idx < __pyx_t_2; __pyx_v_idx++) { 2021-07-12T12:40:18,101 | ^ 2021-07-12T12:40:18,436 At top level: 2021-07-12T12:40:18,437 gat/PositionList.c:1800:18: warning: ‘__pyx_f_3gat_12PositionList_force_bytes’ defined but not used [-Wunused-function] 2021-07-12T12:40:18,437 1800 | static PyObject *__pyx_f_3gat_12PositionList_force_bytes(PyObject *__pyx_v_s, struct __pyx_opt_args_3gat_12PositionList_force_bytes *__pyx_optional_args) { 2021-07-12T12:40:18,437 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:40:25,821 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T12:40:25,960 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T12:40:25,960 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T12:40:25,961 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T12:40:25,961 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T12:40:25,961 | | 2021-07-12T12:40:25,961 | size_t * {aka unsigned int *} 2021-07-12T12:40:25,961 In file included from /usr/include/zlib.h:34, 2021-07-12T12:40:25,962 from utils/gat_utils.c:2: 2021-07-12T12:40:25,962 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T12:40:25,963 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T12:40:25,963 | ^~ 2021-07-12T12:40:26,080 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/PositionList.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:40:26,234 building 'gat.Engine' extension 2021-07-12T12:40:26,234 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c gat/Engine.c -o build/temp.linux-armv7l-3.9/gat/Engine.o 2021-07-12T12:40:26,636 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T12:40:26,637 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T12:40:26,637 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T12:40:26,637 from gat/Engine.c:621: 2021-07-12T12:40:26,637 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T12:40:26,637 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T12:40:26,637 | ^~~~~~~ 2021-07-12T12:40:26,768 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_33SegmentListSamplerWithEdgeEffects___init__’: 2021-07-12T12:40:26,771 gat/Engine.c:6588:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T12:40:26,771 6588 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-12T12:40:26,771 | ^ 2021-07-12T12:40:26,789 gat/Engine.c: In function ‘__pyx_pf_3gat_6Engine_18SegmentListSampler___init__’: 2021-07-12T12:40:26,793 gat/Engine.c:7553:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T12:40:26,793 7553 | for (__pyx_v_i = 0; __pyx_v_i < __pyx_t_1; __pyx_v_i++) { 2021-07-12T12:40:26,793 | ^ 2021-07-12T12:40:26,799 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_18SegmentListSampler_sample’: 2021-07-12T12:40:26,803 gat/Engine.c:7769:42: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2021-07-12T12:40:26,803 7769 | __pyx_t_8 = (__pyx_v_segment_index < __pyx_v_self->nsegments); 2021-07-12T12:40:26,803 | ^ 2021-07-12T12:40:27,013 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_12SamplerShift_sample’: 2021-07-12T12:40:27,021 gat/Engine.c:15870:33: warning: comparison of integer expressions of different signedness: ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2021-07-12T12:40:27,021 15870 | for (__pyx_v_x = 0; __pyx_v_x < __pyx_t_9; __pyx_v_x++) { 2021-07-12T12:40:27,022 | ^ 2021-07-12T12:40:27,334 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_compressSampleIndex’: 2021-07-12T12:40:27,346 gat/Engine.c:24291:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:27,346 24291 | __pyx_t_3 = ((__pyx_v_observed_idx < __pyx_v_l) != 0); 2021-07-12T12:40:27,346 | ^ 2021-07-12T12:40:27,369 gat/Engine.c:24450:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:27,370 24450 | __pyx_t_2 = ((__pyx_v_x < __pyx_v_l) != 0); 2021-07-12T12:40:27,370 | ^ 2021-07-12T12:40:29,599 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_isSampleSignificantAtPvalue’: 2021-07-12T12:40:29,628 gat/Engine.c:57925:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_3gat_11SegmentList_Position’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:40:29,629 57925 | __pyx_t_3 = ((__pyx_v_idx < __pyx_v_l) != 0); 2021-07-12T12:40:29,629 | ^ 2021-07-12T12:40:34,451 At top level: 2021-07-12T12:40:34,466 gat/Engine.c:24251:13: warning: ‘__pyx_f_3gat_6Engine_compressSampleIndex’ defined but not used [-Wunused-function] 2021-07-12T12:40:34,466 24251 | static void __pyx_f_3gat_6Engine_compressSampleIndex(__pyx_t_3gat_6Engine_EnrichmentStatistics *__pyx_v_stats) { 