2021-07-12T12:41:24,469 Created temporary directory: /tmp/pip-ephem-wheel-cache-a4_90pa0 2021-07-12T12:41:24,472 Created temporary directory: /tmp/pip-req-tracker-4_3tf5_g 2021-07-12T12:41:24,472 Initialized build tracking at /tmp/pip-req-tracker-4_3tf5_g 2021-07-12T12:41:24,472 Created build tracker: /tmp/pip-req-tracker-4_3tf5_g 2021-07-12T12:41:24,473 Entered build tracker: /tmp/pip-req-tracker-4_3tf5_g 2021-07-12T12:41:24,473 Created temporary directory: /tmp/pip-wheel-yjoyy1a7 2021-07-12T12:41:24,506 1 location(s) to search for versions of molmod: 2021-07-12T12:41:24,506 * https://pypi.org/simple/molmod/ 2021-07-12T12:41:24,506 Fetching project page and analyzing links: https://pypi.org/simple/molmod/ 2021-07-12T12:41:24,507 Getting page https://pypi.org/simple/molmod/ 2021-07-12T12:41:24,508 Found index url https://pypi.org/simple 2021-07-12T12:41:24,606 Found link https://files.pythonhosted.org/packages/d8/b1/d7cf3645e70ddf22e3c93225a0f963debc4be6276148cbaed46e973d2064/molmod-1.2.1.tar.gz#sha256=9fc0372f99b2e00fe6fc4ae9954d31b19a767c40c97423c6ee4ada76f3dd9843 (from https://pypi.org/simple/molmod/), version: 1.2.1 2021-07-12T12:41:24,607 Found link https://files.pythonhosted.org/packages/03/2d/4457e38b0e8245af76b37000ccee228d12b029023b0711954bc495494fd0/molmod-1.3.0.tar.gz#sha256=1ed88d05ced28f998b1644f1d400853d30faba8eb06ebb818b22704f2f3cad80 (from https://pypi.org/simple/molmod/), version: 1.3.0 2021-07-12T12:41:24,607 Found link https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb (from https://pypi.org/simple/molmod/), version: 1.3.1 2021-07-12T12:41:24,607 Found link https://files.pythonhosted.org/packages/79/fd/9f4282bf37b3ee38242dc4c6883b0923d450331f491ab5942702b791e84a/molmod-1.3.2.tar.gz#sha256=0af0b797cf628458e1f5c0334cf7f7f1c2ee6a3edbba87ca0fbde39e9b444ec7 (from https://pypi.org/simple/molmod/), version: 1.3.2 2021-07-12T12:41:24,608 Found link https://files.pythonhosted.org/packages/8c/b1/a243fe8d060c2ccb643e70504b0a727fe4a3420b2c790e3718865b6ffc8c/molmod-1.3.3.tar.gz#sha256=3bcdfb73faf4c3f180e68f7c8efe7fdd58e0e8ce8e8f3883bc4dfb5a260f63db (from https://pypi.org/simple/molmod/), version: 1.3.3 2021-07-12T12:41:24,608 Found link https://files.pythonhosted.org/packages/0d/d2/5df39f43e2f91f5a13376ef2c34aa30de3fd9be11fb6e9e5c18a9e15c9f8/molmod-1.3.4.tar.gz#sha256=c39fc75fa76a6c1c14b0fb41e7e76802b3dad5d695ae62b2afa0ebcc36b37cb4 (from https://pypi.org/simple/molmod/), version: 1.3.4 2021-07-12T12:41:24,608 Found link https://files.pythonhosted.org/packages/5f/dc/39d3239d5d8d54bfc49378235b7c20f010ba98f3c4552b841617884d3646/molmod-1.3.5.tar.gz#sha256=5360f2afab0c09eb6a1124b4deec63966f8aaa5c90176890a9980e242fa4c53c (from https://pypi.org/simple/molmod/), version: 1.3.5 2021-07-12T12:41:24,608 Found link https://files.pythonhosted.org/packages/da/f3/41c1c6830eae57a2b96b0d0d9d1853de31119ab7db44136ef69d3690f21a/molmod-1.4.0.tar.gz#sha256=4dbb214faa90e7e08c9dc54d9b5595c2aa6e2a946c1dcf7defb13e1f9b6fe914 (from https://pypi.org/simple/molmod/), version: 1.4.0 2021-07-12T12:41:24,609 Found link https://files.pythonhosted.org/packages/03/bc/ca927944923a5de71f19c2390ab0b5f99f5e4723a1661c5917ab2cfe9919/molmod-1.4.1.tar.gz#sha256=51992a9e46259293f1851d50a77ddef6ed4d4522826b5452eebd2166f0ffd1d7 (from https://pypi.org/simple/molmod/), version: 1.4.1 2021-07-12T12:41:24,609 Found link https://files.pythonhosted.org/packages/8a/b8/0edf642e6a0bcb411523f5a25f87f1db08b590a073cb3e21dc332407a663/molmod-1.4.2.tar.gz#sha256=c5a533ccdd13e7ffa7ad7c1dec6d49e6279b27b79584a7bd27056b16711e74cd (from https://pypi.org/simple/molmod/), version: 1.4.2 2021-07-12T12:41:24,609 Found link https://files.pythonhosted.org/packages/0b/85/bb75ec4376a612f3e5300712c5e1abab63894ec1bbf7be249a42a90b2c66/molmod-1.4.3.tar.gz#sha256=a93e694e07e36fe5881dc19b8d004c5c4e0514bc5b1240de04497c6aaa99ecf6 (from https://pypi.org/simple/molmod/), version: 1.4.3 2021-07-12T12:41:24,609 Found link https://files.pythonhosted.org/packages/89/80/6a23f730196ed3ffb478dc3f9ea047913c99091d301cc82f4820ecee095d/molmod-1.4.4.tar.gz#sha256=ca0e461fe42fc8b7e0b481cda33aac247d86b5fb817b5076e20abc90dd577797 (from https://pypi.org/simple/molmod/), version: 1.4.4 2021-07-12T12:41:24,610 Found link https://files.pythonhosted.org/packages/98/08/f84c490fe1a2d0e3ff55dddd1079eeb77b2742ed3c8ad49b392444031d2f/molmod-1.4.5.tar.gz#sha256=e94520945c066c26494f20bbf7f85711458acc56b22da7b0da9e48b5b1a2ec35 (from https://pypi.org/simple/molmod/), version: 1.4.5 2021-07-12T12:41:24,610 Found link https://files.pythonhosted.org/packages/e0/ce/a5df4a468f492baf8cce68318fd74eac947ff7f0947afc5bb14ac85fdccb/molmod-1.4.6.tar.gz#sha256=3147eec3a57da164415359188a02385b9285486e70e98f9fc8e2d03037a8ffe3 (from https://pypi.org/simple/molmod/), version: 1.4.6 2021-07-12T12:41:24,610 Found link https://files.pythonhosted.org/packages/31/e6/4d8fe5e1fdf2077fdcee631d56aaaf8efaa331d823c4edc870fb30d701d8/molmod-1.4.7.tar.gz#sha256=bd52ddbfafd8ce88351ba8473580dee760cd1df25f90b75396fc75815db18e66 (from https://pypi.org/simple/molmod/), version: 1.4.7 2021-07-12T12:41:24,611 Found link https://files.pythonhosted.org/packages/23/77/814f9302b6df72ef3aa6944edd8b9b0f5e983aed07027828a4e0666c4ef3/molmod-1.4.8.tar.gz#sha256=08cc526080aee04659ff5d08f8d26ab6973afef62becb9ae21cb11bb5b632177 (from https://pypi.org/simple/molmod/), version: 1.4.8 2021-07-12T12:41:24,611 Skipping link: not a file: https://pypi.org/simple/molmod/ 2021-07-12T12:41:24,631 Given no hashes to check 1 links for project 'molmod': discarding no candidates 2021-07-12T12:41:24,650 Collecting molmod==1.3.1 2021-07-12T12:41:24,651 Created temporary directory: /tmp/pip-unpack-lp19x_59 2021-07-12T12:41:25,323 Downloading molmod-1.3.1.tar.gz (1.7 MB) 2021-07-12T12:41:26,209 Added molmod==1.3.1 from https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb to build tracker '/tmp/pip-req-tracker-4_3tf5_g' 2021-07-12T12:41:26,210 Running setup.py (path:/tmp/pip-wheel-yjoyy1a7/molmod_5aa951f12f354657ac23a06a7f40f150/setup.py) egg_info for package molmod 2021-07-12T12:41:26,211 Created temporary directory: /tmp/pip-pip-egg-info-jrd3aax4 2021-07-12T12:41:26,211 Running command python setup.py egg_info 2021-07-12T12:41:27,600 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:41:27,785 running egg_info 2021-07-12T12:41:27,787 creating /tmp/pip-pip-egg-info-jrd3aax4/molmod.egg-info 2021-07-12T12:41:27,788 writing /tmp/pip-pip-egg-info-jrd3aax4/molmod.egg-info/PKG-INFO 2021-07-12T12:41:27,790 writing dependency_links to /tmp/pip-pip-egg-info-jrd3aax4/molmod.egg-info/dependency_links.txt 2021-07-12T12:41:27,792 writing requirements to /tmp/pip-pip-egg-info-jrd3aax4/molmod.egg-info/requires.txt 2021-07-12T12:41:27,793 writing top-level names to /tmp/pip-pip-egg-info-jrd3aax4/molmod.egg-info/top_level.txt 2021-07-12T12:41:27,794 writing manifest file '/tmp/pip-pip-egg-info-jrd3aax4/molmod.egg-info/SOURCES.txt' 2021-07-12T12:41:27,953 reading manifest file '/tmp/pip-pip-egg-info-jrd3aax4/molmod.egg-info/SOURCES.txt' 2021-07-12T12:41:27,955 reading manifest template 'MANIFEST.in' 2021-07-12T12:41:28,310 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T12:41:28,371 adding license file 'LICENSE.txt' 2021-07-12T12:41:28,382 writing manifest file '/tmp/pip-pip-egg-info-jrd3aax4/molmod.egg-info/SOURCES.txt' 2021-07-12T12:41:28,501 Source in /tmp/pip-wheel-yjoyy1a7/molmod_5aa951f12f354657ac23a06a7f40f150 has version 1.3.1, which satisfies requirement molmod==1.3.1 from https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb 2021-07-12T12:41:28,502 Removed molmod==1.3.1 from https://files.pythonhosted.org/packages/2c/3d/dd9c32cebc2ee7f29a16a778d775ce074c7c1c7b083f83b0dd63e350927e/molmod-1.3.1.tar.gz#sha256=eee1b0035ef238a9086f71c07bc27563f1481c99ecb172118f41c1f024d6c9fb from build tracker '/tmp/pip-req-tracker-4_3tf5_g' 2021-07-12T12:41:28,506 Created temporary directory: /tmp/pip-unpack-udjiv9bp 2021-07-12T12:41:28,506 Building wheels for collected packages: molmod 2021-07-12T12:41:28,510 Created temporary directory: /tmp/pip-wheel-y7jk9ma4 2021-07-12T12:41:28,511 Building wheel for molmod (setup.py): started 2021-07-12T12:41:28,511 Destination directory: /tmp/pip-wheel-y7jk9ma4 2021-07-12T12:41:28,511 Running command /usr/bin/python3 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-yjoyy1a7/molmod_5aa951f12f354657ac23a06a7f40f150/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-yjoyy1a7/molmod_5aa951f12f354657ac23a06a7f40f150/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-y7jk9ma4 2021-07-12T12:41:29,851 fatal: not a git repository (or any of the parent directories): .git 2021-07-12T12:41:30,043 running bdist_wheel 2021-07-12T12:41:30,048 running build 2021-07-12T12:41:30,049 running build_py 2021-07-12T12:41:30,184 creating build 2021-07-12T12:41:30,185 creating build/lib.linux-armv7l-3.9 2021-07-12T12:41:30,185 creating build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,186 copying molmod/molecules.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,189 copying molmod/similarity.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,191 copying molmod/minimizer.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,195 copying molmod/vectors.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,197 copying molmod/periodic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,199 copying molmod/units.