2021-07-12T12:40:34,466 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:40:34,469 gat/Engine.c:5228:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd’ defined but not used [-Wunused-function] 2021-07-12T12:40:34,469 5228 | static int __pyx_f_3gat_6Engine_cmpSegmentsStartAndEnd(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T12:40:34,469 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:40:34,472 gat/Engine.c:5191:12: warning: ‘__pyx_f_3gat_6Engine_cmpSegments’ defined but not used [-Wunused-function] 2021-07-12T12:40:34,472 5191 | static int __pyx_f_3gat_6Engine_cmpSegments(const void* __pyx_v_s1, const void* __pyx_v_s2) { 2021-07-12T12:40:34,472 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:41:12,767 gat/Engine.c: In function ‘__pyx_f_3gat_6Engine_24SamplerGlobalPermutation_sample’: 2021-07-12T12:41:12,768 gat/Engine.c:526:40: warning: ‘__pyx_v_start’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2021-07-12T12:41:12,768 526 | #define PyInt_FromLong PyLong_FromLong 2021-07-12T12:41:12,768 | ^~~~~~~~~~~~~~~ 2021-07-12T12:41:12,778 gat/Engine.c:17948:49: note: ‘__pyx_v_start’ was declared here 2021-07-12T12:41:12,778 17948 | __pyx_t_3gat_11SegmentList_PositionDifference __pyx_v_start; 2021-07-12T12:41:12,779 | ^~~~~~~~~~~~~ 2021-07-12T12:41:47,434 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I./utils -I../GatSegmentList -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c utils/gat_utils.c -o build/temp.linux-armv7l-3.9/utils/gat_utils.o 2021-07-12T12:41:47,590 utils/gat_utils.c: In function ‘fromCompressedFile’: 2021-07-12T12:41:47,590 utils/gat_utils.c:110:33: warning: passing argument 2 of ‘uncompress’ from incompatible pointer type [-Wincompatible-pointer-types] 2021-07-12T12:41:47,590 110 | int zok = uncompress (buffer, &uncompressed_size, compressed, compressed_size); 2021-07-12T12:41:47,590 | ^~~~~~~~~~~~~~~~~~ 2021-07-12T12:41:47,590 | | 2021-07-12T12:41:47,591 | size_t * {aka unsigned int *} 2021-07-12T12:41:47,591 In file included from /usr/include/zlib.h:34, 2021-07-12T12:41:47,592 from utils/gat_utils.c:2: 2021-07-12T12:41:47,592 /usr/include/zlib.h:1265:32: note: expected ‘uLongf *’ {aka ‘long unsigned int *’} but argument is of type ‘size_t *’ {aka ‘unsigned int *’} 2021-07-12T12:41:47,592 1265 | ZEXTERN int ZEXPORT uncompress OF((Bytef *dest, uLongf *destLen, 2021-07-12T12:41:47,593 | ^~ 2021-07-12T12:41:47,708 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/gat/Engine.o build/temp.linux-armv7l-3.9/utils/gat_utils.o -lz -lrt -o build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:41:48,130 running build_scripts 2021-07-12T12:41:48,132 creating build/scripts-3.9 2021-07-12T12:41:48,133 copying and adjusting scripts/gat-run.py -> build/scripts-3.9 2021-07-12T12:41:48,136 copying and adjusting scripts/gat-great.py -> build/scripts-3.9 2021-07-12T12:41:48,139 copying and adjusting scripts/gat-compare.py -> build/scripts-3.9 2021-07-12T12:41:48,142 copying and adjusting scripts/gat-plot.py -> build/scripts-3.9 2021-07-12T12:41:48,144 changing mode of build/scripts-3.9/gat-run.py from 644 to 755 2021-07-12T12:41:48,145 changing mode of build/scripts-3.9/gat-great.py from 644 to 755 2021-07-12T12:41:48,146 changing mode of build/scripts-3.9/gat-compare.py from 644 to 755 2021-07-12T12:41:48,147 changing mode of build/scripts-3.9/gat-plot.py from 644 to 755 2021-07-12T12:41:48,160 installing to build/bdist.linux-armv7l/wheel 2021-07-12T12:41:48,161 running install 2021-07-12T12:41:48,163 running install_lib 2021-07-12T12:41:48,168 creating build/bdist.linux-armv7l 2021-07-12T12:41:48,169 creating build/bdist.linux-armv7l/wheel 2021-07-12T12:41:48,171 creating build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,173 copying build/lib.linux-armv7l-3.9/gat/PositionList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,188 copying build/lib.linux-armv7l-3.9/gat/IO.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,192 copying build/lib.linux-armv7l-3.9/gat/Engine.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,294 copying build/lib.linux-armv7l-3.9/gat/IOTools.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,297 copying build/lib.linux-armv7l-3.9/gat/Stats.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,299 copying build/lib.linux-armv7l-3.9/gat/SegmentList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,326 copying build/lib.linux-armv7l-3.9/gat/__init__.