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,201 copying molmod/zmatrix.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,203 copying molmod/transformations.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,206 copying molmod/toyff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,208 copying molmod/__init__.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,210 copying molmod/utils.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,213 copying molmod/isotopes.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,216 copying molmod/quaternions.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,218 copying molmod/clusters.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,220 copying molmod/binning.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,223 copying molmod/pairff.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,226 copying molmod/graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,230 copying molmod/log.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,234 copying molmod/ic.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,237 copying molmod/molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,240 copying molmod/randomize.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,242 copying molmod/unit_cells.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,245 copying molmod/symmetry.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,247 copying molmod/constants.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,249 copying molmod/bonds.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,251 copying molmod/version.py -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,255 creating build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,256 copying molmod/test/test_similarity.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,258 copying molmod/test/test_unit_cells.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,261 copying molmod/test/test_molecules.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,263 copying molmod/test/test_zmatrix.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,266 copying molmod/test/test_log.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,267 copying molmod/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,269 copying molmod/test/test_ic.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,272 copying molmod/test/test_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,275 copying molmod/test/test_clusters.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,276 copying molmod/test/test_utils.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,279 copying molmod/test/test_examples.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,281 copying molmod/test/test_symmetry.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,283 copying molmod/test/test_quaternions.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,285 copying molmod/test/test_randomize.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,287 copying molmod/test/common.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,289 copying molmod/test/test_units.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,291 copying molmod/test/test_transformations.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,294 copying molmod/test/test_minimizer.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,296 copying molmod/test/test_toyff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,299 copying molmod/test/test_molecular_graphs.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,301 copying molmod/test/test_vectors.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,303 copying molmod/test/test_data.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,306 copying molmod/test/test_binning.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,308 copying molmod/test/test_pairff.py -> build/lib.linux-armv7l-3.9/molmod/test 2021-07-12T12:41:30,312 creating build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,313 copying molmod/io/cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,315 copying molmod/io/number_state.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,318 copying molmod/io/cube.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,320 copying molmod/io/cml.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,322 copying molmod/io/atrj.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,325 copying molmod/io/xyz.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,328 copying molmod/io/cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,331 copying molmod/io/psf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,334 copying molmod/io/gamess.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,337 copying molmod/io/pdb.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,339 copying molmod/io/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,342 copying molmod/io/fchk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,345 copying molmod/io/common.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,347 copying molmod/io/crystal.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,350 copying molmod/io/dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,353 copying molmod/io/sdf.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,356 copying molmod/io/gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,358 copying molmod/io/lammps.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,361 copying molmod/io/chk.py -> build/lib.linux-armv7l-3.9/molmod/io 2021-07-12T12:41:30,365 creating build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,366 copying molmod/io/test/test_gamess.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,368 copying molmod/io/test/test_cml.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,370 copying molmod/io/test/test_psf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,372 copying molmod/io/test/test_sdf.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,374 copying molmod/io/test/test_gromacs.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,376 copying molmod/io/test/test_lammps.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,378 copying molmod/io/test/test_pdb.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,380 copying molmod/io/test/test_xyz.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,382 copying molmod/io/test/__init__.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,384 copying molmod/io/test/test_dlpoly.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,386 copying molmod/io/test/test_fchk.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,388 copying molmod/io/test/test_cp2k.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,390 copying molmod/io/test/test_cpmd.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,392 copying molmod/io/test/test_cube.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,394 copying molmod/io/test/test_atrj.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,396 copying molmod/io/test/test_number_state.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,398 copying molmod/io/test/test_crystal.py -> build/lib.linux-armv7l-3.9/molmod/io/test 2021-07-12T12:41:30,400 running egg_info 2021-07-12T12:41:30,415 writing molmod.egg-info/PKG-INFO 2021-07-12T12:41:30,417 writing dependency_links to molmod.egg-info/dependency_links.txt 2021-07-12T12:41:30,419 writing requirements to molmod.egg-info/requires.txt 2021-07-12T12:41:30,420 writing top-level names to molmod.egg-info/top_level.txt 2021-07-12T12:41:30,433 reading manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T12:41:30,441 reading manifest template 'MANIFEST.in' 2021-07-12T12:41:30,799 warning: no previously-included files matching 'ext.c' found under directory 'molmod' 2021-07-12T12:41:30,858 adding license file 'LICENSE.txt' 2021-07-12T12:41:30,874 writing manifest file 'molmod.egg-info/SOURCES.txt' 2021-07-12T12:41:30,890 copying molmod/common.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,892 copying molmod/common.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,894 copying molmod/ext.pyx -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,896 copying molmod/ff.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,899 copying molmod/ff.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,901 copying molmod/ff.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,903 copying molmod/graphs.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,904 copying molmod/graphs.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,907 copying molmod/graphs.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,909 copying molmod/molecules.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,911 copying molmod/molecules.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,913 copying molmod/molecules.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,915 copying molmod/similarity.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,918 copying molmod/similarity.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,920 copying molmod/similarity.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,923 copying molmod/unit_cells.c -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,926 copying molmod/unit_cells.h -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,929 copying molmod/unit_cells.pxd -> build/lib.linux-armv7l-3.9/molmod 2021-07-12T12:41:30,932 creating build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:41:30,933 copying molmod/data/bonds.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:41:30,936 copying molmod/data/bonds.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:41:30,939 copying molmod/data/mass.mas03 -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:41:30,958 copying molmod/data/nubtab03.asc -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:41:30,971 copying molmod/data/periodic.csv -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:41:30,974 copying molmod/data/periodic.ods -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:41:30,977 copying molmod/data/toyff_angles.txt -> build/lib.linux-armv7l-3.9/molmod/data 2021-07-12T12:41:30,980 creating build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:30,981 copying molmod/data/test/1LJL_Cys10.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:30,985 copying molmod/data/test/1TOH.b3lyp.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:30,999 copying molmod/data/test/1TOH.b3lyp.trim.fchk -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,001 copying molmod/data/test/5ringOH.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,003 copying molmod/data/test/CID_22898828.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,006 copying molmod/data/test/PCGamess_PUNCH -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,037 copying molmod/data/test/SID_31646545.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,039 copying molmod/data/test/SID_31646548.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,042 copying molmod/data/test/SID_40363570.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,044 copying molmod/data/test/SID_40363571.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,047 copying molmod/data/test/SID_41893278.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,049 copying molmod/data/test/SID_41893280.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,051 copying molmod/data/test/SID_54258192.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,053 copying molmod/data/test/SID_55127927.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,056 copying molmod/data/test/SID_55488598.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,058 copying molmod/data/test/SID_56274343.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,061 copying molmod/data/test/TRAJECTORY_H2_CPMD -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,063 copying molmod/data/test/alanine.cube -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,067 copying molmod/data/test/argon.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,069 copying molmod/data/test/bartek.atrj -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,083 copying molmod/data/test/benzene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,086 copying molmod/data/test/butane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,088 copying molmod/data/test/caplayer.cml -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,091 copying molmod/data/test/crystal_api.out -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,109 copying molmod/data/test/cyclopentane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,111 copying molmod/data/test/dinitrogen.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,114 copying molmod/data/test/dlpoly_HISTORY -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,116 copying molmod/data/test/dlpoly_HISTORY_an2 -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,121 copying molmod/data/test/dlpoly_OUTPUT -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,124 copying molmod/data/test/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,126 copying molmod/data/test/ethane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,128 copying molmod/data/test/ethene.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,130 copying molmod/data/test/ethene_ethyl_trans.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,132 copying molmod/data/test/example.sdf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,134 copying molmod/data/test/formol.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,136 copying molmod/data/test/funny.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,138 copying molmod/data/test/h3zrosihohosioh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,141 copying molmod/data/test/il2.pdb -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,156 copying molmod/data/test/lammps_dump.txt -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,159 copying molmod/data/test/lau.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,161 copying molmod/data/test/octane.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,163 copying molmod/data/test/oh3siozroh3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,165 copying molmod/data/test/opt_5ring10T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,167 copying molmod/data/test/opt_5ring12T.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,169 copying molmod/data/test/opt_6_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,172 copying molmod/data/test/opt_6ring.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,174 copying molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,176 copying molmod/data/test/pentapeptide.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,179 copying molmod/data/test/precursor.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,182 copying molmod/data/test/probes.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,184 copying molmod/data/test/tea.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,186 copying molmod/data/test/tetra.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,188 copying molmod/data/test/thf.psf -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,196 copying molmod/data/test/thf.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,200 copying molmod/data/test/thf_64.cell -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,202 copying molmod/data/test/thf_single.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,204 copying molmod/data/test/tpa.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,206 copying molmod/data/test/water.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,208 copying molmod/data/test/water2.gro -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,210 copying molmod/data/test/water_md.inp -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,212 copying molmod/data/test/zr4o8-3.xyz -> build/lib.linux-armv7l-3.9/molmod/data/test 2021-07-12T12:41:31,214 creating build/lib.linux-armv7l-3.9/molmod/examples 2021-07-12T12:41:31,214 creating build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:41:31,215 copying molmod/examples/000_units/a_reaction.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:41:31,218 copying molmod/examples/000_units/b_chbond.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:41:31,220 copying molmod/examples/000_units/c_h2rot.py -> build/lib.linux-armv7l-3.9/molmod/examples/000_units 2021-07-12T12:41:31,222 creating build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:41:31,223 copying molmod/examples/001_molecules/a_convert.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:41:31,226 copying molmod/examples/001_molecules/b_com.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:41:31,228 copying molmod/examples/001_molecules/c_carbon.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:41:31,230 copying molmod/examples/001_molecules/d_size.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:41:31,232 copying molmod/examples/001_molecules/e_shape.py -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:41:31,235 copying molmod/examples/001_molecules/ibuprofen.sdf -> build/lib.linux-armv7l-3.9/molmod/examples/001_molecules 2021-07-12T12:41:31,238 creating build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:41:31,238 copying molmod/examples/002_graphs/a_graphs.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:41:31,241 copying molmod/examples/002_graphs/b_neighbors.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:41:31,243 copying molmod/examples/002_graphs/c_distances.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:41:31,245 copying molmod/examples/002_graphs/caffeine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:41:31,247 copying molmod/examples/002_graphs/d_symmetries.py -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:41:31,250 copying molmod/examples/002_graphs/ethanol.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/002_graphs 2021-07-12T12:41:31,252 creating build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:41:31,253 copying molmod/examples/003_internal_coordinates/a_bond_length.