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,329 copying build/lib.linux-armv7l-3.9/gat/Bed.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,332 copying build/lib.linux-armv7l-3.9/gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,339 copying build/lib.linux-armv7l-3.9/gat/Experiment.py -> build/bdist.linux-armv7l/wheel/gat 2021-07-12T12:41:48,341 running install_egg_info 2021-07-12T12:41:48,367 running egg_info 2021-07-12T12:41:48,368 writing gat.egg-info/PKG-INFO 2021-07-12T12:41:48,370 writing dependency_links to gat.egg-info/dependency_links.txt 2021-07-12T12:41:48,372 writing requirements to gat.egg-info/requires.txt 2021-07-12T12:41:48,373 writing top-level names to gat.egg-info/top_level.txt 2021-07-12T12:41:48,420 reading manifest file 'gat.egg-info/SOURCES.txt' 2021-07-12T12:41:48,425 reading manifest template 'MANIFEST.in' 2021-07-12T12:41:48,426 warning: no files found matching 'COPYING' 2021-07-12T12:41:48,427 warning: no files found matching 'INSTALL' 2021-07-12T12:41:48,427 warning: no files found matching 'KNOWN_BUGS' 2021-07-12T12:41:48,427 warning: no files found matching 'THANKS' 2021-07-12T12:41:48,436 writing manifest file 'gat.egg-info/SOURCES.txt' 2021-07-12T12:41:48,438 Copying gat.egg-info to build/bdist.linux-armv7l/wheel/gat-1.3.5-py3.9.egg-info 2021-07-12T12:41:48,452 running install_scripts 2021-07-12T12:41:48,476 creating build/bdist.linux-armv7l/wheel/gat-1.3.5.data 2021-07-12T12:41:48,477 creating build/bdist.linux-armv7l/wheel/gat-1.3.5.data/scripts 2021-07-12T12:41:48,478 copying build/scripts-3.9/gat-compare.py -> build/bdist.linux-armv7l/wheel/gat-1.3.5.data/scripts 2021-07-12T12:41:48,481 copying build/scripts-3.9/gat-plot.py -> build/bdist.linux-armv7l/wheel/gat-1.3.5.data/scripts 2021-07-12T12:41:48,483 copying build/scripts-3.9/gat-great.py -> build/bdist.linux-armv7l/wheel/gat-1.3.5.data/scripts 2021-07-12T12:41:48,486 copying build/scripts-3.9/gat-run.py -> build/bdist.linux-armv7l/wheel/gat-1.3.5.data/scripts 2021-07-12T12:41:48,488 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.5.data/scripts/gat-compare.py to 755 2021-07-12T12:41:48,488 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.5.data/scripts/gat-plot.py to 755 2021-07-12T12:41:48,488 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.5.data/scripts/gat-great.py to 755 2021-07-12T12:41:48,488 changing mode of build/bdist.linux-armv7l/wheel/gat-1.3.5.data/scripts/gat-run.py to 755 2021-07-12T12:41:48,511 creating build/bdist.linux-armv7l/wheel/gat-1.3.5.dist-info/WHEEL 2021-07-12T12:41:48,513 creating '/tmp/pip-wheel-tum0ozr8/gat-1.3.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T12:41:48,517 adding 'gat/Bed.py' 2021-07-12T12:41:48,565 adding 'gat/CoordinateList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:41:49,451 adding 'gat/Engine.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:41:49,493 adding 'gat/Experiment.py' 2021-07-12T12:41:49,496 adding 'gat/IO.py' 2021-07-12T12:41:49,498 adding 'gat/IOTools.py' 2021-07-12T12:41:49,618 adding 'gat/PositionList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:41:49,858 adding 'gat/SegmentList.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:41:49,869 adding 'gat/Stats.py' 2021-07-12T12:41:49,874 adding 'gat/__init__.py' 2021-07-12T12:41:49,877 adding 'gat-1.3.5.data/scripts/gat-compare.py' 2021-07-12T12:41:49,880 adding 'gat-1.3.5.data/scripts/gat-great.py' 2021-07-12T12:41:49,881 adding 'gat-1.3.5.data/scripts/gat-plot.py' 2021-07-12T12:41:49,883 adding 'gat-1.3.5.data/scripts/gat-run.py' 2021-07-12T12:41:49,886 adding 'gat-1.3.5.dist-info/METADATA' 2021-07-12T12:41:49,886 adding 'gat-1.3.5.dist-info/WHEEL' 2021-07-12T12:41:49,887 adding 'gat-1.3.5.dist-info/pbr.json' 2021-07-12T12:41:49,888 adding 'gat-1.3.5.dist-info/top_level.txt' 2021-07-12T12:41:49,889 adding 'gat-1.3.5.dist-info/RECORD' 2021-07-12T12:41:49,931 removing build/bdist.linux-armv7l/wheel 2021-07-12T12:41:50,430 Building wheel for gat (setup.py): finished with status 'done' 2021-07-12T12:41:50,465 Created wheel for gat: filename=gat-1.3.5-cp39-cp39-linux_armv7l.whl size=2456959 sha256=1abc7f10be32ab0731281d51d2face368e371205af05bcf6ba6e935abf787c41 2021-07-12T12:41:50,466 Stored in directory: /tmp/pip-ephem-wheel-cache-nkcqwsf8/wheels/57/5a/a8/05f3148f736405f01b4dc61a6e729db8a1fb3f5466eeb7738b 2021-07-12T12:41:50,476 Successfully built gat 2021-07-12T12:41:50,565 Removed build tracker: '/tmp/pip-req-tracker-70m10hot'