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:41:31,255 copying molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:41:31,257 copying molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:41:31,260 copying molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:41:31,263 copying molmod/examples/003_internal_coordinates/dopamine.fchk -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:41:31,267 copying molmod/examples/003_internal_coordinates/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:41:31,269 copying molmod/examples/003_internal_coordinates/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates 2021-07-12T12:41:31,271 creating build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:41:31,272 copying molmod/examples/004_patterns/a_propane_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:41:31,275 copying molmod/examples/004_patterns/b_dopamine_types.py -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:41:31,278 copying molmod/examples/004_patterns/dopamine.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:41:31,281 copying molmod/examples/004_patterns/mfi_fragment.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:41:31,284 copying molmod/examples/004_patterns/propane.xyz -> build/lib.linux-armv7l-3.9/molmod/examples/004_patterns 2021-07-12T12:41:31,296 running build_ext 2021-07-12T12:41:31,301 cythoning molmod/ext.pyx to molmod/ext.c 2021-07-12T12:41:31,929 /usr/local/lib/python3.9/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-yjoyy1a7/molmod_5aa951f12f354657ac23a06a7f40f150/molmod/ext.pyx 2021-07-12T12:41:31,930 tree = Parsing.p_module(s, pxd, full_module_name) 2021-07-12T12:41:39,233 building 'molmod.ext' extension 2021-07-12T12:41:39,234 creating build/temp.linux-armv7l-3.9 2021-07-12T12:41:39,235 creating build/temp.linux-armv7l-3.9/molmod 2021-07-12T12:41:39,236 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/common.c -o build/temp.linux-armv7l-3.9/molmod/common.o 2021-07-12T12:41:39,486 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ext.c -o build/temp.linux-armv7l-3.9/molmod/ext.o 2021-07-12T12:41:39,888 In file included from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1969, 2021-07-12T12:41:39,888 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2021-07-12T12:41:39,888 from /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/arrayobject.h:4, 2021-07-12T12:41:39,888 from molmod/ext.c:612: 2021-07-12T12:41:39,889 /usr/local/lib/python3.9/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2021-07-12T12:41:39,889 17 | #warning "Using deprecated NumPy API, disable it with " \ 2021-07-12T12:41:39,889 | ^~~~~~~ 2021-07-12T12:41:39,967 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_ff_dm_quad’: 2021-07-12T12:41:39,968 molmod/ext.c:2923:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:39,969 2923 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:41:39,969 | ^~ 2021-07-12T12:41:39,970 molmod/ext.c:2929:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:39,970 2929 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:41:39,970 | ^~ 2021-07-12T12:41:39,971 molmod/ext.c:2963:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:39,972 2963 | __pyx_t_3 = (((__pyx_v_dmk.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:41:39,972 | ^~ 2021-07-12T12:41:39,973 molmod/ext.c:2969:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:39,973 2969 | __pyx_t_3 = (((__pyx_v_dmk.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:41:39,973 | ^~ 2021-07-12T12:41:40,010 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_2ff_dm_reci’: 2021-07-12T12:41:40,011 molmod/ext.c:3679:42: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:40,012 3679 | __pyx_t_1 = (((__pyx_v_radii.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:41:40,012 | ^~ 2021-07-12T12:41:40,014 molmod/ext.c:3711:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:40,014 3711 | __pyx_t_3 = (((__pyx_v_dm0.shape[0]) != __pyx_v_natom) != 0); 2021-07-12T12:41:40,014 | ^~ 2021-07-12T12:41:40,015 molmod/ext.c:3717:40: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:40,016 3717 | __pyx_t_3 = (((__pyx_v_dm0.shape[1]) != __pyx_v_natom) != 0); 2021-07-12T12:41:40,016 | ^~ 2021-07-12T12:41:40,061 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_4ff_bond_quad’: 2021-07-12T12:41:40,063 molmod/ext.c:4583:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:40,063 4583 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T12:41:40,063 | ^~ 2021-07-12T12:41:40,110 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_6ff_bond_hyper’: 2021-07-12T12:41:40,113 molmod/ext.c:5327:44: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:40,113 5327 | __pyx_t_1 = (((__pyx_v_lengths.shape[0]) != __pyx_v_npair) != 0); 2021-07-12T12:41:40,113 | ^~ 2021-07-12T12:41:40,161 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_8graphs_floyd_warshall’: 2021-07-12T12:41:40,164 molmod/ext.c:5858:39: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:40,164 5858 | __pyx_t_1 = (((__pyx_v_dm.shape[1]) != __pyx_v_nvertex) != 0); 2021-07-12T12:41:40,164 | ^~ 2021-07-12T12:41:40,223 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_12similarity_table_labels’: 2021-07-12T12:41:40,226 molmod/ext.c:6700:39: warning: passing argument 2 of ‘similarity_table_labels’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T12:41:40,227 6700 | similarity_table_labels(__pyx_v_n, (&(*((long const *) ( /* dim=0 */ ((char *) (((long const *) __pyx_v_labels.data) + __pyx_t_6)) )))), (&(*__Pyx_BufPtrStrided2d(long *, __pyx_pybuffernd_labels_table.rcbuffer->pybuffer.buf, __pyx_t_8, __pyx_pybuffernd_labels_table.diminfo[0].strides, __pyx_t_9, __pyx_pybuffernd_labels_table.diminfo[1].strides)))); 2021-07-12T12:41:40,227 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:41:40,227 In file included from molmod/ext.c:623: 2021-07-12T12:41:40,227 molmod/similarity.h:30:46: note: expected ‘long int *’ but argument is of type ‘const long int *’ 2021-07-12T12:41:40,227 30 | void similarity_table_labels(size_t n, long *labels, long* labels_table); 2021-07-12T12:41:40,227 | ~~~~~~^~~~~~ 2021-07-12T12:41:40,229 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_14similarity_table_distances’: 2021-07-12T12:41:40,232 molmod/ext.c:6831:52: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:40,232 6831 | __pyx_t_1 = (((__pyx_v_distance_matrix.shape[1]) != __pyx_v_n) != 0); 2021-07-12T12:41:40,232 | ^~ 2021-07-12T12:41:40,247 molmod/ext.c:6929:42: warning: passing argument 2 of ‘similarity_table_distances’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2021-07-12T12:41:40,247 6929 | similarity_table_distances(__pyx_v_n, (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_distance_matrix.data + __pyx_t_7 * __pyx_v_distance_matrix.strides[0]) )) + __pyx_t_8)) )))), (&(*__Pyx_BufPtrStrided1d(double *, __pyx_pybuffernd_distances_table.rcbuffer->pybuffer.buf, __pyx_t_10, __pyx_pybuffernd_distances_table.diminfo[0].strides)))); 2021-07-12T12:41:40,247 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2021-07-12T12:41:40,247 In file included from molmod/ext.c:623: 2021-07-12T12:41:40,247 molmod/similarity.h:31:51: note: expected ‘double *’ but argument is of type ‘const double *’ 2021-07-12T12:41:40,248 31 | void similarity_table_distances(size_t n, double *distance_matrix, double *distances_table); 2021-07-12T12:41:40,248 | ~~~~~~~~^~~~~~~~~~~~~~~ 2021-07-12T12:41:40,254 molmod/ext.c: In function ‘__pyx_pf_6molmod_3ext_16similarity_measure’: 2021-07-12T12:41:40,257 molmod/ext.c:7185:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:40,258 7185 | __pyx_t_1 = (((__pyx_v_distances1.shape[0]) != __pyx_v_n1) != 0); 2021-07-12T12:41:40,258 | ^~ 2021-07-12T12:41:40,262 molmod/ext.c:7249:47: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2021-07-12T12:41:40,262 7249 | __pyx_t_1 = (((__pyx_v_distances2.shape[0]) != __pyx_v_n2) != 0); 2021-07-12T12:41:40,262 | ^~ 2021-07-12T12:41:56,410 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/ff.c -o build/temp.linux-armv7l-3.9/molmod/ff.o 2021-07-12T12:41:56,777 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/graphs.c -o build/temp.linux-armv7l-3.9/molmod/graphs.o 2021-07-12T12:41:56,909 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/molecules.c -o build/temp.linux-armv7l-3.9/molmod/molecules.o 2021-07-12T12:41:57,071 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/similarity.c -o build/temp.linux-armv7l-3.9/molmod/similarity.o 2021-07-12T12:41:57,309 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.9/dist-packages/numpy/core/include -I/usr/include/python3.9 -c molmod/unit_cells.c -o build/temp.linux-armv7l-3.9/molmod/unit_cells.o 2021-07-12T12:41:57,658 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -fwrapv -O2 -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-3.9/molmod/common.o build/temp.linux-armv7l-3.9/molmod/ext.o build/temp.linux-armv7l-3.9/molmod/ff.o build/temp.linux-armv7l-3.9/molmod/graphs.o build/temp.linux-armv7l-3.9/molmod/molecules.o build/temp.linux-armv7l-3.9/molmod/similarity.o build/temp.linux-armv7l-3.9/molmod/unit_cells.o -o build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so 2021-07-12T12:41:57,861 installing to build/bdist.linux-armv7l/wheel 2021-07-12T12:41:57,861 running install 2021-07-12T12:41:57,862 running install_lib 2021-07-12T12:41:57,868 creating build/bdist.linux-armv7l 2021-07-12T12:41:57,868 creating build/bdist.linux-armv7l/wheel 2021-07-12T12:41:57,871 creating build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,872 copying build/lib.linux-armv7l-3.9/molmod/molecules.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,876 copying build/lib.linux-armv7l-3.9/molmod/similarity.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,879 creating build/bdist.linux-armv7l/wheel/molmod/examples 2021-07-12T12:41:57,880 creating build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:41:57,881 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/b_neighbors.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:41:57,884 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/d_symmetries.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:41:57,886 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/a_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:41:57,888 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/ethanol.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:41:57,890 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/c_distances.py -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:41:57,892 copying build/lib.linux-armv7l-3.9/molmod/examples/002_graphs/caffeine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/002_graphs 2021-07-12T12:41:57,895 creating build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:41:57,896 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/a_convert.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:41:57,898 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/ibuprofen.sdf -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:41:57,900 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/c_carbon.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:41:57,902 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/b_com.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:41:57,904 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/d_size.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:41:57,906 copying build/lib.linux-armv7l-3.9/molmod/examples/001_molecules/e_shape.py -> build/bdist.linux-armv7l/wheel/molmod/examples/001_molecules 2021-07-12T12:41:57,909 creating build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:41:57,910 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/a_reaction.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:41:57,912 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/b_chbond.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:41:57,914 copying build/lib.linux-armv7l-3.9/molmod/examples/000_units/c_h2rot.py -> build/bdist.linux-armv7l/wheel/molmod/examples/000_units 2021-07-12T12:41:57,917 creating build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:41:57,917 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:41:57,919 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/dopamine.fchk -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:41:57,923 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/b_bending_angles.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:41:57,925 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/d_dft_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:41:57,928 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/a_bond_length.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:41:57,930 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:41:57,932 copying build/lib.linux-armv7l-3.9/molmod/examples/003_internal_coordinates/c_ff_hessian.py -> build/bdist.linux-armv7l/wheel/molmod/examples/003_internal_coordinates 2021-07-12T12:41:57,935 creating build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:41:57,936 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/b_dopamine_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:41:57,938 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:41:57,940 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/a_propane_types.py -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:41:57,942 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/mfi_fragment.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:41:57,945 copying build/lib.linux-armv7l-3.9/molmod/examples/004_patterns/propane.xyz -> build/bdist.linux-armv7l/wheel/molmod/examples/004_patterns 2021-07-12T12:41:57,946 copying build/lib.linux-armv7l-3.9/molmod/minimizer.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,951 copying build/lib.linux-armv7l-3.9/molmod/vectors.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,953 copying build/lib.linux-armv7l-3.9/molmod/graphs.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,956 copying build/lib.linux-armv7l-3.9/molmod/periodic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,958 copying build/lib.linux-armv7l-3.9/molmod/ext.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,987 copying build/lib.linux-armv7l-3.9/molmod/ext.pyx -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,990 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,992 copying build/lib.linux-armv7l-3.9/molmod/units.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,995 copying build/lib.linux-armv7l-3.9/molmod/zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,997 copying build/lib.linux-armv7l-3.9/molmod/similarity.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:57,999 copying build/lib.linux-armv7l-3.9/molmod/molecules.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,001 copying build/lib.linux-armv7l-3.9/molmod/transformations.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,004 copying build/lib.linux-armv7l-3.9/molmod/toyff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,006 copying build/lib.linux-armv7l-3.9/molmod/__init__.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,008 copying build/lib.linux-armv7l-3.9/molmod/utils.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,011 copying build/lib.linux-armv7l-3.9/molmod/isotopes.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,014 copying build/lib.linux-armv7l-3.9/molmod/quaternions.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,016 copying build/lib.linux-armv7l-3.9/molmod/clusters.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,019 copying build/lib.linux-armv7l-3.9/molmod/binning.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,021 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,023 copying build/lib.linux-armv7l-3.9/molmod/pairff.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,027 copying build/lib.linux-armv7l-3.9/molmod/graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,033 creating build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,034 copying build/lib.linux-armv7l-3.9/molmod/io/cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,036 copying build/lib.linux-armv7l-3.9/molmod/io/number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,039 copying build/lib.linux-armv7l-3.9/molmod/io/cube.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,041 copying build/lib.linux-armv7l-3.9/molmod/io/cml.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,044 copying build/lib.linux-armv7l-3.9/molmod/io/atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,046 copying build/lib.linux-armv7l-3.9/molmod/io/xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,049 copying build/lib.linux-armv7l-3.9/molmod/io/cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,051 copying build/lib.linux-armv7l-3.9/molmod/io/psf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,054 copying build/lib.linux-armv7l-3.9/molmod/io/gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,056 copying build/lib.linux-armv7l-3.9/molmod/io/pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,059 copying build/lib.linux-armv7l-3.9/molmod/io/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,061 copying build/lib.linux-armv7l-3.9/molmod/io/fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,063 copying build/lib.linux-armv7l-3.9/molmod/io/common.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,066 copying build/lib.linux-armv7l-3.9/molmod/io/crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,068 copying build/lib.linux-armv7l-3.9/molmod/io/dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,070 copying build/lib.linux-armv7l-3.9/molmod/io/sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,073 copying build/lib.linux-armv7l-3.9/molmod/io/gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,075 copying build/lib.linux-armv7l-3.9/molmod/io/lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,078 creating build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,079 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gamess.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,081 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cml.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,083 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_psf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,085 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_sdf.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,087 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_gromacs.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,089 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_lammps.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,092 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_pdb.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,094 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_xyz.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,096 copying build/lib.linux-armv7l-3.9/molmod/io/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,098 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_dlpoly.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,100 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_fchk.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,102 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cp2k.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,105 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cpmd.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,107 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_cube.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,110 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_atrj.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,112 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_number_state.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,114 copying build/lib.linux-armv7l-3.9/molmod/io/test/test_crystal.py -> build/bdist.linux-armv7l/wheel/molmod/io/test 2021-07-12T12:41:58,116 copying build/lib.linux-armv7l-3.9/molmod/io/chk.py -> build/bdist.linux-armv7l/wheel/molmod/io 2021-07-12T12:41:58,119 copying build/lib.linux-armv7l-3.9/molmod/common.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,121 copying build/lib.linux-armv7l-3.9/molmod/log.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,124 copying build/lib.linux-armv7l-3.9/molmod/ic.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,127 copying build/lib.linux-armv7l-3.9/molmod/molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,130 copying build/lib.linux-armv7l-3.9/molmod/randomize.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,133 copying build/lib.linux-armv7l-3.9/molmod/graphs.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,136 copying build/lib.linux-armv7l-3.9/molmod/ff.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,137 copying build/lib.linux-armv7l-3.9/molmod/molecules.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,139 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,142 copying build/lib.linux-armv7l-3.9/molmod/ff.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,145 copying build/lib.linux-armv7l-3.9/molmod/similarity.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,147 copying build/lib.linux-armv7l-3.9/molmod/unit_cells.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,149 copying build/lib.linux-armv7l-3.9/molmod/ff.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,151 copying build/lib.linux-armv7l-3.9/molmod/molecules.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,153 copying build/lib.linux-armv7l-3.9/molmod/symmetry.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,155 copying build/lib.linux-armv7l-3.9/molmod/constants.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,158 creating build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:41:58,158 copying build/lib.linux-armv7l-3.9/molmod/data/mass.mas03 -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:41:58,174 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:41:58,176 copying build/lib.linux-armv7l-3.9/molmod/data/periodic.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:41:58,179 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.ods -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:41:58,181 copying build/lib.linux-armv7l-3.9/molmod/data/bonds.csv -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:41:58,183 copying build/lib.linux-armv7l-3.9/molmod/data/toyff_angles.txt -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:41:58,188 creating build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,189 copying build/lib.linux-armv7l-3.9/molmod/data/test/PCGamess_PUNCH -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,216 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,230 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,233 copying build/lib.linux-armv7l-3.9/molmod/data/test/lau.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,236 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,238 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,240 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring10T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,243 copying build/lib.linux-armv7l-3.9/molmod/data/test/tetra.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,245 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363570.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,248 copying build/lib.linux-armv7l-3.9/molmod/data/test/lammps_dump.txt -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,251 copying build/lib.linux-armv7l-3.9/molmod/data/test/tea.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,253 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,255 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893278.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,258 copying build/lib.linux-armv7l-3.9/molmod/data/test/h3zrosihohosioh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,261 copying build/lib.linux-armv7l-3.9/molmod/data/test/dopamine.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,263 copying build/lib.linux-armv7l-3.9/molmod/data/test/water_md.inp -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,266 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_64.cell -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,269 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_6_6ring.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,272 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_OUTPUT -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,276 copying build/lib.linux-armv7l-3.9/molmod/data/test/ethene_ethyl_trans.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,278 copying build/lib.linux-armv7l-3.9/molmod/data/test/pentapeptide.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,281 copying build/lib.linux-armv7l-3.9/molmod/data/test/il2.pdb -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,289 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55488598.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,291 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf_single.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,294 copying build/lib.linux-armv7l-3.9/molmod/data/test/probes.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,297 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_40363571.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,300 copying build/lib.linux-armv7l-3.9/molmod/data/test/water2.gro -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,302 copying build/lib.linux-armv7l-3.9/molmod/data/test/bartek.atrj -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,314 copying build/lib.linux-armv7l-3.9/molmod/data/test/alanine.cube -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,317 copying build/lib.linux-armv7l-3.9/molmod/data/test/octane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,320 copying build/lib.linux-armv7l-3.9/molmod/data/test/example.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,323 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_56274343.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,326 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646548.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,328 copying build/lib.linux-armv7l-3.9/molmod/data/test/oh3siozroh3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,330 copying build/lib.linux-armv7l-3.9/molmod/data/test/crystal_api.out -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,344 copying build/lib.linux-armv7l-3.9/molmod/data/test/dinitrogen.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,347 copying build/lib.linux-armv7l-3.9/molmod/data/test/formol.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,349 copying build/lib.linux-armv7l-3.9/molmod/data/test/tpa.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,351 copying build/lib.linux-armv7l-3.9/molmod/data/test/benzene.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,354 copying build/lib.linux-armv7l-3.9/molmod/data/test/caplayer.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,357 copying build/lib.linux-armv7l-3.9/molmod/data/test/opt_5ring12T.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,360 copying build/lib.linux-armv7l-3.9/molmod/data/test/water.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,363 copying build/lib.linux-armv7l-3.9/molmod/data/test/butane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,365 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,369 copying build/lib.linux-armv7l-3.9/molmod/data/test/precursor.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,372 copying build/lib.linux-armv7l-3.9/molmod/data/test/dlpoly_HISTORY_an2 -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,376 copying build/lib.linux-armv7l-3.9/molmod/data/test/zr4o8-3.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,379 copying build/lib.linux-armv7l-3.9/molmod/data/test/CID_22898828.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,382 copying build/lib.linux-armv7l-3.9/molmod/data/test/cyclopentane.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,385 copying build/lib.linux-armv7l-3.9/molmod/data/test/5ringOH.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,387 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_31646545.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,390 copying build/lib.linux-armv7l-3.9/molmod/data/test/funny.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,392 copying build/lib.linux-armv7l-3.9/molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,395 copying build/lib.linux-armv7l-3.9/molmod/data/test/argon.xyz -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,397 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_54258192.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,400 copying build/lib.linux-armv7l-3.9/molmod/data/test/1LJL_Cys10.cml -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,404 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_55127927.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,407 copying build/lib.linux-armv7l-3.9/molmod/data/test/TRAJECTORY_H2_CPMD -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,410 copying build/lib.linux-armv7l-3.9/molmod/data/test/thf.psf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,419 copying build/lib.linux-armv7l-3.9/molmod/data/test/1TOH.b3lyp.trim.fchk -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,421 copying build/lib.linux-armv7l-3.9/molmod/data/test/SID_41893280.sdf -> build/bdist.linux-armv7l/wheel/molmod/data/test 2021-07-12T12:41:58,424 copying build/lib.linux-armv7l-3.9/molmod/data/nubtab03.asc -> build/bdist.linux-armv7l/wheel/molmod/data 2021-07-12T12:41:58,439 copying build/lib.linux-armv7l-3.9/molmod/graphs.c -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,441 copying build/lib.linux-armv7l-3.9/molmod/bonds.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,444 copying build/lib.linux-armv7l-3.9/molmod/similarity.pxd -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,448 creating build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,449 copying build/lib.linux-armv7l-3.9/molmod/test/test_similarity.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,452 copying build/lib.linux-armv7l-3.9/molmod/test/test_unit_cells.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,455 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecules.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,458 copying build/lib.linux-armv7l-3.9/molmod/test/test_zmatrix.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,461 copying build/lib.linux-armv7l-3.9/molmod/test/test_log.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,463 copying build/lib.linux-armv7l-3.9/molmod/test/__init__.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,466 copying build/lib.linux-armv7l-3.9/molmod/test/test_ic.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,469 copying build/lib.linux-armv7l-3.9/molmod/test/test_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,473 copying build/lib.linux-armv7l-3.9/molmod/test/test_clusters.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,477 copying build/lib.linux-armv7l-3.9/molmod/test/test_utils.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,480 copying build/lib.linux-armv7l-3.9/molmod/test/test_examples.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,483 copying build/lib.linux-armv7l-3.9/molmod/test/test_symmetry.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,485 copying build/lib.linux-armv7l-3.9/molmod/test/test_quaternions.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,488 copying build/lib.linux-armv7l-3.9/molmod/test/test_randomize.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,491 copying build/lib.linux-armv7l-3.9/molmod/test/common.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,493 copying build/lib.linux-armv7l-3.9/molmod/test/test_units.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,496 copying build/lib.linux-armv7l-3.9/molmod/test/test_transformations.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,500 copying build/lib.linux-armv7l-3.9/molmod/test/test_minimizer.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,503 copying build/lib.linux-armv7l-3.9/molmod/test/test_toyff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,506 copying build/lib.linux-armv7l-3.9/molmod/test/test_molecular_graphs.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,509 copying build/lib.linux-armv7l-3.9/molmod/test/test_vectors.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,512 copying build/lib.linux-armv7l-3.9/molmod/test/test_data.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,515 copying build/lib.linux-armv7l-3.9/molmod/test/test_binning.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,518 copying build/lib.linux-armv7l-3.9/molmod/test/test_pairff.py -> build/bdist.linux-armv7l/wheel/molmod/test 2021-07-12T12:41:58,521 copying build/lib.linux-armv7l-3.9/molmod/version.py -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,524 copying build/lib.linux-armv7l-3.9/molmod/common.h -> build/bdist.linux-armv7l/wheel/molmod 2021-07-12T12:41:58,526 running install_egg_info 2021-07-12T12:41:58,536 Copying molmod.egg-info to build/bdist.linux-armv7l/wheel/molmod-1.3.1-py3.9.egg-info 2021-07-12T12:41:58,550 running install_scripts 2021-07-12T12:41:58,600 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2021-07-12T12:41:58,607 creating build/bdist.linux-armv7l/wheel/molmod-1.3.1.dist-info/WHEEL 2021-07-12T12:41:58,610 creating '/tmp/pip-wheel-y7jk9ma4/molmod-1.3.1-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2021-07-12T12:41:58,615 adding 'molmod/__init__.py' 2021-07-12T12:41:58,618 adding 'molmod/binning.py' 2021-07-12T12:41:58,620 adding 'molmod/bonds.py' 2021-07-12T12:41:58,622 adding 'molmod/clusters.py' 2021-07-12T12:41:58,624 adding 'molmod/common.c' 2021-07-12T12:41:58,626 adding 'molmod/common.h' 2021-07-12T12:41:58,628 adding 'molmod/constants.py' 2021-07-12T12:41:58,852 adding 'molmod/ext.cpython-39-arm-linux-gnueabihf.so' 2021-07-12T12:41:58,863 adding 'molmod/ext.pyx' 2021-07-12T12:41:58,865 adding 'molmod/ff.c' 2021-07-12T12:41:58,867 adding 'molmod/ff.h' 2021-07-12T12:41:58,868 adding 'molmod/ff.pxd' 2021-07-12T12:41:58,870 adding 'molmod/graphs.c' 2021-07-12T12:41:58,871 adding 'molmod/graphs.h' 2021-07-12T12:41:58,873 adding 'molmod/graphs.pxd' 2021-07-12T12:41:58,883 adding 'molmod/graphs.py' 2021-07-12T12:41:58,887 adding 'molmod/ic.py' 2021-07-12T12:41:58,889 adding 'molmod/isotopes.py' 2021-07-12T12:41:58,892 adding 'molmod/log.py' 2021-07-12T12:41:58,902 adding 'molmod/minimizer.py' 2021-07-12T12:41:58,906 adding 'molmod/molecular_graphs.py' 2021-07-12T12:41:58,908 adding 'molmod/molecules.c' 2021-07-12T12:41:58,909 adding 'molmod/molecules.h' 2021-07-12T12:41:58,911 adding 'molmod/molecules.pxd' 2021-07-12T12:41:58,913 adding 'molmod/molecules.py' 2021-07-12T12:41:58,916 adding 'molmod/pairff.py' 2021-07-12T12:41:58,918 adding 'molmod/periodic.py' 2021-07-12T12:41:58,920 adding 'molmod/quaternions.py' 2021-07-12T12:41:58,923 adding 'molmod/randomize.py' 2021-07-12T12:41:58,925 adding 'molmod/similarity.c' 2021-07-12T12:41:58,927 adding 'molmod/similarity.h' 2021-07-12T12:41:58,929 adding 'molmod/similarity.pxd' 2021-07-12T12:41:58,931 adding 'molmod/similarity.py' 2021-07-12T12:41:58,933 adding 'molmod/symmetry.py' 2021-07-12T12:41:58,935 adding 'molmod/toyff.py' 2021-07-12T12:41:58,938 adding 'molmod/transformations.py' 2021-07-12T12:41:58,940 adding 'molmod/unit_cells.c' 2021-07-12T12:41:58,942 adding 'molmod/unit_cells.h' 2021-07-12T12:41:58,944 adding 'molmod/unit_cells.pxd' 2021-07-12T12:41:58,947 adding 'molmod/unit_cells.py' 2021-07-12T12:41:58,949 adding 'molmod/units.py' 2021-07-12T12:41:58,952 adding 'molmod/utils.py' 2021-07-12T12:41:58,954 adding 'molmod/vectors.py' 2021-07-12T12:41:58,955 adding 'molmod/version.py' 2021-07-12T12:41:58,958 adding 'molmod/zmatrix.py' 2021-07-12T12:41:58,960 adding 'molmod/data/bonds.csv' 2021-07-12T12:41:58,964 adding 'molmod/data/bonds.ods' 2021-07-12T12:41:59,050 adding 'molmod/data/mass.mas03' 2021-07-12T12:41:59,135 adding 'molmod/data/nubtab03.asc' 2021-07-12T12:41:59,141 adding 'molmod/data/periodic.csv' 2021-07-12T12:41:59,145 adding 'molmod/data/periodic.ods' 2021-07-12T12:41:59,160 adding 'molmod/data/toyff_angles.txt' 2021-07-12T12:41:59,168 adding 'molmod/data/test/1LJL_Cys10.cml' 2021-07-12T12:41:59,301 adding 'molmod/data/test/1TOH.b3lyp.fchk' 2021-07-12T12:41:59,307 adding 'molmod/data/test/1TOH.b3lyp.trim.fchk' 2021-07-12T12:41:59,309 adding 'molmod/data/test/5ringOH.xyz' 2021-07-12T12:41:59,310 adding 'molmod/data/test/CID_22898828.sdf' 2021-07-12T12:41:59,555 adding 'molmod/data/test/PCGamess_PUNCH' 2021-07-12T12:41:59,565 adding 'molmod/data/test/SID_31646545.sdf' 2021-07-12T12:41:59,567 adding 'molmod/data/test/SID_31646548.sdf' 2021-07-12T12:41:59,569 adding 'molmod/data/test/SID_40363570.sdf' 2021-07-12T12:41:59,571 adding 'molmod/data/test/SID_40363571.sdf' 2021-07-12T12:41:59,572 adding 'molmod/data/test/SID_41893278.sdf' 2021-07-12T12:41:59,574 adding 'molmod/data/test/SID_41893280.sdf' 2021-07-12T12:41:59,576 adding 'molmod/data/test/SID_54258192.sdf' 2021-07-12T12:41:59,577 adding 'molmod/data/test/SID_55127927.sdf' 2021-07-12T12:41:59,579 adding 'molmod/data/test/SID_55488598.sdf' 2021-07-12T12:41:59,581 adding 'molmod/data/test/SID_56274343.sdf' 2021-07-12T12:41:59,582 adding 'molmod/data/test/TRAJECTORY_H2_CPMD' 2021-07-12T12:41:59,586 adding 'molmod/data/test/alanine.cube' 2021-07-12T12:41:59,588 adding 'molmod/data/test/argon.xyz' 2021-07-12T12:41:59,665 adding 'molmod/data/test/bartek.atrj' 2021-07-12T12:41:59,670 adding 'molmod/data/test/benzene.xyz' 2021-07-12T12:41:59,671 adding 'molmod/data/test/butane.xyz' 2021-07-12T12:41:59,673 adding 'molmod/data/test/caplayer.cml' 2021-07-12T12:41:59,741 adding 'molmod/data/test/crystal_api.out' 2021-07-12T12:41:59,746 adding 'molmod/data/test/cyclopentane.xyz' 2021-07-12T12:41:59,748 adding 'molmod/data/test/dinitrogen.xyz' 2021-07-12T12:41:59,749 adding 'molmod/data/test/dlpoly_HISTORY' 2021-07-12T12:41:59,751 adding 'molmod/data/test/dlpoly_HISTORY_an2' 2021-07-12T12:41:59,756 adding 'molmod/data/test/dlpoly_OUTPUT' 2021-07-12T12:41:59,758 adding 'molmod/data/test/dopamine.xyz' 2021-07-12T12:41:59,759 adding 'molmod/data/test/ethane.xyz' 2021-07-12T12:41:59,761 adding 'molmod/data/test/ethene.xyz' 2021-07-12T12:41:59,763 adding 'molmod/data/test/ethene_ethyl_trans.xyz' 2021-07-12T12:41:59,764 adding 'molmod/data/test/example.sdf' 2021-07-12T12:41:59,766 adding 'molmod/data/test/formol.xyz' 2021-07-12T12:41:59,768 adding 'molmod/data/test/funny.xyz' 2021-07-12T12:41:59,769 adding 'molmod/data/test/h3zrosihohosioh3.xyz' 2021-07-12T12:41:59,799 adding 'molmod/data/test/il2.pdb' 2021-07-12T12:41:59,804 adding 'molmod/data/test/lammps_dump.txt' 2021-07-12T12:41:59,806 adding 'molmod/data/test/lau.xyz' 2021-07-12T12:41:59,808 adding 'molmod/data/test/octane.xyz' 2021-07-12T12:41:59,809 adding 'molmod/data/test/oh3siozroh3.xyz' 2021-07-12T12:41:59,811 adding 'molmod/data/test/opt_5ring10T.xyz' 2021-07-12T12:41:59,813 adding 'molmod/data/test/opt_5ring12T.xyz' 2021-07-12T12:41:59,815 adding 'molmod/data/test/opt_6_6ring.xyz' 2021-07-12T12:41:59,817 adding 'molmod/data/test/opt_6ring.xyz' 2021-07-12T12:41:59,818 adding 'molmod/data/test/osih2osihosih2osih2ozrh2oh.xyz' 2021-07-12T12:41:59,821 adding 'molmod/data/test/pentapeptide.psf' 2021-07-12T12:41:59,823 adding 'molmod/data/test/precursor.xyz' 2021-07-12T12:41:59,825 adding 'molmod/data/test/probes.xyz' 2021-07-12T12:41:59,826 adding 'molmod/data/test/tea.xyz' 2021-07-12T12:41:59,828 adding 'molmod/data/test/tetra.xyz' 2021-07-12T12:41:59,850 adding 'molmod/data/test/thf.psf' 2021-07-12T12:41:59,858 adding 'molmod/data/test/thf.xyz' 2021-07-12T12:41:59,860 adding 'molmod/data/test/thf_64.cell' 2021-07-12T12:41:59,862 adding 'molmod/data/test/thf_single.xyz' 2021-07-12T12:41:59,863 adding 'molmod/data/test/tpa.xyz' 2021-07-12T12:41:59,865 adding 'molmod/data/test/water.xyz' 2021-07-12T12:41:59,866 adding 'molmod/data/test/water2.gro' 2021-07-12T12:41:59,868 adding 'molmod/data/test/water_md.inp' 2021-07-12T12:41:59,870 adding 'molmod/data/test/zr4o8-3.xyz' 2021-07-12T12:41:59,873 adding 'molmod/examples/000_units/a_reaction.py' 2021-07-12T12:41:59,874 adding 'molmod/examples/000_units/b_chbond.py' 2021-07-12T12:41:59,875 adding 'molmod/examples/000_units/c_h2rot.py' 2021-07-12T12:41:59,878 adding 'molmod/examples/001_molecules/a_convert.py' 2021-07-12T12:41:59,880 adding 'molmod/examples/001_molecules/b_com.py' 2021-07-12T12:41:59,881 adding 'molmod/examples/001_molecules/c_carbon.py' 2021-07-12T12:41:59,883 adding 'molmod/examples/001_molecules/d_size.py' 2021-07-12T12:41:59,885 adding 'molmod/examples/001_molecules/e_shape.py' 2021-07-12T12:41:59,888 adding 'molmod/examples/001_molecules/ibuprofen.sdf' 2021-07-12T12:41:59,890 adding 'molmod/examples/002_graphs/a_graphs.py' 2021-07-12T12:41:59,892 adding 'molmod/examples/002_graphs/b_neighbors.py' 2021-07-12T12:41:59,894 adding 'molmod/examples/002_graphs/c_distances.py' 2021-07-12T12:41:59,895 adding 'molmod/examples/002_graphs/caffeine.xyz' 2021-07-12T12:41:59,897 adding 'molmod/examples/002_graphs/d_symmetries.py' 2021-07-12T12:41:59,899 adding 'molmod/examples/002_graphs/ethanol.xyz' 2021-07-12T12:41:59,901 adding 'molmod/examples/003_internal_coordinates/a_bond_length.py' 2021-07-12T12:41:59,903 adding 'molmod/examples/003_internal_coordinates/b_bending_angles.py' 2021-07-12T12:41:59,905 adding 'molmod/examples/003_internal_coordinates/c_ff_hessian.py' 2021-07-12T12:41:59,908 adding 'molmod/examples/003_internal_coordinates/d_dft_hessian.py' 2021-07-12T12:41:59,919 adding 'molmod/examples/003_internal_coordinates/dopamine.fchk' 2021-07-12T12:41:59,921 adding 'molmod/examples/003_internal_coordinates/dopamine.xyz' 2021-07-12T12:41:59,922 adding 'molmod/examples/003_internal_coordinates/propane.xyz' 2021-07-12T12:41:59,925 adding 'molmod/examples/004_patterns/a_propane_types.py' 2021-07-12T12:41:59,926 adding 'molmod/examples/004_patterns/b_dopamine_types.py' 2021-07-12T12:41:59,928 adding 'molmod/examples/004_patterns/dopamine.xyz' 2021-07-12T12:41:59,930 adding 'molmod/examples/004_patterns/mfi_fragment.xyz' 2021-07-12T12:41:59,931 adding 'molmod/examples/004_patterns/propane.xyz' 2021-07-12T12:41:59,934 adding 'molmod/io/__init__.py' 2021-07-12T12:41:59,936 adding 'molmod/io/atrj.py' 2021-07-12T12:41:59,938 adding 'molmod/io/chk.py' 2021-07-12T12:41:59,940 adding 'molmod/io/cml.py' 2021-07-12T12:41:59,942 adding 'molmod/io/common.py' 2021-07-12T12:41:59,945 adding 'molmod/io/cp2k.py' 2021-07-12T12:41:59,947 adding 'molmod/io/cpmd.py' 2021-07-12T12:41:59,949 adding 'molmod/io/crystal.py' 2021-07-12T12:41:59,952 adding 'molmod/io/cube.py' 2021-07-12T12:41:59,954 adding 'molmod/io/dlpoly.py' 2021-07-12T12:41:59,957 adding 'molmod/io/fchk.py' 2021-07-12T12:41:59,959 adding 'molmod/io/gamess.py' 2021-07-12T12:41:59,961 adding 'molmod/io/gromacs.py' 2021-07-12T12:41:59,963 adding 'molmod/io/lammps.py' 2021-07-12T12:41:59,965 adding 'molmod/io/number_state.py' 2021-07-12T12:41:59,968 adding 'molmod/io/pdb.py' 2021-07-12T12:41:59,970 adding 'molmod/io/psf.py' 2021-07-12T12:41:59,972 adding 'molmod/io/sdf.py' 2021-07-12T12:41:59,974 adding 'molmod/io/xyz.py' 2021-07-12T12:41:59,977 adding 'molmod/io/test/__init__.py' 2021-07-12T12:41:59,979 adding 'molmod/io/test/test_atrj.py' 2021-07-12T12:41:59,980 adding 'molmod/io/test/test_cml.py' 2021-07-12T12:41:59,982 adding 'molmod/io/test/test_cp2k.py' 2021-07-12T12:41:59,984 adding 'molmod/io/test/test_cpmd.py' 2021-07-12T12:41:59,985 adding 'molmod/io/test/test_crystal.py' 2021-07-12T12:41:59,987 adding 'molmod/io/test/test_cube.py' 2021-07-12T12:41:59,989 adding 'molmod/io/test/test_dlpoly.py' 2021-07-12T12:41:59,991 adding 'molmod/io/test/test_fchk.py' 2021-07-12T12:41:59,992 adding 'molmod/io/test/test_gamess.py' 2021-07-12T12:41:59,994 adding 'molmod/io/test/test_gromacs.py' 2021-07-12T12:41:59,996 adding 'molmod/io/test/test_lammps.py' 2021-07-12T12:41:59,998 adding 'molmod/io/test/test_number_state.py' 2021-07-12T12:41:59,999 adding 'molmod/io/test/test_pdb.py' 2021-07-12T12:42:00,001 adding 'molmod/io/test/test_psf.py' 2021-07-12T12:42:00,003 adding 'molmod/io/test/test_sdf.py' 2021-07-12T12:42:00,005 adding 'molmod/io/test/test_xyz.py' 2021-07-12T12:42:00,007 adding 'molmod/test/__init__.py' 2021-07-12T12:42:00,009 adding 'molmod/test/common.py' 2021-07-12T12:42:00,011 adding 'molmod/test/test_binning.py' 2021-07-12T12:42:00,013 adding 'molmod/test/test_clusters.py' 2021-07-12T12:42:00,015 adding 'molmod/test/test_data.py' 2021-07-12T12:42:00,017 adding 'molmod/test/test_examples.py' 2021-07-12T12:42:00,020 adding 'molmod/test/test_graphs.py' 2021-07-12T12:42:00,022 adding 'molmod/test/test_ic.py' 2021-07-12T12:42:00,024 adding 'molmod/test/test_log.py' 2021-07-12T12:42:00,026 adding 'molmod/test/test_minimizer.py' 2021-07-12T12:42:00,030 adding 'molmod/test/test_molecular_graphs.py' 2021-07-12T12:42:00,032 adding 'molmod/test/test_molecules.py' 2021-07-12T12:42:00,034 adding 'molmod/test/test_pairff.py' 2021-07-12T12:42:00,036 adding 'molmod/test/test_quaternions.py' 2021-07-12T12:42:00,038 adding 'molmod/test/test_randomize.py' 2021-07-12T12:42:00,040 adding 'molmod/test/test_similarity.py' 2021-07-12T12:42:00,042 adding 'molmod/test/test_symmetry.py' 2021-07-12T12:42:00,044 adding 'molmod/test/test_toyff.py' 2021-07-12T12:42:00,046 adding 'molmod/test/test_transformations.py' 2021-07-12T12:42:00,049 adding 'molmod/test/test_unit_cells.py' 2021-07-12T12:42:00,051 adding 'molmod/test/test_units.py' 2021-07-12T12:42:00,053 adding 'molmod/test/test_utils.py' 2021-07-12T12:42:00,055 adding 'molmod/test/test_vectors.py' 2021-07-12T12:42:00,057 adding 'molmod/test/test_zmatrix.py' 2021-07-12T12:42:00,065 adding 'molmod-1.3.1.dist-info/LICENSE.txt' 2021-07-12T12:42:00,066 adding 'molmod-1.3.1.dist-info/METADATA' 2021-07-12T12:42:00,067 adding 'molmod-1.3.1.dist-info/WHEEL' 2021-07-12T12:42:00,068 adding 'molmod-1.3.1.dist-info/top_level.txt' 2021-07-12T12:42:00,071 adding 'molmod-1.3.1.dist-info/RECORD' 2021-07-12T12:42:00,101 removing build/bdist.linux-armv7l/wheel 2021-07-12T12:42:00,569 Building wheel for molmod (setup.py): finished with status 'done' 2021-07-12T12:42:00,596 Created wheel for molmod: filename=molmod-1.3.1-cp39-cp39-linux_armv7l.whl size=1953921 sha256=babaff03785142a5537ba54c3eaf8ed85f176f9b3fa8d91003fc4020eb8dd525 2021-07-12T12:42:00,596 Stored in directory: /tmp/pip-ephem-wheel-cache-a4_90pa0/wheels/22/a8/9c/45f572d62917cc9f042bdfb42cd0cecc8cc386407e5e21e488 2021-07-12T12:42:00,613 Successfully built molmod 2021-07-12T12:42:00,690 Removed build tracker: '/tmp/pip-req-tracker-4_3tf5_g'